Lotus
BLAST2 result
BLASTP 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= TM0302a.1
         (299 letters)

Database: nr 
           2,540,612 sequences; 863,360,394 total letters

Searching..................................................done


                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

emb|CAA73798.1| reverse transcriptase [Beta vulgaris subsp. vulg...   171  3e-41
gb|AAC28221.1| similar to reverse transcriptases (PFam: rvt.hmm,...   110  6e-23
dbj|BAB01845.1| non-LTR retroelement reverse transcriptase-like ...   109  1e-22
emb|CAA66812.1| non-ltr retrotransposon reverse transcriptase-li...   109  1e-22
gb|AAX92720.1| retrotransposon protein, putative, unclassified [...   106  9e-22
gb|AAP44582.1| putative reverse transcriptase [Oryza sativa (jap...   104  3e-21
gb|AAC67331.1| putative non-LTR retroelement reverse transcripta...   103  5e-21
gb|AAV44086.1| hypothetical protein [Oryza sativa (japonica cult...   103  6e-21
gb|AAC13599.1| similar to reverse transcriptase (Pfam: transcrip...   103  8e-21
gb|AAV32224.1| hypothetical protein [Oryza sativa (japonica cult...   101  2e-20
emb|CAB78008.1| putative protein [Arabidopsis thaliana] gi|73210...   101  3e-20
gb|AAK71569.2| putative reverse transcriptase [Oryza sativa (jap...   101  3e-20
gb|AAD21699.1| Contains reverse transcriptase domain (rvt) PF|00...   101  3e-20
emb|CAE02147.1| OSJNBa0081G05.2 [Oryza sativa (japonica cultivar...   100  4e-20
emb|CAE04660.2| OSJNBa0061G20.16 [Oryza sativa (japonica cultiva...   100  4e-20
dbj|BAB09379.1| non-LTR retroelement reverse transcriptase-like ...   100  5e-20
gb|AAG51783.1| reverse transcriptase, putative; 16838-20266 [Ara...    99  1e-19
gb|AAC63844.1| putative non-LTR retroelement reverse transcripta...    98  3e-19
gb|AAP54692.1| putative reverse transcriptase [Oryza sativa (jap...    98  3e-19
dbj|BAA97290.1| non-LTR retroelement reverse transcriptase-like ...    97  4e-19

>emb|CAA73798.1| reverse transcriptase [Beta vulgaris subsp. vulgaris]
           gi|7484649|pir||T14619 reverse transcriptase - beet
           retrotransposon (fragment)
          Length = 507

 Score =  171 bits (432), Expect = 3e-41
 Identities = 97/300 (32%), Positives = 155/300 (51%), Gaps = 16/300 (5%)

Query: 12  KPFRNRNCWLQNHAFGECVSTWSSFDIQGWGAYTFKEKLKRLKLKLNQWEKENVGDLDKI 71
           KPFR  NCWL +    +C+   S    +   + +  +KL+ LK  L QW ++  G +D  
Sbjct: 107 KPFRFLNCWLTHP---QCMKIISEIWTKNHNS-SVPDKLRTLKEALKQWNQKEFGIIDDN 162

Query: 72  CKDPVTRINALDIKEGDGNLSSQEQKQRDDFLVEYWKVAKFNDSLLFQKSRDRWVKDGDS 131
            K    +I+ LD       L + E ++RDD  +  W   K ++S     SR RW+K+GDS
Sbjct: 163 IKHCEEKIHFLDNIANSRLLCTNELQERDDAQLNLWTWLKRSESYWALNSRARWIKEGDS 222

Query: 132 NTKYFHNSVNWRRRTNAIRGLAVDGEWVEDPKVVKSKMIEFFEAQFTSNPEVGVFLEGTP 191
           NT+YFH     RR  N ++ +  +G+ +  P  +K + + +F+  F           G  
Sbjct: 223 NTRYFHTLATIRRHKNHLQYIKTEGKNISKPGEIKEEAVAYFQHIFAEEFSTRPVFNGLN 282

Query: 192 FRSISDEDNLALTQTFNLEEIRTAVWECEGDRSLGPD------------VLKVDILRVLK 239
           F  +S+ +  +L   F  EEI  AV  C+  ++ GPD            V+K DI ++++
Sbjct: 283 FNKLSESECSSLIAPFTHEEIDEAVDSCDAQKAPGPDGFNFKFIKSSWEVIKKDIYKIVE 342

Query: 240 DFHRNGVWPKGGNSSFITLIPNISNLMSLNDYISISVIGCMYKIVSKVLTTRLSKVMGHI 299
           DF  +G  P G NS+FI LIP   +    N++  IS++GC+YKI++K+L  RL +VM H+
Sbjct: 343 DFWASGSLPHGCNSAFIALIPKTQHPRGFNEFRPISMVGCLYKIIAKILARRLQRVMDHL 402


>gb|AAC28221.1| similar to reverse transcriptases (PFam: rvt.hmm, score: 60.13)
           [Arabidopsis thaliana] gi|7488321|pir||T01871
           RNA-directed DNA polymerase homolog T24M8.8 -
           Arabidopsis thaliana
          Length = 1164

 Score =  110 bits (274), Expect = 6e-23
 Identities = 77/304 (25%), Positives = 147/304 (48%), Gaps = 29/304 (9%)

Query: 12  KPFRNRNCWLQNHAFGECVST-WSSFDIQGWGAYTFKEKLKRLKLKLNQWEKENVGDLDK 70
           KPFR  N  L++  F   +   W S  + G   Y    KLK LK  +  + ++N  D++K
Sbjct: 144 KPFRFNNFLLKDENFLSLICLKWFSTSVTGSAMYRVSVKLKALKKVIRDFSRDNYSDIEK 203

Query: 71  ICKDPVTRI----NALDIKEGDGNLSSQEQKQRDDFLVEYWKV-AKFNDSLLFQKSRDRW 125
             K+    +    + L       N + + + QR       W++ A+   S  +Q+SR  W
Sbjct: 204 RTKEAHDALLLAQSVLLASPCPSNAAIEAETQRK------WRILAEAEASFFYQRSRVNW 257

Query: 126 VKDGDSNTKYFHNSVNWRRRTNAIRGLAVD-GEWVEDPKVVKSKMIEFFEAQFTSNPEVG 184
           +++GD N+ YFH   + R+  N I  L+   G+ +E  + +++  +E+F++   S   + 
Sbjct: 258 LREGDMNSSYFHKMASARQSLNHIHFLSDPVGDRIEGQQNLENHCVEYFQSNLGSEQGLP 317

Query: 185 VFLEGTPFRSIS----DEDNLALTQTFNLEEIRTAVWECEGDRSLGPD------------ 228
           +F +      +S        ++L   F+ E+I+ A +    +++ GPD            
Sbjct: 318 LFEQADISNLLSYRCSPAQQVSLDTPFSSEQIKNAFFSLPRNKASGPDGFSPEFFCACWP 377

Query: 229 VLKVDILRVLKDFHRNGVWPKGGNSSFITLIPNISNLMSLNDYISISVIGCMYKIVSKVL 288
           ++  ++   + +F  +G   K  N++ + LIP I+N  S++D+  IS +  +YK++SK+L
Sbjct: 378 IIGGEVTEAIHEFFTSGKLLKQWNATNLVLIPKITNASSMSDFRPISCLNTVYKVISKLL 437

Query: 289 TTRL 292
           T RL
Sbjct: 438 TDRL 441


>dbj|BAB01845.1| non-LTR retroelement reverse transcriptase-like protein
           [Arabidopsis thaliana]
          Length = 893

 Score =  109 bits (272), Expect = 1e-22
 Identities = 87/317 (27%), Positives = 155/317 (48%), Gaps = 37/317 (11%)

Query: 12  KPFRNRNCWLQNHAFGECV-STWSSFDIQGWGAYTFKEKLKRLKLKLNQWEKENVGDLDK 70
           +PFR  N +L N  F + +   W S ++ G   Y   +KLK LKL +  + +EN  D++K
Sbjct: 244 RPFRFFNYFLHNPDFLQLIRENWYSCNVSGSAMYRVSKKLKHLKLPICCFSRENYSDIEK 303

Query: 71  ICKDPVTRINALDIKEGDGNLSSQEQKQRDDFL--VEYWKV-AKFNDSLLFQKSRDRWVK 127
                V+  +A+ +      L++         L     W++ AK  +S   QKS   W+ 
Sbjct: 304 ----RVSEAHAIVLHRQRITLTNPSVVHATLELEATRKWQILAKAEESFFCQKSSISWLY 359

Query: 128 DGDSNTKYFHNSVNWRRRTNAIRGLAVD-GEWVEDPKVVKSKMIE----FFEAQFT---- 178
           +GD+NT YFH   + R+  N I  L  D GE +E  + +K  + E    FFE+       
Sbjct: 360 EGDNNTAYFHKMADMRKSINTINFLIDDFGERIETQQGIKEGIKEHSCNFFESLLCGVEG 419

Query: 179 ----SNPEVGVFLEGTPFRSISDEDNLALTQTFNLEEIRTAVWECEGDRSLGPD------ 228
               +  ++ + L    FR   D+ N  L ++F+  +I+ A +    +++ GPD      
Sbjct: 420 ENSLAQSDMNLLLS---FRCSVDQIN-DLERSFSDLDIQEAFFSLPRNKASGPDGYSSEF 475

Query: 229 ------VLKVDILRVLKDFHRNGVWPKGGNSSFITLIPNISNLMSLNDYISISVIGCMYK 282
                 V+  ++   +++F R+G   K  N++ + LIP I+N   + D+  IS +  +YK
Sbjct: 476 FKGVWFVVGPEVTEAVQEFFRSGQLLKQWNATTLVLIPKITNSSKMTDFRPISCLNTLYK 535

Query: 283 IVSKVLTTRLSKVMGHI 299
           +++K+LT+RL K++  +
Sbjct: 536 VIAKLLTSRLKKLLNEV 552


>emb|CAA66812.1| non-ltr retrotransposon reverse transcriptase-like protein
           [Arabidopsis thaliana]
          Length = 893

 Score =  109 bits (272), Expect = 1e-22
 Identities = 87/317 (27%), Positives = 155/317 (48%), Gaps = 37/317 (11%)

Query: 12  KPFRNRNCWLQNHAFGECV-STWSSFDIQGWGAYTFKEKLKRLKLKLNQWEKENVGDLDK 70
           +PFR  N +L N  F + +   W S ++ G   Y   +KLK LKL +  + +EN  D++K
Sbjct: 244 RPFRFFNYFLHNPDFLQLIRENWYSCNVSGSAMYRVSKKLKHLKLPICCFSRENYSDIEK 303

Query: 71  ICKDPVTRINALDIKEGDGNLSSQEQKQRDDFL--VEYWKV-AKFNDSLLFQKSRDRWVK 127
                V+  +A+ +      L++         L     W++ AK  +S   QKS   W+ 
Sbjct: 304 ----RVSEAHAIVLHRQRITLTNPSVVHATLELEATRKWQILAKAEESFFCQKSSISWLY 359

Query: 128 DGDSNTKYFHNSVNWRRRTNAIRGLAVD-GEWVEDPKVVKSKMIE----FFEAQFT---- 178
           +GD+NT YFH   + R+  N I  L  D GE +E  + +K  + E    FFE+       
Sbjct: 360 EGDNNTAYFHKMADMRKSINTINFLIDDFGERIETQQGIKEGIKEHSCNFFESLLCGVEG 419

Query: 179 ----SNPEVGVFLEGTPFRSISDEDNLALTQTFNLEEIRTAVWECEGDRSLGPD------ 228
               +  ++ + L    FR   D+ N  L ++F+  +I+ A +    +++ GPD      
Sbjct: 420 ENSLAQSDMNLLLS---FRCSVDQIN-DLERSFSDLDIQEAFFSLPRNKASGPDGYSSEF 475

Query: 229 ------VLKVDILRVLKDFHRNGVWPKGGNSSFITLIPNISNLMSLNDYISISVIGCMYK 282
                 V+  ++   +++F R+G   K  N++ + LIP I+N   + D+  IS +  +YK
Sbjct: 476 FKGVWFVVGPEVTEAVQEFFRSGQLLKQWNATTLVLIPKITNSSKMTDFRPISCLNTLYK 535

Query: 283 IVSKVLTTRLSKVMGHI 299
           +++K+LT+RL K++  +
Sbjct: 536 VIAKLLTSRLKKLLNEV 552


>gb|AAX92720.1| retrotransposon protein, putative, unclassified [Oryza sativa
           (japonica cultivar-group)] gi|62701880|gb|AAX92953.1|
           retrotransposon protein, putative, unclassified [Oryza
           sativa (japonica cultivar-group)]
          Length = 838

 Score =  106 bits (264), Expect = 9e-22
 Identities = 73/290 (25%), Positives = 140/290 (48%), Gaps = 16/290 (5%)

Query: 12  KPFRNRNCWLQNHAFGECVSTWSSFDIQGWGAYTFKEKLKRLKLKLNQWEKENVGDLDKI 71
           K F+    W       E V +    +  G     ++++ + L+ KLN W K   G   + 
Sbjct: 230 KSFKFELSWFLREDLKEIVESVWKINYYGSSIERWQKRFRALRKKLNGWNKNWEGRYRRE 289

Query: 72  CKDPVTRINALDIKEGDGNLSSQEQKQRDDFLVEYWKVAKFNDSLLFQKSRDRWVKDGDS 131
            +  + +I  LD K     +S +++++R +   +   V +      FQ+S+++ + +GD 
Sbjct: 290 KESILEKIENLDAKVERCGMSREDREERKELEDKLNFVIREEKIKWFQRSKEKELLEGDC 349

Query: 132 NTKYFHNSVNWRRRTNAIRGLAVDGEWVEDPKVVKSKMIEFFEAQFTSNPEVGVFLEGTP 191
           NTKY+H   N R+R + I  L  +   +E  + + + +  F++  F    +  +FL+   
Sbjct: 350 NTKYYHAKANGRKRKSYIHSLTQEEGEIEGQEKLLTYITSFYKDLFGHPKQNTLFLDMRG 409

Query: 192 FRSISDEDNLALTQTFNLEEIRTAVWECEGDRSLGPD--VLKVDILRVLKDFHRNGVWPK 249
             +I +E  + LT+ F+ EE+R  V+E + +++ GPD  +  VDI R+            
Sbjct: 410 VTTIMEEHKVMLTKPFSEEEVRIVVFELKKNKAPGPDGFIGLVDIDRL------------ 457

Query: 250 GGNSSFITLIPNISNLMSLNDYISISVIGCMYKIVSKVLTTRLSKVMGHI 299
             N   I LIP I +   +  Y  I ++   +KI++KVL  R++++M +I
Sbjct: 458 --NFGVINLIPKIKDAAQIQKYRPICLLNVSFKIITKVLMNRITEIMTYI 505


>gb|AAP44582.1| putative reverse transcriptase [Oryza sativa (japonica
            cultivar-group)] gi|34896522|ref|NP_909605.1| putative
            reverse transcriptase [Oryza sativa (japonica
            cultivar-group)]
          Length = 1556

 Score =  104 bits (260), Expect = 3e-21
 Identities = 72/292 (24%), Positives = 136/292 (45%), Gaps = 16/292 (5%)

Query: 20   WLQNHAFGECVS-TWSSFDIQGWGAYTFKEKLKRLKLKLNQWEKENVGDLDKICKDPVTR 78
            WL+   F + V   W    I+G     ++ K++RL+  L  W K   G   K  K+ + +
Sbjct: 1029 WLRRDGFSDIVKEVWQGVSIEGTPLERWQRKIRRLRQFLRGWAKNITGAYKKEKKELLDK 1088

Query: 79   INALDIKEGDGNLSSQEQKQRDDFLVEYWKVAKFNDSLLFQKSRDRWVKDGDSNTKYFHN 138
            ++ L  K     L+  E   +        ++ +  +   +Q+++ + + +GD+NTKY+H 
Sbjct: 1089 LDTLVKKAEHTILNEFELNVKHVLNDRLAELLREEEIKWYQRAKVKHLLEGDANTKYYHL 1148

Query: 139  SVNWRRRTNAIRGLAVDGEWVEDPKVVKSKMIEFFEAQFTSNPEVGVFLEGT---PFRSI 195
              N R R   I  L    E +     +K  + ++F+  F  +    +FL+ +     R +
Sbjct: 1149 LANGRHRKTRIFQLQDGNEVITGDAQLKEHITKYFKTLFGPSQTSSIFLDESQVDDIRQV 1208

Query: 196  SDEDNLALTQTFNLEEIRTAVWECEGDRSLGPD------------VLKVDILRVLKDFHR 243
            S E+N +LT  F  EEI+ A+++ + + + GPD            ++K D+L +  DF +
Sbjct: 1209 SAEENESLTADFTEEEIKCAIFQMKHNTAPGPDGFPPEFYQAFWTIIKDDLLALFSDFQQ 1268

Query: 244  NGVWPKGGNSSFITLIPNISNLMSLNDYISISVIGCMYKIVSKVLTTRLSKV 295
              +     N   I L+P   ++ ++  Y  I ++   +KI +KV T RL+ V
Sbjct: 1269 GSLPLNSLNFGTIILLPKQKDVRTIQQYRPICLLNVSFKIFTKVATNRLTSV 1320


>gb|AAC67331.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
           thaliana] gi|25410913|pir||B84426 hypothetical protein
           At2g01550 [imported] - Arabidopsis thaliana
          Length = 1449

 Score =  103 bits (258), Expect = 5e-21
 Identities = 75/272 (27%), Positives = 125/272 (45%), Gaps = 21/272 (7%)

Query: 44  YTFKEKLKRLKLKLNQWEKENVGDLDKICKDPVTRINALDIKEGDGNLSSQEQKQRDDFL 103
           + F +KLK LK KL    KE +G+L K  ++    +     +    N S +  +   +  
Sbjct: 700 FRFTKKLKALKPKLRGLAKEKMGNLVKRTREAYLSLCQAQ-QSNSQNPSQRAMEIESEAY 758

Query: 104 VEYWKVAKFNDSLLFQKSRDRWVKDGDSNTKYFHNSVNWRRRTNAIRGLAV-DGEWVEDP 162
           V + ++A   +  L Q S+  W+K GD N K FH +   R   N+IR +   DG      
Sbjct: 759 VRWDRIASIEEKYLKQVSKLHWLKVGDKNNKTFHRAATARAAQNSIREIQKEDGSTATTK 818

Query: 163 KVVKSKMIEFFEA--QFTSNPEVGVFLEGT----PFRSISDEDNLALTQTFNLEEIRTAV 216
             +K++   FF+   Q   N   G+ +E      P+     E ++ LT + + +EIR A+
Sbjct: 819 DDIKNETERFFQEFLQLIPNDYEGITVEKLTSLLPYHCSPAEKDM-LTASVSAKEIRGAL 877

Query: 217 WECEGDRSLGPD------------VLKVDILRVLKDFHRNGVWPKGGNSSFITLIPNISN 264
           +    D+S GPD            ++  + +  +K F   G  PKG N++ + LIP    
Sbjct: 878 FSMPNDKSPGPDGYTSEFYKRAWDIIGAEFVLAVKSFFEKGFLPKGVNTTILALIPKKLE 937

Query: 265 LMSLNDYISISVIGCMYKIVSKVLTTRLSKVM 296
              + DY  IS    +YK++SK++  RL  V+
Sbjct: 938 AKEMKDYRPISCCNVIYKVISKIIANRLKHVL 969


>gb|AAV44086.1| hypothetical protein [Oryza sativa (japonica cultivar-group)]
          Length = 1237

 Score =  103 bits (257), Expect = 6e-21
 Identities = 81/294 (27%), Positives = 133/294 (44%), Gaps = 20/294 (6%)

Query: 20   WLQNHAFGECVST-WSSFDIQGWGAYTFKEKLKRLKLKLNQWEKENVGDLDKICKDPVTR 78
            WL    F E V   WSS D        ++ K++RL+  L  W K + G   K  K  + +
Sbjct: 890  WLLRDGFVEMVKEIWSSVDEGNTAMERWQAKIRRLRQHLRGWSKHSSGLYKKEKKKILDK 949

Query: 79   INALDIKEGDGNLSSQEQKQRDDFLVEYWKVAKFNDSLLFQKSRDRWVKDGDSNTKYFHN 138
            ++ LD K  +  LS +E   R         + +  +   +Q+++ + + +GDSNTKYFH 
Sbjct: 950  LDLLDKKAENSLLSPEELDIRWFCRNRLSSILREEEIKWYQRAKSKDILEGDSNTKYFHL 1009

Query: 139  SVNWRRRTNAIRGLAVDGEWVEDPKVVKSKMIEFFEAQFTSNPEVGVFLEGTPFR----- 193
              N + R   I  L      ++    +KS +  +++  F   P     L+    R     
Sbjct: 1010 VANGKHRKTRIFQLQDSDHLIDGDANLKSHITTYYKGLF--GPPDDSLLQFDESRVADIP 1067

Query: 194  SISDEDNLALTQTFNLEEIRTAVWECEGDRSLGPD------------VLKVDILRVLKDF 241
             IS  +N ALTQ F  +EI+ A+++ E +++ GPD            V+K D+L + K+F
Sbjct: 1068 QISLLENEALTQDFTEKEIKKAIFQMEHNKASGPDGFPAEFYQVFWNVIKNDLLDLFKEF 1127

Query: 242  HRNGVWPKGGNSSFITLIPNISNLMSLNDYISISVIGCMYKIVSKVLTTRLSKV 295
            H   +     N   I L+P     M +  Y  I ++   +KI +KV T R+  V
Sbjct: 1128 HNGSLPLFSLNFGTIILLPKCVEAMKIQQYRPICLLNVSFKIFTKVATNRVMSV 1181


>gb|AAC13599.1| similar to reverse transcriptase (Pfam: transcript_fact.hmm, score:
           72.31) [Arabidopsis thaliana] gi|7488318|pir||T01191
           RNA-directed DNA polymerase homolog F21E10.5 -
           Arabidopsis thaliana
          Length = 928

 Score =  103 bits (256), Expect = 8e-21
 Identities = 76/272 (27%), Positives = 122/272 (43%), Gaps = 21/272 (7%)

Query: 44  YTFKEKLKRLKLKLNQWEKENVGDLDKICKDPVTRINALDIKEGDGNLSSQEQKQRDDFL 103
           + F +KLK LK  L    KE +G+L K  K+    +      +   N S    ++ ++  
Sbjct: 173 FRFSKKLKGLKPLLRNLGKERLGNLVKQTKEAFETLCQKQAMKM-ANPSPSSMQEENEAY 231

Query: 104 VEYWKVAKFNDSLLFQKSRDRWVKDGDSNTKYFHNSVNWRRRTNAIRGLAV-DGEWVEDP 162
            ++  +A   +  L Q+S+  W+  GD N K FH +V  R   N+IR +   DG      
Sbjct: 232 AKWDHIAVLEEKFLKQRSKLHWLDIGDRNNKAFHRAVVAREAQNSIREIICHDGSVASQE 291

Query: 163 KVVKSKMIEFFEA--QFTSNPEVGVFLEGT----PFRSISDEDNLALTQTFNLEEIRTAV 216
           + +K++    F    Q   N   G+ +E      P+R  SD D   LT   + EEI   V
Sbjct: 292 EKIKTEAEHHFREFLQLIPNDFEGIAVEELQDLLPYRC-SDSDKEMLTNHVSAEEIHKVV 350

Query: 217 WECEGDRSLGPD------------VLKVDILRVLKDFHRNGVWPKGGNSSFITLIPNISN 264
           +    D+S GPD            ++  + +  ++ F   G  PKG NS+ + LIP    
Sbjct: 351 FSMPNDKSPGPDGYTAEFYKGAWNIIGAEFILAIQSFFAKGFLPKGINSTILALIPKKKE 410

Query: 265 LMSLNDYISISVIGCMYKIVSKVLTTRLSKVM 296
              + DY  IS    +YK++SK++  RL  V+
Sbjct: 411 AKEMKDYRPISCCNVLYKVISKIIANRLKLVL 442


>gb|AAV32224.1| hypothetical protein [Oryza sativa (japonica cultivar-group)]
            gi|45267888|gb|AAS55787.1| hypothetical protein [Oryza
            sativa (japonica cultivar-group)]
          Length = 1936

 Score =  101 bits (252), Expect = 2e-20
 Identities = 73/261 (27%), Positives = 123/261 (46%), Gaps = 21/261 (8%)

Query: 50   LKRLKLKLNQWEKENVGDLDKICKDPVTRINALDIKEGDGNLSSQEQKQRDDFLVEYWKV 109
            L R+   L  W K  V ++ K  +    ++  L       N +    +Q  D + E   +
Sbjct: 916  LGRVMSALRSWSKTKVKNVGKELEKARKKLEDLIAS----NAARSSIRQATDHMNE---M 968

Query: 110  AKFNDSLLFQKSRDRWVKDGDSNTKYFHNSVNWRRRTNAIRGLAVDGEWVEDP-KVVKSK 168
                + L  Q+SR  W+K+GD NT++FH+   WR + N I  L  +   +     V+++ 
Sbjct: 969  LYREEMLWLQRSRVNWLKEGDRNTRFFHSRAVWRAKKNKISKLRDENGAIHSTTSVLETM 1028

Query: 169  MIEFFEAQFTSNPEVGVFLEGTPFRS-ISDEDNLALTQTFNLEEIRTAVWECEGDRSLGP 227
              E+F+  + ++P +        F+  ++D  N  L Q F  EEI  A+++    +S  P
Sbjct: 1029 ATEYFQGVYKADPSLNPESVTRLFQEKVTDAMNEKLCQEFKEEEIAQAIFQIGPLKSPRP 1088

Query: 228  D------------VLKVDILRVLKDFHRNGVWPKGGNSSFITLIPNISNLMSLNDYISIS 275
            D             LK DI+  +++F ++G+ PKG N + I LIP     + L DY  IS
Sbjct: 1089 DGFPARFYQRNWGTLKSDIILAVRNFFQSGLMPKGVNDTAIVLIPKKDQPIDLKDYRPIS 1148

Query: 276  VIGCMYKIVSKVLTTRLSKVM 296
            +   +YK+VSK L  RL  ++
Sbjct: 1149 LCNVVYKVVSKCLVNRLRPIL 1169


>emb|CAB78008.1| putative protein [Arabidopsis thaliana] gi|7321072|emb|CAB82119.1|
           putative protein [Arabidopsis thaliana]
           gi|25407453|pir||H85088 hypothetical protein AT4g08830
           [imported] - Arabidopsis thaliana
          Length = 947

 Score =  101 bits (251), Expect = 3e-20
 Identities = 76/301 (25%), Positives = 141/301 (46%), Gaps = 45/301 (14%)

Query: 26  FGECVSTWSSFDIQGWG-AYTFKEK-------LKRLKLKLNQWEKENVGDLDKICKDPVT 77
           FGE ++  S  D+   G  YT+K          KRL  +L +W ++  GD+ K  ++ + 
Sbjct: 8   FGEWINRVSLIDMGFSGNKYTWKRGRVENTFVAKRLD-RLKKWNRDVFGDVKKKKEELMR 66

Query: 78  RI----NALDIKEGDGNLSSQEQKQRDDFLVEYWKVAKFNDSLLFQKSRDRWVKDGDSNT 133
            I    +ALD+ + D  L  +E   +                  F KSR++W+  GD NT
Sbjct: 67  EIQVVQDALDVHQSDDMLRKEEDLIK-----------------AFDKSREKWIALGDRNT 109

Query: 134 KYFHNSVNWRRRTNAIRGLA-VDGEWVEDPKVVKSKMIEFFEAQFTSNPEVGVF--LEGT 190
            YFH +   RRR N +  L   +G W+ D K +++  +++++  ++ +  + V   L   
Sbjct: 110 NYFHTTTIIRRRQNRVERLHNEEGTWIFDAKELEALAVQYYQRLYSMDDVLQVVNPLPQD 169

Query: 191 PFRSISDEDNLALTQTFNLEEIRTAVWECEGDRSLGPD------------VLKVDILRVL 238
               ++ E+ L+L + F   E+  A+      ++ GPD            V+   ++R  
Sbjct: 170 GLERLTREEVLSLNKPFLATEVEVAIRSMGKYKAPGPDGYQPIFYQSCWEVVGNSVIRFA 229

Query: 239 KDFHRNGVWPKGGNSSFITLIPNISNLMSLNDYISISVIGCMYKIVSKVLTTRLSKVMGH 298
            DF  +G+ P   N + + LIP +     +N +  IS+   ++K+++K++  RL KV+G 
Sbjct: 230 LDFFSSGILPPQTNDALVVLIPKVPKPERMNQFRPISLCNAIFKMITKMMVLRLKKVIGK 289

Query: 299 I 299
           +
Sbjct: 290 L 290


>gb|AAK71569.2| putative reverse transcriptase [Oryza sativa (japonica
           cultivar-group)] gi|50918647|ref|XP_469720.1| putative
           reverse transcriptase [Oryza sativa (japonica
           cultivar-group)]
          Length = 1833

 Score =  101 bits (251), Expect = 3e-20
 Identities = 77/308 (25%), Positives = 140/308 (45%), Gaps = 29/308 (9%)

Query: 11  LKPFRNRNCWLQNHAFGECVSTWSSFDIQGWGAYTFKEKLKRLKLKLNQWEKENVGDLDK 70
           +K  R    W +  +  E +    +            +K+K    KL  W K+ +G++ K
Sbjct: 220 MKIMRYEEVWERESSLPEVIQEAWTMGADASTLGDINDKMKVTMTKLVSWSKDKIGNVRK 279

Query: 71  ICKDPVTRINAL---DIKEGDGNLSSQEQKQRDDFLVE--YWKVAKFNDSLLFQKSRDRW 125
             KD   ++  L    + + D  + S +++  +    E  +WK          Q+SR  W
Sbjct: 280 KIKDLREKLGELRNIGLLDTDNEVHSVKKELEEMLHREEIWWK----------QRSRITW 329

Query: 126 VKDGDSNTKYFHNSVNWRRRTNAIRGLAV-DGEWVEDPKVVKSKMIEFFEAQFTSNPEVG 184
           +K+GD NT+YFH   +WR + N I+ L   DG    + K +K     FF+  +T +  + 
Sbjct: 330 LKEGDLNTRYFHLKASWRAKKNKIKKLKKNDGSTTMNKKEMKEINRSFFQQLYTKDDNLN 389

Query: 185 -VFLEGTPFRSISDEDNLALTQTFNLEEIRTAVWECEGDRSLGPD------------VLK 231
            V L       IS++ N  L + F  EEI  A+++    ++ GPD            +LK
Sbjct: 390 PVNLLNMFHEKISEQMNADLIKPFTNEEISDALFQIGPLKAPGPDGFPARFLQRNWGLLK 449

Query: 232 VDILRVLKDFHRNGVWPKGGNSSFITLIPNISNLMSLNDYISISVIGCMYKIVSKVLTTR 291
            +++  +++F  + V  +G N + I +IP  +    + D+  IS+   +YK+V+K L  R
Sbjct: 450 GEVIAAVRNFFEDEVMQEGVNDTVIVMIPKKNLAEDMKDFRPISLCNVVYKVVAKCLVNR 509

Query: 292 LSKVMGHI 299
           +  ++  I
Sbjct: 510 MRPMLQEI 517


>gb|AAD21699.1| Contains reverse transcriptase domain (rvt) PF|00078. [Arabidopsis
           thaliana] gi|25518658|pir||F86436 hypothetical protein
           F28K20.4 - Arabidopsis thaliana
          Length = 1253

 Score =  101 bits (251), Expect = 3e-20
 Identities = 82/315 (26%), Positives = 146/315 (46%), Gaps = 33/315 (10%)

Query: 12  KPFRNRNCWLQNHAFGECVST-WSSFDIQGWGAYTFKEKLKRLKLKLNQWEKENVGDLDK 70
           +PFR  N  LQN  F   V   W S ++ G   +   +KLK LK  +  +  EN  +L+K
Sbjct: 196 RPFRFYNFLLQNPDFISLVGELWYSINVVGSSMFKMSKKLKALKNPIRTFSMENFSNLEK 255

Query: 71  ICKDP----VTRINALDIKEGDGNLSSQEQKQRDDFLVEYWKVAKFNDSLLFQKSRDRWV 126
             K+     + R N         N + + + QR     ++  + K  +S   Q+SR  W+
Sbjct: 256 RVKEAHNLVLYRQNKTLSDPTIPNAALEMEAQR-----KWLILVKAEESFFCQRSRVTWM 310

Query: 127 KDGDSNTKYFHNSVNWRRRTNAIRGLAVD-GEWVEDPKVVKSKMIEFFEAQFTSNPEVGV 185
            +GDSNT YFH   + R+  N I  +  D G  ++    +K   IE+F           +
Sbjct: 311 GEGDSNTSYFHRMADSRKAVNTIHIIIDDNGVKIDTQLGIKEHCIEYFSNLLGGEVGPPM 370

Query: 186 FLEG-----TPFRSISDEDNLALTQTFNLEEIRTAVWECEGDRSLGPD------------ 228
            ++       PFR   D+    L  +F+ ++I++A +    +++ GPD            
Sbjct: 371 LIQEDFDLLLPFRCSHDQKK-ELAMSFSRQDIKSAFFSFPSNKTSGPDGFPVEFFKETWS 429

Query: 229 VLKVDILRVLKDFHRNGVWPKGGNSSFITLIPNISNLMSLNDY--ISISVIG--CMYKIV 284
           V+  ++   + +F  + V  K  N++ + LIP I+N   +ND+  IS +  G   +YK++
Sbjct: 430 VIGTEVTDAVSEFFTSSVLLKQWNATTLVLIPKITNASKMNDFRPISCNDFGPITLYKVI 489

Query: 285 SKVLTTRLSKVMGHI 299
           +++LT RL  ++  +
Sbjct: 490 ARLLTNRLQCLLSQV 504


>emb|CAE02147.1| OSJNBa0081G05.2 [Oryza sativa (japonica cultivar-group)]
            gi|50923489|ref|XP_472105.1| OSJNBa0081G05.2 [Oryza
            sativa (japonica cultivar-group)]
          Length = 1711

 Score =  100 bits (250), Expect = 4e-20
 Identities = 72/261 (27%), Positives = 124/261 (46%), Gaps = 21/261 (8%)

Query: 50   LKRLKLKLNQWEKENVGDLDKICKDPVTRINALDIKEGDGNLSSQEQKQRDDFLVEYWKV 109
            L R+   L  W K  V ++ +  +    ++  L       N +    +Q  D + E   +
Sbjct: 828  LGRVMSALRSWGKTKVKNVGRELEKARKKLEDLIAS----NAARSSIRQATDHMNE---M 880

Query: 110  AKFNDSLLFQKSRDRWVKDGDSNTKYFHNSVNWRRRTNAIRGLAVDGEWVED-PKVVKSK 168
                + L  Q+SR  W+K+GD NT++FH+   WR + N I  L  +   +     V+++ 
Sbjct: 881  LYREEMLWLQRSRVNWLKEGDRNTRFFHSRAVWRAKKNKISKLRDENGAIHSMTSVLETM 940

Query: 169  MIEFFEAQFTSNPEVGVFLEGTPFRS-ISDEDNLALTQTFNLEEIRTAVWECEGDRSLGP 227
              E+F+  + ++P +        F+  ++D  N  L Q F  EEI  A+++    +S GP
Sbjct: 941  ATEYFQEVYKADPSLNPESVTRLFQEKVTDAMNEKLCQEFKEEEIAQAIFQIGPLKSPGP 1000

Query: 228  D------------VLKVDILRVLKDFHRNGVWPKGGNSSFITLIPNISNLMSLNDYISIS 275
            D             LK DI+  +++F ++G+ P+G N + I LIP     + L DY  IS
Sbjct: 1001 DGFPARFYQRNWGTLKSDIILAVRNFFQSGLMPEGVNDTAIVLIPKKDQPIDLKDYRPIS 1060

Query: 276  VIGCMYKIVSKVLTTRLSKVM 296
            +   +YK+VSK L  RL  ++
Sbjct: 1061 LCNVVYKVVSKCLVNRLRPIL 1081


>emb|CAE04660.2| OSJNBa0061G20.16 [Oryza sativa (japonica cultivar-group)]
          Length = 1285

 Score =  100 bits (250), Expect = 4e-20
 Identities = 72/261 (27%), Positives = 124/261 (46%), Gaps = 21/261 (8%)

Query: 50   LKRLKLKLNQWEKENVGDLDKICKDPVTRINALDIKEGDGNLSSQEQKQRDDFLVEYWKV 109
            L R+   L  W K  V ++ +  +    ++  L       N +    +Q  D + E   +
Sbjct: 828  LGRVMSALRSWGKTKVKNVGRELEKARKKLEDLIAS----NAARSSIRQATDHMNE---M 880

Query: 110  AKFNDSLLFQKSRDRWVKDGDSNTKYFHNSVNWRRRTNAIRGLAVDGEWVED-PKVVKSK 168
                + L  Q+SR  W+K+GD NT++FH+   WR + N I  L  +   +     V+++ 
Sbjct: 881  LYREEMLWLQRSRVNWLKEGDRNTRFFHSRAVWRAKKNKISKLRDENGAIHSMTSVLETM 940

Query: 169  MIEFFEAQFTSNPEVGVFLEGTPFRS-ISDEDNLALTQTFNLEEIRTAVWECEGDRSLGP 227
              E+F+  + ++P +        F+  ++D  N  L Q F  EEI  A+++    +S GP
Sbjct: 941  ATEYFQEVYKADPSLNPESVTRLFQEKVTDAMNEKLCQEFKEEEIAQAIFQIGPLKSPGP 1000

Query: 228  D------------VLKVDILRVLKDFHRNGVWPKGGNSSFITLIPNISNLMSLNDYISIS 275
            D             LK DI+  +++F ++G+ P+G N + I LIP     + L DY  IS
Sbjct: 1001 DGFPARFYQRNWGTLKSDIILAVRNFFQSGLMPEGVNDTAIVLIPKKDQPIDLKDYRPIS 1060

Query: 276  VIGCMYKIVSKVLTTRLSKVM 296
            +   +YK+VSK L  RL  ++
Sbjct: 1061 LCNVVYKVVSKCLVNRLRPIL 1081


>dbj|BAB09379.1| non-LTR retroelement reverse transcriptase-like protein
           [Arabidopsis thaliana]
          Length = 1223

 Score =  100 bits (249), Expect = 5e-20
 Identities = 87/309 (28%), Positives = 134/309 (43%), Gaps = 25/309 (8%)

Query: 11  LKPFRNRNCWLQNHAFGECVST-WSSFD---IQGWGAYTFKEKLKRLKLKLNQWEKENVG 66
           LKPF+  N       F   VST W   +   +     + F + LK LK K+    ++ +G
Sbjct: 248 LKPFKFVNALTDMEDFKPMVSTYWKDTEPLILSTSTLFRFSKNLKGLKPKIRSMARDRLG 307

Query: 67  DLDKICKDPVTRINALDIKEGDGNLSSQEQKQRDDFLVEYWKVAKFNDSLLFQKSRDRWV 126
           +L K   +   +I          N SS   ++ +     + +VA   +  L QKS+  W 
Sbjct: 308 NLSKKANEAY-KILCAKQHVNLTNPSSMAMEEENAAYSRWDRVAILEEKYLKQKSKLHWC 366

Query: 127 KDGDSNTKYFHNSVNWRRRTNAIRG-LAVDGEWVEDPKVVKSKMIEFFEA--QFTSNPEV 183
           + GD NTK FH +   R   N IR  L+ DG        +K++   FF    Q   N   
Sbjct: 367 QVGDQNTKAFHRAAAAREAHNTIREILSNDGIVKTKGDEIKAEAERFFREFLQLIPNDFE 426

Query: 184 GVFL----EGTPFRSISDEDNLALTQTFNLEEIRTAVWECEGDRSLGPD----------- 228
           GV +    +  P R  SD D  +L +    EEIR  ++    D+S GPD           
Sbjct: 427 GVTITELQQLLPVRC-SDADQQSLIRPVTAEEIRKVLFRMPSDKSPGPDGYTSEFFKATW 485

Query: 229 -VLKVDILRVLKDFHRNGVWPKGGNSSFITLIPNISNLMSLNDYISISVIGCMYKIVSKV 287
            ++  +    ++ F   G  PKG NS+ + LIP  +    + DY  IS    +YK++SK+
Sbjct: 486 EIIGDEFTLAVQSFFTKGFLPKGINSTILALIPKKTEAREMKDYRPISCCNVLYKVISKI 545

Query: 288 LTTRLSKVM 296
           +  RL  V+
Sbjct: 546 IANRLKLVL 554


>gb|AAG51783.1| reverse transcriptase, putative; 16838-20266 [Arabidopsis thaliana]
           gi|25405244|pir||E96519 probable reverse transcriptase,
           16838-20266 [imported] - Arabidopsis thaliana
          Length = 1142

 Score = 99.0 bits (245), Expect = 1e-19
 Identities = 82/301 (27%), Positives = 141/301 (46%), Gaps = 23/301 (7%)

Query: 14  FRNRNCWLQNHAFGECVSTWSSFDIQGWGAYTFKEKLKRLKLKLNQWEKENVGDLDKICK 73
           FR    W+      E +S   + D  G+    F EKL   +  +++W K     L    +
Sbjct: 24  FRFDKRWIGKDGLLEAISQGWNLD-SGFREGQFVEKLTNCRRAISKWRKS----LIPFGR 78

Query: 74  DPVTRINA-LDIKEGDGNLSSQEQKQRDDFLVEYWKVAKFNDSLLFQKSRDRWVKDGDSN 132
             +  + A LD+ + D + S +E  +    L E ++     +   +QKSR  W+K GD+N
Sbjct: 79  QTIEDLKAELDVAQRDDDRSREEITELTLRLKEAYRD---EEQYWYQKSRSLWMKLGDNN 135

Query: 133 TKYFHNSVNWRRRTNAIRGLAVD-GEWVEDPKVVKSKMIEFFEAQFTS-NPEVGVFLEGT 190
           +K+FH     RR  N I GL  + G W  +   +++  + +F+  FT+ NP+V     G 
Sbjct: 136 SKFFHALTKQRRARNRITGLHDENGIWSIEDDDIQNIAVSYFQNLFTTANPQVFDEALGE 195

Query: 191 PFRSISDEDNLALTQTFNLEEIRTAVWECEGDRSLGPD------------VLKVDILRVL 238
               I+D  N  LT      E+R A++    +++ GPD            ++K D+L ++
Sbjct: 196 VQVLITDRINDLLTADATECEVRAALFMIHPEKAPGPDGMTALFFQKSWAIIKSDLLSLV 255

Query: 239 KDFHRNGVWPKGGNSSFITLIPNISNLMSLNDYISISVIGCMYKIVSKVLTTRLSKVMGH 298
             F + GV+ K  N++ I LIP       + +   IS+    YK++SK+L  RL  V+ +
Sbjct: 256 NSFLQEGVFDKRLNTTNICLIPKTERPTRMTELRPISLCNVGYKVISKILCQRLKTVLPN 315

Query: 299 I 299
           +
Sbjct: 316 L 316


>gb|AAC63844.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
           thaliana] gi|25408124|pir||C84716 hypothetical protein
           At2g31080 [imported] - Arabidopsis thaliana
          Length = 1231

 Score = 98.2 bits (243), Expect = 3e-19
 Identities = 71/263 (26%), Positives = 125/263 (46%), Gaps = 24/263 (9%)

Query: 56  KLNQWEKENVGDL----DKICKDPVTRINALDIKEGDGNLSSQEQKQRDDFLVEYWKVAK 111
           KL +W +E  GD+    +K+  D     + L +   D  L+ +E       L E   V +
Sbjct: 139 KLRKWNREVFGDIHVRKEKLVADIKEVQDLLGVVLSDDLLAKEEV-----LLKEMDLVLE 193

Query: 112 FNDSLLFQKSRDRWVKDGDSNTKYFHNSVNWRRRTNAIRGLAVDGE-WVEDPKVVKSKMI 170
             ++L FQKSR+++++ GD NT +FH S   RRR N I  L  D + WV D   +++  +
Sbjct: 194 QEETLWFQKSREKYIELGDRNTTFFHTSTIIRRRRNRIESLKGDDDRWVTDKVELEAMAL 253

Query: 171 EFFEAQFTSN--PEVGVFLEGTPFRSISDEDNLALTQTFNLEEIRTAVWECEGDRSLGPD 228
            +++  ++     EV   L    F SIS+ +  AL Q F   E+ +AV      ++ GPD
Sbjct: 254 TYYKRLYSLEDVSEVRNMLPTGGFASISEAEKAALLQAFTKAEVVSAVKSMGRFKAPGPD 313

Query: 229 ------------VLKVDILRVLKDFHRNGVWPKGGNSSFITLIPNISNLMSLNDYISISV 276
                        +   + R + +F   GV P   N + + LI  ++    +  +  +S+
Sbjct: 314 GYQPVFYQQCWETVGPSVTRFVLEFFETGVLPASTNDALLVLIAKVAKPERIQQFRPVSL 373

Query: 277 IGCMYKIVSKVLTTRLSKVMGHI 299
              ++KI++K++ TRL  V+  +
Sbjct: 374 CNVLFKIITKMMVTRLKNVISKL 396


>gb|AAP54692.1| putative reverse transcriptase [Oryza sativa (japonica
           cultivar-group)] gi|37536206|ref|NP_922405.1| putative
           reverse transcriptase [Oryza sativa (japonica
           cultivar-group)] gi|27311287|gb|AAO00713.1|
           retrotransposon protein, putative, unclassified [Oryza
           sativa (japonica cultivar-group)]
          Length = 1557

 Score = 98.2 bits (243), Expect = 3e-19
 Identities = 62/197 (31%), Positives = 101/197 (50%), Gaps = 22/197 (11%)

Query: 114 DSLLFQKSRDRWVKDGDSNTKYFHNSVNWRRRTNAIRGLA-VDGEWVEDPKVVKSKMIEF 172
           + L  Q+SR  W+K+GD NTK+FHN V WR + N I  L    G +     V++    ++
Sbjct: 721 EMLWLQRSRVNWLKEGDRNTKFFHNRVAWRAKKNKITKLRDAAGTFHRSKMVMEQMATQY 780

Query: 173 FEAQFTSNPEVGVFLEGTPFR-----SISDEDNLALTQTFNLEEIRTAVWECEGDRSLGP 227
           F+  FT++P     L+ +P        +++E N  L   F+ +EI  A+++    ++ G 
Sbjct: 781 FKDMFTADPN----LDHSPVTRLIQPKVTEEMNNRLCSEFSEDEIANALFQIGPLKAPGT 836

Query: 228 D------------VLKVDILRVLKDFHRNGVWPKGGNSSFITLIPNISNLMSLNDYISIS 275
           D             +K DI+R +K+F  +G+  +G N + I LIP I     L D+  IS
Sbjct: 837 DGFLARFYQRNWGCIKNDIVRAVKEFFHSGIMLEGVNDTAIVLIPKIEQPRDLRDFRPIS 896

Query: 276 VIGCMYKIVSKVLTTRL 292
           +   +YK++SK L  RL
Sbjct: 897 LCNVIYKVLSKCLVNRL 913


>dbj|BAA97290.1| non-LTR retroelement reverse transcriptase-like [Arabidopsis
           thaliana]
          Length = 1072

 Score = 97.4 bits (241), Expect = 4e-19
 Identities = 81/321 (25%), Positives = 145/321 (44%), Gaps = 47/321 (14%)

Query: 12  KPFRNRNCWLQNHAFGECV-STWSSFDIQGWGAYTFKEKLKRLKLKLNQWEKENVGDLDK 70
           +PF+  N  L+N  F   V   W S ++ G   Y   +KLK +K  +  + + N   ++ 
Sbjct: 107 RPFKFFNFLLKNEDFLNVVMDNWFSTNVVGSSMYRVSKKLKAMKKPIKDFSRLNYSGIEL 166

Query: 71  ICKDP----VTRINALDIKEGDGNLSSQEQKQRDDFLVEYWKVAKFNDSLLFQKSRDRWV 126
             K+     +T  N         N + + + QR   L+   +     +S   Q+SR  W 
Sbjct: 167 RTKEAHELLITCQNLTLANPSVSNAALELEAQRKWVLLSCAE-----ESFFHQRSRVSWF 221

Query: 127 KDGDSNTKYFHNSVNWRRRTNAIRGLA-VDGEWVEDPKVVKSKMIEFFEAQFTSNPEVGV 185
            +GDSNT YFH  V+ R+  N I  L   +G  ++  + +    + ++E    S      
Sbjct: 222 AEGDSNTHYFHRMVDSRKSFNTINSLVDSNGLLIDSQQGILDHCVTYYERLLGSIE---- 277

Query: 186 FLEGTPFRSISDEDNLALT------------QTFNLEEIRTAVWECEGDRSLGPD----- 228
               +PF    ++ NL LT            ++F  +EI+ A      +++ GPD     
Sbjct: 278 ----SPFSMEQEDMNLLLTYRCSQDQCSELEKSFTDDEIKAAFKSLPRNKTSGPDGYSVE 333

Query: 229 -------VLKVDILRVLKDFHRNGVWPKGGNSSFITLIPNISNLMSLNDYISISVIGCMY 281
                  ++  ++L  + +F  +G   K  N++ + LIP  SN  +++++  IS +  +Y
Sbjct: 334 FFRDTWSIIGPEVLAAIHEFFDSGQLLKQWNATTLVLIPKTSNACTISEFRPISCLNTLY 393

Query: 282 KIVSKVLTTR----LSKVMGH 298
           K++SK+LT+R    LS V+GH
Sbjct: 394 KVISKLLTSRLQGLLSAVIGH 414


  Database: nr
    Posted date:  Jul 5, 2005 12:34 AM
  Number of letters in database: 863,360,394
  Number of sequences in database:  2,540,612
  
Lambda     K      H
   0.325    0.140    0.445 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 516,551,611
Number of Sequences: 2540612
Number of extensions: 21463698
Number of successful extensions: 64356
Number of sequences better than 10.0: 309
Number of HSP's better than 10.0 without gapping: 191
Number of HSP's successfully gapped in prelim test: 118
Number of HSP's that attempted gapping in prelim test: 63848
Number of HSP's gapped (non-prelim): 342
length of query: 299
length of database: 863,360,394
effective HSP length: 127
effective length of query: 172
effective length of database: 540,702,670
effective search space: 93000859240
effective search space used: 93000859240
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 75 (33.5 bits)


Lotus: description of TM0302a.1