BLAST2 result
BLASTP 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TM0301a.2
(80 letters)
Database: nr
2,540,612 sequences; 863,360,394 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
dbj|BAB33256.1| hypothetical protein [Lotus corniculatus var. ja... 91 6e-18
dbj|BAC98858.1| hypothetical protein [Brassica napus] 85 4e-16
emb|CAA77438.1| Ycf2 protein [Nicotiana tabacum] gi|2924274|emb|... 82 3e-15
emb|CAD28786.1| Ycf2 protein [Calycanthus floridus var. glaucus]... 82 3e-15
emb|CAB88802.1| ycf2 protein [Spinacia oleracea] gi|11497598|ref... 82 3e-15
emb|CAC88108.1| ycf2 protein [Atropa belladonna] gi|28261781|ref... 82 3e-15
emb|CAC88087.1| ycf2 protein [Atropa belladonna] gi|28261760|ref... 82 3e-15
emb|CAB67242.1| Ycf2 protein [Oenothera elata subsp. hookeri] gi... 82 3e-15
dbj|BAD93471.1| ycf2 protein [Silene latifolia] 82 3e-15
pir||S01446 hypothetical protein 2131 - spinach chloroplast gi|1... 82 3e-15
pir||A05205 hypothetical protein 1708 - common tobacco chloroplast 82 3e-15
dbj|BAA84449.1| ycf2 [Arabidopsis thaliana] gi|5881737|dbj|BAA84... 82 3e-15
ref|YP_087028.1| ycf2 protein [Panax ginseng] gi|52220853|ref|YP... 81 8e-15
emb|CAD45168.1| Ycf2 protein [Amborella trichopoda] gi|34481672|... 80 1e-14
emb|CAJ00820.1| ycf2 [Cucumis sativus] 77 1e-13
emb|CAA47848.1| unnamed protein product [Cuscuta reflexa] gi|485... 75 3e-13
emb|CAF28659.1| ycf2 [Nymphaea alba] gi|50250372|emb|CAF28638.1|... 75 3e-13
emb|CAA35832.1| hypothetical protein [Vicia faba] gi|140553|sp|P... 75 6e-13
pir||S08496 hypothetical protein 2 - fava bean chloroplast (frag... 75 6e-13
emb|CAJ00802.1| Ycf2 [Cucumis sativus] 72 5e-12
>dbj|BAB33256.1| hypothetical protein [Lotus corniculatus var. japonicus]
gi|13359021|dbj|BAB33238.1| hypothetical protein [Lotus
corniculatus var. japonicus] gi|13518498|ref|NP_084856.1|
Ycf2 [Lotus corniculatus var. japonicus]
gi|13518480|ref|NP_084839.1| ycf2 [Lotus corniculatus
var. japonicus] gi|23822370|sp|Q9B1K6|YCF2_LOTJA Protein
ycf2
Length = 2298
Score = 91.3 bits (225), Expect = 6e-18
Identities = 44/46 (95%), Positives = 44/46 (95%)
Query: 1 FLLLIHRQRWLRPNNSLSNGFFRSNTLSESYQYLSNMFLSNGTLLD 46
F LLIHRQRWLR NNSLSNGFFRSNTLSESYQYLSNMFLSNGTLLD
Sbjct: 2224 FELLIHRQRWLRTNNSLSNGFFRSNTLSESYQYLSNMFLSNGTLLD 2269
>dbj|BAC98858.1| hypothetical protein [Brassica napus]
Length = 100
Score = 85.1 bits (209), Expect = 4e-16
Identities = 41/46 (89%), Positives = 43/46 (93%)
Query: 1 FLLLIHRQRWLRPNNSLSNGFFRSNTLSESYQYLSNMFLSNGTLLD 46
F LLI RQRWLR N+SLSNGFFRSNTLSESYQYLSN+FLSNGTLLD
Sbjct: 33 FELLIQRQRWLRTNSSLSNGFFRSNTLSESYQYLSNLFLSNGTLLD 78
>emb|CAA77438.1| Ycf2 protein [Nicotiana tabacum] gi|2924274|emb|CAA77427.1| Ycf2
protein [Nicotiana tabacum] gi|11466033|ref|NP_054575.1|
Ycf2 [Nicotiana tabacum] gi|11466000|ref|NP_054542.1|
Ycf2 [Nicotiana tabacum] gi|3915961|sp|P09976|YCF2_TOBAC
Protein ycf2
Length = 2280
Score = 82.4 bits (202), Expect = 3e-15
Identities = 40/46 (86%), Positives = 43/46 (92%)
Query: 1 FLLLIHRQRWLRPNNSLSNGFFRSNTLSESYQYLSNMFLSNGTLLD 46
F LLI+RQRWLR N+SLSNG FRSNTLSESYQYLSN+FLSNGTLLD
Sbjct: 2213 FELLINRQRWLRTNSSLSNGSFRSNTLSESYQYLSNLFLSNGTLLD 2258
>emb|CAD28786.1| Ycf2 protein [Calycanthus floridus var. glaucus]
gi|32399422|emb|CAD28764.1| Ycf2 protein [Calycanthus
floridus var. glaucus] gi|32480909|ref|NP_862818.1| Ycf2
protein [Calycanthus floridus var. glaucus]
gi|32480886|ref|NP_862797.1| Ycf2 protein [Calycanthus
floridus var. glaucus] gi|47117498|sp|Q7Y667|YCF2_CALFE
Protein ycf2
Length = 2287
Score = 82.4 bits (202), Expect = 3e-15
Identities = 40/46 (86%), Positives = 42/46 (90%)
Query: 1 FLLLIHRQRWLRPNNSLSNGFFRSNTLSESYQYLSNMFLSNGTLLD 46
F LLIHRQRWLR N+SLSNG FRSNT SESYQYLSN+FLSNGTLLD
Sbjct: 2211 FELLIHRQRWLRTNSSLSNGSFRSNTPSESYQYLSNLFLSNGTLLD 2256
>emb|CAB88802.1| ycf2 protein [Spinacia oleracea] gi|11497598|ref|NP_055004.1| ycf2
protein [Spinacia oleracea]
gi|19855392|sp|P08973|YCF2_SPIOL Protein ycf2
Length = 2131
Score = 82.4 bits (202), Expect = 3e-15
Identities = 40/46 (86%), Positives = 43/46 (92%)
Query: 1 FLLLIHRQRWLRPNNSLSNGFFRSNTLSESYQYLSNMFLSNGTLLD 46
F LLI+RQRWLR N+SLSNG FRSNTLSESYQYLSN+FLSNGTLLD
Sbjct: 2048 FELLINRQRWLRTNSSLSNGSFRSNTLSESYQYLSNLFLSNGTLLD 2093
>emb|CAC88108.1| ycf2 protein [Atropa belladonna] gi|28261781|ref|NP_783294.1| Ycf2
[Atropa belladonna] gi|47117596|sp|Q8S8U1|YC2B_ATRBE
Protein ycf2
Length = 2291
Score = 82.4 bits (202), Expect = 3e-15
Identities = 40/46 (86%), Positives = 43/46 (92%)
Query: 1 FLLLIHRQRWLRPNNSLSNGFFRSNTLSESYQYLSNMFLSNGTLLD 46
F LLI+RQRWLR N+SLSNG FRSNTLSESYQYLSN+FLSNGTLLD
Sbjct: 2224 FELLINRQRWLRTNSSLSNGSFRSNTLSESYQYLSNLFLSNGTLLD 2269
>emb|CAC88087.1| ycf2 protein [Atropa belladonna] gi|28261760|ref|NP_783274.1| Ycf2
[Atropa belladonna] gi|47117597|sp|Q8S8V2|YC2A_ATRBE
Protein ycf2
Length = 2291
Score = 82.4 bits (202), Expect = 3e-15
Identities = 40/46 (86%), Positives = 43/46 (92%)
Query: 1 FLLLIHRQRWLRPNNSLSNGFFRSNTLSESYQYLSNMFLSNGTLLD 46
F LLI+RQRWLR N+SLSNG FRSNTLSESYQYLSN+FLSNGTLLD
Sbjct: 2224 FELLINRQRWLRTNSSLSNGSFRSNTLSESYQYLSNLFLSNGTLLD 2269
>emb|CAB67242.1| Ycf2 protein [Oenothera elata subsp. hookeri]
gi|6723793|emb|CAB67203.1| Ycf2 protein [Oenothera elata
subsp. hookeri] gi|13518414|ref|NP_084773.1| Ycf2 protein
[Oenothera elata subsp. hookeri]
gi|13518377|ref|NP_084736.1| Ycf2 protein [Oenothera
elata subsp. hookeri] gi|23822374|sp|Q9MEF2|YCF2_OENHO
Protein ycf2
Length = 2280
Score = 82.4 bits (202), Expect = 3e-15
Identities = 40/46 (86%), Positives = 43/46 (92%)
Query: 1 FLLLIHRQRWLRPNNSLSNGFFRSNTLSESYQYLSNMFLSNGTLLD 46
F LLI+RQRWLR N+SLSNG FRSNTLSESYQYLSN+FLSNGTLLD
Sbjct: 2213 FELLINRQRWLRTNSSLSNGSFRSNTLSESYQYLSNLFLSNGTLLD 2258
>dbj|BAD93471.1| ycf2 protein [Silene latifolia]
Length = 2223
Score = 82.4 bits (202), Expect = 3e-15
Identities = 40/46 (86%), Positives = 43/46 (92%)
Query: 1 FLLLIHRQRWLRPNNSLSNGFFRSNTLSESYQYLSNMFLSNGTLLD 46
F LLI+RQRWLR N+SLSNG FRSNTLSESYQYLSN+FLSNGTLLD
Sbjct: 2156 FELLINRQRWLRTNSSLSNGSFRSNTLSESYQYLSNLFLSNGTLLD 2201
>pir||S01446 hypothetical protein 2131 - spinach chloroplast
gi|12246|emb|CAA30743.1| unnamed protein product
[Spinacia oleracea]
Length = 2131
Score = 82.4 bits (202), Expect = 3e-15
Identities = 40/46 (86%), Positives = 43/46 (92%)
Query: 1 FLLLIHRQRWLRPNNSLSNGFFRSNTLSESYQYLSNMFLSNGTLLD 46
F LLI+RQRWLR N+SLSNG FRSNTLSESYQYLSN+FLSNGTLLD
Sbjct: 2048 FELLINRQRWLRTNSSLSNGSFRSNTLSESYQYLSNLFLSNGTLLD 2093
>pir||A05205 hypothetical protein 1708 - common tobacco chloroplast
Length = 1708
Score = 82.4 bits (202), Expect = 3e-15
Identities = 40/46 (86%), Positives = 43/46 (92%)
Query: 1 FLLLIHRQRWLRPNNSLSNGFFRSNTLSESYQYLSNMFLSNGTLLD 46
F LLI+RQRWLR N+SLSNG FRSNTLSESYQYLSN+FLSNGTLLD
Sbjct: 1641 FELLINRQRWLRTNSSLSNGSFRSNTLSESYQYLSNLFLSNGTLLD 1686
>dbj|BAA84449.1| ycf2 [Arabidopsis thaliana] gi|5881737|dbj|BAA84428.1| ycf2
[Arabidopsis thaliana] gi|7525097|ref|NP_051121.1| ycf2
[Arabidopsis thaliana] gi|7525076|ref|NP_051101.1| ycf2
[Arabidopsis thaliana] gi|6686165|sp|P56786|YCF2_ARATH
Protein ycf2
Length = 2294
Score = 82.0 bits (201), Expect = 3e-15
Identities = 39/46 (84%), Positives = 42/46 (90%)
Query: 1 FLLLIHRQRWLRPNNSLSNGFFRSNTLSESYQYLSNMFLSNGTLLD 46
F LLI RQRWLR N+SLSNGFFRSNT SESYQYLSN+F+SNGTLLD
Sbjct: 2227 FELLIQRQRWLRTNSSLSNGFFRSNTRSESYQYLSNLFISNGTLLD 2272
>ref|YP_087028.1| ycf2 protein [Panax ginseng] gi|52220853|ref|YP_087009.1| ycf2
protein [Panax ginseng] gi|51235377|gb|AAT98573.1| ycf2
protein [Panax ginseng] gi|51235356|gb|AAT98552.1| ycf2
protein [Panax ginseng]
Length = 2110
Score = 80.9 bits (198), Expect = 8e-15
Identities = 39/46 (84%), Positives = 42/46 (90%)
Query: 1 FLLLIHRQRWLRPNNSLSNGFFRSNTLSESYQYLSNMFLSNGTLLD 46
F LLI+RQRW R N+SLSNG FRSNTLSESYQYLSN+FLSNGTLLD
Sbjct: 2027 FELLINRQRWFRTNSSLSNGSFRSNTLSESYQYLSNLFLSNGTLLD 2072
>emb|CAD45168.1| Ycf2 protein [Amborella trichopoda] gi|34481672|emb|CAD45149.1| Ycf2
protein [Amborella trichopoda]
gi|34500977|ref|NP_904161.1| Ycf2 protein [Amborella
trichopoda] gi|34500957|ref|NP_904142.1| Ycf2 protein
[Amborella trichopoda] gi|47117378|sp|P61241|YCF2_AMBTC
Protein ycf2
Length = 2304
Score = 80.1 bits (196), Expect = 1e-14
Identities = 39/46 (84%), Positives = 41/46 (88%)
Query: 1 FLLLIHRQRWLRPNNSLSNGFFRSNTLSESYQYLSNMFLSNGTLLD 46
F LLIHRQRWL N+SLSNG FRSNT SESYQYLSN+FLSNGTLLD
Sbjct: 2228 FELLIHRQRWLSTNSSLSNGSFRSNTPSESYQYLSNLFLSNGTLLD 2273
>emb|CAJ00820.1| ycf2 [Cucumis sativus]
Length = 1988
Score = 77.0 bits (188), Expect = 1e-13
Identities = 41/48 (85%), Positives = 43/48 (89%), Gaps = 4/48 (8%)
Query: 3 LLIHRQRWLRP--NNSLS--NGFFRSNTLSESYQYLSNMFLSNGTLLD 46
LLIHRQRWLR N+SLS NGFFRSNTLSESYQYLSN+FLSNGTLLD
Sbjct: 1923 LLIHRQRWLRTRTNSSLSKSNGFFRSNTLSESYQYLSNLFLSNGTLLD 1970
>emb|CAA47848.1| unnamed protein product [Cuscuta reflexa] gi|485542|pir||S33913
hypothetical protein 740 (psbA 3' region) - southern
Asian dodder chloroplast gi|401495|sp|P32033|YCF2_CUSRE
Protein ycf2 gi|1096968|prf||2113216B ORF 740
Length = 740
Score = 75.5 bits (184), Expect = 3e-13
Identities = 38/46 (82%), Positives = 40/46 (86%)
Query: 1 FLLLIHRQRWLRPNNSLSNGFFRSNTLSESYQYLSNMFLSNGTLLD 46
F LIHRQR LR N+SLSN FRSNTLSESYQYLSN+FLSNGTLLD
Sbjct: 673 FEFLIHRQRCLRTNSSLSNRSFRSNTLSESYQYLSNLFLSNGTLLD 718
>emb|CAF28659.1| ycf2 [Nymphaea alba] gi|50250372|emb|CAF28638.1| ycf2 [Nymphaea alba]
gi|50346848|ref|YP_053219.1| ycf2 [Nymphaea alba]
gi|50346827|ref|YP_053198.1| ycf2 [Nymphaea alba]
Length = 2253
Score = 75.5 bits (184), Expect = 3e-13
Identities = 41/49 (83%), Positives = 43/49 (87%), Gaps = 3/49 (6%)
Query: 1 FLLLIHRQRWLRPN--NSLSNGFFRSNTLSESYQYLSNMFLS-NGTLLD 46
F LLIHRQRWLR N +SLSNG FRSNTLSESYQYLSN+FLS NGTLLD
Sbjct: 2174 FELLIHRQRWLRTNTNSSLSNGSFRSNTLSESYQYLSNLFLSNNGTLLD 2222
>emb|CAA35832.1| hypothetical protein [Vicia faba] gi|140553|sp|P15821|YCF2_VICFA
Protein ycf2
Length = 121
Score = 74.7 bits (182), Expect = 6e-13
Identities = 36/45 (80%), Positives = 39/45 (86%)
Query: 1 FLLLIHRQRWLRPNNSLSNGFFRSNTLSESYQYLSNMFLSNGTLL 45
F LLI RQRW R N+S+SN FFRSNTL ESYQYLSN+FLSNGTLL
Sbjct: 49 FKLLIDRQRWFRTNSSVSNEFFRSNTLYESYQYLSNLFLSNGTLL 93
>pir||S08496 hypothetical protein 2 - fava bean chloroplast (fragment)
Length = 120
Score = 74.7 bits (182), Expect = 6e-13
Identities = 36/45 (80%), Positives = 39/45 (86%)
Query: 1 FLLLIHRQRWLRPNNSLSNGFFRSNTLSESYQYLSNMFLSNGTLL 45
F LLI RQRW R N+S+SN FFRSNTL ESYQYLSN+FLSNGTLL
Sbjct: 49 FKLLIDRQRWFRTNSSVSNEFFRSNTLYESYQYLSNLFLSNGTLL 93
>emb|CAJ00802.1| Ycf2 [Cucumis sativus]
Length = 1990
Score = 71.6 bits (174), Expect = 5e-12
Identities = 38/48 (79%), Positives = 41/48 (85%), Gaps = 4/48 (8%)
Query: 3 LLIHRQRWL--RPNNSLSN--GFFRSNTLSESYQYLSNMFLSNGTLLD 46
LLIH QRWL R N+SLS GFFRSNTLS+SYQYLSN+FLSNGTLLD
Sbjct: 1925 LLIHHQRWLKTRTNSSLSKSKGFFRSNTLSQSYQYLSNLFLSNGTLLD 1972
Database: nr
Posted date: Jul 5, 2005 12:34 AM
Number of letters in database: 863,360,394
Number of sequences in database: 2,540,612
Lambda K H
0.350 0.154 0.482
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 107,198,249
Number of Sequences: 2540612
Number of extensions: 3133516
Number of successful extensions: 14917
Number of sequences better than 10.0: 32
Number of HSP's better than 10.0 without gapping: 32
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 14873
Number of HSP's gapped (non-prelim): 37
length of query: 80
length of database: 863,360,394
effective HSP length: 56
effective length of query: 24
effective length of database: 721,086,122
effective search space: 17306066928
effective search space used: 17306066928
T: 11
A: 40
X1: 14 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 38 (21.9 bits)
S2: 68 (30.8 bits)
Lotus: description of TM0301a.2