BLAST2 result
BLASTP 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TM0299.13
(259 letters)
Database: nr
2,540,612 sequences; 863,360,394 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
emb|CAB42558.1| SF2/ASF-like splicing modulator Srp30, variant 1... 340 3e-92
gb|AAU29329.1| ASF/SF2-like pre-mRNA splicing factor SRP32' [Zea... 337 1e-91
gb|AAU29328.1| ASF/SF2-like pre-mRNA splicing factor SRP32 [Zea ... 337 1e-91
emb|CAB42557.1| SF2/ASF-like splicing modulator Srp30 [Arabidops... 337 2e-91
gb|AAF02881.1| alternative splicing factor SF2a [Arabidopsis tha... 332 5e-90
gb|AAP13424.1| At1g02840 [Arabidopsis thaliana] gi|22135918|gb|A... 332 5e-90
gb|AAB71386.1| ASF/SF2 homolog [Arabidopsis thaliana] 332 5e-90
gb|AAD52613.1| splicing factor SR1E [Arabidopsis thaliana] 331 1e-89
gb|AAD52611.1| splicing factor SR1C [Arabidopsis thaliana] 331 1e-89
gb|AAD52610.1| splicing factor SR1B [Arabidopsis thaliana] 331 1e-89
gb|AAD52609.1| splicing factor SR1 [Arabidopsis thaliana] 331 1e-89
gb|AAU29331.1| ASF/SF2-like pre-mRNA splicing factor SRP30 [Zea ... 331 1e-89
gb|AAC24092.1| Contains similarity to pre-mRNA splicing factor (... 331 1e-89
gb|AAU29332.1| ASF/SF2-like pre-mRNA splicing factor SRP30' [Zea... 330 2e-89
ref|XP_479479.1| putative pre-mRNA splicing factor SF2 [Oryza sa... 329 5e-89
gb|AAU29334.1| ASF/SF2-like pre-mRNA splicing factor SRP31' [Zea... 327 2e-88
gb|AAU29333.1| ASF/SF2-like pre-mRNA splicing factor SRP31 [Zea ... 327 2e-88
gb|AAU29336.1| ASF/SF2-like pre-mRNA splicing factor SRP31''' [Z... 325 8e-88
ref|NP_567235.3| pre-mRNA splicing factor, putative / SR1 protei... 323 3e-87
gb|AAA32856.1| ribonucleoprotein gi|1582992|prf||2119375A Ser/Ar... 322 5e-87
>emb|CAB42558.1| SF2/ASF-like splicing modulator Srp30, variant 1 [Arabidopsis
thaliana]
Length = 256
Score = 340 bits (871), Expect = 3e-92
Identities = 190/261 (72%), Positives = 210/261 (79%), Gaps = 14/261 (5%)
Query: 1 MSSRSSRTIYVGNLPGDIRLREVEDIFYKFGPIVDIDLKIPPRPPGYAFVQFEDARDAED 60
MSSR +RTIYVGNLPGDIR EVED+FYK+GPIVDIDLKIPPRPPGYAFV+FED RDA+D
Sbjct: 1 MSSRWNRTIYVGNLPGDIRKCEVEDLFYKYGPIVDIDLKIPPRPPGYAFVEFEDPRDADD 60
Query: 61 AIYYRDGYDFDGFRLRVELAHGGRGSSSSVDRYSSYSGGSSSRGASRRSDYRVLVTGLPP 120
AIY RDGYDFDG RLRVE+AHGGR S SVDRYSS S+SR SRRSDYRVLVTGLPP
Sbjct: 61 AIYGRDGYDFDGCRLRVEIAHGGRRFSPSVDRYSS--SYSASRAPSRRSDYRVLVTGLPP 118
Query: 121 SASWQDLKDHMRKAGDVCFSQVFRERGGMTGIVDYTNYDDMKYALRKLDDSEFRNAFSRA 180
SASWQDLKDHMRKAGDVCFS+VF +R GM+G+VDY+NYDDMKYA+RKLD +EFRNAFS A
Sbjct: 119 SASWQDLKDHMRKAGDVCFSEVFPDRKGMSGVVDYSNYDDMKYAIRKLDATEFRNAFSSA 178
Query: 181 YIRVREYD-RDYSRSPSRDSRRSYSRSISRSP---YLSRSRSRS--RSYSGRSISLSPTA 234
YIRVREY+ R SRSP DS+ SRS SR P Y S+SRS S RS S RS LS
Sbjct: 179 YIRVREYESRSVSRSPD-DSKSYRSRSRSRGPSCSYSSKSRSVSPARSISPRSRPLS--- 234
Query: 235 KRSRRLL-SLSRCGLLRGSGN 254
RSR L S+SR G L +G+
Sbjct: 235 -RSRSLYSSVSRSGSLLRAGD 254
>gb|AAU29329.1| ASF/SF2-like pre-mRNA splicing factor SRP32' [Zea mays]
Length = 257
Score = 337 bits (865), Expect = 1e-91
Identities = 175/242 (72%), Positives = 195/242 (80%), Gaps = 5/242 (2%)
Query: 1 MSSRSSRTIYVGNLPGDIRLREVEDIFYKFGPIVDIDLKIPPRPPGYAFVQFEDARDAED 60
MS R SRTIYVGNLPGDIR REVED+FYK+G IVDIDLK+PPRPPGYAFV+FED RDAE+
Sbjct: 1 MSRRWSRTIYVGNLPGDIREREVEDLFYKYGKIVDIDLKVPPRPPGYAFVEFEDPRDAEE 60
Query: 61 AIYYRDGYDFDGFRLRVELAHGGRGSSSSVDRYSSYSGGSSSR-GASRRSDYRVLVTGLP 119
AI RDGY+FDG RLRVE AHGGRG++SS DR S + GG +R G SR S+YRVLVTGLP
Sbjct: 61 AIAGRDGYNFDGHRLRVEAAHGGRGNASSHDRSSGFGGGGGARRGVSRHSEYRVLVTGLP 120
Query: 120 PSASWQDLKDHMRKAGDVCFSQVFRERGGMTGIVDYTNYDDMKYALRKLDDSEFRNAFSR 179
SASWQDLKDHMRKAGDVCFS+V+RE GG GIVDYTNYDDMKYA++KLDD+EFRNAF R
Sbjct: 121 SSASWQDLKDHMRKAGDVCFSEVYREGGGTVGIVDYTNYDDMKYAIKKLDDTEFRNAFGR 180
Query: 180 AYIRVREYD----RDYSRSPSRDSRRSYSRSISRSPYLSRSRSRSRSYSGRSISLSPTAK 235
AYIRV+EY+ R YSRS S S SRS S+SP RS SRSRS S S S SP+
Sbjct: 181 AYIRVKEYNGKRGRSYSRSRSPSRSYSKSRSPSKSPRTRRSSSRSRSRSVSSRSRSPSKG 240
Query: 236 RS 237
RS
Sbjct: 241 RS 242
>gb|AAU29328.1| ASF/SF2-like pre-mRNA splicing factor SRP32 [Zea mays]
Length = 285
Score = 337 bits (865), Expect = 1e-91
Identities = 175/242 (72%), Positives = 195/242 (80%), Gaps = 5/242 (2%)
Query: 1 MSSRSSRTIYVGNLPGDIRLREVEDIFYKFGPIVDIDLKIPPRPPGYAFVQFEDARDAED 60
MS R SRTIYVGNLPGDIR REVED+FYK+G IVDIDLK+PPRPPGYAFV+FED RDAE+
Sbjct: 1 MSRRWSRTIYVGNLPGDIREREVEDLFYKYGKIVDIDLKVPPRPPGYAFVEFEDPRDAEE 60
Query: 61 AIYYRDGYDFDGFRLRVELAHGGRGSSSSVDRYSSYSGGSSSR-GASRRSDYRVLVTGLP 119
AI RDGY+FDG RLRVE AHGGRG++SS DR S + GG +R G SR S+YRVLVTGLP
Sbjct: 61 AIAGRDGYNFDGHRLRVEAAHGGRGNASSHDRSSGFGGGGGARRGVSRHSEYRVLVTGLP 120
Query: 120 PSASWQDLKDHMRKAGDVCFSQVFRERGGMTGIVDYTNYDDMKYALRKLDDSEFRNAFSR 179
SASWQDLKDHMRKAGDVCFS+V+RE GG GIVDYTNYDDMKYA++KLDD+EFRNAF R
Sbjct: 121 SSASWQDLKDHMRKAGDVCFSEVYREGGGTVGIVDYTNYDDMKYAIKKLDDTEFRNAFGR 180
Query: 180 AYIRVREYD----RDYSRSPSRDSRRSYSRSISRSPYLSRSRSRSRSYSGRSISLSPTAK 235
AYIRV+EY+ R YSRS S S SRS S+SP RS SRSRS S S S SP+
Sbjct: 181 AYIRVKEYNGKRGRSYSRSRSPSRSYSKSRSPSKSPRTRRSSSRSRSRSVSSRSRSPSKG 240
Query: 236 RS 237
RS
Sbjct: 241 RS 242
>emb|CAB42557.1| SF2/ASF-like splicing modulator Srp30 [Arabidopsis thaliana]
gi|23297699|gb|AAN13011.1| putative SF2/ASF splicing
modulator Srp30 [Arabidopsis thaliana]
gi|42561847|ref|NP_172386.3| SF2/ASF-like splicing
modulator (SRP30) [Arabidopsis thaliana]
Length = 268
Score = 337 bits (864), Expect = 2e-91
Identities = 182/253 (71%), Positives = 200/253 (78%), Gaps = 12/253 (4%)
Query: 1 MSSRSSRTIYVGNLPGDIRLREVEDIFYKFGPIVDIDLKIPPRPPGYAFVQFEDARDAED 60
MSSR +RTIYVGNLPGDIR EVED+FYK+GPIVDIDLKIPPRPPGYAFV+FED RDA+D
Sbjct: 1 MSSRWNRTIYVGNLPGDIRKCEVEDLFYKYGPIVDIDLKIPPRPPGYAFVEFEDPRDADD 60
Query: 61 AIYYRDGYDFDGFRLRVELAHGGRGSSSSVDRYSSYSGGSSSRGASRRSDYRVLVTGLPP 120
AIY RDGYDFDG RLRVE+AHGGR S SVDRYSS S+SR SRRSDYRVLVTGLPP
Sbjct: 61 AIYGRDGYDFDGCRLRVEIAHGGRRFSPSVDRYSS--SYSASRAPSRRSDYRVLVTGLPP 118
Query: 121 SASWQDLKDHMRKAGDVCFSQVFRERGGMTGIVDYTNYDDMKYALRKLDDSEFRNAFSRA 180
SASWQDLKDHMRKAGDVCFS+VF +R GM+G+VDY+NYDDMKYA+RKLD +EFRNAFS A
Sbjct: 119 SASWQDLKDHMRKAGDVCFSEVFPDRKGMSGVVDYSNYDDMKYAIRKLDATEFRNAFSSA 178
Query: 181 YIRVREYD-RDYSRSPSRDSRRSYSRSISRSPYLSRSRSRSRSYSGRSISLSPTAKRSRR 239
YIRVREY+ R SRSP DS+ SRS SR P S SYS +S S+SP S R
Sbjct: 179 YIRVREYESRSVSRSPD-DSKSYRSRSRSRGP--------SCSYSSKSRSVSPARSISPR 229
Query: 240 LLSLSRCGLLRGS 252
LSR L S
Sbjct: 230 SRPLSRSRSLYSS 242
>gb|AAF02881.1| alternative splicing factor SF2a [Arabidopsis thaliana]
gi|21554051|gb|AAM63132.1| SF2/ASF-like splicing
modulator Srp30, putative [Arabidopsis thaliana]
gi|26451794|dbj|BAC42991.1| putative ribonucleoprotein
SF-2 [Arabidopsis thaliana] gi|30678398|ref|NP_563665.3|
pre-mRNA splicing factor SF2 (SF2) / SR1 protein
[Arabidopsis thaliana] gi|30678391|ref|NP_850933.1|
pre-mRNA splicing factor SF2 (SF2) / SR1 protein
[Arabidopsis thaliana] gi|3929368|sp|O22315|SFRS1_ARATH
Pre-mRNA splicing factor SF2 (SR1 protein)
gi|2443472|gb|AAB71385.1| ASF/SF2 homolog [Arabidopsis
thaliana]
Length = 303
Score = 332 bits (852), Expect = 5e-90
Identities = 179/250 (71%), Positives = 199/250 (79%), Gaps = 18/250 (7%)
Query: 1 MSSRSSRTIYVGNLPGDIRLREVEDIFYKFGPIVDIDLKIPPRPPGYAFVQFEDARDAED 60
MSSRSSRT+YVGNLPGDIR REVED+F K+GP+V IDLK+PPRPPGYAFV+F+DARDAED
Sbjct: 1 MSSRSSRTVYVGNLPGDIREREVEDLFSKYGPVVQIDLKVPPRPPGYAFVEFDDARDAED 60
Query: 61 AIYYRDGYDFDGFRLRVELAHGGRGSSSSVDRYSSYSGG----------SSSRGASRRSD 110
AI+ RDGYDFDG RLRVELAHGGR SS D S++GG SRG SRRS+
Sbjct: 61 AIHGRDGYDFDGHRLRVELAHGGRRSSD--DTRGSFNGGGRGGGRGRGDGGSRGPSRRSE 118
Query: 111 YRVLVTGLPPSASWQDLKDHMRKAGDVCFSQVFRERGGMTGIVDYTNYDDMKYALRKLDD 170
+RVLVTGLP SASWQDLKDHMRK GDVCFSQV+R+ G TG+VDYT Y+DMKYAL+KLDD
Sbjct: 119 FRVLVTGLPSSASWQDLKDHMRKGGDVCFSQVYRDARGTTGVVDYTCYEDMKYALKKLDD 178
Query: 171 SEFRNAFSRAYIRVREYD-RDYSRSPSRDSRRSYSRSISRSPYLSRSRSRSRSYSGRSIS 229
+EFRNAFS Y+RVREYD R SRSPSR RSYS+S SRS S SRSRSRS RS S
Sbjct: 179 TEFRNAFSNGYVRVREYDSRKDSRSPSRG--RSYSKSRSRSRGRSVSRSRSRS---RSRS 233
Query: 230 LSPTAKRSRR 239
SP AK SRR
Sbjct: 234 RSPKAKSSRR 243
>gb|AAP13424.1| At1g02840 [Arabidopsis thaliana] gi|22135918|gb|AAM91541.1|
SF2/ASF-like splicing modulator Srp30, putative
[Arabidopsis thaliana] gi|30678395|ref|NP_850934.1|
pre-mRNA splicing factor SF2 (SF2) / SR1 protein
[Arabidopsis thaliana]
Length = 285
Score = 332 bits (852), Expect = 5e-90
Identities = 179/250 (71%), Positives = 199/250 (79%), Gaps = 18/250 (7%)
Query: 1 MSSRSSRTIYVGNLPGDIRLREVEDIFYKFGPIVDIDLKIPPRPPGYAFVQFEDARDAED 60
MSSRSSRT+YVGNLPGDIR REVED+F K+GP+V IDLK+PPRPPGYAFV+F+DARDAED
Sbjct: 1 MSSRSSRTVYVGNLPGDIREREVEDLFSKYGPVVQIDLKVPPRPPGYAFVEFDDARDAED 60
Query: 61 AIYYRDGYDFDGFRLRVELAHGGRGSSSSVDRYSSYSGG----------SSSRGASRRSD 110
AI+ RDGYDFDG RLRVELAHGGR SS D S++GG SRG SRRS+
Sbjct: 61 AIHGRDGYDFDGHRLRVELAHGGRRSSD--DTRGSFNGGGRGGGRGRGDGGSRGPSRRSE 118
Query: 111 YRVLVTGLPPSASWQDLKDHMRKAGDVCFSQVFRERGGMTGIVDYTNYDDMKYALRKLDD 170
+RVLVTGLP SASWQDLKDHMRK GDVCFSQV+R+ G TG+VDYT Y+DMKYAL+KLDD
Sbjct: 119 FRVLVTGLPSSASWQDLKDHMRKGGDVCFSQVYRDARGTTGVVDYTCYEDMKYALKKLDD 178
Query: 171 SEFRNAFSRAYIRVREYD-RDYSRSPSRDSRRSYSRSISRSPYLSRSRSRSRSYSGRSIS 229
+EFRNAFS Y+RVREYD R SRSPSR RSYS+S SRS S SRSRSRS RS S
Sbjct: 179 TEFRNAFSNGYVRVREYDSRKDSRSPSRG--RSYSKSRSRSRGRSVSRSRSRS---RSRS 233
Query: 230 LSPTAKRSRR 239
SP AK SRR
Sbjct: 234 RSPKAKSSRR 243
>gb|AAB71386.1| ASF/SF2 homolog [Arabidopsis thaliana]
Length = 272
Score = 332 bits (852), Expect = 5e-90
Identities = 179/250 (71%), Positives = 199/250 (79%), Gaps = 18/250 (7%)
Query: 1 MSSRSSRTIYVGNLPGDIRLREVEDIFYKFGPIVDIDLKIPPRPPGYAFVQFEDARDAED 60
MSSRSSRT+YVGNLPGDIR REVED+F K+GP+V IDLK+PPRPPGYAFV+F+DARDAED
Sbjct: 1 MSSRSSRTVYVGNLPGDIREREVEDLFSKYGPVVQIDLKVPPRPPGYAFVEFDDARDAED 60
Query: 61 AIYYRDGYDFDGFRLRVELAHGGRGSSSSVDRYSSYSGG----------SSSRGASRRSD 110
AI+ RDGYDFDG RLRVELAHGGR SS D S++GG SRG SRRS+
Sbjct: 61 AIHGRDGYDFDGHRLRVELAHGGRRSSD--DTRGSFNGGGRGGGRGRGDGGSRGPSRRSE 118
Query: 111 YRVLVTGLPPSASWQDLKDHMRKAGDVCFSQVFRERGGMTGIVDYTNYDDMKYALRKLDD 170
+RVLVTGLP SASWQDLKDHMRK GDVCFSQV+R+ G TG+VDYT Y+DMKYAL+KLDD
Sbjct: 119 FRVLVTGLPSSASWQDLKDHMRKGGDVCFSQVYRDARGTTGVVDYTCYEDMKYALKKLDD 178
Query: 171 SEFRNAFSRAYIRVREYD-RDYSRSPSRDSRRSYSRSISRSPYLSRSRSRSRSYSGRSIS 229
+EFRNAFS Y+RVREYD R SRSPSR RSYS+S SRS S SRSRSRS RS S
Sbjct: 179 TEFRNAFSNGYVRVREYDSRKDSRSPSRG--RSYSKSRSRSRGRSVSRSRSRS---RSRS 233
Query: 230 LSPTAKRSRR 239
SP AK SRR
Sbjct: 234 RSPKAKSSRR 243
>gb|AAD52613.1| splicing factor SR1E [Arabidopsis thaliana]
Length = 270
Score = 331 bits (848), Expect = 1e-89
Identities = 179/254 (70%), Positives = 199/254 (77%), Gaps = 22/254 (8%)
Query: 1 MSSRSSRTIYVGNLPGDIRLREVEDIFYKFGPIVDIDLKIPPRPPGYAFVQFEDARDAED 60
MSSRSSRT+YVGNLPGDIR REVED+F K+GP+V IDLK+PPRPPGYAFV+F+DARDAED
Sbjct: 1 MSSRSSRTVYVGNLPGDIREREVEDLFSKYGPVVQIDLKVPPRPPGYAFVEFDDARDAED 60
Query: 61 AIYYRDGYDFDGFRLRVELAHGGRGSSSSVDRYSSYSGG--------------SSSRGAS 106
AI+ RDGYDFDG RLRVELAHGGR SS D S++GG SRG S
Sbjct: 61 AIHGRDGYDFDGHRLRVELAHGGRRSSD--DTRGSFNGGGRGGGRGRGDGRGDGGSRGPS 118
Query: 107 RRSDYRVLVTGLPPSASWQDLKDHMRKAGDVCFSQVFRERGGMTGIVDYTNYDDMKYALR 166
RRS++RVLVTGLP SASWQDLKDHMRK GDVCFSQV+R+ G TG+VDYT Y+DMKYAL+
Sbjct: 119 RRSEFRVLVTGLPSSASWQDLKDHMRKGGDVCFSQVYRDARGTTGVVDYTCYEDMKYALK 178
Query: 167 KLDDSEFRNAFSRAYIRVREYD-RDYSRSPSRDSRRSYSRSISRSPYLSRSRSRSRSYSG 225
KLDD+EFRNAFS Y+RVREYD R SRSPSR RSYS+S SRS S SRSRSRS
Sbjct: 179 KLDDTEFRNAFSNGYVRVREYDSRKDSRSPSRG--RSYSKSRSRSRGRSVSRSRSRS--- 233
Query: 226 RSISLSPTAKRSRR 239
RS S SP AK SRR
Sbjct: 234 RSRSRSPKAKSSRR 247
>gb|AAD52611.1| splicing factor SR1C [Arabidopsis thaliana]
Length = 276
Score = 331 bits (848), Expect = 1e-89
Identities = 179/254 (70%), Positives = 199/254 (77%), Gaps = 22/254 (8%)
Query: 1 MSSRSSRTIYVGNLPGDIRLREVEDIFYKFGPIVDIDLKIPPRPPGYAFVQFEDARDAED 60
MSSRSSRT+YVGNLPGDIR REVED+F K+GP+V IDLK+PPRPPGYAFV+F+DARDAED
Sbjct: 1 MSSRSSRTVYVGNLPGDIREREVEDLFSKYGPVVQIDLKVPPRPPGYAFVEFDDARDAED 60
Query: 61 AIYYRDGYDFDGFRLRVELAHGGRGSSSSVDRYSSYSGG--------------SSSRGAS 106
AI+ RDGYDFDG RLRVELAHGGR SS D S++GG SRG S
Sbjct: 61 AIHGRDGYDFDGHRLRVELAHGGRRSSD--DTRGSFNGGGRGGGRGRGDGRGDGGSRGPS 118
Query: 107 RRSDYRVLVTGLPPSASWQDLKDHMRKAGDVCFSQVFRERGGMTGIVDYTNYDDMKYALR 166
RRS++RVLVTGLP SASWQDLKDHMRK GDVCFSQV+R+ G TG+VDYT Y+DMKYAL+
Sbjct: 119 RRSEFRVLVTGLPSSASWQDLKDHMRKGGDVCFSQVYRDARGTTGVVDYTCYEDMKYALK 178
Query: 167 KLDDSEFRNAFSRAYIRVREYD-RDYSRSPSRDSRRSYSRSISRSPYLSRSRSRSRSYSG 225
KLDD+EFRNAFS Y+RVREYD R SRSPSR RSYS+S SRS S SRSRSRS
Sbjct: 179 KLDDTEFRNAFSNGYVRVREYDSRKDSRSPSRG--RSYSKSRSRSRGRSVSRSRSRS--- 233
Query: 226 RSISLSPTAKRSRR 239
RS S SP AK SRR
Sbjct: 234 RSRSRSPKAKSSRR 247
>gb|AAD52610.1| splicing factor SR1B [Arabidopsis thaliana]
Length = 289
Score = 331 bits (848), Expect = 1e-89
Identities = 179/254 (70%), Positives = 199/254 (77%), Gaps = 22/254 (8%)
Query: 1 MSSRSSRTIYVGNLPGDIRLREVEDIFYKFGPIVDIDLKIPPRPPGYAFVQFEDARDAED 60
MSSRSSRT+YVGNLPGDIR REVED+F K+GP+V IDLK+PPRPPGYAFV+F+DARDAED
Sbjct: 1 MSSRSSRTVYVGNLPGDIREREVEDLFSKYGPVVQIDLKVPPRPPGYAFVEFDDARDAED 60
Query: 61 AIYYRDGYDFDGFRLRVELAHGGRGSSSSVDRYSSYSGG--------------SSSRGAS 106
AI+ RDGYDFDG RLRVELAHGGR SS D S++GG SRG S
Sbjct: 61 AIHGRDGYDFDGHRLRVELAHGGRRSSD--DTRGSFNGGGRGGGRGRGDGRGDGGSRGPS 118
Query: 107 RRSDYRVLVTGLPPSASWQDLKDHMRKAGDVCFSQVFRERGGMTGIVDYTNYDDMKYALR 166
RRS++RVLVTGLP SASWQDLKDHMRK GDVCFSQV+R+ G TG+VDYT Y+DMKYAL+
Sbjct: 119 RRSEFRVLVTGLPSSASWQDLKDHMRKGGDVCFSQVYRDARGTTGVVDYTCYEDMKYALK 178
Query: 167 KLDDSEFRNAFSRAYIRVREYD-RDYSRSPSRDSRRSYSRSISRSPYLSRSRSRSRSYSG 225
KLDD+EFRNAFS Y+RVREYD R SRSPSR RSYS+S SRS S SRSRSRS
Sbjct: 179 KLDDTEFRNAFSNGYVRVREYDSRKDSRSPSRG--RSYSKSRSRSRGRSVSRSRSRS--- 233
Query: 226 RSISLSPTAKRSRR 239
RS S SP AK SRR
Sbjct: 234 RSRSRSPKAKSSRR 247
>gb|AAD52609.1| splicing factor SR1 [Arabidopsis thaliana]
Length = 307
Score = 331 bits (848), Expect = 1e-89
Identities = 179/254 (70%), Positives = 199/254 (77%), Gaps = 22/254 (8%)
Query: 1 MSSRSSRTIYVGNLPGDIRLREVEDIFYKFGPIVDIDLKIPPRPPGYAFVQFEDARDAED 60
MSSRSSRT+YVGNLPGDIR REVED+F K+GP+V IDLK+PPRPPGYAFV+F+DARDAED
Sbjct: 1 MSSRSSRTVYVGNLPGDIREREVEDLFSKYGPVVQIDLKVPPRPPGYAFVEFDDARDAED 60
Query: 61 AIYYRDGYDFDGFRLRVELAHGGRGSSSSVDRYSSYSGG--------------SSSRGAS 106
AI+ RDGYDFDG RLRVELAHGGR SS D S++GG SRG S
Sbjct: 61 AIHGRDGYDFDGHRLRVELAHGGRRSSD--DTRGSFNGGGRGGGRGRGDGRGDGGSRGPS 118
Query: 107 RRSDYRVLVTGLPPSASWQDLKDHMRKAGDVCFSQVFRERGGMTGIVDYTNYDDMKYALR 166
RRS++RVLVTGLP SASWQDLKDHMRK GDVCFSQV+R+ G TG+VDYT Y+DMKYAL+
Sbjct: 119 RRSEFRVLVTGLPSSASWQDLKDHMRKGGDVCFSQVYRDARGTTGVVDYTCYEDMKYALK 178
Query: 167 KLDDSEFRNAFSRAYIRVREYD-RDYSRSPSRDSRRSYSRSISRSPYLSRSRSRSRSYSG 225
KLDD+EFRNAFS Y+RVREYD R SRSPSR RSYS+S SRS S SRSRSRS
Sbjct: 179 KLDDTEFRNAFSNGYVRVREYDSRKDSRSPSRG--RSYSKSRSRSRGRSVSRSRSRS--- 233
Query: 226 RSISLSPTAKRSRR 239
RS S SP AK SRR
Sbjct: 234 RSRSRSPKAKSSRR 247
>gb|AAU29331.1| ASF/SF2-like pre-mRNA splicing factor SRP30 [Zea mays]
Length = 260
Score = 331 bits (848), Expect = 1e-89
Identities = 172/240 (71%), Positives = 191/240 (78%), Gaps = 14/240 (5%)
Query: 1 MSSRSSRTIYVGNLPGDIRLREVEDIFYKFGPIVDIDLKIPPRPPGYAFVQFEDARDAED 60
MS R+SRTIYVGNLPGDIR REVED+FYK+G I+DIDLKIPPRPPGYAFV+FED RDA+D
Sbjct: 1 MSRRNSRTIYVGNLPGDIREREVEDLFYKYGRILDIDLKIPPRPPGYAFVEFEDPRDADD 60
Query: 61 AIYYRDGYDFDGFRLRVELAHGGRGSSSSVDRYSSYSGGSSSRGASRRSDYRVLVTGLPP 120
AIY RDGY+FDG+RLRVELAHGGRG S S DR SSYS G SRRSD+RV+VTGLP
Sbjct: 61 AIYGRDGYNFDGYRLRVELAHGGRGQSYSYDRSSSYSSACRG-GVSRRSDFRVMVTGLPS 119
Query: 121 SASWQDLKDHMRKAGDVCFSQVFRERGGMTGIVDYTNYDDMKYALRKLDDSEFRNAFSRA 180
SASWQDLKDHMR+AGDVCFS V+RE G GIVDYTNYDDMKYA+RKLDDS+FRNAFSRA
Sbjct: 120 SASWQDLKDHMRRAGDVCFSDVYREAGETIGIVDYTNYDDMKYAIRKLDDSQFRNAFSRA 179
Query: 181 YIRVREYDRDYSRSPSRDSRRSYSRSISRSPYLSRSRSRSRSYSGRSISLSPTAKRSRRL 240
YIRVREYD +R RS S S SRSP SRSR S +S+S SP++ R L
Sbjct: 180 YIRVREYD-------ARSRSRSRSHSYSRSPSYSRSR------SPKSVSQSPSSVDERSL 226
>gb|AAC24092.1| Contains similarity to pre-mRNA splicing factor (SF2), P33 subunit
gb|M72709 from Homo sapiens. ESTs gb|T42588 and
gb|R65514 come from this gene. [Arabidopsis thaliana]
gi|25386570|pir||E86223 hypothetical protein [imported]
- Arabidopsis thaliana
Length = 237
Score = 331 bits (848), Expect = 1e-89
Identities = 171/224 (76%), Positives = 188/224 (83%), Gaps = 4/224 (1%)
Query: 1 MSSRSSRTIYVGNLPGDIRLREVEDIFYKFGPIVDIDLKIPPRPPGYAFVQFEDARDAED 60
MSSR +RTIYVGNLPGDIR EVED+FYK+GPIVDIDLKIPPRPPGYAFV+FED RDA+D
Sbjct: 1 MSSRWNRTIYVGNLPGDIRKCEVEDLFYKYGPIVDIDLKIPPRPPGYAFVEFEDPRDADD 60
Query: 61 AIYYRDGYDFDGFRLRVELAHGGRGSSSSVDRYSSYSGGSSSRGASRRSDYRVLVTGLPP 120
AIY RDGYDFDG RLRVE+AHGGR S SVDRYSS S+SR SRRSDYRVLVTGLPP
Sbjct: 61 AIYGRDGYDFDGCRLRVEIAHGGRRFSPSVDRYSS--SYSASRAPSRRSDYRVLVTGLPP 118
Query: 121 SASWQDLKDHMRKAGDVCFSQVFRERGGMTGIVDYTNYDDMKYALRKLDDSEFRNAFSRA 180
SASWQDLKDHMRKAGDVCFS+VF +R GM+G+VDY+NYDDMKYA+RKLD +EFRNAFS A
Sbjct: 119 SASWQDLKDHMRKAGDVCFSEVFPDRKGMSGVVDYSNYDDMKYAIRKLDATEFRNAFSSA 178
Query: 181 YIRVREYD-RDYSRSPSRDSRRSYSRSISRSPYLSRSRSRSRSY 223
YIRVREY+ R SRSP DS+ SRS SR P S S RS+
Sbjct: 179 YIRVREYESRSVSRSPD-DSKSYRSRSRSRGPSCSYSSKSRRSF 221
>gb|AAU29332.1| ASF/SF2-like pre-mRNA splicing factor SRP30' [Zea mays]
Length = 241
Score = 330 bits (847), Expect = 2e-89
Identities = 173/247 (70%), Positives = 192/247 (77%), Gaps = 14/247 (5%)
Query: 1 MSSRSSRTIYVGNLPGDIRLREVEDIFYKFGPIVDIDLKIPPRPPGYAFVQFEDARDAED 60
MS R+SRTIYVGNLPGDIR REVED+FYK+G I+DIDLKIPPRPPGYAFV+FED RDA+D
Sbjct: 1 MSRRNSRTIYVGNLPGDIREREVEDLFYKYGRILDIDLKIPPRPPGYAFVEFEDPRDADD 60
Query: 61 AIYYRDGYDFDGFRLRVELAHGGRGSSSSVDRYSSYSGGSSSRGASRRSDYRVLVTGLPP 120
AIY RDGY+FDG+RLRVELAHGGRG S S DR SSYS G SRRSD+RV+VTGLP
Sbjct: 61 AIYGRDGYNFDGYRLRVELAHGGRGQSYSYDRSSSYSSACRG-GVSRRSDFRVMVTGLPS 119
Query: 121 SASWQDLKDHMRKAGDVCFSQVFRERGGMTGIVDYTNYDDMKYALRKLDDSEFRNAFSRA 180
SASWQDLKDHMR+AGDVCFS V+RE G GIVDYTNYDDMKYA+RKLDDS+FRNAFSRA
Sbjct: 120 SASWQDLKDHMRRAGDVCFSDVYREAGETIGIVDYTNYDDMKYAIRKLDDSQFRNAFSRA 179
Query: 181 YIRVREYDRDYSRSPSRDSRRSYSRSISRSPYLSRSRSRSRSYSGRSISLSPTAKRSRRL 240
YIRVREYD +R RS S S SRSP SRSR S +S+S SP++ R
Sbjct: 180 YIRVREYD-------ARSRSRSRSHSYSRSPSYSRSR------SPKSVSQSPSSVDERFA 226
Query: 241 LSLSRCG 247
R G
Sbjct: 227 FVFPRFG 233
>ref|XP_479479.1| putative pre-mRNA splicing factor SF2 [Oryza sativa (japonica
cultivar-group)] gi|33146854|dbj|BAC79849.1| putative
pre-mRNA splicing factor SF2 [Oryza sativa (japonica
cultivar-group)]
Length = 362
Score = 329 bits (843), Expect = 5e-89
Identities = 176/249 (70%), Positives = 195/249 (77%), Gaps = 14/249 (5%)
Query: 1 MSSRSSRTIYVGNLPGDIRLREVEDIFYKFGPIVDIDLKIPPRPPGYAFVQFEDARDAED 60
MS R SRTIYVGNLPGDIR REVED+FYK+G IVDIDLKIPPRPPG+AFV+FED RDAED
Sbjct: 67 MSRRWSRTIYVGNLPGDIREREVEDLFYKYGRIVDIDLKIPPRPPGFAFVEFEDPRDAED 126
Query: 61 AIYYRDGYDFDGFRLRVELAHGGRGSSSSVDRYSSYSGGSSSRGASRRSDYRVLVTGLPP 120
AI RDGY+FDG RLRVELAHGGRG+SSS +++ GG G SR ++YRVLVTGLP
Sbjct: 127 AIRGRDGYNFDGNRLRVELAHGGRGNSSS---FNNSGGGGRRGGVSRHTEYRVLVTGLPS 183
Query: 121 SASWQDLKDHMRKAGDVCFSQVFRERGGMTGIVDYTNYDDMKYALRKLDDSEFRNAFSRA 180
SASWQDLKDHMR AGDVC+S+V+RE GG GIVDYTNYDDMKYA+RKLDDSEF+NAFS+A
Sbjct: 184 SASWQDLKDHMRNAGDVCYSEVYREGGGTIGIVDYTNYDDMKYAIRKLDDSEFKNAFSKA 243
Query: 181 YIRVREYD----RDYSRSPSRDSRRSYSRSIS-------RSPYLSRSRSRSRSYSGRSIS 229
YIRV+EYD R YSRS SR RSYSRS S +S S SRSRSRS S RS S
Sbjct: 244 YIRVKEYDGKRSRSYSRSRSRSRGRSYSRSRSPSKSPKGKSSRRSASRSRSRSASSRSRS 303
Query: 230 LSPTAKRSR 238
S SR
Sbjct: 304 ESKGRSPSR 312
>gb|AAU29334.1| ASF/SF2-like pre-mRNA splicing factor SRP31' [Zea mays]
Length = 253
Score = 327 bits (838), Expect = 2e-88
Identities = 171/242 (70%), Positives = 195/242 (79%), Gaps = 6/242 (2%)
Query: 1 MSSRSSRTIYVGNLPGDIRLREVEDIFYKFGPIVDIDLKIPPRPPGYAFVQFEDARDAED 60
M+ R+ TIYVGNLPGDIR REV+D+FYK+G IV+IDLKIPPRPPG+AFV+FEDARDAED
Sbjct: 1 MTRRNGCTIYVGNLPGDIREREVDDLFYKYGRIVEIDLKIPPRPPGFAFVEFEDARDAED 60
Query: 61 AIYYRDGYDFDGFRLRVELAHGGRGSSSSVDRYSSYSGGSSSRGASRRSDYRVLVTGLPP 120
AIY RDGY+FDG RLRVELAHGGRG+SS DR SSYS + RGAS+RSDYRV+VTGLP
Sbjct: 61 AIYGRDGYNFDGHRLRVELAHGGRGTSS-FDRSSSYSS-AGQRGASKRSDYRVMVTGLPS 118
Query: 121 SASWQDLKDHMRKAGDVCFSQVFRERGGMTGIVDYTNYDDMKYALRKLDDSEFRNAFSRA 180
SASWQDLKDHMR+AGDVCF+ V+RE G GI DYTNY+DMK+A+RKLDDSEFRNAFSR
Sbjct: 119 SASWQDLKDHMRRAGDVCFTDVYREAGATIGIADYTNYEDMKHAIRKLDDSEFRNAFSRT 178
Query: 181 YIRVREYDRDYSRSPSRDSRRSYSRSISRSPYLSRSR----SRSRSYSGRSISLSPTAKR 236
Y+RVREYD SRS SR RS SRS S S SRSR S+SRS RS S S + +
Sbjct: 179 YVRVREYDARRSRSRSRGRNRSKSRSRSHSHSYSRSRSCSYSKSRSPRSRSASESKSPVK 238
Query: 237 SR 238
+R
Sbjct: 239 AR 240
>gb|AAU29333.1| ASF/SF2-like pre-mRNA splicing factor SRP31 [Zea mays]
Length = 276
Score = 327 bits (838), Expect = 2e-88
Identities = 171/242 (70%), Positives = 195/242 (79%), Gaps = 6/242 (2%)
Query: 1 MSSRSSRTIYVGNLPGDIRLREVEDIFYKFGPIVDIDLKIPPRPPGYAFVQFEDARDAED 60
M+ R+ TIYVGNLPGDIR REV+D+FYK+G IV+IDLKIPPRPPG+AFV+FEDARDAED
Sbjct: 1 MTRRNGCTIYVGNLPGDIREREVDDLFYKYGRIVEIDLKIPPRPPGFAFVEFEDARDAED 60
Query: 61 AIYYRDGYDFDGFRLRVELAHGGRGSSSSVDRYSSYSGGSSSRGASRRSDYRVLVTGLPP 120
AIY RDGY+FDG RLRVELAHGGRG+SS DR SSYS + RGAS+RSDYRV+VTGLP
Sbjct: 61 AIYGRDGYNFDGHRLRVELAHGGRGTSS-FDRSSSYSS-AGQRGASKRSDYRVMVTGLPS 118
Query: 121 SASWQDLKDHMRKAGDVCFSQVFRERGGMTGIVDYTNYDDMKYALRKLDDSEFRNAFSRA 180
SASWQDLKDHMR+AGDVCF+ V+RE G GI DYTNY+DMK+A+RKLDDSEFRNAFSR
Sbjct: 119 SASWQDLKDHMRRAGDVCFTDVYREAGATIGIADYTNYEDMKHAIRKLDDSEFRNAFSRT 178
Query: 181 YIRVREYDRDYSRSPSRDSRRSYSRSISRSPYLSRSR----SRSRSYSGRSISLSPTAKR 236
Y+RVREYD SRS SR RS SRS S S SRSR S+SRS RS S S + +
Sbjct: 179 YVRVREYDARRSRSRSRGRNRSKSRSRSHSHSYSRSRSCSYSKSRSPRSRSASESKSPVK 238
Query: 237 SR 238
+R
Sbjct: 239 AR 240
>gb|AAU29336.1| ASF/SF2-like pre-mRNA splicing factor SRP31''' [Zea mays]
Length = 264
Score = 325 bits (833), Expect = 8e-88
Identities = 170/235 (72%), Positives = 191/235 (80%), Gaps = 6/235 (2%)
Query: 1 MSSRSSRTIYVGNLPGDIRLREVEDIFYKFGPIVDIDLKIPPRPPGYAFVQFEDARDAED 60
M+ R+ TIYVGNLPGDIR REV+D+FYK+G IV+IDLKIPPRPPG+AFV+FEDARDAED
Sbjct: 1 MTRRNGCTIYVGNLPGDIREREVDDLFYKYGRIVEIDLKIPPRPPGFAFVEFEDARDAED 60
Query: 61 AIYYRDGYDFDGFRLRVELAHGGRGSSSSVDRYSSYSGGSSSRGASRRSDYRVLVTGLPP 120
AIY RDGY+FDG RLRVELAHGGRG+SS DR SSYS + RGAS+RSDYRV+VTGLP
Sbjct: 61 AIYGRDGYNFDGHRLRVELAHGGRGTSS-FDRSSSYSS-AGQRGASKRSDYRVMVTGLPS 118
Query: 121 SASWQDLKDHMRKAGDVCFSQVFRERGGMTGIVDYTNYDDMKYALRKLDDSEFRNAFSRA 180
SASWQDLKDHMR+AGDVCF+ V+RE G GI DYTNY+DMK+A+RKLDDSEFRNAFSR
Sbjct: 119 SASWQDLKDHMRRAGDVCFTDVYREAGATIGIADYTNYEDMKHAIRKLDDSEFRNAFSRT 178
Query: 181 YIRVREYDRDYSRSPSRDSRRSYSRSISRSPYLSRSR----SRSRSYSGRSISLS 231
Y+RVREYD SRS SR RS SRS S S SRSR S+SRS RS S S
Sbjct: 179 YVRVREYDARRSRSRSRGRNRSKSRSRSHSHSYSRSRSCSYSKSRSPRSRSASES 233
>ref|NP_567235.3| pre-mRNA splicing factor, putative / SR1 protein, putative
[Arabidopsis thaliana]
Length = 278
Score = 323 bits (828), Expect = 3e-87
Identities = 179/261 (68%), Positives = 195/261 (74%), Gaps = 21/261 (8%)
Query: 1 MSSRSSRTIYVGNLPGDIRLREVEDIFYKFGPIVDIDLKIPPRPPGYAFVQFEDARDAED 60
MSSRSSRTIYVGNLPGDIR REVED+F K+GP+V IDLKIPPRPPGYAFV+FEDARDA+D
Sbjct: 1 MSSRSSRTIYVGNLPGDIREREVEDLFSKYGPVVQIDLKIPPRPPGYAFVEFEDARDADD 60
Query: 61 AIYYRDGYDFDGFRLRVELAHGGRGSSSSVDRYSSYS-----------GGSSSRGASRRS 109
AIY RDGYDFDG LRVELAHGGR SS D SYS GG RG SRRS
Sbjct: 61 AIYGRDGYDFDGHHLRVELAHGGRRSSH--DARGSYSGRGRGGRGGGDGGGRERGPSRRS 118
Query: 110 DYRVLVTGLPPSASWQDLKDHMRKAGDVCFSQVFRERGGMTGIVDYTNYDDMKYALRKLD 169
+YRV+V+GLP SASWQDLKDHMRK G+VCFSQVFR+ G TGIVDYT+Y+DMKYA LD
Sbjct: 119 EYRVVVSGLPSSASWQDLKDHMRKGGEVCFSQVFRDGRGTTGIVDYTSYEDMKYA---LD 175
Query: 170 DSEFRNAFSRAYIRVREYD-RDYSRSPSRDSRRSYSRSISRSPYLSRSRSRSRSYS---- 224
D+EFRNAFS Y+RVREYD R SRSPSR S SRS RSP SRSRSRSRS S
Sbjct: 176 DTEFRNAFSHEYVRVREYDSRRDSRSPSRGRSYSKSRSRGRSPSRSRSRSRSRSKSRSPK 235
Query: 225 GRSISLSPTAKRSRRLLSLSR 245
+S+ SP SR S SR
Sbjct: 236 AKSLRRSPAKSTSRSPRSRSR 256
>gb|AAA32856.1| ribonucleoprotein gi|1582992|prf||2119375A Ser/Arg-rich protein
Length = 303
Score = 322 bits (826), Expect = 5e-87
Identities = 175/250 (70%), Positives = 196/250 (78%), Gaps = 18/250 (7%)
Query: 1 MSSRSSRTIYVGNLPGDIRLREVEDIFYKFGPIVDIDLKIPPRPPGYAFVQFEDARDAED 60
MSSRSSRT+YVGNLPGDIR REVED+F K+GP+V IDLK+PPRPPGYAFV+F+DARDAED
Sbjct: 1 MSSRSSRTVYVGNLPGDIREREVEDLFSKYGPVVQIDLKVPPRPPGYAFVEFDDARDAED 60
Query: 61 AIYYRDGYDFDGFRLRVELAHGGRGSSSSVDRYSSYSGG----------SSSRGASRRSD 110
AI+ RDGYDFDG RLRVELAHGGR SS D S++GG SRG SRRS+
Sbjct: 61 AIHGRDGYDFDGHRLRVELAHGGRRSSD--DTRGSFNGGGRGGGRGRGDGGSRGPSRRSE 118
Query: 111 YRVLVTGLPPSASWQDLKDHMRKAGDVCFSQVFRERGGMTGIVDYTNYDDMKYALRKLDD 170
+RVLVT L SASWQDLKDH+ K GDVCFSQV+R+ G TG+VDYT Y+DMKYAL+KLDD
Sbjct: 119 FRVLVTWLASSASWQDLKDHIAKGGDVCFSQVYRDARGTTGVVDYTCYEDMKYALKKLDD 178
Query: 171 SEFRNAFSRAYIRVREYD-RDYSRSPSRDSRRSYSRSISRSPYLSRSRSRSRSYSGRSIS 229
+EFRNAFS Y+RVREYD R SRSPSR RSYS+S SRS S SRSRSRS RS S
Sbjct: 179 TEFRNAFSNGYVRVREYDSRKDSRSPSRG--RSYSKSRSRSRGRSVSRSRSRS---RSRS 233
Query: 230 LSPTAKRSRR 239
SP AK SRR
Sbjct: 234 RSPKAKSSRR 243
Database: nr
Posted date: Jul 5, 2005 12:34 AM
Number of letters in database: 863,360,394
Number of sequences in database: 2,540,612
Lambda K H
0.319 0.136 0.398
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 456,677,182
Number of Sequences: 2540612
Number of extensions: 19994676
Number of successful extensions: 103407
Number of sequences better than 10.0: 4408
Number of HSP's better than 10.0 without gapping: 1354
Number of HSP's successfully gapped in prelim test: 3102
Number of HSP's that attempted gapping in prelim test: 74446
Number of HSP's gapped (non-prelim): 15473
length of query: 259
length of database: 863,360,394
effective HSP length: 125
effective length of query: 134
effective length of database: 545,783,894
effective search space: 73135041796
effective search space used: 73135041796
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 74 (33.1 bits)
Lotus: description of TM0299.13