BLAST2 result
BLASTP 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TM0290.16
(172 letters)
Database: nr
2,540,612 sequences; 863,360,394 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
emb|CAA73798.1| reverse transcriptase [Beta vulgaris subsp. vulg... 103 1e-21
gb|AAX92720.1| retrotransposon protein, putative, unclassified [... 76 3e-13
gb|AAP44582.1| putative reverse transcriptase [Oryza sativa (jap... 74 2e-12
gb|AAV44086.1| hypothetical protein [Oryza sativa (japonica cult... 73 4e-12
gb|AAD37019.2| putative non-LTR retrolelement reverse transcript... 71 1e-11
pir||E84487 hypothetical protein At2g07670 [imported] - Arabidop... 71 1e-11
ref|XP_472382.1| OSJNBb0118P14.10 [Oryza sativa (japonica cultiv... 70 2e-11
gb|AAM94293.1| putative reverse transcriptase [Sorghum bicolor] 70 2e-11
gb|AAX96121.1| retrotransposon protein, putative, unclassified [... 67 2e-10
gb|AAD21699.1| Contains reverse transcriptase domain (rvt) PF|00... 66 3e-10
dbj|BAB01845.1| non-LTR retroelement reverse transcriptase-like ... 65 1e-09
emb|CAA66812.1| non-ltr retrotransposon reverse transcriptase-li... 65 1e-09
gb|AAP44701.1| putative reverse transcriptase [Oryza sativa (jap... 64 1e-09
gb|AAM82604.1| putative AP endonuclease/reverse transcriptase [B... 64 1e-09
ref|XP_463102.1| putative reverse transcriptase [Oryza sativa (j... 64 2e-09
gb|AAC28221.1| similar to reverse transcriptases (PFam: rvt.hmm,... 64 2e-09
emb|CAE01924.2| OSJNBb0078D11.8 [Oryza sativa (japonica cultivar... 63 3e-09
gb|AAX95233.1| retrotransposon protein, putative, unclassified [... 62 5e-09
gb|AAX95130.1| retrotransposon protein, putative, unclassified [... 62 5e-09
dbj|BAA97290.1| non-LTR retroelement reverse transcriptase-like ... 62 6e-09
>emb|CAA73798.1| reverse transcriptase [Beta vulgaris subsp. vulgaris]
gi|7484649|pir||T14619 reverse transcriptase - beet
retrotransposon (fragment)
Length = 507
Score = 103 bits (258), Expect = 1e-21
Identities = 59/171 (34%), Positives = 90/171 (52%), Gaps = 7/171 (4%)
Query: 2 FTWHRPNNQAQSRLDRVLVSNEWGTFWPNCSQLVLNRDVSDHCPVLLRQTFQDWGPKPFR 61
FTW R Q++S+LDR+ V EW T +P+ +L R SDHCP+L + Q+WGPKPFR
Sbjct: 53 FTWFR--GQSKSKLDRLFVQPEWLTSFPSLKLNILKRSPSDHCPLLAFSSHQNWGPKPFR 110
Query: 62 VLNCWLGDHRLPALVENSWKDMKVKGWGAFMVKEKLKGLRSVLKEWNREVFGDLRSRREV 121
LNCWL + ++ W K + V +KL+ L+ LK+WN++ FG + +
Sbjct: 111 FLNCWLTHPQCMKIISEIW----TKNHNS-SVPDKLRTLKEALKQWNQKEFGIIDDNIKH 165
Query: 122 VVTQINNLDLKEEEVGLDQAEVDLRKALFNDFWAILRLHESFLCQKARSKW 172
+I+ LD L E+ R + W L+ ES+ +R++W
Sbjct: 166 CEEKIHFLDNIANSRLLCTNELQERDDAQLNLWTWLKRSESYWALNSRARW 216
>gb|AAX92720.1| retrotransposon protein, putative, unclassified [Oryza sativa
(japonica cultivar-group)] gi|62701880|gb|AAX92953.1|
retrotransposon protein, putative, unclassified [Oryza
sativa (japonica cultivar-group)]
Length = 838
Score = 76.3 bits (186), Expect = 3e-13
Identities = 48/172 (27%), Positives = 81/172 (46%), Gaps = 2/172 (1%)
Query: 1 KFTW-HRPNNQAQSRLDRVLVSNEWGTFWPNCSQLVLNRDVSDHCPVLLRQTFQDWGPKP 59
KFTW + N +LDR+ V+ +W +P L R +SDH P+L+ K
Sbjct: 172 KFTWCNNQENPTLEKLDRIFVNTDWEKEYPLTMAKTLTRSISDHNPLLIDTGVLKITHKS 231
Query: 60 FRVLNCWLGDHRLPALVENSWKDMKVKGWGAFMVKEKLKGLRSVLKEWNREVFGDLRSRR 119
F+ W L +VE+ WK + G +++ + LR L WN+ G R +
Sbjct: 232 FKFELSWFLREDLKEIVESVWK-INYYGSSIERWQKRFRALRKKLNGWNKNWEGRYRREK 290
Query: 120 EVVVTQINNLDLKEEEVGLDQAEVDLRKALFNDFWAILRLHESFLCQKARSK 171
E ++ +I NLD K E G+ + + + RK L + ++R + Q+++ K
Sbjct: 291 ESILEKIENLDAKVERCGMSREDREERKELEDKLNFVIREEKIKWFQRSKEK 342
>gb|AAP44582.1| putative reverse transcriptase [Oryza sativa (japonica
cultivar-group)] gi|34896522|ref|NP_909605.1| putative
reverse transcriptase [Oryza sativa (japonica
cultivar-group)]
Length = 1556
Score = 73.6 bits (179), Expect = 2e-12
Identities = 46/172 (26%), Positives = 88/172 (50%), Gaps = 2/172 (1%)
Query: 2 FTW-HRPNNQAQSRLDRVLVSNEWGTFWPNCSQLVLNRDVSDHCPVLLRQTFQDWGPKP- 59
FTW + NQ +LDR+LVS E+ T +P + +L R++SDH P+L +P
Sbjct: 963 FTWANHLQNQTFEKLDRILVSTEFETKFPLSTVSILTREISDHTPLLYNSGGASAAYQPQ 1022
Query: 60 FRVLNCWLGDHRLPALVENSWKDMKVKGWGAFMVKEKLKGLRSVLKEWNREVFGDLRSRR 119
F+ WL +V+ W+ + ++G + K++ LR L+ W + + G + +
Sbjct: 1023 FKFELGWLRRDGFSDIVKEVWQGVSIEGTPLERWQRKIRRLRQFLRGWAKNITGAYKKEK 1082
Query: 120 EVVVTQINNLDLKEEEVGLDQAEVDLRKALFNDFWAILRLHESFLCQKARSK 171
+ ++ +++ L K E L++ E++++ L + +LR E Q+A+ K
Sbjct: 1083 KELLDKLDTLVKKAEHTILNEFELNVKHVLNDRLAELLREEEIKWYQRAKVK 1134
>gb|AAV44086.1| hypothetical protein [Oryza sativa (japonica cultivar-group)]
Length = 1237
Score = 72.8 bits (177), Expect = 4e-12
Identities = 51/173 (29%), Positives = 81/173 (46%), Gaps = 3/173 (1%)
Query: 2 FTW-HRPNNQAQSRLDRVLVSNEWGTFWPNCSQLVLNRDVSDHCPVLLRQTFQDW--GPK 58
FTW + N +LDRVL+S EW +P S + LNRD+SDH P+ L
Sbjct: 823 FTWANNLANPTYEKLDRVLMSTEWEQKFPLSSVVALNRDISDHTPLPLNTNSSSLSNAQH 882
Query: 59 PFRVLNCWLGDHRLPALVENSWKDMKVKGWGAFMVKEKLKGLRSVLKEWNREVFGDLRSR 118
F+ WL +V+ W + + K++ LR L+ W++ G +
Sbjct: 883 SFKFELGWLLRDGFVEMVKEIWSSVDEGNTAMERWQAKIRRLRQHLRGWSKHSSGLYKKE 942
Query: 119 REVVVTQINNLDLKEEEVGLDQAEVDLRKALFNDFWAILRLHESFLCQKARSK 171
++ ++ +++ LD K E L E+D+R N +ILR E Q+A+SK
Sbjct: 943 KKKILDKLDLLDKKAENSLLSPEELDIRWFCRNRLSSILREEEIKWYQRAKSK 995
>gb|AAD37019.2| putative non-LTR retrolelement reverse transcriptase [Arabidopsis
thaliana]
Length = 855
Score = 70.9 bits (172), Expect = 1e-11
Identities = 57/180 (31%), Positives = 84/180 (46%), Gaps = 18/180 (10%)
Query: 1 KFTWHRPNNQAQ---SRLDRVLVSNEWGTFWPNCSQLVLNRDVSDHCPVLLR---QTFQD 54
KFTW R ++ RLDRVL + W S L SDH P+ ++ + +
Sbjct: 592 KFTWKRGRVESTFVAKRLDRVLCRPQTRLKWQEASVTHLPFFASDHAPIYIQLEPEVRSN 651
Query: 55 WGPKPFRVLNCWLGDHRLPALVENSWKDMKVKGWGAFMVKEKLKGLRSVLKEWNREVFGD 114
+PFR WL L++ SW G V L L+S LK+WNREVFGD
Sbjct: 652 PLRRPFRFEAAWLTHSGFKDLLQASWNTE-----GETPVA--LAALKSKLKKWNREVFGD 704
Query: 115 LRSRREVVVTQINNLDLKEEEVGLDQAEVDLRK--ALFNDFWAILRLHESFLCQKARSKW 172
+ R+E + +N + + +E + ++Q + L K L +F +L E QK+R KW
Sbjct: 705 VNRRKE---SLMNEIKVVQELLEINQTDNLLSKEEELIKEFDVVLEQEEVLWFQKSREKW 761
>pir||E84487 hypothetical protein At2g07670 [imported] - Arabidopsis thaliana
Length = 913
Score = 70.9 bits (172), Expect = 1e-11
Identities = 57/180 (31%), Positives = 84/180 (46%), Gaps = 18/180 (10%)
Query: 1 KFTWHRPNNQAQ---SRLDRVLVSNEWGTFWPNCSQLVLNRDVSDHCPVLLR---QTFQD 54
KFTW R ++ RLDRVL + W S L SDH P+ ++ + +
Sbjct: 650 KFTWKRGRVESTFVAKRLDRVLCRPQTRLKWQEASVTHLPFFASDHAPIYIQLEPEVRSN 709
Query: 55 WGPKPFRVLNCWLGDHRLPALVENSWKDMKVKGWGAFMVKEKLKGLRSVLKEWNREVFGD 114
+PFR WL L++ SW G V L L+S LK+WNREVFGD
Sbjct: 710 PLRRPFRFEAAWLTHSGFKDLLQASWNTE-----GETPVA--LAALKSKLKKWNREVFGD 762
Query: 115 LRSRREVVVTQINNLDLKEEEVGLDQAEVDLRK--ALFNDFWAILRLHESFLCQKARSKW 172
+ R+E + +N + + +E + ++Q + L K L +F +L E QK+R KW
Sbjct: 763 VNRRKE---SLMNEIKVVQELLEINQTDNLLSKEEELIKEFDVVLEQEEVLWFQKSREKW 819
>ref|XP_472382.1| OSJNBb0118P14.10 [Oryza sativa (japonica cultivar-group)]
gi|38569170|emb|CAE05360.3| OJ000315_02.5 [Oryza sativa
(japonica cultivar-group)] gi|38346150|emb|CAD40674.2|
OSJNBb0118P14.10 [Oryza sativa (japonica
cultivar-group)]
Length = 934
Score = 70.1 bits (170), Expect = 2e-11
Identities = 39/139 (28%), Positives = 67/139 (48%), Gaps = 1/139 (0%)
Query: 1 KFTW-HRPNNQAQSRLDRVLVSNEWGTFWPNCSQLVLNRDVSDHCPVLLRQTFQDWGPKP 59
KFTW + + +LDR+L +++W +P VL R SDH P+L+ + W
Sbjct: 636 KFTWANNKQSVTLEKLDRILFNDKWEIKFPLACGRVLERIYSDHTPLLINVEGEKWLSPL 695
Query: 60 FRVLNCWLGDHRLPALVENSWKDMKVKGWGAFMVKEKLKGLRSVLKEWNREVFGDLRSRR 119
F+ N WL + +VE W + G + +L+ +R LK WN G + ++
Sbjct: 696 FKFENSWLMREDINTVVEQVWNSCNINGSSIDKWQWRLQKMRKKLKGWNMNWEGMYKRKK 755
Query: 120 EVVVTQINNLDLKEEEVGL 138
++ +I ++D K E G+
Sbjct: 756 HEIMEKIEDIDKKCEAYGM 774
>gb|AAM94293.1| putative reverse transcriptase [Sorghum bicolor]
Length = 1323
Score = 70.1 bits (170), Expect = 2e-11
Identities = 41/151 (27%), Positives = 73/151 (48%), Gaps = 3/151 (1%)
Query: 1 KFTWHRPN-NQAQSRLDRVLVSNEWGTFWPNCSQLVLNRDVSDHCPVLLRQTFQDWGPKP 59
K+TW N LDR + +W +P+ + + L+ +SDHCP+ L Q
Sbjct: 378 KYTWSNGRKNPTLVHLDRAFCNLDWDEIFPSATLIALSSSLSDHCPLFLCNQQQPHRRAT 437
Query: 60 FRVLNCWLGDHRLPALVENSWKDMKVKGWGAF-MVKEKLKGLRSVLKEWNREVFGDLRSR 118
F+ + W+ +V+ +W + V+G ++ +L+ LK+W++ +F + R +
Sbjct: 438 FKFESFWVRVPGFLQIVQTAWA-LPVRGSNPLTLLHNRLRNAAEALKKWSKSLFSEARLQ 496
Query: 119 REVVVTQINNLDLKEEEVGLDQAEVDLRKAL 149
E+ I LD+ +E L AEVDL + L
Sbjct: 497 LELANEVILRLDIAQESRPLSDAEVDLHRQL 527
>gb|AAX96121.1| retrotransposon protein, putative, unclassified [Oryza sativa
(japonica cultivar-group)]
Length = 1556
Score = 67.4 bits (163), Expect = 2e-10
Identities = 55/179 (30%), Positives = 88/179 (48%), Gaps = 13/179 (7%)
Query: 1 KFTW-HRPNNQAQSRLDRVLVSNEWGTFWPNCSQLVLNRDVSDHCPVLL---RQTFQDWG 56
KFTW + N +LDRVLVS EW T P + L RD+SDH P++L + T ++
Sbjct: 907 KFTWANSMPNPTYEKLDRVLVSTEWETKNPLVTVHALCRDLSDHTPLVLDTGKGTHRNAQ 966
Query: 57 PKPFRVLNCWLGDHRLPALVENSWKDMK----VKGWGAFMVKEKLKGLRSVLKEWNREVF 112
P L L D LVE KD++ ++ W + K++ LR L+ W + +
Sbjct: 967 PLFKFELGWLLRDDFQNLLVEIWSKDIQGATNIERW-----QNKIRRLRQFLRGWVKNLS 1021
Query: 113 GDLRSRREVVVTQINNLDLKEEEVGLDQAEVDLRKALFNDFWAILRLHESFLCQKARSK 171
G + + ++ +++ LD E L E+DL+ + N +LR E Q+A++K
Sbjct: 1022 GAYKKEKPRLIAKVDELDKLAETRILTSQELDLKNSCKNALAQLLREEEVKWYQRAKTK 1080
>gb|AAD21699.1| Contains reverse transcriptase domain (rvt) PF|00078. [Arabidopsis
thaliana] gi|25518658|pir||F86436 hypothetical protein
F28K20.4 - Arabidopsis thaliana
Length = 1253
Score = 66.2 bits (160), Expect = 3e-10
Identities = 48/178 (26%), Positives = 81/178 (44%), Gaps = 12/178 (6%)
Query: 2 FTWHRPN--NQAQSRLDRVLVSNEWGTFWPNCSQLVLNRDVSDH--CPVLLRQTFQDWGP 57
FTW + +LDR+LV+ W + +P+ + D SDH C V++
Sbjct: 137 FTWWNKSATRPVAKKLDRILVNESWCSRFPSAYAVFGEPDFSDHASCGVIINPLMHR-EK 195
Query: 58 KPFRVLNCWLGDHRLPALVENSWKDMKVKGWGAFMVKEKLKGLRSVLKEWNREVFGDLRS 117
+PFR N L + +LV W + V G F + +KLK L++ ++ ++ E F +L
Sbjct: 196 RPFRFYNFLLQNPDFISLVGELWYSINVVGSSMFKMSKKLKALKNPIRTFSMENFSNLEK 255
Query: 118 RREVVVTQINNLDLKEEEVGLDQAEVD---LRKALFNDFWAILRLHESFLCQKARSKW 172
R V + +NL L + L + L + +++ ESF CQ++R W
Sbjct: 256 R----VKEAHNLVLYRQNKTLSDPTIPNAALEMEAQRKWLILVKAEESFFCQRSRVTW 309
>dbj|BAB01845.1| non-LTR retroelement reverse transcriptase-like protein
[Arabidopsis thaliana]
Length = 893
Score = 64.7 bits (156), Expect = 1e-09
Identities = 46/178 (25%), Positives = 79/178 (43%), Gaps = 12/178 (6%)
Query: 2 FTWHRP--NNQAQSRLDRVLVSNEWGTFWPNCSQLVLNRDVSDH--CPVLLRQTFQDWGP 57
+TW + ++DR+LV++ W T +P+ D SDH C V+L
Sbjct: 185 YTWWNKCSSRPLAKKIDRILVNDHWNTLFPSAYANFGEPDFSDHSSCEVVLDPAVLK-AK 243
Query: 58 KPFRVLNCWLGDHRLPALVENSWKDMKVKGWGAFMVKEKLKGLRSVLKEWNREVFGDLRS 117
+PFR N +L + L+ +W V G + V +KLK L+ + ++RE + D+
Sbjct: 244 RPFRFFNYFLHNPDFLQLIRENWYSCNVSGSAMYRVSKKLKHLKLPICCFSRENYSDIEK 303
Query: 118 RREVVVTQINNLDLKEEEVGLDQAEV---DLRKALFNDFWAILRLHESFLCQKARSKW 172
R V++ + + L + + L V L + + + ESF CQK+ W
Sbjct: 304 R----VSEAHAIVLHRQRITLTNPSVVHATLELEATRKWQILAKAEESFFCQKSSISW 357
>emb|CAA66812.1| non-ltr retrotransposon reverse transcriptase-like protein
[Arabidopsis thaliana]
Length = 893
Score = 64.7 bits (156), Expect = 1e-09
Identities = 46/178 (25%), Positives = 79/178 (43%), Gaps = 12/178 (6%)
Query: 2 FTWHRP--NNQAQSRLDRVLVSNEWGTFWPNCSQLVLNRDVSDH--CPVLLRQTFQDWGP 57
+TW + ++DR+LV++ W T +P+ D SDH C V+L
Sbjct: 185 YTWWNKCSSRPLAKKIDRILVNDHWNTLFPSAYANFGEPDFSDHSSCEVVLDPAVLK-AK 243
Query: 58 KPFRVLNCWLGDHRLPALVENSWKDMKVKGWGAFMVKEKLKGLRSVLKEWNREVFGDLRS 117
+PFR N +L + L+ +W V G + V +KLK L+ + ++RE + D+
Sbjct: 244 RPFRFFNYFLHNPDFLQLIRENWYSCNVSGSAMYRVSKKLKHLKLPICCFSRENYSDIEK 303
Query: 118 RREVVVTQINNLDLKEEEVGLDQAEV---DLRKALFNDFWAILRLHESFLCQKARSKW 172
R V++ + + L + + L V L + + + ESF CQK+ W
Sbjct: 304 R----VSEAHAIVLHRQRITLTNPSVVHATLELEATRKWQILAKAEESFFCQKSSISW 357
>gb|AAP44701.1| putative reverse transcriptase [Oryza sativa (japonica
cultivar-group)] gi|50918535|ref|XP_469664.1| putative
reverse transcriptase [Oryza sativa (japonica
cultivar-group)] gi|40539049|gb|AAR87306.1| putative
reverse transcriptase [Oryza sativa (japonica
cultivar-group)]
Length = 1014
Score = 64.3 bits (155), Expect = 1e-09
Identities = 43/173 (24%), Positives = 70/173 (39%), Gaps = 1/173 (0%)
Query: 1 KFTWHRPNNQAQ-SRLDRVLVSNEWGTFWPNCSQLVLNRDVSDHCPVLLRQTFQDWGPKP 59
+FTW + +LDR+ + + + N + L+ SDHCP+LL T Q
Sbjct: 119 RFTWSNERDAPTLEKLDRIFCNPDGDMLFSNHNLQALSSSNSDHCPLLLSPTHQLLRKPT 178
Query: 60 FRVLNCWLGDHRLPALVENSWKDMKVKGWGAFMVKEKLKGLRSVLKEWNREVFGDLRSRR 119
FR N W V+ +W + KLK L+ W+ + D R +
Sbjct: 179 FRFENFWPRPPGFLDTVQTAWSQPVSASHPVKRLSSKLKATAKALRSWSNRILSDSRIQF 238
Query: 120 EVVVTQINNLDLKEEEVGLDQAEVDLRKALFNDFWAILRLHESFLCQKARSKW 172
+V I LD+ +E L E+ LRK L + + ++ Q++ W
Sbjct: 239 HLVNELILRLDIAQENRALSPLEISLRKDLKLQILGLAAVEKARRRQRSTLTW 291
>gb|AAM82604.1| putative AP endonuclease/reverse transcriptase [Brassica napus]
Length = 1214
Score = 64.3 bits (155), Expect = 1e-09
Identities = 46/176 (26%), Positives = 77/176 (43%), Gaps = 8/176 (4%)
Query: 2 FTW--HRPNNQAQSRLDRVLVSNEWGTFWPNCSQLVLNRDVSDHCPVLLRQTFQDWGP-K 58
+TW ++ NN ++DR+LV++ W P + SDHCP + + Q G K
Sbjct: 186 YTWWNNQENNPIAKKIDRILVNDSWLIASPLSYGSFCAMEFSDHCPSCVNISNQSGGRNK 245
Query: 59 PFRVLNCWLGDHRLPALVENSWKDMKVKGWGAFMVKEKLKGLRSVLKEWNREVFGDLRSR 118
PF++ N + + +W + +G F + +K K L+ ++ +NRE + L R
Sbjct: 246 PFKLSNFLMHHPEFIEKIRVTWDRLAYQGSAMFTLSKKSKFLKGTIRTFNREHYSGLEKR 305
Query: 119 REVVVTQINNLDLKEEEVGLDQAE--VDLRKALFNDFWAILRLHESFLCQKARSKW 172
VV NL + + + L K + + E FLCQK+R W
Sbjct: 306 ---VVQAAQNLKTCQNNLLAAPSSYLAGLEKEAHRSWAELALAEERFLCQKSRVLW 358
>ref|XP_463102.1| putative reverse transcriptase [Oryza sativa (japonica
cultivar-group)] gi|28875978|gb|AAO59987.1| putative
reverse transcriptase [Oryza sativa (japonica
cultivar-group)] gi|28269466|gb|AAO38009.1| putative
reverse transcriptase [Oryza sativa (japonica
cultivar-group)]
Length = 1349
Score = 63.9 bits (154), Expect = 2e-09
Identities = 47/174 (27%), Positives = 76/174 (43%), Gaps = 3/174 (1%)
Query: 1 KFTWHRPN-NQAQSRLDRVLVSNEWGTFWPNCSQLVLNRDVSDHCPVLLRQTFQDWGPKP 59
+FTW + N Q+++DR +W + + L+ SDH P+ L Q
Sbjct: 511 RFTWAKDGANPTQTKIDRAFCKPDWDILFGSAYMAALSSSSSDHAPLFLVGCEQRELNTS 570
Query: 60 FRVLNCWLGDHRLPALVENSWKDMKVKGWGAFM-VKEKLKGLRSVLKEWNREVFGDLRSR 118
FR WL + SW + ++G F + KLK L LK W++ GD+R +
Sbjct: 571 FRFEAYWLKFPEFLEVASESW-NRPIRGSNPFAKLNLKLKRLARDLKRWSKFRIGDIRLQ 629
Query: 119 REVVVTQINNLDLKEEEVGLDQAEVDLRKALFNDFWAILRLHESFLCQKARSKW 172
+ I LD+ +EE L E+ L+ L + + L + + Q+AR W
Sbjct: 630 HAIANEVIFQLDVAQEERALTDEELLLKSTLKSRVLGLATLVKIRIRQRARLTW 683
>gb|AAC28221.1| similar to reverse transcriptases (PFam: rvt.hmm, score: 60.13)
[Arabidopsis thaliana] gi|7488321|pir||T01871
RNA-directed DNA polymerase homolog T24M8.8 -
Arabidopsis thaliana
Length = 1164
Score = 63.5 bits (153), Expect = 2e-09
Identities = 39/121 (32%), Positives = 61/121 (50%), Gaps = 5/121 (4%)
Query: 2 FTWHRPNNQAQ--SRLDRVLVSNEWGTFWPNCSQLVLNRDVSDH--CPVLLRQTFQDWGP 57
FTW ++A +LDR+LV+++W T +P+ L D SDH C + L
Sbjct: 85 FTWWNKRSRAPVAKKLDRILVNDKWTTTFPSSLGLFGEPDFSDHSSCELSLMSA-SPRSK 143
Query: 58 KPFRVLNCWLGDHRLPALVENSWKDMKVKGWGAFMVKEKLKGLRSVLKEWNREVFGDLRS 117
KPFR N L D +L+ W V G + V KLK L+ V+++++R+ + D+
Sbjct: 144 KPFRFNNFLLKDENFLSLICLKWFSTSVTGSAMYRVSVKLKALKKVIRDFSRDNYSDIEK 203
Query: 118 R 118
R
Sbjct: 204 R 204
>emb|CAE01924.2| OSJNBb0078D11.8 [Oryza sativa (japonica cultivar-group)]
gi|50927957|ref|XP_473506.1| OSJNBb0078D11.8 [Oryza
sativa (japonica cultivar-group)]
Length = 1636
Score = 63.2 bits (152), Expect = 3e-09
Identities = 47/173 (27%), Positives = 72/173 (41%), Gaps = 1/173 (0%)
Query: 1 KFTWH-RPNNQAQSRLDRVLVSNEWGTFWPNCSQLVLNRDVSDHCPVLLRQTFQDWGPKP 59
+FTW + +++D+VLV+ EW F+ + L+ SDHCP+LL P+
Sbjct: 1020 RFTWSSEQESPTLTKIDKVLVNAEWEDFFRDAHLQALSSSASDHCPLLLACDAMVHRPRR 1079
Query: 60 FRVLNCWLGDHRLPALVENSWKDMKVKGWGAFMVKEKLKGLRSVLKEWNREVFGDLRSRR 119
F+ WL +V +W+ + KLK + LK W +LR +
Sbjct: 1080 FKFEAFWLHLDGFDEIVRAAWESAPAGSNAFSSLHFKLKATATALKPWGAHRICELRLQL 1139
Query: 120 EVVVTQINNLDLKEEEVGLDQAEVDLRKALFNDFWAILRLHESFLCQKARSKW 172
V I LD + L E LR L A+ L L Q+AR ++
Sbjct: 1140 AVAHEVILQLDRAMDSRQLSPEERSLRAILKGRCLALASLERIRLRQRARLRY 1192
>gb|AAX95233.1| retrotransposon protein, putative, unclassified [Oryza sativa
(japonica cultivar-group)]
Length = 1018
Score = 62.4 bits (150), Expect = 5e-09
Identities = 46/173 (26%), Positives = 79/173 (45%), Gaps = 1/173 (0%)
Query: 1 KFTWHRPN-NQAQSRLDRVLVSNEWGTFWPNCSQLVLNRDVSDHCPVLLRQTFQDWGPKP 59
+FTW N Q+++DR V+ +W + + + +L+ SDH P+ L Q
Sbjct: 174 RFTWAGEGANPTQTKIDRSFVTTDWDLMFESSNLYLLSSACSDHAPLFLVGNEQRSKFPS 233
Query: 60 FRVLNCWLGDHRLPALVENSWKDMKVKGWGAFMVKEKLKGLRSVLKEWNREVFGDLRSRR 119
FR + WL V++SW+ + + + KL+ L LK W+R GD++ +
Sbjct: 234 FRFESFWLKIPGFLEAVQDSWQRPILATNCLAIFRIKLRCLARDLKRWSRSQVGDIKLQL 293
Query: 120 EVVVTQINNLDLKEEEVGLDQAEVDLRKALFNDFWAILRLHESFLCQKARSKW 172
V + LD+ +E L E L L N A+ L++ + Q++R W
Sbjct: 294 AVASKVVFQLDIAQETRTLSDDERLLVSNLKNRILALSVLNKIQIRQRSRQTW 346
>gb|AAX95130.1| retrotransposon protein, putative, unclassified [Oryza sativa
(japonica cultivar-group)]
Length = 930
Score = 62.4 bits (150), Expect = 5e-09
Identities = 46/173 (26%), Positives = 79/173 (45%), Gaps = 1/173 (0%)
Query: 1 KFTWHRPN-NQAQSRLDRVLVSNEWGTFWPNCSQLVLNRDVSDHCPVLLRQTFQDWGPKP 59
+FTW N Q+++DR V+ +W + + + +L+ SDH P+ L Q
Sbjct: 86 RFTWAGEGANPTQTKIDRSFVTTDWDLMFESSNLYLLSSACSDHAPLFLVGNEQRSKFPS 145
Query: 60 FRVLNCWLGDHRLPALVENSWKDMKVKGWGAFMVKEKLKGLRSVLKEWNREVFGDLRSRR 119
FR + WL V++SW+ + + + KL+ L LK W+R GD++ +
Sbjct: 146 FRFESFWLKIPGFLEAVQDSWQRPILATNCLAIFRIKLRCLARDLKRWSRSQVGDIKLQL 205
Query: 120 EVVVTQINNLDLKEEEVGLDQAEVDLRKALFNDFWAILRLHESFLCQKARSKW 172
V + LD+ +E L E L L N A+ L++ + Q++R W
Sbjct: 206 AVASKVVFQLDIAQETRTLSDDERLLVSNLKNRILALSVLNKIQIRQRSRQTW 258
>dbj|BAA97290.1| non-LTR retroelement reverse transcriptase-like [Arabidopsis
thaliana]
Length = 1072
Score = 62.0 bits (149), Expect = 6e-09
Identities = 48/180 (26%), Positives = 83/180 (45%), Gaps = 16/180 (8%)
Query: 2 FTWHRPNN--QAQSRLDRVLVSNEWGTFWPNCSQLVLNRDVSDH--CPVLLRQTFQDWGP 57
FTW ++ +LDR+L ++ W +P+ L N D SDH C V+L
Sbjct: 48 FTWWNKSSIRPIAKKLDRILANDSWCNLYPSSHGLFGNLDFSDHVSCGVVLEANGIS-AK 106
Query: 58 KPFRVLNCWLGDHRLPALVENSWKDMKVKGWGAFMVKEKLKGLRSVLKEWNREVFGDLRS 117
+PF+ N L + +V ++W V G + V +KLK ++ +K+++R + +
Sbjct: 107 RPFKFFNFLLKNEDFLNVVMDNWFSTNVVGSSMYRVSKKLKAMKKPIKDFSRLNYSGIEL 166
Query: 118 R----REVVVTQINNLDLKEEEVGLDQAEVDLRKALFNDFWAILR-LHESFLCQKARSKW 172
R E+++T NL L V E++ ++ W +L ESF Q++R W
Sbjct: 167 RTKEAHELLIT-CQNLTLANPSVSNAALELEAQRK-----WVLLSCAEESFFHQRSRVSW 220
Database: nr
Posted date: Jul 5, 2005 12:34 AM
Number of letters in database: 863,360,394
Number of sequences in database: 2,540,612
Lambda K H
0.323 0.138 0.460
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 297,315,203
Number of Sequences: 2540612
Number of extensions: 11559813
Number of successful extensions: 25745
Number of sequences better than 10.0: 129
Number of HSP's better than 10.0 without gapping: 68
Number of HSP's successfully gapped in prelim test: 61
Number of HSP's that attempted gapping in prelim test: 25608
Number of HSP's gapped (non-prelim): 134
length of query: 172
length of database: 863,360,394
effective HSP length: 119
effective length of query: 53
effective length of database: 561,027,566
effective search space: 29734460998
effective search space used: 29734460998
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 70 (31.6 bits)
Lotus: description of TM0290.16