BLAST2 result
BLASTP 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TM0290.12
(143 letters)
Database: nr
2,540,612 sequences; 863,360,394 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAN38679.1| At4g34190/F28A23_50 [Arabidopsis thaliana] gi|216... 152 1e-36
emb|CAB80136.1| putative protein [Arabidopsis thaliana] gi|29110... 148 2e-35
gb|AAD48034.1| differentially expressed osmotic protein ODE1 [Ca... 101 3e-21
gb|AAP53595.1| putative stress enhanced protein [Oryza sativa (j... 100 1e-20
ref|YP_171980.1| possible high light inducible polypeptide HliC ... 44 6e-04
dbj|BAD67138.1| Lhc-like protein Lhl4 [Chlamydomonas reinhardtii... 44 0.001
emb|CAA59007.1| precursor of photosystem II subunit (22KDa) [Nic... 42 0.004
ref|NP_924389.1| CAB/ELIP/HLIP-related protein [Gloeobacter viol... 41 0.005
gb|AAC16403.1| early light-induced protein [Glycine max] gi|7447... 40 0.015
ref|ZP_00160257.1| hypothetical protein Avar03003346 [Anabaena v... 40 0.015
ref|ZP_00519269.1| CAB/ELIP/HLIP superfamily [Crocosphaera watso... 39 0.020
emb|CAA33728.1| unnamed protein product [Hordeum vulgare subsp. ... 39 0.020
emb|CAE08695.1| possible high light inducible protein [Synechoco... 39 0.020
pir||S01056 early light-induced protein precursor - garden pea 39 0.020
ref|ZP_00518551.1| possible high light inducible polypeptide Hli... 39 0.026
ref|NP_440923.1| CAB/ELIP/HLIP superfamily [Synechocystis sp. PC... 39 0.026
gb|AAP99156.1| High light inducible protein hli4 [Prochlorococcu... 39 0.034
ref|NP_915673.1| putative photosystem II subunit (22KDa) precurs... 39 0.034
pir||T06331 photosystem II 22K protein - tomato gi|706853|gb|AAA... 38 0.045
dbj|BAD95419.1| Photosystem II chlorophyll-binding protein PsbS ... 38 0.045
>gb|AAN38679.1| At4g34190/F28A23_50 [Arabidopsis thaliana]
gi|21617911|gb|AAM66961.1| unknown [Arabidopsis
thaliana] gi|19699301|gb|AAL91261.1| AT4g34190/F28A23_50
[Arabidopsis thaliana] gi|7384978|gb|AAF61625.1| stress
enhanced protein 1; SEP1 [Arabidopsis thaliana]
gi|18418396|ref|NP_567958.1| stress enhanced protein 1
(SEP1) [Arabidopsis thaliana]
Length = 146
Score = 152 bits (385), Expect = 1e-36
Identities = 89/147 (60%), Positives = 110/147 (74%), Gaps = 5/147 (3%)
Query: 1 MALATQTSASLSISFRDACVFPAAKYS---ATARFPLPNLVPSRASFATGTPLL-IRRSH 56
MAL+ Q SASL+ S ++ A + +T R +P L R++FA+G+PLL ++ S
Sbjct: 1 MALS-QVSASLAFSLPNSGALKLATITNPTSTCRVHVPQLAGIRSTFASGSPLLPLKLSM 59
Query: 57 GRKLACRAMPVSIRSEQSTKDGNGLDVWLGRLAMIGFAAGITVEVATGKGLLENFGVASP 116
R+ RA VSIRSEQST+ +GLD+WLGR AM+GFA ITVE++TGKGLLENFGVASP
Sbjct: 60 TRRGGNRAASVSIRSEQSTEGSSGLDIWLGRGAMVGFAVAITVEISTGKGLLENFGVASP 119
Query: 117 LPTVALAVTALVGVLTAVFIFQSASKN 143
LPTVALAVTALVGVL AVFIFQS+SKN
Sbjct: 120 LPTVALAVTALVGVLAAVFIFQSSSKN 146
>emb|CAB80136.1| putative protein [Arabidopsis thaliana] gi|2911043|emb|CAA17553.1|
putative protein [Arabidopsis thaliana]
gi|7486286|pir||T05417 hypothetical protein F28A23.50 -
Arabidopsis thaliana
Length = 134
Score = 148 bits (374), Expect = 2e-35
Identities = 79/118 (66%), Positives = 96/118 (80%), Gaps = 1/118 (0%)
Query: 27 SATARFPLPNLVPSRASFATGTPLL-IRRSHGRKLACRAMPVSIRSEQSTKDGNGLDVWL 85
++T R +P L R++FA+G+PLL ++ S R+ RA VSIRSEQST+ +GLD+WL
Sbjct: 17 TSTCRVHVPQLAGIRSTFASGSPLLPLKLSMTRRGGNRAASVSIRSEQSTEGSSGLDIWL 76
Query: 86 GRLAMIGFAAGITVEVATGKGLLENFGVASPLPTVALAVTALVGVLTAVFIFQSASKN 143
GR AM+GFA ITVE++TGKGLLENFGVASPLPTVALAVTALVGVL AVFIFQS+SKN
Sbjct: 77 GRGAMVGFAVAITVEISTGKGLLENFGVASPLPTVALAVTALVGVLAAVFIFQSSSKN 134
>gb|AAD48034.1| differentially expressed osmotic protein ODE1 [Capsicum annuum]
Length = 60
Score = 101 bits (252), Expect = 3e-21
Identities = 50/59 (84%), Positives = 56/59 (94%)
Query: 85 LGRLAMIGFAAGITVEVATGKGLLENFGVASPLPTVALAVTALVGVLTAVFIFQSASKN 143
+GR AM+GFAA I+VE+ATGKGLLENFG++ PLPTVALAVTALVGVLTAVFIFQSASKN
Sbjct: 2 IGRSAMVGFAAAISVEIATGKGLLENFGISGPLPTVALAVTALVGVLTAVFIFQSASKN 60
>gb|AAP53595.1| putative stress enhanced protein [Oryza sativa (japonica
cultivar-group)] gi|37534012|ref|NP_921308.1| putative
stress enhanced protein [Oryza sativa (japonica
cultivar-group)] gi|21263203|gb|AAM44880.1| Putative
stress enhanced protein [Oryza sativa (japonica
cultivar-group)] gi|20503044|gb|AAM22732.1| putative
stress enhanced protein [Oryza sativa (japonica
cultivar-group)]
Length = 138
Score = 99.8 bits (247), Expect = 1e-20
Identities = 57/111 (51%), Positives = 72/111 (64%), Gaps = 12/111 (10%)
Query: 38 VPSRASFATGTPLLIRRSHGRKLACRAMPVSIRSEQSTKDGNG-----LDVWLGRLAMIG 92
V S S A G+ + +RR R L ++R EQ K G G LDVWL R AM+G
Sbjct: 35 VTSACSAAPGSLVSMRRQKARSL-------TVRCEQGAKGGGGGGGGGLDVWLSRGAMLG 87
Query: 93 FAAGITVEVATGKGLLENFGVASPLPTVALAVTALVGVLTAVFIFQSASKN 143
F A ITVE+ TGKG+L+N G+ SP+PTVALA+T +VGV TA IFQSAS++
Sbjct: 88 FVAAITVELTTGKGVLQNVGLTSPVPTVALALTGVVGVATAFLIFQSASQD 138
>ref|YP_171980.1| possible high light inducible polypeptide HliC [Synechococcus
elongatus PCC 6301] gi|56686238|dbj|BAD79460.1| possible
high light inducible polypeptide HliC [Synechococcus
elongatus PCC 6301]
Length = 47
Score = 44.3 bits (103), Expect = 6e-04
Identities = 22/45 (48%), Positives = 29/45 (63%), Gaps = 2/45 (4%)
Query: 71 SEQSTKDGNGL--DVWLGRLAMIGFAAGITVEVATGKGLLENFGV 113
SEQ+TK G + W GRLAMIGF G+ E+ TG+G+L G+
Sbjct: 2 SEQNTKFGFTAFAETWNGRLAMIGFVVGLATELLTGQGILSQIGL 46
>dbj|BAD67138.1| Lhc-like protein Lhl4 [Chlamydomonas reinhardtii]
gi|54649972|dbj|BAD67137.1| Lhc-like protein Lhl4
[Chlamydomonas reinhardtii]
Length = 285
Score = 43.5 bits (101), Expect = 0.001
Identities = 20/51 (39%), Positives = 30/51 (58%)
Query: 82 DVWLGRLAMIGFAAGITVEVATGKGLLENFGVASPLPTVALAVTALVGVLT 132
+ W+GR +M+GF + I VE ATGKG L G+ +P + A+ + G T
Sbjct: 60 ETWVGRWSMMGFVSSIVVEFATGKGTLAQVGLDAPSMPLLAAMCVIFGGAT 110
Score = 31.6 bits (70), Expect = 4.2
Identities = 13/23 (56%), Positives = 17/23 (73%)
Query: 86 GRLAMIGFAAGITVEVATGKGLL 108
GR AM+GF A I VE TG+G++
Sbjct: 244 GRAAMLGFLAAILVEAGTGEGII 266
>emb|CAA59007.1| precursor of photosystem II subunit (22KDa) [Nicotiana tabacum]
gi|18203444|sp|Q9SMB4|PSBS_TOBAC Photosystem II 22 kDa
protein, chloroplast precursor (CP22)
Length = 274
Score = 41.6 bits (96), Expect = 0.004
Identities = 27/95 (28%), Positives = 50/95 (52%), Gaps = 14/95 (14%)
Query: 35 PNLVPSRASFATGTPLLIRRSHGRKLACRAMPVSIRSEQSTKDG-----NGL------DV 83
P+ S +S T T + + +S + A + +P + ++ +DG G+ ++
Sbjct: 43 PSASASASSHFTSTTVALFKSKAKAPAKKVVP---KPKEKVEDGIFGTSGGIGFTKQNEL 99
Query: 84 WLGRLAMIGFAAGITVEVATGKGLLENFGVASPLP 118
++GR+AMIGFAA + E TGKG+L + + +P
Sbjct: 100 FVGRVAMIGFAASLLGEAITGKGILAQLNLETGIP 134
Score = 32.7 bits (73), Expect = 1.9
Identities = 19/59 (32%), Positives = 30/59 (50%), Gaps = 3/59 (5%)
Query: 82 DVWLGRLAMIGFAAGITVEVATGKGLLENFGVASPLPTVALAVTALVGVLTAVFIFQSA 140
++++GRLA +G A I E+ TGKG L + +P + L + VF F +A
Sbjct: 204 ELFVGRLAQLGIAFSIIGEIITGKGALAQLNFETGVPINEIEPLLLFNI---VFFFVAA 259
>ref|NP_924389.1| CAB/ELIP/HLIP-related protein [Gloeobacter violaceus PCC 7421]
gi|35212008|dbj|BAC89384.1| CAB/ELIP/HLIP-related
protein [Gloeobacter violaceus PCC 7421]
Length = 52
Score = 41.2 bits (95), Expect = 0.005
Identities = 19/28 (67%), Positives = 23/28 (81%)
Query: 86 GRLAMIGFAAGITVEVATGKGLLENFGV 113
GRLAMIGFAA + VE+ATGKG+L G+
Sbjct: 24 GRLAMIGFAAALVVELATGKGVLSFLGL 51
>gb|AAC16403.1| early light-induced protein [Glycine max] gi|7447856|pir||JC5876
early light-inducible protein precursor - soybean
Length = 192
Score = 39.7 bits (91), Expect = 0.015
Identities = 28/61 (45%), Positives = 38/61 (61%), Gaps = 5/61 (8%)
Query: 86 GRLAMIGFAAGITVEVATGKGLLE---NFGVASPLPT-VALAVTALVGVLTAVFIFQSAS 141
GRLAMIGF A + VEVA G+G+LE N G+ L T V L + +L+ + V + +S S
Sbjct: 99 GRLAMIGFVAAMAVEVAIGQGVLEQISNGGIPWFLGTSVVLTLASLIPLFQGVSV-ESKS 157
Query: 142 K 142
K
Sbjct: 158 K 158
>ref|ZP_00160257.1| hypothetical protein Avar03003346 [Anabaena variabilis ATCC 29413]
Length = 59
Score = 39.7 bits (91), Expect = 0.015
Identities = 16/32 (50%), Positives = 24/32 (75%)
Query: 82 DVWLGRLAMIGFAAGITVEVATGKGLLENFGV 113
++W GRLAMIGF A I +E+ +G+G L +G+
Sbjct: 27 EIWNGRLAMIGFLAAILIELFSGQGFLHFWGI 58
>ref|ZP_00519269.1| CAB/ELIP/HLIP superfamily [Crocosphaera watsonii WH 8501]
gi|67852148|gb|EAM47641.1| CAB/ELIP/HLIP superfamily
[Crocosphaera watsonii WH 8501]
Length = 50
Score = 39.3 bits (90), Expect = 0.020
Identities = 16/30 (53%), Positives = 23/30 (76%)
Query: 84 WLGRLAMIGFAAGITVEVATGKGLLENFGV 113
W GRLAMIGF + + VE+ TG+G+L +G+
Sbjct: 20 WNGRLAMIGFVSALIVELVTGQGVLHFWGI 49
>emb|CAA33728.1| unnamed protein product [Hordeum vulgare subsp. vulgare]
gi|100628|pir||S07475 early light-induced protein, high
molecular weight, precursor (clone HV58) - barley
chloroplast gi|119284|sp|P14895|ELI5_HORVU High
molecular mass early light-inducible protein HV58,
chloroplast precursor (ELIP)
Length = 231
Score = 39.3 bits (90), Expect = 0.020
Identities = 22/56 (39%), Positives = 31/56 (55%)
Query: 86 GRLAMIGFAAGITVEVATGKGLLENFGVASPLPTVALAVTALVGVLTAVFIFQSAS 141
GRLAM+GF A ++VE A G GLL+ G+ S LA + V + + + Q S
Sbjct: 134 GRLAMVGFVAALSVEAARGGGLLDQVGMWSSGLAWFLATAGVFSVASLLPLLQGQS 189
>emb|CAE08695.1| possible high light inducible protein [Synechococcus sp. WH 8102]
gi|33866712|ref|NP_898271.1| possible high light
inducible protein [Synechococcus sp. WH 8102]
Length = 46
Score = 39.3 bits (90), Expect = 0.020
Identities = 16/35 (45%), Positives = 23/35 (65%)
Query: 79 NGLDVWLGRLAMIGFAAGITVEVATGKGLLENFGV 113
N + W GRLAM+GF G+ E+ TG+G+L G+
Sbjct: 11 NFAETWNGRLAMMGFVIGLGTELLTGQGILSQIGL 45
>pir||S01056 early light-induced protein precursor - garden pea
Length = 196
Score = 39.3 bits (90), Expect = 0.020
Identities = 28/62 (45%), Positives = 38/62 (61%), Gaps = 5/62 (8%)
Query: 86 GRLAMIGFAAGITVEVATGKGLLENF---GVASPLPT-VALAVTALVGVLTAVFIFQSAS 141
GRLAMIGF A + VE+A G+GL E GVA L T V L++ +L+ V + +S S
Sbjct: 103 GRLAMIGFVAAMGVEIAKGQGLSEQLSGGGVAGFLGTSVLLSLASLIPFFQGVSV-ESKS 161
Query: 142 KN 143
K+
Sbjct: 162 KS 163
>ref|ZP_00518551.1| possible high light inducible polypeptide HliC [Crocosphaera
watsonii WH 8501] gi|67852963|gb|EAM48353.1| possible
high light inducible polypeptide HliC [Crocosphaera
watsonii WH 8501]
Length = 47
Score = 38.9 bits (89), Expect = 0.026
Identities = 16/30 (53%), Positives = 20/30 (66%)
Query: 84 WLGRLAMIGFAAGITVEVATGKGLLENFGV 113
W GRLAM+GF GI E TG+G+L G+
Sbjct: 17 WNGRLAMLGFVIGIVTEYMTGQGILSQLGL 46
>ref|NP_440923.1| CAB/ELIP/HLIP superfamily [Synechocystis sp. PCC 6803]
gi|1652683|dbj|BAA17603.1| CAB/ELIP/HLIP superfamily
[Synechocystis sp. PCC 6803] gi|7448449|pir||S77269
CAB/ELIP/HLIP-related protein - Synechocystis sp.
(strain PCC 6803)
Length = 70
Score = 38.9 bits (89), Expect = 0.026
Identities = 15/30 (50%), Positives = 24/30 (80%)
Query: 84 WLGRLAMIGFAAGITVEVATGKGLLENFGV 113
W GRLAMIGF++ + +E+ +G+G+L FG+
Sbjct: 40 WNGRLAMIGFSSALILELVSGQGVLHFFGI 69
>gb|AAP99156.1| High light inducible protein hli4 [Prochlorococcus marinus subsp.
marinus str. CCMP1375] gi|33239562|ref|NP_874504.1| High
light inducible protein hli4 [Prochlorococcus marinus
subsp. marinus str. CCMP1375]
Length = 49
Score = 38.5 bits (88), Expect = 0.034
Identities = 15/34 (44%), Positives = 23/34 (67%)
Query: 79 NGLDVWLGRLAMIGFAAGITVEVATGKGLLENFG 112
N ++W GRLAM+G G++ E+ TG+G+L G
Sbjct: 14 NYAEIWNGRLAMLGIVIGLSTELLTGQGILGQIG 47
>ref|NP_915673.1| putative photosystem II subunit (22KDa) precursor [Oryza sativa
(japonica cultivar-group)] gi|20160872|dbj|BAB89811.1|
putative photosystem II subunit PsbS [Oryza sativa
(japonica cultivar-group)] gi|15408693|dbj|BAB64099.1|
putative photosystem II subunit PsbS [Oryza sativa
(japonica cultivar-group)]
Length = 268
Score = 38.5 bits (88), Expect = 0.034
Identities = 28/101 (27%), Positives = 48/101 (46%), Gaps = 15/101 (14%)
Query: 33 PLPNLVPSRASFATGTPLLIRR----SHGRKLACRAMPVSIRSEQSTKDG-----NGL-- 81
P LV S+ S + G + ++ + A A + + T+DG G+
Sbjct: 29 PFSRLVLSQPSSSLGRAVSVKTVALFGRSKTKAAPARKAEPKPKFKTEDGIFGTSGGIGF 88
Query: 82 ----DVWLGRLAMIGFAAGITVEVATGKGLLENFGVASPLP 118
++++GR+AM+GFAA I E TGKG+L + + +P
Sbjct: 89 TKENELFVGRVAMLGFAASILGEAITGKGILAQLNLETGIP 129
Score = 34.7 bits (78), Expect = 0.50
Identities = 20/59 (33%), Positives = 31/59 (51%), Gaps = 3/59 (5%)
Query: 82 DVWLGRLAMIGFAAGITVEVATGKGLLENFGVASPLPTVALAVTALVGVLTAVFIFQSA 140
++++GRLA +G A I E+ TGKG L + + +P + L V VF F +A
Sbjct: 198 ELFVGRLAQLGIAFSIIGEIITGKGALAQLNIETGVPINEIEPLVLFNV---VFFFIAA 253
>pir||T06331 photosystem II 22K protein - tomato gi|706853|gb|AAA63649.1| 22 kDa
component of photosystem II
gi|1709846|sp|P54773|PSBS_LYCES Photosystem II 22 kDa
protein, chloroplast precursor (CP22)
Length = 276
Score = 38.1 bits (87), Expect = 0.045
Identities = 16/37 (43%), Positives = 26/37 (70%)
Query: 82 DVWLGRLAMIGFAAGITVEVATGKGLLENFGVASPLP 118
++++GR+AMIGFAA + E TGKG+L + + +P
Sbjct: 100 ELFVGRVAMIGFAASLLGEAITGKGILAQLNLETGIP 136
Score = 31.6 bits (70), Expect = 4.2
Identities = 14/37 (37%), Positives = 22/37 (58%)
Query: 82 DVWLGRLAMIGFAAGITVEVATGKGLLENFGVASPLP 118
++++GRLA +G A I E+ TGKG L + +P
Sbjct: 206 ELFVGRLAQLGIAFSIIGEIITGKGALAQLNFETGVP 242
>dbj|BAD95419.1| Photosystem II chlorophyll-binding protein PsbS [Arabidopsis
thaliana] gi|4741962|gb|AAD28778.1| PsbS protein
[Arabidopsis thaliana] gi|15219418|ref|NP_175092.1|
photosystem II 22kDa protein, chloroplast / CP22 (PSBS)
[Arabidopsis thaliana] gi|13876505|gb|AAK43481.1|
photosystem II 22kDa protein, putative [Arabidopsis
thaliana] gi|25350606|pir||T52313 photosystem II protein
[imported] - Arabidopsis thaliana
gi|17380270|sp|Q9XF91|PSBS_ARATH Photosystem II 22 kDa
protein, chloroplast precursor (CP22)
Length = 265
Score = 38.1 bits (87), Expect = 0.045
Identities = 16/37 (43%), Positives = 26/37 (70%)
Query: 82 DVWLGRLAMIGFAAGITVEVATGKGLLENFGVASPLP 118
++++GR+AMIGFAA + E TGKG+L + + +P
Sbjct: 90 ELFVGRVAMIGFAASLLGEALTGKGILAQLNLETGIP 126
Score = 34.3 bits (77), Expect = 0.65
Identities = 18/56 (32%), Positives = 30/56 (53%), Gaps = 2/56 (3%)
Query: 82 DVWLGRLAMIGFAAGITVEVATGKGLLENFGVASPLPTVALAVTALVGVLTAVFIF 137
++++GRLA +G A + E+ TGKG L + + +P + L+ V A F F
Sbjct: 194 ELFVGRLAQLGIAFSLIGEIITGKGALAQLNIETGIPIQDIEPLVLLNV--AFFFF 247
Database: nr
Posted date: Jul 5, 2005 12:34 AM
Number of letters in database: 863,360,394
Number of sequences in database: 2,540,612
Lambda K H
0.321 0.133 0.378
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 207,707,117
Number of Sequences: 2540612
Number of extensions: 7944964
Number of successful extensions: 20665
Number of sequences better than 10.0: 130
Number of HSP's better than 10.0 without gapping: 89
Number of HSP's successfully gapped in prelim test: 41
Number of HSP's that attempted gapping in prelim test: 20532
Number of HSP's gapped (non-prelim): 170
length of query: 143
length of database: 863,360,394
effective HSP length: 119
effective length of query: 24
effective length of database: 561,027,566
effective search space: 13464661584
effective search space used: 13464661584
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 67 (30.4 bits)
Lotus: description of TM0290.12