BLAST2 result
BLASTP 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TM0288.7
(1771 letters)
Database: nr
2,540,612 sequences; 863,360,394 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAB82639.1| putative non-LTR retroelement reverse transcripta... 798 0.0
gb|AAP54617.1| putative non-LTR retroelement reverse transcripta... 770 0.0
pir||T00833 RNA-directed DNA polymerase homolog T13L16.7 - Arabi... 736 0.0
gb|AAD03565.2| putative non-LTR retroelement reverse transcripta... 720 0.0
gb|AAD21778.1| putative non-LTR retroelement reverse transcripta... 693 0.0
pir||S65812 RNA-directed DNA polymerase (EC 2.7.7.49) (clone DW1... 683 0.0
gb|AAD20714.1| putative non-LTR retroelement reverse transcripta... 679 0.0
gb|AAD24831.1| putative non-LTR retroelement reverse transcripta... 677 0.0
gb|AAC33961.1| contains similarity to reverse trancriptase (Pfam... 665 0.0
gb|AAQ19327.1| bZIP-like protein [Oryza sativa (japonica cultiva... 664 0.0
gb|AAV32224.1| hypothetical protein [Oryza sativa (japonica cult... 663 0.0
gb|AAF97969.1| F21J9.30 [Arabidopsis thaliana] 652 0.0
emb|CAB78094.1| RNA-directed DNA polymerase-like protein [Arabid... 645 0.0
gb|AAD24601.1| putative non-LTR retroelement reverse transcripta... 640 0.0
pir||G86379 protein F5A9.24 [imported] - Arabidopsis thaliana gi... 639 0.0
gb|AAD29058.1| putative non-LTR retroelement reverse transcripta... 602 e-170
gb|AAG51783.1| reverse transcriptase, putative; 16838-20266 [Ara... 595 e-168
emb|CAB81184.1| putative protein [Arabidopsis thaliana] gi|45393... 588 e-166
gb|AAB84340.1| putative non-LTR retroelement reverse transcripta... 570 e-160
gb|AAX95232.1| retrotransposon protein, putative, unclassified [... 561 e-158
>gb|AAB82639.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
thaliana] gi|25408936|pir||A84888 hypothetical protein
At2g45230 [imported] - Arabidopsis thaliana
Length = 1374
Score = 798 bits (2060), Expect = 0.0
Identities = 463/1393 (33%), Positives = 716/1393 (51%), Gaps = 49/1393 (3%)
Query: 401 MMILSWNCRGVAATPTGRELRTLCSKNKPTIVFLMETRSKKENLEVIRRSLGFDYLFTVN 460
M ILSWNC+GV TPT R LR + P ++FL ET+ ++ LE + LGF L TV
Sbjct: 1 MRILSWNCQGVGNTPTVRHLREIRGLYFPEVIFLCETKKRRNYLENVVGHLGFFDLHTVE 60
Query: 461 PRGLSGGLALFWKREVHIQILHSSQNYIHTSIFANNSVSDWDCTFVYGDPSSQRRRFLWP 520
P G SGGLAL WK V I++L S + I + + ++ T +YG+P R LW
Sbjct: 61 PIGKSGGLALMWKDSVQIKVLQSDKRLIDALLIWQDK--EFYLTCIYGEPVQAERGELWE 118
Query: 521 QITALRFRDNTPWCLLGDFNEILFAHEKEGMRPQPPSVLQRFREFVHNSGLMDVDLKGSR 580
++T L + PW L GDFNE++ EK G + S FR+ +++ GL +V+ G +
Sbjct: 119 RLTRLGLSRSGPWMLTGDFNELVDPSEKIGGPARKESSCLEFRQMLNSCGLWEVNHSGYQ 178
Query: 581 FTWHSNPRDGFVTREKIDRVLTNWSWRNIFPNASAMAYPQISSDHSPILLDLSPPTWSK- 639
F+W+ N D V + ++DR + N +W +FP A A +I SDHSP++ +L W K
Sbjct: 179 FSWYGNRNDELV-QCRLDRTVANQAWMELFPQAKATYLQKICSDHSPLINNLVGDNWRKW 237
Query: 640 TPFKYEVFWDEHEQCSEVVAEGWLKPLHNEDCWKDLENRIKSSKRTIWSWQRKTFKVAEK 699
FKY+ W + E +++ W + + + +I S +R I W+R + +
Sbjct: 238 AGFKYDKRWVQREGFKDLLCNFWSQQSTKTNAL--MMEKIASCRREISKWKRVSKPSSAV 295
Query: 700 EIGRLKQELQSKQDRPNHLV--DWNEVKNIKLEIDTLWRQEELFWGQRSRVKWA*YGDKN 757
I QELQ K D + D E+ +K E+ + EE FW ++SR+ W GD+N
Sbjct: 296 RI----QELQFKLDAATKQIPFDRRELARLKKELSQEYNNEEQFWQEKSRIMWMRNGDRN 351
Query: 758 SKFFHASTLKRRNRNRIDRVCDAQGTWKEGQTEVMHAFVSHYEEIFQSEGVNQIEDCLRG 817
+K+FHA+T RR +NRI ++ D +G ++ ++++++F SE V + L
Sbjct: 352 TKYFHAATKNRRAQNRIQKLIDEEGREWTSDEDLGRVAEAYFKKLFASEDVGYTVEELEN 411
Query: 818 FPRKVTAELNNRLIMPASDAEIAEAVNLLGGLKAPGPDGLNGLFFKNHWATIQDSVCYAI 877
V+ ++NN L+ P + E+ A + K PGPDG+NG ++ W T+ D + +
Sbjct: 412 LTPLVSDQMNNNLLAPITKEEVQRATFSINPHKCPGPDGMNGFLYQQFWETMGDQITEMV 471
Query: 878 KEFFST*NL*AEINETIVALVPKVDSPESVVQFRPISCCNYILKVISRIMVTRLKDDLNL 937
+ FF + ++ +N+T + L+PK+ E + FRPIS CN I KVI ++M RLK L
Sbjct: 472 QAFFRSGSIEEGMNKTNICLIPKILKAEKMTDFRPISLCNVIYKVIGKLMANRLKKILPS 531
Query: 938 LISPNQSAFVGGRLIQDNITVSQEAFHLLQRGESRMKDYMAIKVDMSKTYDRLEWTFLEK 997
LIS Q+AFV GRLI DNI ++ E H L ++++AIK D+SK YDR+EW FLEK
Sbjct: 532 LISETQAAFVKGRLISDNILIAHELLHALSSNNKCSEEFIAIKTDISKAYDRVEWPFLEK 591
Query: 998 TLLAYGFHPIWTARVLTLVKGATYKLKVNGFLSSTLTPGRGLRQGDPLSPYLFVLATDVL 1057
+ GF W ++ VK Y++ +NG + P RGLRQGDPLSPYLFV+ T++L
Sbjct: 592 AMRGLGFADHWIRLIMECVKSVRYQVLINGTPHGEIIPSRGLRQGDPLSPYLFVICTEML 651
Query: 1058 SFMLTQAQRDGEISGFRFTPHSPPLTHLFFADDSLLFAEATVKEATSIIHILNLYNRASG 1117
ML A++ +I+G + +PP++HL FADDS+ + + + II I+ Y+ ASG
Sbjct: 652 VKMLQSAEQKNQITGLKVARGAPPISHLLFADDSMFYCKVNDEALGQIIRIIEEYSLASG 711
Query: 1118 QRINVAKSGLIFGRSASNRVKRDISNLLHMAIWDSPGQYLGLPAIWGRNKCHSLAWIEER 1177
QR+N KS + FG+ S + + L + G YLGLP + +K +L+++++R
Sbjct: 712 QRVNYLKSSIYFGKHISEERRCLVKRKLGIEREGGEGVYLGLPESFQGSKVATLSYLKDR 771
Query: 1178 VKEKLEGWKETLLNQAGKEVLIKAIIQAIPLYAMAMVHFPKTFCNSLNSLVANFWWKGQG 1237
+ +K+ GW+ L+ GKE+L+KA+ A+P Y M+ PKT C + S++A FWWK +
Sbjct: 772 LGKKVLGWQSNFLSPGGKEILLKAVAMALPTYTMSCFKIPKTICQQIESVMAEFWWKNKK 831
Query: 1238 KDRGIHWRSWEKMTLSKDEGGMGFREFRMQNLAILAKQAWRVLTNPEALWVCVLKSVYFP 1297
+ RG+HW++W ++ K GG+GF+E N+A+L KQ WR++T ++L V KS YF
Sbjct: 832 EGRGLHWKAWCHLSRPKAVGGLGFKEIEAFNIALLGKQLWRMITEKDSLMAKVFKSRYFS 891
Query: 1298 TSDFLNASLGRNPSWMWRSLLAGRDFISRYIRWAVGGGLLIEVWGDNWLSSGEA------ 1351
SD LNA LG PS+ W+S+ + I + IR +G G I VW D W+ + A
Sbjct: 892 KSDPLNAPLGSRPSFAWKSIYEAQVLIKQGIRAVIGNGETINVWTDPWIGAKPAKAAQAV 951
Query: 1352 ----LIQPHNAPDMK-VSELISPHGEGWNSALVRSLFQPELALKVLQTPVSKLNQTDVLF 1406
L+ + A + V +L+ P G WN LV LF +L D
Sbjct: 952 KRSHLVSQYAANSIHVVKDLLLPDGRDWNWNLVSLLFPDNTQENILALRPGGKETRDRFT 1011
Query: 1407 WPHTPKGDYTVSSGF----EIARSNSIKPQALSSRSHNIPELLWRTIWKSQLPQKVKVFL 1462
W ++ G Y+V SG+ EI + PQ + S + +++ IWK +P K+ FL
Sbjct: 1012 WEYSRSGHYSVKSGYWVMTEIINQRN-NPQEVLQPS---LDPIFQQIWKLDVPPKIHHFL 1067
Query: 1463 WKASHNSLAVKYNLWRKRILPSGQCPVCCEAQETVEHMFFVCPWTRAVWFGSSLQWVVSP 1522
W+ +N L+V NL + + C C ETV H+ F CP+ R L W +SP
Sbjct: 1068 WRCVNNCLSVASNLAYRHLAREKSCVRCPSHGETVNHLLFKCPFAR-------LTWAISP 1120
Query: 1523 QGLGSFDVWL------LQKITALQTISLDFNKDFSTLACILWSIWRGRNKAVFNAIRPDP 1576
W + + ++ + + + + ILW +W+ RN VF
Sbjct: 1121 LPAPPGGEWAESLFRNMHHVLSVHKSQPEESDHHALIPWILWRLWKNRNDLVFKGREFTA 1180
Query: 1577 TFAIQQVASTLSAIDLAKPVTEKVISDGNQNTNQRPTAWRPPFGNLLKINVDASWVSSVP 1636
I + + A + K +V S +T R W+PP +K N D +W +
Sbjct: 1181 PQVILKATEDMDAWNNRKEPQPQVTS----STRDRCVKWQPPSHGWVKCNTDGAWSKDLG 1236
Query: 1637 QSAVGVLIRDKFSTLL-AGSHAKVYSSSPLTAEASAIREGLSLAHNLGCPEIIMESDSKI 1695
VG ++R+ LL G A S L E A+R + +I ESDS+
Sbjct: 1237 NCGVGWVLRNHTGRLLWLGLRALPSQQSVLETEVEALRWAVLSLSRFNYRRVIFESDSQY 1296
Query: 1696 LIDACKSETLVGEASAILQDIFYLKRLFYRCDFAWANRERNNSAHLVAKMCMQNFLLDNW 1755
L+ ++E + + +QDI L R F F + RE NN A A+ + D
Sbjct: 1297 LVSLIQNEMDIPSLAPRIQDIRNLLRHFEEVKFQFTRREGNNVADRTARESLSLMNYDPK 1356
Query: 1756 MFKLPQELRRALV 1768
M+ + + + LV
Sbjct: 1357 MYSITPDWIKNLV 1369
>gb|AAP54617.1| putative non-LTR retroelement reverse transcriptase [Oryza sativa
(japonica cultivar-group)] gi|37536056|ref|NP_922330.1|
putative non-LTR retroelement reverse transcriptase
[Oryza sativa (japonica cultivar-group)]
gi|10140689|gb|AAG13524.1| putative non-LTR retroelement
reverse transcriptase [Oryza sativa (japonica
cultivar-group)]
Length = 1382
Score = 770 bits (1988), Expect = 0.0
Identities = 455/1373 (33%), Positives = 700/1373 (50%), Gaps = 54/1373 (3%)
Query: 403 ILSW--NCRGVAATPTGRELRTLCSKNKPTIVFLMETRSKKENLEVIRRSLGFDYLFTVN 460
+++W NCRG+ + T ELR L +P++VFL ET+ + + + SLGF F V+
Sbjct: 6 LVTWGRNCRGLGSAATVGELRWLVKSLRPSLVFLSETKMRDKQARNLMWSLGFSGSFAVS 65
Query: 461 PRGLSGGLALFWKREVHIQILHSSQNYIHTSIFANNSVSDWDCTFVYGDPSSQRRRFLWP 520
GLSGGLALFW + + + ++I + + + W +FVYG+P + R F W
Sbjct: 66 CEGLSGGLALFWTTAYTVSLRGFNSHFIDVLV-STEELPPWRISFVYGEPKRELRHFFWN 124
Query: 521 QITALRFRDNTPWCLLGDFNEILFAHEKEGMRPQPPSVLQRFREFVHNSGLMDVDLKGSR 580
+ L + PW GDFNE+L E GMR + +Q FR + + GL+D+ G +
Sbjct: 125 LLRRLHDQWRGPWLCCGDFNEVLCLDEHLGMRERSEPHMQHFRSCLDDCGLIDLGFVGPK 184
Query: 581 FTWHSNPRDGFVTREKIDRVLTNWSWRNIFPNASAMAYPQISSDHSPILLDLSPPTWSKT 640
FTW + ++ ++DR + N + F + SSDH I +DLS +
Sbjct: 185 FTWSNKQDANSNSKVRLDRAVANGEFSRYFEDCLVENVITTSSDHYAISIDLSRRNHGQR 244
Query: 641 P------FKYEVFWDEHEQCSEVVAEGWLKPLHNEDC------WKDLENRIKSSKRTIWS 688
F++E W E EVV W + + C W L+ S K
Sbjct: 245 RIPIQQGFRFEAAWLRAEDYREVVENSWR--ISSAGCVGLRGVWSVLQQVAVSLK----D 298
Query: 689 WQRKTFKVAEKEIGRLKQELQSKQDRPNHLVDWNEVKNIKLEIDTLWRQEELFWGQRSRV 748
W + +F ++I +++++L+S + P + V E K I+ ++ L+ +EE+ QRSRV
Sbjct: 299 WSKASFGSVRRKILKMERKLKSLRQSPVNDVVIQEEKLIEQQLCELFEKEEIMARQRSRV 358
Query: 749 KWA*YGDKNSKFFHASTLKRRNRNRIDRVCDAQGTWKEGQTEVMHAFVSHYEEIFQSEGV 808
W GD+N+ FFHA RR NRI + G+ Q + YE +F SE
Sbjct: 359 DWLREGDRNTAFFHARASARRRTNRIKELVRDDGSRCISQEGIKRMAEVFYENLFSSEPC 418
Query: 809 NQIEDCLRGFPRKVTAELNNRLIMPASDAEIAEAVNLLGGLKAPGPDGLNGLFFKNHWAT 868
+ +E+ L P KV +N L ++ EI A+ +G KAPGPDG LF++ HW
Sbjct: 419 DSMEEVLDAIPNKVGDFINGELGKQYTNEEIKTALFQMGSTKAPGPDGFPALFYQTHWGI 478
Query: 869 IQDSVCYAIKEFFST*NL*AEINETIVALVPKVDSPESVVQFRPISCCNYILKVISRIMV 928
+++ +C A++ F + + +++V L+PKV++ + +FRPIS CN + K+ S+++
Sbjct: 479 LEEHICNAVRGFLLGEEIPEGLCDSVVVLIPKVNNASHLSKFRPISLCNVLYKIASKVLA 538
Query: 929 TRLKDDLNLLISPNQSAFVGGRLIQDNITVSQEAFHLLQRGESRMKDYMAIKVDMSKTYD 988
RLK L ++S QSAFV GRLI D+ V+ E H +++ ++ + A+K+DM K YD
Sbjct: 539 NRLKPFLPDIVSEFQSAFVPGRLITDSALVAYECLHTIRKQHNK-NPFFALKIDMMKAYD 597
Query: 989 RLEWTFLEKTLLAYGFHPIWTARVLTLVKGATYKLKVNGFLSSTLTPGRGLRQGDPLSPY 1048
R+EW +L L GF W V+ V Y +K+NG L+ + P RG+RQGDP+SPY
Sbjct: 598 RVEWAYLSGCLSKLGFSQDWINTVMRCVSSVRYAVKINGELTKPVVPSRGIRQGDPISPY 657
Query: 1049 LFVLATDVLSFMLTQAQRDGEISGFRFTPHSPPLTHLFFADDSLLFAEATVKEATSIIHI 1108
LF+L T+ LS +L + + GE+ G + H PP++HL FADDS+ FA+A + ++ +
Sbjct: 658 LFLLCTEGLSCLLHKKEVAGELQGIKNGRHGPPISHLLFADDSIFFAKADSRNVQALKNT 717
Query: 1109 LNLYNRASGQRINVAKSGLIFGRSASNRVKRDISNLLHMAIWDSPGQYLGLPAIWGRNKC 1168
L Y ASGQ+IN+ KS + FG+ + VK + + L + YLG+P G
Sbjct: 718 LRSYCSASGQKINLHKSSIFFGKRCPDAVKISVKSCLQVDNEVLQDSYLGMPTEIGLATT 777
Query: 1169 HSLAWIEERVKEKLEGWKETLLNQAGKEVLIKAIIQAIPLYAMAMVHFPKTFCNSLNSLV 1228
+ ++ ER+ +++ GW + L++AG E ++KA+ QAIP Y M+ P + C + + +
Sbjct: 778 NFFKFLPERIWKRVNGWTDRPLSRAGMETMLKAVAQAIPNYVMSCFRIPVSICEKMKTCI 837
Query: 1229 ANFWWKGQGKDRGIHWRSWEKMTLSKDEGGMGFREFRMQNLAILAKQAWRVLTNPEALWV 1288
A+ WW + + +HW+SW ++ K GGMGFREF N A+L +Q WR+LT+P++L
Sbjct: 838 ADHWWGFEDGKKKMHWKSWSWLSTPKFLGGMGFREFTTFNQAMLGRQCWRLLTDPDSLCS 897
Query: 1289 CVLKSVYFPTSDFLNASLGRNPSWMWRSLLAGRDFISRYIRWAVGGGLLIEVWGDNWLSS 1348
VLK YFP S F A+ ++PS+ WRSLL GR+ +++ +RW VG G I+++ DNW+
Sbjct: 898 RVLKGRYFPNSSFWEAAQPKSPSFTWRSLLFGRELLAKGVRWGVGDGKTIKIFSDNWIPG 957
Query: 1349 GEALIQPHNAP---DMKVSELISPHGEGWNSALVRSLFQPELALKVLQTPVSKLNQTDVL 1405
+ +P D VS L++ W+ L+RSLF ++A ++LQ P+S+ D
Sbjct: 958 FRPQLVTTLSPFPTDATVSCLMNEDARCWDGDLIRSLFPVDIAKEILQIPISRHGDADFA 1017
Query: 1406 FWPHTPKGDYTVSSGFEIARSNSIKPQALSSRSHNIPELL-----WRTIWKSQLPQKVKV 1460
WPH G Y+V S + +ARS + +S LL W+ +WK P K+K+
Sbjct: 1018 SWPHDKLGLYSVRSAYNLARSEAFFADQSNSGRGMASRLLESQKDWKGLWKINAPGKMKI 1077
Query: 1461 FLWKASHNSLAVKYNLWRKRILPSGQCPVCCEAQETVEHMFFVCPWTRAVW--FGSSLQW 1518
LW+A+H LA + L R+R +PS V C +TVEH+F CP+ +W
Sbjct: 1078 TLWRAAHECLATGFQL-RRRHIPSTDGCVFCNRDDTVEHVFLFCPFAAQIWEEIKGKCAV 1136
Query: 1519 VVSPQGLGSFDVWLLQKITALQTISLDFNKDFST-----LACILWSIWRGRNKAVFNAIR 1573
+ G + W+ DF K S+ LA W IW RN N
Sbjct: 1137 KLGRNGFSTMRQWI-----------FDFLKRGSSHANTLLAVTFWHIWEARNNTKNNNGT 1185
Query: 1574 PDPTFAIQQVASTLSAIDLAKPVTEKVISDGNQNTNQRPTAWRPPFGNLLKINVDASWVS 1633
P + V LS +D+ K + Q W+PP ++ IN DA+ S
Sbjct: 1186 VHPQ---RVVIKILSYVDMILKHNTKTVDGQRGGNTQAIPRWQPPPASVWMINSDAAIFS 1242
Query: 1634 SVPQSAVGVLIRDKFSTLLAGSHAKVYS-SSPLTAEASAIREGLSLAHNLGCPEIIMESD 1692
S VG LIRD L + P AEA AIR L LA G I+M SD
Sbjct: 1243 SSRTMGVGALIRDNTGKCLVACSEMISDVVLPELAEALAIRRALGLAKEEGLEHIVMASD 1302
Query: 1693 SKILIDACK-SETLVGEASAILQDIFYLKRLFYRCDFAWANRERNNSAHLVAK 1744
+I + S +++DI L F C F NR N +AH +A+
Sbjct: 1303 CLTVIRRIQTSGRDRSGVGCVIEDIKKLASTFVLCSFMHVNRLSNLAAHSLAR 1355
>pir||T00833 RNA-directed DNA polymerase homolog T13L16.7 - Arabidopsis thaliana
(fragment)
Length = 1365
Score = 736 bits (1899), Expect = 0.0
Identities = 436/1326 (32%), Positives = 686/1326 (50%), Gaps = 36/1326 (2%)
Query: 403 ILSWNCRGVAATPTGRELRTLCSKNKPTIVFLMETRSKKENLEVIRRSLGFDYLFTVNPR 462
++SWNC+G+ T R L+ + + P I+FLMET++ ++ + + LG+D++ TV P
Sbjct: 2 VISWNCQGLRNPWTIRYLKEMKKDHFPDILFLMETKNSQDFVYKVFCWLGYDFIHTVEPE 61
Query: 463 GLSGGLALFWKREVHIQILHSSQNYIHTSIFANNSVSDWDCTFVYGDPSSQRRRFLWPQI 522
G SGGLA+FWK + I+ L++ +N + + + N V W + VYG P + R LW +
Sbjct: 62 GRSGGLAIFWKSHLEIEFLYADKNLMDLQVSSRNKV--WFISCVYGLPVTHMRPKLWEHL 119
Query: 523 TALRFRDNTPWCLLGDFNEILFAHEKEGMRPQPPSVLQRFREFVHNSGLMDVDLKGSRFT 582
++ + WCL+GDFN+I EK G + PS Q F + N + ++ G+ FT
Sbjct: 120 NSIGLKRAEAWCLIGDFNDIRSNDEKLGGPRRSPSSFQCFEHMLLNCSMHELGSTGNSFT 179
Query: 583 WHSNPRDGFVTREKIDRVLTNWSWRNIFPNASAMAYPQISSDHSPILLDLSPPT-WSKTP 641
W N D +V + K+DR N +W +IFPNA + SDH P+L+ + +
Sbjct: 180 WGGNRNDQWV-QCKLDRCFGNPAWFSIFPNAHQWFLEKFGSDHRPVLVKFTNDNELFRGQ 238
Query: 642 FKYEVFWDEHEQCSEVVAEGWLKPLHNEDCWKDLENRIKSSKRTIWSWQRKTFKVAEKEI 701
F+Y+ D+ C EV+ W + ++ + I+ +R I W+ + A+ I
Sbjct: 239 FRYDKRLDDDPYCIEVIHRSWNSAM-SQGTHSSFFSLIEC-RRAISVWKHSSDTNAQSRI 296
Query: 702 GRLKQELQSKQDRPNHLVDWNEVKNIKLEIDTLWRQEELFWGQRSRVKWA*YGDKNSKFF 761
RL+++L + ++ + W ++ IK ++ + EELFW Q+SR KW GDKN+ FF
Sbjct: 297 KRLRKDLDA--EKSIQIPCWPRIEYIKDQLSLAYGDEELFWRQKSRQKWLAGGDKNTGFF 354
Query: 762 HASTLKRRNRNRIDRVCDAQGTWKEGQTEVMHAFVSHYEEIFQSEGVNQIEDCLRGFPRK 821
HA+ R +N + + D ++ S +E +F S + + L G K
Sbjct: 355 HATVHSERLKNELSFLLDENDQEFTRNSDKGKIASSFFENLFTSTYILTHNNHLEGLQAK 414
Query: 822 VTAELNNRLIMPASDAEIAEAVNLLGGLKAPGPDGLNGLFFKNHWATIQDSVCYAIKEFF 881
VT+E+N+ LI ++ E+ AV + APGPDG LFF+ HW ++ + I FF
Sbjct: 415 VTSEMNHNLIQEVTELEVYNAVFSINKESAPGPDGFTALFFQQHWDLVKHQILTEIFGFF 474
Query: 882 ST*NL*AEINETIVALVPKVDSPESVVQFRPISCCNYILKVISRIMVTRLKDDLNLLISP 941
T L + N T + L+PK+ SP+ + RPIS C+ + K+IS+I+ RLK L ++S
Sbjct: 475 ETGVLPQDWNHTHICLIPKITSPQRMSDLRPISLCSVLYKIISKILTQRLKKHLPAIVST 534
Query: 942 NQSAFVGGRLIQDNITVSQEAFHLLQRGESRMKDYMAIKVDMSKTYDRLEWTFLEKTLLA 1001
QSAFV RLI DNI V+ E H L+ + K++MA K DMSK YDR+EW FLE + A
Sbjct: 535 TQSAFVPQRLISDNILVAHEMIHSLRTNDRISKEHMAFKTDMSKAYDRVEWPFLETMMTA 594
Query: 1002 YGFHPIWTARVLTLVKGATYKLKVNGFLSSTLTPGRGLRQGDPLSPYLFVLATDVLSFML 1061
GF+ W + ++ V +Y + +NG + P RG+RQGDPLSP LFVL T+ L +L
Sbjct: 595 LGFNNKWISWIMNCVTSVSYSVLINGQPYGHIIPTRGIRQGDPLSPALFVLCTEALIHIL 654
Query: 1062 TQAQRDGEISGFRFTPHSPPLTHLFFADDSLLFAEATVKEATSIIHILNLYNRASGQRIN 1121
+A++ G+I+G +F + HL FADD+LL +AT +E ++ L+ Y + SGQ IN
Sbjct: 655 NKAEQAGKITGIQFQDKKVSVNHLLFADDTLLMCKATKQECEELMQCLSQYGQLSGQMIN 714
Query: 1122 VAKSGLIFGRSASNRVKRDISNLLHMAIWDSPGQYLGLPAIWGRNKCHSLAWIEERVKEK 1181
+ KS + FG++ ++K I + +++ G+YLGLP +K +I+E+++ +
Sbjct: 715 LNKSAITFGKNVDIQIKDWIKSRSGISLEGGTGKYLGLPECLSGSKRDLFGFIKEKLQSR 774
Query: 1182 LEGWKETLLNQAGKEVLIKAIIQAIPLYAMAMVHFPKTFCNSLNSLVANFWWKGQGKDRG 1241
L GW L+Q GKEVL+K+I A+P+Y M+ PK C L +++ +FWW + R
Sbjct: 775 LTGWYAKTLSQGGKEVLLKSIALALPVYVMSCFKLPKNLCQKLTTVMMDFWWNSMQQKRK 834
Query: 1242 IHWRSWEKMTLSKDEGGMGFREFRMQNLAILAKQAWRVLTNPEALWVCVLKSVYFPTSDF 1301
IHW SW+++TL KD+GG GF++ + N A+LAKQAWRVL +L+ V +S YF SDF
Sbjct: 835 IHWLSWQRLTLPKDQGGFGFKDLQCFNQALLAKQAWRVLQEKGSLFSRVFQSRYFSNSDF 894
Query: 1302 LNASLGRNPSWMWRSLLAGRDFISRYIRWAVGGGLLIEVWGDNWLSSGEALIQPHNA--- 1358
L+A+ G PS+ WRS+L GR+ + + +R +G G VW D WL G +P N
Sbjct: 895 LSATRGSRPSYAWRSILFGRELLMQGLRTVIGNGQKTFVWTDKWLHDGSNR-RPLNRRRF 953
Query: 1359 --PDMKVSELISPHGEGWNSALVRSLFQPELALKVLQTPVSKLNQTDVLFWPHTPKGDYT 1416
D+KVS+LI P WN ++R LF P ++++ + D W H+ G Y+
Sbjct: 954 INVDLKVSQLIDPTSRNWNLNMLRDLF-PWKDVEIILKQRPLFFKEDSFCWLHSHNGLYS 1012
Query: 1417 VSSGFEIARSNSIKPQALSSRSHNIPELLWRTIWKSQLPQKVKVFLWKASHNSLAVKYNL 1476
V +G+E ++ L+ IW K+++FLWKA H ++ V+ L
Sbjct: 1013 VKTGYEFLSKQVHHRLYQEAKVKPSVNSLFDKIWNLHTAPKIRIFLWKALHGAIPVEDRL 1072
Query: 1477 WRKRILPSGQCPVCCEAQETVEHMFFVCPWTRAVWFGSSLQWVVSPQGLGSFDVWLLQKI 1536
+ I C +C ET+ H+ F CP R VW + L S + S + + I
Sbjct: 1073 RTRGIRSDDGCLMCDTENETINHILFECPLARQVWAITHLSSAGS-EFSNSVYTNMSRLI 1131
Query: 1537 TALQTISLDFNKDFSTLACILWSIWRGRNKAVFNAIRPDPTFAIQQVASTLSAIDLAKPV 1596
Q L + F + ILW +W+ RN +F + + T + +D A
Sbjct: 1132 DLTQQNDLPHHLRFVS-PWILWFLWKNRNALLFEG----------KGSITTTLVDKAYEA 1180
Query: 1597 TEKVISD----GNQNTNQRPTAWRPPFGNLLKINVDASWVSSVPQSAVGVLIRDKFSTLL 1652
+ S N + + T W PP LK N+ +W S ++RD +L
Sbjct: 1181 YHEWFSAQTHMQNDEKHLKITKWCPPLPGELKCNIGFAWSKQHHFSGASWVVRDSQGKVL 1240
Query: 1653 AGSHAKVYS-SSPLTAEASAIREGLSLAHNLGCPEIIMESDSKILIDACKS----ETLVG 1707
S SP +A+ + L + +I S + +I A L+G
Sbjct: 1241 LHSRRSFNEVHSPYSAKIRSWEWALESMTHHHFDRVIFASSTHEIIQALHKPHEWPLLLG 1300
Query: 1708 EASAIL 1713
+ S +L
Sbjct: 1301 DISELL 1306
>gb|AAD03565.2| putative non-LTR retroelement reverse transcriptase [Arabidopsis
thaliana] gi|25411819|pir||H84557 hypothetical protein
At2g17910 [imported] - Arabidopsis thaliana
Length = 1344
Score = 720 bits (1859), Expect = 0.0
Identities = 428/1300 (32%), Positives = 671/1300 (50%), Gaps = 36/1300 (2%)
Query: 429 PTIVFLMETRSKKENLEVIRRSLGFDYLFTVNPRGLSGGLALFWKREVHIQILHSSQNYI 488
P I+FLMET++ ++ + + LG+D++ TV P G SGGLA+FWK + I+ L++ +N +
Sbjct: 7 PDILFLMETKNSQDFVYKVFCWLGYDFIHTVEPEGRSGGLAIFWKSHLEIEFLYADKNLM 66
Query: 489 HTSIFANNSVSDWDCTFVYGDPSSQRRRFLWPQITALRFRDNTPWCLLGDFNEILFAHEK 548
+ + N V W + VYG P + R LW + ++ + WCL+GDFN+I EK
Sbjct: 67 DLQVSSRNKV--WFISCVYGLPVTHMRPKLWEHLNSIGLKRAEAWCLIGDFNDIRSNDEK 124
Query: 549 EGMRPQPPSVLQRFREFVHNSGLMDVDLKGSRFTWHSNPRDGFVTREKIDRVLTNWSWRN 608
G + PS Q F + N + ++ G+ FTW N D +V + K+DR N +W +
Sbjct: 125 LGGPRRSPSSFQCFEHMLLNCSMHELGSTGNSFTWGGNRNDQWV-QCKLDRCFGNPAWFS 183
Query: 609 IFPNASAMAYPQISSDHSPILLDLSPPT-WSKTPFKYEVFWDEHEQCSEVVAEGWLKPLH 667
IFPNA + SDH P+L+ + + F+Y+ D+ C EV+ W +
Sbjct: 184 IFPNAHQWFLEKFGSDHRPVLVKFTNDNELFRGQFRYDKRLDDDPYCIEVIHRSWNSAM- 242
Query: 668 NEDCWKDLENRIKSSKRTIWSWQRKTFKVAEKEIGRLKQELQSKQDRPNHLVDWNEVKNI 727
++ + I+ +R I W+ + A+ I RL+++L + ++ + W ++ I
Sbjct: 243 SQGTHSSFFSLIEC-RRAISVWKHSSDTNAQSRIKRLRKDLDA--EKSIQIPCWPRIEYI 299
Query: 728 KLEIDTLWRQEELFWGQRSRVKWA*YGDKNSKFFHASTLKRRNRNRIDRVCDAQGTWKEG 787
K ++ + EELFW Q+SR KW GDKN+ FFHA+ R +N + + D
Sbjct: 300 KDQLSLAYGDEELFWRQKSRQKWLAGGDKNTGFFHATVHSERLKNELSFLLDENDQEFTR 359
Query: 788 QTEVMHAFVSHYEEIFQSEGVNQIEDCLRGFPRKVTAELNNRLIMPASDAEIAEAVNLLG 847
++ S +E +F S + + L G KVT+E+N+ LI ++ E+ AV +
Sbjct: 360 NSDKGKIASSFFENLFTSTYILTHNNHLEGLQAKVTSEMNHNLIQEVTELEVYNAVFSIN 419
Query: 848 GLKAPGPDGLNGLFFKNHWATIQDSVCYAIKEFFST*NL*AEINETIVALVPKVDSPESV 907
APGPDG LFF+ HW ++ + I FF T L + N T + L+PK+ SP+ +
Sbjct: 420 KESAPGPDGFTALFFQQHWDLVKHQILTEIFGFFETGVLPQDWNHTHICLIPKITSPQRM 479
Query: 908 VQFRPISCCNYILKVISRIMVTRLKDDLNLLISPNQSAFVGGRLIQDNITVSQEAFHLLQ 967
RPIS C+ + K+IS+I+ RLK L ++S QSAFV RLI DNI V+ E H L+
Sbjct: 480 SDLRPISLCSVLYKIISKILTQRLKKHLPAIVSTTQSAFVPQRLISDNILVAHEMIHSLR 539
Query: 968 RGESRMKDYMAIKVDMSKTYDRLEWTFLEKTLLAYGFHPIWTARVLTLVKGATYKLKVNG 1027
+ K++MA K DMSK YDR+EW FLE + A GF+ W + ++ V +Y + +NG
Sbjct: 540 TNDRISKEHMAFKTDMSKAYDRVEWPFLETMMTALGFNNKWISWIMNCVTSVSYSVLING 599
Query: 1028 FLSSTLTPGRGLRQGDPLSPYLFVLATDVLSFMLTQAQRDGEISGFRFTPHSPPLTHLFF 1087
+ P RG+RQGDPLSP LFVL T+ L +L +A++ G+I+G +F + HL F
Sbjct: 600 QPYGHIIPTRGIRQGDPLSPALFVLCTEALIHILNKAEQAGKITGIQFQDKKVSVNHLLF 659
Query: 1088 ADDSLLFAEATVKEATSIIHILNLYNRASGQRINVAKSGLIFGRSASNRVKRDISNLLHM 1147
ADD+LL +AT +E ++ L+ Y + SGQ IN+ KS + FG++ ++K I + +
Sbjct: 660 ADDTLLMCKATKQECEELMQCLSQYGQLSGQMINLNKSAITFGKNVDIQIKDWIKSRSGI 719
Query: 1148 AIWDSPGQYLGLPAIWGRNKCHSLAWIEERVKEKLEGWKETLLNQAGKEVLIKAIIQAIP 1207
++ G+YLGLP +K +I+E+++ +L GW L+Q GKEVL+K+I A+P
Sbjct: 720 SLEGGTGKYLGLPECLSGSKRDLFGFIKEKLQSRLTGWYAKTLSQGGKEVLLKSIALALP 779
Query: 1208 LYAMAMVHFPKTFCNSLNSLVANFWWKGQGKDRGIHWRSWEKMTLSKDEGGMGFREFRMQ 1267
+Y M+ PK C L +++ +FWW + R IHW SW+++TL KD+GG GF++ +
Sbjct: 780 VYVMSCFKLPKNLCQKLTTVMMDFWWNSMQQKRKIHWLSWQRLTLPKDQGGFGFKDLQCF 839
Query: 1268 NLAILAKQAWRVLTNPEALWVCVLKSVYFPTSDFLNASLGRNPSWMWRSLLAGRDFISRY 1327
N A+LAKQAWRVL +L+ V +S YF SDFL+A+ G PS+ WRS+L GR+ + +
Sbjct: 840 NQALLAKQAWRVLQEKGSLFSRVFQSRYFSNSDFLSATRGSRPSYAWRSILFGRELLMQG 899
Query: 1328 IRWAVGGGLLIEVWGDNWLSSGEALIQPHNA-----PDMKVSELISPHGEGWNSALVRSL 1382
+R +G G VW D WL G +P N D+KVS+LI P WN ++R L
Sbjct: 900 LRTVIGNGQKTFVWTDKWLHDGSNR-RPLNRRRFINVDLKVSQLIDPTSRNWNLNMLRDL 958
Query: 1383 FQPELALKVLQTPVSKLNQTDVLFWPHTPKGDYTVSSGFEIARSNSIKPQALSSRSHNIP 1442
F P ++++ + D W H+ G Y+V +G+E ++
Sbjct: 959 F-PWKDVEIILKQRPLFFKEDSFCWLHSHNGLYSVKTGYEFLSKQVHHRLYQEAKVKPSV 1017
Query: 1443 ELLWRTIWKSQLPQKVKVFLWKASHNSLAVKYNLWRKRILPSGQCPVCCEAQETVEHMFF 1502
L+ IW K+++FLWKA H ++ V+ L + I C +C ET+ H+ F
Sbjct: 1018 NSLFDKIWNLHTAPKIRIFLWKALHGAIPVEDRLRTRGIRSDDGCLMCDTENETINHILF 1077
Query: 1503 VCPWTRAVWFGSSLQWVVSPQGLGSFDVWLLQKITALQTISLDFNKDFSTLACILWSIWR 1562
CP R VW + L S + S + + I Q L + F + ILW +W+
Sbjct: 1078 ECPLARQVWAITHLSSAGS-EFSNSVYTNMSRLIDLTQQNDLPHHLRFVS-PWILWFLWK 1135
Query: 1563 GRNKAVFNAIRPDPTFAIQQVASTLSAIDLAKPVTEKVISD----GNQNTNQRPTAWRPP 1618
RN +F + + T + +D A + S N + + T W PP
Sbjct: 1136 NRNALLFEG----------KGSITTTLVDKAYEAYHEWFSAQTHMQNDEKHLKITKWCPP 1185
Query: 1619 FGNLLKINVDASWVSSVPQSAVGVLIRDKFSTLLAGSHAKVYS-SSPLTAEASAIREGLS 1677
LK N+ +W S ++RD +L S SP +A+ + L
Sbjct: 1186 LPGELKCNIGFAWSKQHHFSGASWVVRDSQGKVLLHSRRSFNEVHSPYSAKIRSWEWALE 1245
Query: 1678 LAHNLGCPEIIMESDSKILIDACKS----ETLVGEASAIL 1713
+ +I S + +I A L+G+ S +L
Sbjct: 1246 SMTHHHFDRVIFASSTHEIIQALHKPHEWPLLLGDISELL 1285
>gb|AAD21778.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
thaliana] gi|25410938|pir||G84429 hypothetical protein
At2g01840 [imported] - Arabidopsis thaliana
Length = 1715
Score = 693 bits (1789), Expect = 0.0
Identities = 417/1381 (30%), Positives = 690/1381 (49%), Gaps = 61/1381 (4%)
Query: 383 HYYQQG*GGGPNHAPPITMMILSWNCRGVAATPTGRELRTLCSKNKPTIVFLMETRSKKE 442
H ++ G G +P M + WNC+G+ T R L + ++FL+ET+ +
Sbjct: 348 HNFESRGGAGTTTSP---MRVGFWNCQGLGQPLTVRRLEEVQRVYFLDMLFLIETKQQDN 404
Query: 443 NLEVIRRSLGFDYLFTVNPRGLSGGLALFWKREVHIQILHSSQNYIHTSIFANNSVSDWD 502
+ +GF+ + ++PRGLSGGL ++WK+ + IQ++ + + N
Sbjct: 405 YTRDLGVKMGFEDMCIISPRGLSGGLVVYWKKHLSIQVISHDVRLVDLYVEYKNFNFYLS 464
Query: 503 CTFVYGDPSSQRRRFLWPQITALRFRDNTPWCLLGDFNEILFAHEKEGMRPQPPSVLQRF 562
C +YG P R LW ++ + + PW + GDFNEIL +EK+G R + LQ F
Sbjct: 465 C--IYGHPIPSERHHLWEKLQRVSAHRSGPWMMCGDFNEILNLNEKKGGRRRSIGSLQNF 522
Query: 563 REFVHNSGLMDVDLKGSRFTWHSNPRDGFVTREKIDRVLTNWSWRNIFPNASAMAYPQIS 622
++ + D+ KG+ ++W R +DRV N W+ FP P
Sbjct: 523 TNMINCCNMKDLKSKGNPYSWVGK-RQNETIESCLDRVFINSDWQASFPAFETEFLPIAG 581
Query: 623 SDHSPILLDLSPPTWSKT-PFKYEVFWDEHEQCSEVVAEGWLKPLHNEDCWKDLENRIKS 681
SDH+P+++D++ +K F+Y+ + E + V GW + D ++
Sbjct: 582 SDHAPVIIDIAEEVCTKRGQFRYDRRHFQFEDFVDSVQRGWNRG--RSDSHGGYYEKLHC 639
Query: 682 SKRTIWSWQRKTFKVAEKEIGRLKQELQSKQDRPNHLVDWNEVKNIKLEIDTLWRQEELF 741
++ + W+R+T ++I LK + + + +H + + ++ +++ +R EEL+
Sbjct: 640 CRQELAKWKRRTKTNTAEKIETLKYRVDAAER--DHTLPHQTILRLRQDLNQAYRDEELY 697
Query: 742 WGQRSRVKWA*YGDKNSKFFHASTLKRRNRNRIDRVCDAQGTWKEGQTEVMHAFVSHYEE 801
W +SR +W GD+N+ FF+AST R++RNRI + DAQG + +++ +
Sbjct: 698 WHLKSRNRWMLLGDRNTMFFYASTKLRKSRNRIKAITDAQGIENFRDDTIGKVAENYFAD 757
Query: 802 IFQSEGVNQIEDCLRGFPRKVTAELNNRLIMPASDAEIAEAVNLLGGLKAPGPDGLNGLF 861
+F + + E+ + G KVT ++N+ L+ +D E+ +AV +G +APG DG F
Sbjct: 758 LFTTTQTSDWEEIISGIAPKVTEQMNHELLQSVTDQEVRDAVFAIGADRAPGFDGFTAAF 817
Query: 862 FKNHWATIQDSVCYAIKEFFST*NL*AEINETIVALVPKVDSPESVVQFRPISCCNYILK 921
+ + W I + VC ++ FF + + +IN+T + L+PK+ P+ + +RPIS C K
Sbjct: 818 YHHLWDLIGNDVCLMVRHFFESDVMDNQINQTQICLIPKIIDPKHMSDYRPISLCTASYK 877
Query: 922 VISRIMVTRLKDDLNLLISPNQSAFVGGRLIQDNITVSQEAFHLLQRGESRMKDYMAIKV 981
+IS+I++ RLK L +IS +Q+AFV G+ I DN+ V+ E H L+ Y+A+K
Sbjct: 878 IISKILIKRLKQCLGDVISDSQAAFVPGQNISDNVLVAHELLHSLKSRRECQSGYVAVKT 937
Query: 982 DMSKTYDRLEWTFLEKTLLAYGFHPIWTARVLTLVKGATYKLKVNGFLSSTLTPGRGLRQ 1041
D+SK YDR+EW FLEK ++ GF P W ++T V +Y++ +NG + P RG+RQ
Sbjct: 938 DISKAYDRVEWNFLEKVMIQLGFAPRWVKWIMTCVTSVSYEVLINGSPYGKIFPSRGIRQ 997
Query: 1042 GDPLSPYLFVLATDVLSFMLTQAQRDGEISGFRFTPHSPPLTHLFFADDSLLFAEATVKE 1101
GDPLSPYLF+ +VLS ML +A+ + +I G + T ++HL FADDSL F A+ +
Sbjct: 998 GDPLSPYLFLFCAEVLSNMLRKAEVNKQIHGMKITKDCLAISHLLFADDSLFFCRASNQN 1057
Query: 1102 ATSIIHILNLYNRASGQRINVAKSGLIFGRSASNRVKRDISNLLHMAIWDSPGQYLGLPA 1161
+ I Y ASGQ+IN AKS +IFG+ ++ + LL + G+YLGLP
Sbjct: 1058 IEQLALIFKKYEEASGQKINYAKSSIIFGQKIPTMRRQRLHRLLGIDNVRGGGKYLGLPE 1117
Query: 1162 IWGRNKCHSLAWIEERVKEKLEGWKETLLNQAGKEVLIKAIIQAIPLYAMAMVHFPKTFC 1221
GR K +I +VKE+ EGW L+ AGKE++IKAI A+P+Y+M P C
Sbjct: 1118 QLGRRKVELFEYIVTKVKERTEGWAYNYLSPAGKEIVIKAIAMALPVYSMNCFLLPTLIC 1177
Query: 1222 NSLNSLVANFWWKGQGKDRGIHWRSWEKMTLSKDEGGMGFREFRMQNLAILAKQAWRVLT 1281
N +NSL+ FWW GK+ +EG +GF++ N A+LAKQAWR+LT
Sbjct: 1178 NEINSLITAFWW---GKE---------------NEGDLGFKDLHQFNRALLAKQAWRILT 1219
Query: 1282 NPEALWVCVLKSVYFPTSDFLNASLGRNPSWMWRSLLAGRDFISRYIRWAVGGGLLIEVW 1341
NP++L + K +Y+P + +L A+ G + S+ W S+ G+ + + +R +G G ++W
Sbjct: 1220 NPQSLLARLYKGLYYPNTTYLRANKGGHASYGWNSIQEGKLLLQQGLRVRLGDGQTTKIW 1279
Query: 1342 GDNWLSSGEALIQPHNAP----DMKVSELISPHGEGWNSALVRSLFQPELALKVLQTPVS 1397
D WL + +P P DMKV++L + W+ + + PE +S
Sbjct: 1280 EDPWLPTLPP--RPARGPILDEDMKVADLWRENKREWDPVIFEGVLNPEDQQLAKSLYLS 1337
Query: 1398 KLNQTDVLFWPHTPKGDYTVSSGFEIA-RSNSIKPQALSSRSHNIPELLWRTIWKSQLPQ 1456
D W +T YTV SG+ +A N + + ++ ++P L + IW+ ++
Sbjct: 1338 NYAARDSYKWAYTRNTQYTVRSGYWVATHVNLTEEEIINPLEGDVP--LKQEIWRLKITP 1395
Query: 1457 KVKVFLWKASHNSLAVKYNLWRKRILPSGQCPVCCEAQETVEHMFFVCPWTRAVWFGSSL 1516
K+K F+W+ +L+ L + I C CC A ET+ H+ F C + + VW ++
Sbjct: 1396 KIKHFIWRCLSGALSTTTQLRNRNIPADPTCQRCCNADETINHIIFTCSYAQVVWRSANF 1455
Query: 1517 QWVVSPQGLGSFDVWLLQKITALQTISLDFNKDFSTLAC-------ILWSIWRGRNKAVF 1569
GS + + + L K+ + I+W +W+ RN+ +F
Sbjct: 1456 S--------GSNRLCFTDNLEENIRLILQGKKNQNLPILNGLMPFWIMWRLWKSRNEYLF 1507
Query: 1570 NAIRPDPTFAIQQVASTLSAIDLAKPVTEKVISDGNQNTNQRPTA----WRPPFGNLLKI 1625
+ P + + Q A + + V + IS +N RP + W P LK
Sbjct: 1508 QQLDRFP-WKVAQKAEQEATEWVETMVNDTAISHNTAQSNDRPLSRSKQWSSPPEGFLKC 1566
Query: 1626 NVDASWVSSVPQSAVGVLIRDKFSTLLAGSHAKVYSS-SPLTAEASAIREGLSLAHNLGC 1684
N D+ +V ++ G ++RD +L AK+ S S L AEA L + G
Sbjct: 1567 NFDSGYVQGRDYTSTGWILRDCNGRVLHSGCAKLQQSYSALQAEALGFLHALQMVWIRGY 1626
Query: 1685 PEIIMESDSKILIDACKSETLVGEASAILQDI-FYLKRLFYRCDFAWANRERNNSAHLVA 1743
+ E D+ L + +L DI F++ +L + + NRERN +A +
Sbjct: 1627 CYVWFEGDNLELTNLINKTEDHHLLETLLYDIRFWMTKLPF-SSIGYVNRERNLAADKLT 1685
Query: 1744 K 1744
K
Sbjct: 1686 K 1686
>pir||S65812 RNA-directed DNA polymerase (EC 2.7.7.49) (clone DW15) - Arabidopsis
thaliana retrotransposon Ta11-1 gi|976278|gb|AAA75254.1|
reverse transcriptase
Length = 1333
Score = 683 bits (1762), Expect = 0.0
Identities = 409/1265 (32%), Positives = 651/1265 (51%), Gaps = 22/1265 (1%)
Query: 401 MMILSWNCRGVAATP--TGRELRTLCSKNKPTIVFLMETRSKKENLEVIRRSLGFDYLFT 458
M ++SWNC+G+ + T L + + P ++FLMET++ + ++ LG++ +FT
Sbjct: 1 MSLVSWNCQGLGWSQDLTIPRLMEMRLSHFPEVLFLMETKNCSNVVVDLQEWLGYERVFT 60
Query: 459 VNPRGLSGGLALFWKREVHIQILHSSQNYIHTSIFANNSVSDWDCTFVYGDPSSQRRRFL 518
VNP GLSGGLALFWK+ V I I ++ +N I I + C VYG+P+ + +
Sbjct: 61 VNPIGLSGGLALFWKKGVDIVIKYADKNLIDFQIQFGSHEFYVSC--VYGNPAFSDKHLV 118
Query: 519 WPQITALRFRDNTPWCLLGDFNEILFAHEKEGMRPQPPSVLQRFREFVHNSGLMDVDLKG 578
W +IT + PWC+LGDFN IL EK G + S F + + + ++++ G
Sbjct: 119 WEKITRIGINRKEPWCMLGDFNPILHNGEKRGGPRRGDSSFLPFTDMLDSCDMLELPSIG 178
Query: 579 SRFTWHSNPRDGFVTREKIDRVLTNWSWRNIFPNASAMAYPQISSDHSPILLDLSPPTWS 638
+ FTW + ++ + ++DR N +W FP ++ + SDH P+L+ L+
Sbjct: 179 NPFTWGGKTNEMWI-QSRLDRCFGNKNWFRFFPISNQEFLDKRGSDHRPVLVRLTKTKEE 237
Query: 639 -KTPFKYEVFWDEHEQCSEVVAEGWLKPLHNEDCWKDLENRIKSSKRTIWSWQRKTFKVA 697
+ F+++ E + + W NE+ + +++K + + W+++ +
Sbjct: 238 YRGNFRFDKRLFNQPNVKETIVQAWNGSQRNENLL--VLDKLKHCRSALSRWKKENNINS 295
Query: 698 EKEIGRLKQELQSKQDRPNHLVDWNEVKNIKLEIDTLWRQEELFWGQRSRVKWA*YGDKN 757
I + + L+ +Q D V ++K ++ EE+FW Q+SR KW GDKN
Sbjct: 296 STRITQARAALELEQSSGFPRADL--VFSLKNDLCKANHDEEVFWSQKSRAKWMHSGDKN 353
Query: 758 SKFFHASTLKRRNRNRIDRVCDAQGTWKEGQTEVMHAFVSHYEEIFQSEGVNQIEDCLRG 817
+ FFHAS R + ID++CD G + + + +++ ++F+S + D
Sbjct: 354 TSFFHASVKDNRGKQHIDQLCDVNGLFHKDEMNKGAIAEAYFSDLFKSTDPSSFVDLFED 413
Query: 818 FPRKVTAELNNRLIMPASDAEIAEAVNLLGGLKAPGPDGLNGLFFKNHWATIQDSVCYAI 877
+ +VT +NN LI S EI EAV + APG DG G FF+ +W+ I V I
Sbjct: 414 YQPRVTESMNNTLIAAVSKNEIREAVFAIRSSSAPGVDGFTGFFFQKYWSIICLQVTKEI 473
Query: 878 KEFFST*NL*AEINETIVALVPKVDSPESVVQFRPISCCNYILKVISRIMVTRLKDDLNL 937
+ FF N T + L+PK P+ + RPIS C+ + K+IS+IMV RL+ L
Sbjct: 474 QNFFLLGYFPKSWNFTHLCLLPKKKKPDKMTDLRPISLCSVLYKIISKIMVRRLQPFLPD 533
Query: 938 LISPNQSAFVGGRLIQDNITVSQEAFHLLQRGESRMKDYMAIKVDMSKTYDRLEWTFLEK 997
L+SPNQSAFV RLI DNI ++ E H L+ +S K ++AIK +MSK +DR+EW ++
Sbjct: 534 LVSPNQSAFVAERLIFDNILIAHEVVHGLRTHKSVSKGFIAIKSNMSKAFDRVEWNYVRA 593
Query: 998 TLLAYGFHPIWTARVLTLVKGATYKLKVNGFLSSTLTPGRGLRQGDPLSPYLFVLATDVL 1057
L A GFH W ++ ++ +Y + +N + P RGLRQGDPLSP+LFVL ++ L
Sbjct: 594 LLDALGFHQKWVGWIMFMISSVSYSVLINDKAFGNIVPSRGLRQGDPLSPFLFVLCSEGL 653
Query: 1058 SFMLTQAQRDGEISGFRFTPHSPPLTHLFFADDSLLFAEATVKEATSIIHILNLYNRASG 1117
+ ++ +A+R G +SG RF+ + P + HL FADDSL +A +E T I I +Y +G
Sbjct: 654 THLMNRAERQGLLSGIRFSENGPAIHHLLFADDSLFMCKAVKEEVTVIKSIFKVYGDVTG 713
Query: 1118 QRINVAKSGLIFGRSASNRVKRDISNLLHMAIWDSPGQYLGLPAIWGRNKCHSLAWIEER 1177
QRIN KS + G K I L + YLGLP + +K L +I++R
Sbjct: 714 QRINYDKSSITLGALVDEDCKVWIQAELGITNEGGASTYLGLPECFSGSKVQLLDYIKDR 773
Query: 1178 VKEKLEGWKETLLNQAGKEVLIKAIIQAIPLYAMAMVHFPKTFCNSLNSLVANFWWKGQG 1237
+K +L GW L+ GKE L+KA A+ YAM+ KT C ++ S +++FWW
Sbjct: 774 LKTRLSGWFARTLSMGGKETLLKAFALALLFYAMSCFKLTKTTCVNMTSAMSDFWWNALE 833
Query: 1238 KDRGIHWRSWEKMTLSKDEGGMGFREFRMQNLAILAKQAWRVLTNPEALWVCVLKSVYFP 1297
R HW S EKM LSK+ GG+GFR+ N A+LAKQAWR+L P +L+ KS Y+
Sbjct: 834 HKRKTHWVSCEKMCLSKENGGLGFRDIESFNQALLAKQAWRLLQFPNSLFARFFKSRYYD 893
Query: 1298 TSDFLNASLGRNPSWMWRSLLAGRDFISRYIRWAVGGGLLIEVWGDNWLSSGEAL--IQP 1355
DFL+A L PS+ WRS+L GRD + + R VG G VW D W+ + +Q
Sbjct: 894 EEDFLDAELKATPSYAWRSILHGRDLLIKGFRKKVGNGSSTSVWMDPWIYDNDPRLPLQK 953
Query: 1356 HNAP--DMKVSELISPHGEGWNSALVRSLFQP-ELALKVLQTPVSKLNQTDVLFWPHTPK 1412
H + D++V +LI+ + LF P ++ + V + PV ++ D W H+
Sbjct: 954 HFSVNLDLRVHDLINVEDRCRRRDRLEELFYPADIEIIVKRNPV--VSMDDFWVWLHSKS 1011
Query: 1413 GDYTVSSGFEIARSNSIKPQAL-SSRSHNIPELLWRTIWKSQLPQKVKVFLWKASHNSLA 1471
G+Y+V SG+ +A + KP+ + +R L IW + K+K+FLW+ ++L
Sbjct: 1012 GEYSVKSGYWLAFQTN-KPELIREARVQPSTNGLKEKIWSTLTSPKIKLFLWRILSSALP 1070
Query: 1472 VKYNLWRKRILPSGQCPVCCEAQETVEHMFFVCPWTRAVWFGSSLQWVVSPQGLGSFDVW 1531
V Y + R+ + +C VC E E++ H+ F C R VW S + S G + ++
Sbjct: 1071 VAYQIIRRGMPIDPRCQVCGEEGESINHVLFTCSLARQVWALSGVP--TSQFGFQNSSIF 1128
Query: 1532 L-LQKITALQTISLDFNKDFSTLACILWSIWRGRNKAVFNAIRPDPTFAIQQVASTLSAI 1590
+Q + L+ L + + +LW +W+ R+K F P +I+++ +
Sbjct: 1129 ANIQYLLELKGKGLIPEQIKKSWPWVLWRLWKNRDKLFFEGTIFSPLKSIEKIRDDVQEW 1188
Query: 1591 DLAKPVTEKVISDGNQNTNQRPTAWRPPFGNLLKINVDASWVSSVPQSAVGVLIRDKFST 1650
LA+ + V + + P++W PP +K N+ W ++RD
Sbjct: 1189 FLAQALVASVDAGETVCSAPCPSSWEPPPLGWVKCNISGVWSGKKRVCGGAWVLRDDHGK 1248
Query: 1651 LLAGS 1655
+L S
Sbjct: 1249 VLLHS 1253
>gb|AAD20714.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
thaliana] gi|25412331|pir||G84649 hypothetical protein
At2g25550 [imported] - Arabidopsis thaliana
Length = 1750
Score = 679 bits (1753), Expect = 0.0
Identities = 409/1323 (30%), Positives = 656/1323 (48%), Gaps = 21/1323 (1%)
Query: 431 IVFLMETRSKKENLEVIRRSLGFDYLFTVNPRGLSGGLALFWKREVHIQILHSSQNYIHT 490
I+FL+ET ++ + + + LGF + T P G SGGLAL WK V + ++ + I +
Sbjct: 412 ILFLVETLNQCDKVCKLAYDLGFPNVITQPPNGRSGGLALMWKNNVSLSLISQDERLIDS 471
Query: 491 SIFANNSVSDWDCTFVYGDPSSQRRRFLWPQITALRFRDNTPWCLLGDFNEILFAHEKEG 550
+ NN C VYG P+ R LW + + N W L+GDFNEIL EK G
Sbjct: 472 HVTFNNKSFYLSC--VYGHPTQSERHQLWQTLEHISDNRNAEWLLVGDFNEILSNAEKIG 529
Query: 551 MRPQPPSVLQRFREFVHNSGLMDVDLKGSRFTWHSNPRDGFVTREKIDRVLTNWSWRNIF 610
+ + FR V + + D+ KG RF+W R + +DRV N +W F
Sbjct: 530 GPMREEWTFRNFRNMVSHCDIEDMRSKGDRFSWVGE-RHTHTVKCCLDRVFINSAWTATF 588
Query: 611 PNASAMAYPQISSDHSPILLDLSP--PTWSKTPFKYEVFWDEHEQCSEVVAEGWLKPLHN 668
P A SDH P+L+ + P SK F+++ + +V W ++
Sbjct: 589 PYAEIEFLDFTGSDHKPVLVHFNESFPRRSKL-FRFDNRLIDIPTFKRIVQTSWRTNRNS 647
Query: 669 EDCWKDLENRIKSSKRTIWSWQRKTFKVAEKEIGRLKQELQSKQDRPNHLVDWNEVKNIK 728
+ RI S ++ + + + +E+ I +L+ L + VD + ++
Sbjct: 648 RST--PITERISSCRQAMARLKHASNLNSEQRIKKLQSSLNRAMESTRR-VDRQLIPQLQ 704
Query: 729 LEIDTLWRQEELFWGQRSRVKWA*YGDKNSKFFHASTLKRRNRNRIDRVCDAQGTWKEGQ 788
+ + EE++W Q+SR +W GD+N+ +FHA T R ++NR++ + D QG G
Sbjct: 705 ESLAKAFSDEEIYWKQKSRNQWMKEGDQNTGYFHACTKTRYSQNRVNTIMDDQGRMFTGD 764
Query: 789 TEVMHAFVSHYEEIFQSEGVNQIEDCLRGFPRKVTAELNNRLIMPASDAEIAEAVNLLGG 848
E+ + + IF + G+ F VT +N L SD EI +A+ +G
Sbjct: 765 KEIGNHAQDFFTNIFSTNGIKVSPIDFADFKSTVTNTVNLDLTKEFSDTEIYDAICQIGD 824
Query: 849 LKAPGPDGLNGLFFKNHWATIQDSVCYAIKEFFST*NL*AEINETIVALVPKVDSPESVV 908
KAPGPDGL F+KN W + V +K+FF T + IN T + ++PK+ +P ++
Sbjct: 825 DKAPGPDGLTARFYKNCWDIVGYDVILEVKKFFETSFMKPSINHTNICMIPKITNPTTLS 884
Query: 909 QFRPISCCNYILKVISRIMVTRLKDDLNLLISPNQSAFVGGRLIQDNITVSQEAFHLLQR 968
+RPI+ CN + KVIS+ +V RLK LN ++S +Q+AF+ GR+I DN+ ++ E H L+
Sbjct: 885 DYRPIALCNVLYKVISKCLVNRLKSHLNSIVSDSQAAFIPGRIINDNVMIAHEVMHSLKV 944
Query: 969 GESRMKDYMAIKVDMSKTYDRLEWTFLEKTLLAYGFHPIWTARVLTLVKGATYKLKVNGF 1028
+ K YMA+K D+SK YDR+EW FLE T+ +GF W ++ VK Y + +NG
Sbjct: 945 RKRVSKTYMAVKTDVSKAYDRVEWDFLETTMRLFGFCNKWIGWIMAAVKSVHYSVLINGS 1004
Query: 1029 LSSTLTPGRGLRQGDPLSPYLFVLATDVLSFMLTQAQRDGEISGFRFTPHSPPLTHLFFA 1088
+TP RG+RQGDPLSPYLF+L D+LS ++ G++ G R +P +THL FA
Sbjct: 1005 PHGYITPTRGIRQGDPLSPYLFILCGDILSHLINGRASSGDLRGVRIGNGAPAITHLQFA 1064
Query: 1089 DDSLLFAEATVKEATSIIHILNLYNRASGQRINVAKSGLIFGRSASNRVKRDISNLLHMA 1148
DDSL F +A V+ ++ + ++Y SGQ+INV KS + FG + + +L +
Sbjct: 1065 DDSLFFCQANVRNCQALKDVFDVYEYYSGQKINVQKSMITFGSRVYGSTQSRLKQILEIP 1124
Query: 1149 IWDSPGQYLGLPAIWGRNKCHSLAWIEERVKEKLEGWKETLLNQAGKEVLIKAIIQAIPL 1208
G+YLGLP +GR K +I +RVK++ W L+ AGKE+++K++ A+P+
Sbjct: 1125 NQGGGGKYLGLPEQFGRKKKEMFEYIIDRVKKRTSTWSARFLSPAGKEIMLKSVALAMPV 1184
Query: 1209 YAMAMVHFPKTFCNSLNSLVANFWWKGQGKDRGIHWRSWEKMTLSKDEGGMGFREFRMQN 1268
YAM+ PK + + SL+ NFWW+ RGI W +W+++ SK EGG+GFR+ N
Sbjct: 1185 YAMSCFKLPKGIVSEIESLLMNFWWEKASNQRGIPWVAWKRLQYSKKEGGLGFRDLAKFN 1244
Query: 1269 LAILAKQAWRVLTNPEALWVCVLKSVYFPTSDFLNASLGRNPSWMWRSLLAGRDFISRYI 1328
A+LAKQAWR++ P +L+ V+K+ YF L+A + + S+ W SLL G + +
Sbjct: 1245 DALLAKQAWRLIQYPNSLFARVMKARYFKDVSILDAKVRKQQSYGWASLLDGIALLKKGT 1304
Query: 1329 RWAVGGGLLIEVWGDNWLSS--GEALIQPHNAPDMKVSELISPHGE--GWNSALVRSLFQ 1384
R +G G I + DN + S L +M ++ L G W+ + +
Sbjct: 1305 RHLIGDGQNIRIGLDNIVDSHPPRPLNTEETYKEMTINNLFERKGSYYFWDDSKISQFVD 1364
Query: 1385 PELALKVLQTPVSKLNQTDVLFWPHTPKGDYTVSSGFEIARSNSIKPQALSSRSHNIPEL 1444
+ + ++K + D + W + G+YTV SG+ + + + H +L
Sbjct: 1365 QSDHGFIHRIYLAKSKKPDKIIWNYNTTGEYTVRSGYWLLTHDPSTNIPAINPPHGSIDL 1424
Query: 1445 LWRTIWKSQLPQKVKVFLWKASHNSLAVKYNLWRKRILPSGQCPVCCEAQETVEHMFFVC 1504
R IW + K+K FLW+A +LA L + + CP C E++ H F C
Sbjct: 1425 KTR-IWNLPIMPKLKHFLWRALSQALATTERLTTRGMRIDPSCPRCHRENESINHALFTC 1483
Query: 1505 PWTRAVWFGSSLQWVVSPQGLGSFDVWLLQKITALQ-TISLDFNKDFSTLACILWSIWRG 1563
P+ W S + + F+ + + +Q T DF+K ++W IW+
Sbjct: 1484 PFATMAWRLSDSSLIRNQLMSNDFEENISNILNFVQDTTMSDFHKLLP--VWLIWRIWKA 1541
Query: 1564 RNKAVFNAIRPDPTFAIQQV-ASTLSAIDLAKPVTEKVISDGNQNTNQRPTAWRPPFGNL 1622
RN VFN R P+ + A T ++ + + K + + WR P
Sbjct: 1542 RNNVVFNKFRESPSKTVLSAKAETHDWLNATQ--SHKKTPSPTRQIAENKIEWRNPPATY 1599
Query: 1623 LKINVDASWVSSVPQSAVGVLIRDKFSTLLA-GSHAKVYSSSPLTAEASAIREGLSLAHN 1681
+K N DA + ++ G +IR+ + T ++ GS ++S+PL AE A+ L
Sbjct: 1600 VKCNFDAGFDVQKLEATGGWIIRNHYGTPISWGSMKLAHTSNPLEAETKALLAALQQTWI 1659
Query: 1682 LGCPEIIMESDSKILIDACKSETLVGEASAILQDIFYLKRLFYRCDFAWANRERNNSAHL 1741
G ++ ME D + LI+ + + L+DI + F F + ++ N AH+
Sbjct: 1660 RGYTQVFMEGDCQTLINLINGISFHSSLANHLEDISFWANKFASIQFGFIRKKGNKLAHV 1719
Query: 1742 VAK 1744
+AK
Sbjct: 1720 LAK 1722
>gb|AAD24831.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
thaliana] gi|25408166|pir||G84721 hypothetical protein
At2g31520 [imported] - Arabidopsis thaliana
Length = 1524
Score = 677 bits (1747), Expect = 0.0
Identities = 413/1341 (30%), Positives = 660/1341 (48%), Gaps = 28/1341 (2%)
Query: 420 LRTLCSKNKPT-------IVFLMETRSKKENLEVIRRSLGFDYLFTVNPRGLSGGLALFW 472
L LC K + T I +ET ++ + + + LGF + T P G SGGLAL W
Sbjct: 168 LSQLCKKGRKTESAGSCSIHDGLETLNQCDKVCKLAYDLGFPNVITQPPNGRSGGLALMW 227
Query: 473 KREVHIQILHSSQNYIHTSIFANNSVSDWDCTFVYGDPSSQRRRFLWPQITALRFRDNTP 532
K V + ++ + I + + NN C VYG P+ R LW + + N
Sbjct: 228 KNNVSLSLISQDERLIDSHVTFNNKSFYLSC--VYGHPTQSERHQLWQTLEHISDNRNAE 285
Query: 533 WCLLGDFNEILFAHEKEGMRPQPPSVLQRFREFVHNSGLMDVDLKGSRFTWHSNPRDGFV 592
W L+GDFNEIL EK G + + FR V + + D+ KG RF+W R
Sbjct: 286 WLLVGDFNEILSNAEKIGGPMREEWTFRNFRNMVSHCDIEDMRSKGDRFSWVGE-RHTHT 344
Query: 593 TREKIDRVLTNWSWRNIFPNASAMAYPQISSDHSPILLDLSP--PTWSKTPFKYEVFWDE 650
+ +DRV N +W FP A SDH P+L+ + P SK F+++ +
Sbjct: 345 VKCCLDRVFINSAWTATFPYAETEFLDFTGSDHKPVLVHFNESFPRRSKL-FRFDNRLID 403
Query: 651 HEQCSEVVAEGWLKPLHNEDCWKDLENRIKSSKRTIWSWQRKTFKVAEKEIGRLKQELQS 710
+V W ++ + RI S ++ + + + +E+ I +L+ L
Sbjct: 404 IPTFKRIVQTSWRTNRNSRST--PITERISSCRQAMARLKHASNLNSEQRIKKLQSSLNR 461
Query: 711 KQDRPNHLVDWNEVKNIKLEIDTLWRQEELFWGQRSRVKWA*YGDKNSKFFHASTLKRRN 770
+ VD + ++ + + EE++W Q+SR +W GD+N+ +FHA T R +
Sbjct: 462 AMESTRR-VDRQLIPQLQESLAKAFSDEEIYWKQKSRNQWMKEGDQNTGYFHACTKTRYS 520
Query: 771 RNRIDRVCDAQGTWKEGQTEVMHAFVSHYEEIFQSEGVNQIEDCLRGFPRKVTAELNNRL 830
+NR++ + D QG G E+ + + IF + G+ F VT +N L
Sbjct: 521 QNRVNTIMDDQGRMFTGDKEIGNHAQDFFTNIFSTNGIKVSPIDFADFKSTVTNTVNLDL 580
Query: 831 IMPASDAEIAEAVNLLGGLKAPGPDGLNGLFFKNHWATIQDSVCYAIKEFFST*NL*AEI 890
SD EI +A+ +G KAPGPDGL F+KN W + V +K+FF T + I
Sbjct: 581 TKEFSDTEIYDAICQIGDDKAPGPDGLTARFYKNCWDIVGYDVILEVKKFFETSFMKPSI 640
Query: 891 NETIVALVPKVDSPESVVQFRPISCCNYILKVISRIMVTRLKDDLNLLISPNQSAFVGGR 950
N T + ++PK+ +P ++ +RPI+ CN + KVIS+ +V RLK LN ++S +Q+AF+ GR
Sbjct: 641 NHTNICMIPKITNPTTLSDYRPIALCNVLYKVISKCLVNRLKSHLNSIVSDSQAAFIPGR 700
Query: 951 LIQDNITVSQEAFHLLQRGESRMKDYMAIKVDMSKTYDRLEWTFLEKTLLAYGFHPIWTA 1010
+I DN+ ++ E H L+ + K YMA+K D+SK YDR+EW FLE T+ +GF W
Sbjct: 701 IINDNVMIAHEVMHSLKVRKRVSKTYMAVKTDVSKAYDRVEWDFLETTMRLFGFCNKWIG 760
Query: 1011 RVLTLVKGATYKLKVNGFLSSTLTPGRGLRQGDPLSPYLFVLATDVLSFMLTQAQRDGEI 1070
++ VK Y + +NG +TP RG+RQGDPLSPYLF+L D+LS ++ G++
Sbjct: 761 WIMAAVKSVHYSVLINGSPHGYITPTRGIRQGDPLSPYLFILCGDILSHLINGRASSGDL 820
Query: 1071 SGFRFTPHSPPLTHLFFADDSLLFAEATVKEATSIIHILNLYNRASGQRINVAKSGLIFG 1130
G R +P +THL FADDSL F +A V+ ++ + ++Y SGQ+INV KS + FG
Sbjct: 821 RGVRIGNGAPAITHLQFADDSLFFCQANVRNCQALKDVFDVYEYYSGQKINVQKSMITFG 880
Query: 1131 RSASNRVKRDISNLLHMAIWDSPGQYLGLPAIWGRNKCHSLAWIEERVKEKLEGWKETLL 1190
+ + +L + G+YLGLP +GR K +I +RVK++ W L
Sbjct: 881 SRVYGSTQSKLKQILEIPNQGGGGKYLGLPEQFGRKKKEMFEYIIDRVKKRTSTWSARFL 940
Query: 1191 NQAGKEVLIKAIIQAIPLYAMAMVHFPKTFCNSLNSLVANFWWKGQGKDRGIHWRSWEKM 1250
+ AGKE+++K++ A+P+YAM+ PK + + SL+ NFWW+ RGI W +W+++
Sbjct: 941 SPAGKEIMLKSVALAMPVYAMSCFKLPKGIVSEIESLLMNFWWEKASNQRGIPWVAWKRL 1000
Query: 1251 TLSKDEGGMGFREFRMQNLAILAKQAWRVLTNPEALWVCVLKSVYFPTSDFLNASLGRNP 1310
SK EGG+GFR+ N A+LAKQAWR++ P +L+ V+K+ YF L+A + +
Sbjct: 1001 QYSKKEGGLGFRDLAKFNDALLAKQAWRLIQYPNSLFARVMKARYFKDVSILDAKVRKQQ 1060
Query: 1311 SWMWRSLLAGRDFISRYIRWAVGGGLLIEVWGDNWLSS--GEALIQPHNAPDMKVSELIS 1368
S+ W SLL G + + R +G G I + DN + S L +M ++ L
Sbjct: 1061 SYGWASLLDGIALLKKGTRHLIGDGQNIRIGLDNIVDSHPPRPLNTEETYKEMTINNLFE 1120
Query: 1369 PHGE--GWNSALVRSLFQPELALKVLQTPVSKLNQTDVLFWPHTPKGDYTVSSGFEIARS 1426
G W+ + + + + ++K + D + W + G+YTV SG+ +
Sbjct: 1121 RKGSYYFWDDSKISQFVDQSDHGFIHRIYLAKSKKPDKIIWNYNTTGEYTVRSGYWLLTH 1180
Query: 1427 NSIKPQALSSRSHNIPELLWRTIWKSQLPQKVKVFLWKASHNSLAVKYNLWRKRILPSGQ 1486
+ + H +L R IW + K+K FLW+A +LA L + +
Sbjct: 1181 DPSTNIPAINPPHGSIDLKTR-IWNLPIMPKLKHFLWRALSQALATTERLTTRGMRIDPI 1239
Query: 1487 CPVCCEAQETVEHMFFVCPWTRAVWFGSSLQWVVSPQGLGSFDVWLLQKITALQ-TISLD 1545
CP C E++ H F CP+ W+ S + + F+ + + +Q T D
Sbjct: 1240 CPRCHRENESINHALFTCPFATMAWWLSDSSLIRNQLMSNDFEENISNILNFVQDTTMSD 1299
Query: 1546 FNKDFSTLACILWSIWRGRNKAVFNAIRPDPTFAIQQV-ASTLSAIDLAKPVTEKVISDG 1604
F+K ++W IW+ RN VFN R P+ + A T ++ + + K
Sbjct: 1300 FHKLLP--VWLIWRIWKARNNVVFNKFRESPSKTVLSAKAETHDWLNATQ--SHKKTPSP 1355
Query: 1605 NQNTNQRPTAWRPPFGNLLKINVDASWVSSVPQSAVGVLIRDKFSTLLA-GSHAKVYSSS 1663
+ + WR P +K N DA + ++ G +IR+ + T ++ GS ++S+
Sbjct: 1356 TRQIAENKIEWRNPPATYVKCNFDAGFDVQKLEATGGWIIRNHYGTPISWGSMKLAHTSN 1415
Query: 1664 PLTAEASAIREGLSLAHNLGCPEIIMESDSKILIDACKSETLVGEASAILQDIFYLKRLF 1723
PL AE A+ L G ++ ME D + LI+ + + L+DI + F
Sbjct: 1416 PLEAETKALLAALQQTWIRGYTQVFMEGDCQTLINLINGISFHSSLANHLEDISFWANKF 1475
Query: 1724 YRCDFAWANRERNNSAHLVAK 1744
F + R+ N AH++AK
Sbjct: 1476 ASIQFGFIRRKGNKLAHVLAK 1496
>gb|AAC33961.1| contains similarity to reverse trancriptase (Pfam: rvt.hmm, score:
42.57) [Arabidopsis thaliana] gi|7486711|pir||T01893
hypothetical protein F8M12.22 - Arabidopsis thaliana
Length = 1662
Score = 665 bits (1716), Expect = 0.0
Identities = 405/1337 (30%), Positives = 647/1337 (48%), Gaps = 98/1337 (7%)
Query: 410 GVAATPTGRELRTLCSKNKPTIVFLMETRSKKENLEVIRRSLGFDYLFTVNPRGLSGGLA 469
G+ T +L LC K ++FL+ET +K E + + LGF + T P+G SGGLA
Sbjct: 391 GIGVPLTQSQLSNLCKVFKFDVLFLIETLNKCEVISNLASVLGFPNVITQPPQGHSGGLA 450
Query: 470 LFWKREVHIQILHSSQNYIHTSIFANNSVSDWDCTFVYGDPSSQRRRFLWPQITALRFRD 529
L WK V + L+ +I I NN ++ + VYG P R LW L
Sbjct: 451 LLWKDSVRLSNLYQDDRHIDVHISINNI--NFYLSRVYGHPCQSERHSLWTHFENLSKTR 508
Query: 530 NTPWCLLGDFNEILFAHEKEGMRPQPPSVLQRFREFVHNSGLMDVDLKGSRFTWHSNPRD 589
N PW L+GDFNEIL +EK G + + FR V L D+ G RF+W R
Sbjct: 509 NDPWILIGDFNEILSNNEKIGGPQRDEWTFRGFRNMVSTCDLKDIRSIGDRFSWVGE-RH 567
Query: 590 GFVTREKIDRVLTNWSWRNIFPNASAMAYPQISSDHSPILLDLSPPTWSKT-PFKYEVFW 648
+ +DR N +FP A SDH P+ L L K PF+++
Sbjct: 568 SHTVKCCLDRAFINSEGAFLFPFAELEFLEFTGSDHKPLFLSLEKTETRKMRPFRFDKRL 627
Query: 649 DEHEQCSEVVAEGWLKPLHNEDCWKDLENRIKSSKRTIWSWQRKTFKVAEKEIGRLKQEL 708
E V GW K ++ + K L +++++ ++ + + K+ + I +L+ L
Sbjct: 628 LEVPHFKTYVKAGWNKAINGQR--KHLPDQVRTCRQAMAKLKHKSNLNSRIRINQLQAAL 685
Query: 709 QSKQDRPNHLVDWNEVKNIKLEIDTLWRQEELFWGQRSRVKWA*YGDKNSKFFHASTLKR 768
N + + +I+ E+ +R EE +W Q+SR +W GD+N++FFHA T R
Sbjct: 686 DKAMSSVNR-TERRTISHIQRELTVAYRDEERYWQQKSRNQWMKEGDRNTEFFHACTKTR 744
Query: 769 RNRNRIDRVCDAQGTWKEGQTEVMHAFVSHYEEIFQSEGVNQIEDCLRGFPRKVTAELNN 828
+ NR+ + D +G G E+ + ++++S G GF VT ++N+
Sbjct: 745 FSVNRLVTIKDEEGMIYRGDKEIGVHAQEFFTKVYESNGRPVSIIDFAGFKPIVTEQIND 804
Query: 829 RLIMPASDAEIAEAVNLLGGLKAPGPDGLNGLFFKNHWATIQDSVCYAIKEFFST*NL*A 888
L SD EI A+ +G KAPGPDGL F+K+ W + V +K FF T +
Sbjct: 805 DLTKDLSDLEIYNAICHIGDDKAPGPDGLTARFYKSCWEIVGPDVIKEVKIFFRTSYMKQ 864
Query: 889 EINETIVALVPKVDSPESVVQFRPISCCNYILKVISRIMVTRLKDDLNLLISPNQSAFVG 948
IN T + ++PK+ +PE++ +RPI+ CN + K+IS+ +V RLK L+ ++S +Q+AF+
Sbjct: 865 SINHTNICMIPKITNPETLSDYRPIALCNVLYKIISKCLVERLKGHLDAIVSDSQAAFIP 924
Query: 949 GRLIQDNITVSQEAFHLLQRGESRMKDYMAIKVDMSKTYDRLEWTFLEKTLLAYGFHPIW 1008
GRL+ DN+ ++ E H L+ + + YMA+K D+SK YDR+EW FLE T+ +GF W
Sbjct: 925 GRLVNDNVMIAHEMMHSLKTRKRVSQSYMAVKTDVSKAYDRVEWNFLETTMRLFGFSETW 984
Query: 1009 TARVLTLVKGATYKLKVNGFLSSTLTPGRGLRQGDPLSPYLFVLATDVLSFMLTQAQRDG 1068
++ VK Y + VNG T+ P RG+RQGDPLSPYLF+L D+L+ ++ +G
Sbjct: 985 IKWIMGAVKSVNYSVLVNGIPHGTIQPQRGIRQGDPLSPYLFILCADILNHLIKNRVAEG 1044
Query: 1069 EISGFRFTPHSPPLTHLFFADDSLLFAEATVKEATSIIHILNLYNRASGQRINVAKSGLI 1128
+I G R P +THL FADDSL F ++ V+ ++ + ++Y SGQ+IN++KS +
Sbjct: 1045 DIRGIRIGNGVPGVTHLQFADDSLFFCQSNVRNCQALKDVFDVYEYYSGQKINMSKSMIT 1104
Query: 1129 FGRSASNRVKRDISNLLHMAIWDSPGQYLGLPAIWGRNKCHSLAWIEERVKEKLEGWKET 1188
FG + + N+L + G+YLGLP +GR K +I ERVK++ W
Sbjct: 1105 FGSRVHGTTQNRLKNILGIQSHGGGGKYLGLPEQFGRKKRDMFNYIIERVKKRTSSWSAK 1164
Query: 1189 LLNQAGKEVLIKAIIQAIPLYAMAMVHFPKTFCNSLNSLVANFWWKGQGKDRGIHWRSWE 1248
L+ AGKE+++K++ ++P+YAM+ P + + +L+ NFWW+ K R I W +W+
Sbjct: 1165 YLSPAGKEIMLKSVAMSMPVYAMSCFKLPLNIVSEIEALLMNFWWEKNAKKREIPWIAWK 1224
Query: 1249 KMTLSKDEGGMGFREFRMQNLAILAKQAWRVLTNPEALWVCVLKSVYFPTSDFLNASLGR 1308
++ SK EGG+GFR+ N A+LAKQ WR++ NP +L+ ++K+ YF L+A R
Sbjct: 1225 RLQYSKKEGGLGFRDLAKFNDALLAKQVWRMINNPNSLFARIMKARYFREDSILDAKRQR 1284
Query: 1309 NPSWMWRSLLAGRDFISRYIRWAVGGGLLIEVWGDNWLSSGEALIQPHNAPDMKVSELIS 1368
S+ W S+LAG D I + R+ VG G +G
Sbjct: 1285 YQSYGWTSMLAGLDVIKKGSRFIVGDG-----------KTGSY----------------- 1316
Query: 1369 PHGEGWNSALVRSLFQPELALKVLQTPVSKLNQTDVLFWPHTPKGDYTVSSGFEIARSNS 1428
WN+ L+ L P+ V+ +S++ D L W ++ GDY
Sbjct: 1317 ---RYWNAHLISQLVSPDDHRFVMNHHLSRIVHQDKLVWNYSSSGDY------------- 1360
Query: 1429 IKPQALSSRSHNIPELLWRTIWKSQLPQKVKVFLWKASHNSLAVKYNLWRKRILPSGQCP 1488
T+WK + K+K LW+ +L + L + + CP
Sbjct: 1361 -------------------TLWKLPIIPKIKYMLWRTISKALPTRSRLLTRGMDIDPHCP 1401
Query: 1489 VCCEAQETVEHMFFVCPWTRAVWFGSSLQWVVSPQGLGSFDVWLLQKITALQTISLDFNK 1548
C +ET+ H+ F CP+ ++W S+ W+ + + I + +L+ +
Sbjct: 1402 RCPTEEETINHVLFTCPYAASIWGLSNFPWLPGHTFSQDTEENISFLINSFSNNTLNTEQ 1461
Query: 1549 DFSTLACILWSIWRGRNKAVFNAIRPDPTFAIQQVASTLS--AIDLAKPVTEKVISDGNQ 1606
+ ++W +W+ RN VFN + + Q + ++ + + V++ +
Sbjct: 1462 RLAPF-WLIWRLWKARNNLVFNKFSESCSRVVTQTEAEVNEWLQSVNRREDASVLTRSSH 1520
Query: 1607 NTNQRPTAWRPPFGNLLKINVDASWVSSVPQSAVGVLIRDKFSTLLAGSHAKVYSSSPLT 1666
N R W+ P L+K N DA + + QS G +I + + L+A A V
Sbjct: 1521 RANVR---WKKPVFPLVKCNFDAGFTGNNTQSTGGWIIPETKALLIAMQQAWV------- 1570
Query: 1667 AEASAIREGLSLAHNLGCPEIIMESDSKILIDACKSETLVGEASAILQDIFYLKRLFYRC 1726
G + E D +ILI A E +++L+D+ + F
Sbjct: 1571 ---------------RGYKCVQFEGDCEILIKAINGAISRCEITSLLRDVDFWASRFSTV 1615
Query: 1727 DFAWANRERNNSAHLVA 1743
F + NR NN+AHL+A
Sbjct: 1616 VFTFTNRLCNNTAHLLA 1632
>gb|AAQ19327.1| bZIP-like protein [Oryza sativa (japonica cultivar-group)]
Length = 2367
Score = 664 bits (1712), Expect = 0.0
Identities = 404/1316 (30%), Positives = 657/1316 (49%), Gaps = 64/1316 (4%)
Query: 442 ENLEVIRRSLGFDYLFTVNPRGLSGGLALFWKREVHIQILHSSQNYIHTSIFANNSVSDW 501
E + +R LG V+ G+SGGLAL+W V + + ++ YI + + W
Sbjct: 771 EKMSRLRGRLGLRGFTGVSSEGMSGGLALYWDESVSVDVKDINKRYIDAYVQLSPEEPQW 830
Query: 502 DCTFVYGDPSSQRRRFLWPQITALRFRDNTPWCLLGDFNEILFAHEKEGMRPQPPSVLQR 561
TFVYG+P + R +W + + + PW ++GDFNE ++ E P+ +Q
Sbjct: 831 HVTFVYGEPRVENRHRMWSLLRTIHQSSSLPWAVIGDFNETMWQFEHFSRTPRGEPQMQD 890
Query: 562 FREFVHNSGLMDVDLKGSRFTWHSNPRDGFVT-REKIDRVLTNWSWRNIFPNASAMAYPQ 620
FR+ + + L D+ KG T+ N R+G+ + ++DRV+ + WR+I+ A +
Sbjct: 891 FRDVLQDCELHDLGFKGVPHTY-DNKREGWRNVKVRLDRVVADDKWRDIYSTAQVVHLVS 949
Query: 621 ISSDHSPILLDL---SPPTWSKTPFKYEVFWDEHEQCSEVVAEGWLKPLHNEDCWKDLEN 677
SDH PILL+L P + YE+ W+ + ++V+ E W+ D D+
Sbjct: 950 PCSDHCPILLNLVVKDPHQLRQKCLHYEIVWEREPEATQVIEEAWVVAGEKADLG-DINK 1008
Query: 678 RIKSSKRTIWSWQRKTFKVAEKEIGRLKQEL----QSKQDRPNHLVDWNEVKNIKLEIDT 733
+ + SW R K +E+ + +++L +S DR ++N ++
Sbjct: 1009 ALAKVMTALRSWSRAKVKNVGRELEKARKKLAELIESNADR-------TVIRNATDHMNE 1061
Query: 734 LWRQEELFWGQRSRVKWA*YGDKNSKFFHASTLKRRNRNRIDRVCDAQGTWKEGQTEVMH 793
L +EE+ W QRSRV W D+N+KFFH+ + R +N+I ++ DA T ++
Sbjct: 1062 LLYREEMLWLQRSRVNWLKDEDRNTKFFHSRAVWRAKKNKISKLRDANETVHSSTMKLES 1121
Query: 794 AFVSHYEEIFQSEGVNQIEDCLRGFPRKVTAELNNRLIMPASDAEIAEAVNLLGGLKAPG 853
++++++ ++ E R KVT +N +L ++ EI++A+ +G LK+PG
Sbjct: 1122 MATEYFQDVYTADPNLNPETVTRLIQEKVTDIMNEKLCEDFTEDEISQAIFQIGPLKSPG 1181
Query: 854 PDGLNGLFFKNHWATIQDSVCYAIKEFFST*NL*AEINETIVALVPKVDSPESVVQFRPI 913
PDG F++ +W TI+ + A++ FF T + +N+T + L+PK + P + FRPI
Sbjct: 1182 PDGFPARFYQRNWGTIKADIIGAVRRFFQTGLMPEGVNDTAIVLIPKKEQPVDLRDFRPI 1241
Query: 914 SCCNYILKVISRIMVTRLKDDLNLLISPNQSAFVGGRLIQDNITVSQEAFHLLQRGESRM 973
S CN + KV+S+ +V RL+ L+ L+S QSAFV GR+I DN ++ E FH +Q+ +
Sbjct: 1242 SLCNVVYKVVSKCLVNRLRPILDDLVSVEQSAFVQGRMITDNALLAFECFHAMQKNKKAN 1301
Query: 974 KDYMAIKVDMSKTYDRLEWTFLEKTLLAYGFHPIWTARVLTLVKGATYKLKVNGFLSSTL 1033
A K+D+SK YDR++W FLE + GF W ++ V Y +K NG L +
Sbjct: 1302 HAACAYKLDLSKAYDRVDWRFLEMAMNKLGFARRWVNWIMKCVTSVRYMVKFNGTLLQSF 1361
Query: 1034 TPGRGLRQGDPLSPYLFVLATDVLSFMLTQAQRDGEISGFRFTPHSPPLTHLFFADDSLL 1093
P RGLRQGDPL P+LF+ D LS +L + ++ F+ +P ++HL FADD+LL
Sbjct: 1362 APTRGLRQGDPLLPFLFLFVADGLSLLLKEKVAQNSLTPFKVCRAAPGISHLLFADDTLL 1421
Query: 1094 FAEATVKEATSIIHILNLYNRASGQRINVAKSGLIFGRSASNRVKRDISNLLHMAIWDSP 1153
F +A +EA + +L+ Y +GQ IN AK ++ G +++ V IS +L +
Sbjct: 1422 FFKAHQREAEVVKEVLSSYAMGTGQLINPAKCSILMGGASTPAVSEAISEILQVERDRFE 1481
Query: 1154 GQYLGLPAIWGRNKCHSLAWIEERVKEKLEGWKETLLNQAGKEVLIKAIIQAIPLYAMAM 1213
+YLG P GR ++ ++ +++ W E L+ GKEVLIKA+IQAIP+Y M +
Sbjct: 1482 DRYLGFPTPEGRMHKGRFQSLQAKIWKRVIQWGENHLSTGGKEVLIKAVIQAIPVYVMGI 1541
Query: 1214 VHFPKTFCNSLNSLVANFWWKGQGKDRGIHWRSWEKMTLSKDEGGMGFREFRMQNLAILA 1273
P++ + L L NFWW R HW++W+ +T K GG+GFR++R+ N A+LA
Sbjct: 1542 FKLPESVIDDLTKLTKNFWWDSMNGQRKTHWKAWDSLTKPKSLGGLGFRDYRLFNQALLA 1601
Query: 1274 KQAWRVLTNPEALWVCVLKSVYFPTSDFLNASLGRNPSWMWRSLLAGRDFISRYIRWAVG 1333
+QAWR++T P++L VLK+ YFP ++ S G N S WRS+ G D + + I W VG
Sbjct: 1602 RQAWRLITYPDSLCARVLKAKYFPHGSLIDTSFGSNSSPAWRSIEYGLDLLKKGIIWRVG 1661
Query: 1334 GGLLIEVWGDNWL---SSGEALIQPHNAPDMKVSELISPHGEGWNSALVRSLFQPELALK 1390
G I +W D+WL S + N VS+LI+ G W+ + F A
Sbjct: 1662 NGNSIRIWRDSWLPRDHSRRPITGKANCRLKWVSDLITEDG-SWDVPKIHQYFHNLDAEV 1720
Query: 1391 VLQTPVSKLNQTDVLFWPHTPKGDYTVSSGFEIARSNSIKPQALSSRSHNIPELLWRTIW 1450
+L +S ++ D + W G ++V S + +A ++ SS ++NI + W IW
Sbjct: 1721 ILNICISSRSEEDFIAWHPDKNGMFSVRSAYRLAAQLVNIEESSSSGTNNINK-AWEMIW 1779
Query: 1451 KSQLPQKVKVFLWKASHNSLAVKYNLWRKRILPSGQCPVCCEAQETVEHMFFVCPWTRAV 1510
K ++PQKVK+F W+ + N LA N ++++ S C +C E H C +
Sbjct: 1780 KCKVPQKVKIFAWRVASNCLATMVNKKKRKLEQSDMCQICDRENEDDAHALCRCIQASQL 1839
Query: 1511 WF----GSSLQWVVSPQGLGSFDVWL---LQKITALQTISLDFNKDFSTLACILWSIWRG 1563
W S+ + LG F WL L+KI + + LW W
Sbjct: 1840 WSCMHKSGSVSVDIKASVLGRF--WLFDCLEKIPEYEQ---------AMFLMTLWRNWYV 1888
Query: 1564 RNKAVFNAIRPDPTFAIQQVASTLSAIDL--------------AKPVTEKVISDGNQN-- 1607
RN+ + P PT Q+ S +DL K V V G
Sbjct: 1889 RNELIHGKSAP-PTETSQRFIQ--SYVDLLFQIRQAPQADLVKGKHVVRTVPLKGGPKYR 1945
Query: 1608 -TNQRPTAWRPPFGNLLKINVDASWVSSVPQSAVGVLIRDKFSTLLAGSHAKV-YSSSPL 1665
N W P +K+NVD S+ +S + +G+++R+ ++ S + ++PL
Sbjct: 1946 VLNNHQPCWERPKDGWMKLNVDGSFDASSGKGGLGMILRNSAGDIIFTSCKPLERCNNPL 2005
Query: 1666 TAEASAIREGLSLAHNLGCPEIIMESDSKILIDACKSETLVGEASAILQDIFYLKR 1721
+E A EGL LA + I +E+D ++ + +G ++L +I + R
Sbjct: 2006 ESELRACVEGLKLAIHWTLLPIQVETDCASVVQLLQG---IGRDFSVLANIIHEAR 2058
>gb|AAV32224.1| hypothetical protein [Oryza sativa (japonica cultivar-group)]
gi|45267888|gb|AAS55787.1| hypothetical protein [Oryza
sativa (japonica cultivar-group)]
Length = 1936
Score = 663 bits (1711), Expect = 0.0
Identities = 358/1118 (32%), Positives = 585/1118 (52%), Gaps = 14/1118 (1%)
Query: 401 MMILSWNCRGVAATPTGRELRTLCSKNKPTIVFLMETRSKKENLEVIRRSLGFDYLFTVN 460
M L+WNCRG+ T T ++LR L K +VFL ETR E + +RR L F V+
Sbjct: 636 MSCLAWNCRGLGNTATVQDLRALIQKAGSQLVFLCETRQSVEKMSRLRRKLAFRGFVGVS 695
Query: 461 PRGLSGGLALFWKREVHIQILHSSQNYIHTSIFANNSVSDWDCTFVYGDPSSQRRRFLWP 520
G SGGLAL+W V + + ++ YI + + W TFVYG+P + R +W
Sbjct: 696 SEGKSGGLALYWDESVSVDVKDINKRYIDAYVRLSPDEPQWHITFVYGEPRVENRHRMWS 755
Query: 521 QITALRFRDNTPWCLLGDFNEILFAHEKEGMRPQPPSVLQRFREFVHNSGLMDVDLKGSR 580
+ +R PW ++GDFNE L+ E P+ + +Q FR+ +++ L D+ KG
Sbjct: 756 LLRTIRQSSALPWMVIGDFNETLWQFEHFSKNPRCETQMQNFRDALYDCDLQDLGFKGVP 815
Query: 581 FTWHSNPRDGFVT-REKIDRVLTNWSWRNIFPNASAMAYPQISSDHSPILLDLSPPTWSK 639
T+ N RDG+ + ++DR + + WR++FP A SDHSPILL+ ++
Sbjct: 816 HTY-DNRRDGWRNVKVRLDRAVADDKWRDLFPEAQVSHLVSPCSDHSPILLEFIVKDTTR 874
Query: 640 TPFK---YEVFWDEHEQCSEVVAEGWLKPLHNEDCWKDLENRIKSSKRTIWSWQRKTFKV 696
K YE+ W+ + +V+ E W+ D D+ + + SW + K
Sbjct: 875 PRQKCLHYEIVWEREPESVQVIEEAWINAGVKTDLG-DINIALGRVMSALRSWSKTKVKN 933
Query: 697 AEKEIGRLKQELQSKQDRPNHLVDWNEVKNIKLEIDTLWRQEELFWGQRSRVKWA*YGDK 756
KE+ + +++L+ D + ++ ++ + +EE+ W QRSRV W GD+
Sbjct: 934 VGKELEKARKKLE---DLIASNAARSSIRQATDHMNEMLYREEMLWLQRSRVNWLKEGDR 990
Query: 757 NSKFFHASTLKRRNRNRIDRVCDAQGTWKEGQTEVMHAFVSHYEEIFQSEGVNQIEDCLR 816
N++FFH+ + R +N+I ++ D G + + +++ +++++ E R
Sbjct: 991 NTRFFHSRAVWRAKKNKISKLRDENGAIHSTTSVLETMATEYFQGVYKADPSLNPESVTR 1050
Query: 817 GFPRKVTAELNNRLIMPASDAEIAEAVNLLGGLKAPGPDGLNGLFFKNHWATIQDSVCYA 876
F KVT +N +L + EIA+A+ +G LK+P PDG F++ +W T++ + A
Sbjct: 1051 LFQEKVTDAMNEKLCQEFKEEEIAQAIFQIGPLKSPRPDGFPARFYQRNWGTLKSDIILA 1110
Query: 877 IKEFFST*NL*AEINETIVALVPKVDSPESVVQFRPISCCNYILKVISRIMVTRLKDDLN 936
++ FF + + +N+T + L+PK D P + +RPIS CN + KV+S+ +V RL+ L+
Sbjct: 1111 VRNFFQSGLMPKGVNDTAIVLIPKKDQPIDLKDYRPISLCNVVYKVVSKCLVNRLRPILD 1170
Query: 937 LLISPNQSAFVGGRLIQDNITVSQEAFHLLQRGESRMKDYMAIKVDMSKTYDRLEWTFLE 996
L+S QSAF+ GR+I DN ++ E FH +Q+ + A K+D+SK YDR++W FLE
Sbjct: 1171 DLVSKEQSAFIQGRMITDNALLAFECFHSIQKNKKANSAACAYKLDLSKAYDRVDWRFLE 1230
Query: 997 KTLLAYGFHPIWTARVLTLVKGATYKLKVNGFLSSTLTPGRGLRQGDPLSPYLFVLATDV 1056
L GF W + ++ V Y +K NG L + P RGLRQG+PLSP+LF+ D
Sbjct: 1231 LALNKLGFAHRWVSWIMLCVTTVRYSVKFNGTLLRSFAPTRGLRQGEPLSPFLFLFVADG 1290
Query: 1057 LSFMLTQAQRDGEISGFRFTPHSPPLTHLFFADDSLLFAEATVKEATSIIHILNLYNRAS 1116
LS +L + ++ + +P +++L FADD+LLF +A KEA + +L Y + +
Sbjct: 1291 LSLLLKEKVAQNSLTPLKICRQAPGISYLLFADDTLLFFKAEKKEAEVVKEVLTNYAQGT 1350
Query: 1117 GQRINVAKSGLIFGRSASNRVKRDISNLLHMAIWDSPGQYLGLPAIWGRNKCHSLAWIEE 1176
GQ IN AK ++FG ++ + V DI N L + + +YLG P GR ++
Sbjct: 1351 GQLINPAKCSILFGEASPSSVSEDIRNTLQVERDNFEDRYLGFPTPEGRMHKGRFQSLQA 1410
Query: 1177 RVKEKLEGWKETLLNQAGKEVLIKAIIQAIPLYAMAMVHFPKTFCNSLNSLVANFWWKGQ 1236
++ +++ W E L+ GKE+LIKA+IQAIP+Y M + FP + + L + NFWW
Sbjct: 1411 KIAKRVIQWGENFLSSGGKEILIKAVIQAIPVYVMGLFKFPDSVYDELTKMTRNFWWGAD 1470
Query: 1237 GKDRGIHWRSWEKMTLSKDEGGMGFREFRMQNLAILAKQAWRVLTNPEALWVCVLKSVYF 1296
R HWR+W+ +T +K GG+GFR++++ N A+L +QAWR++ P +L VLK+ YF
Sbjct: 1471 NGRRRTHWRAWDSLTKAKINGGLGFRDYKLFNQALLTRQAWRLIEFPNSLCAQVLKAKYF 1530
Query: 1297 PTSDFLNASLGRNPSWMWRSLLAGRDFISRYIRWAVGGGLLIEVWGDNWLS---SGEALI 1353
P + + N S W + G D + + I W +G G + +W D W+ S +
Sbjct: 1531 PHGSLTDTTFSANASPTWHGIEYGLDLLKKGIIWRIGNGNSVRIWRDPWIPRDLSRRPVS 1590
Query: 1354 QPHNAPDMKVSELISPHGEGWNSALVRSLFQPELALKVLQTPVSKLNQTDVLFWPHTPKG 1413
N VS+LI+ G W+SA + F A + + +S + D + W G
Sbjct: 1591 SKANCRLKWVSDLIAEDGT-WDSAKINQYFLKIDADIIQKICISARLEEDFIAWHPDKTG 1649
Query: 1414 DYTVSSGFEIARSNSIKPQALSSRSHNIPELLWRTIWKSQLPQKVKVFLWKASHNSLAVK 1473
++V S +++A + SS S + + W IWK +PQKV++F W+ + NSLA
Sbjct: 1650 RFSVRSAYKLALQLADMNNCSSSSSSRLNK-SWELIWKCNVPQKVRIFAWRVASNSLATM 1708
Query: 1474 YNLWRKRILPSGQCPVCCEAQETVEHMFFVCPWTRAVW 1511
N ++ + C +C +E H C ++W
Sbjct: 1709 ENKKKRNLERFDVCGICDREKEDAGHALCRCVHANSLW 1746
Score = 39.7 bits (91), Expect = 0.94
Identities = 26/84 (30%), Positives = 43/84 (50%), Gaps = 1/84 (1%)
Query: 1615 WRPPFGNLLKINVDASWVSSVPQSAVGVLIRDKFSTLLAGSHAKVYS-SSPLTAEASAIR 1673
W P +K+NVD S+ + + +G+++R+ ++ S + S S PL AE A
Sbjct: 1777 WERPRNGWMKLNVDGSFDINSEKGGIGMILRNCLGNVIFSSCRSLDSCSGPLEAELHACV 1836
Query: 1674 EGLSLAHNLGCPEIIMESDSKILI 1697
EGL LA + I +E+D +I
Sbjct: 1837 EGLHLALHWTLLPIQVETDCSSVI 1860
>gb|AAF97969.1| F21J9.30 [Arabidopsis thaliana]
Length = 1270
Score = 652 bits (1681), Expect = 0.0
Identities = 380/1146 (33%), Positives = 607/1146 (52%), Gaps = 56/1146 (4%)
Query: 441 KENLEVIRRSLGFDYLFTVNPRGLSGGLALFWKREVHIQILHSSQNYIHTSIFANNSVSD 500
+++L I+ L +D ++TV P G GGLAL WK V + + +N + + +
Sbjct: 4 RDDLVDIQSWLEYDQVYTVEPVGKCGGLALLWKSSVQVDLKFVDKNLMDAQV--QFGAVN 61
Query: 501 WDCTFVYGDPSSQRRRFLWPQITALRFRDNTPWCLLGDFNEILFAHEKEGMRPQPPSVLQ 560
+ + VYGDP +R W +I+ + WC+ GDFN+IL EK G + +
Sbjct: 62 FCVSCVYGDPDRSKRSQAWERISRIGVGRRDKWCMFGDFNDILHNGEKNGGPRRSDLDCK 121
Query: 561 RFREFVHNSGLMDVDLKGSRFTWHSNPRDGFVTREKIDRVLTNWSWRNIFPNASAMAYPQ 620
F E + L+++ G+ FTW D ++ + ++DR N W FP ++
Sbjct: 122 AFNEMIKGCDLVEMPAHGNGFTWAGRRGDHWI-QCRLDRAFGNKEWFCFFPVSNQTFLDF 180
Query: 621 ISSDHSPILLDLSPPTWS-KTPFKYEVFWDEHEQCSEVVAEGWLKPLHNEDCWKDLENRI 679
SDH P+L+ L S + F+++ + E E + W + H + + +R+
Sbjct: 181 RGSDHRPVLIKLMSSQDSYRGQFRFDKRFLFKEDVKEAIIRTWSRGKHGTNI--SVADRL 238
Query: 680 KSSKRTIWSWQRKTFKVAEKEIGRLKQELQSKQDRPNHLVDWNEVKNIKLEIDTLWRQEE 739
++ ++++ SW+++ + +I +L+ L+ +Q + + V +K ++ +R+EE
Sbjct: 239 RACRKSLSSWKKQNNLNSLDKINQLEAALEKEQSLVWPI--FQRVSVLKKDLAKAYREEE 296
Query: 740 LFWGQRSRVKWA*YGDKNSKFFHASTLKRRNRNRIDRVCDAQGTWKEGQTEVMHAFVSHY 799
+W Q+SR KW G++NSK+FHA+ + R R RI+++ D G + + +++
Sbjct: 297 AYWKQKSRQKWLRSGNRNSKYFHAAVKQNRQRKRIEKLKDVNGNMQTSEAAKGEVAAAYF 356
Query: 800 EEIFQSEGVNQIEDCLRGFPRKVTAELNNRLIMPASDAEIAEAVNLLGGLKAPGPDGLNG 859
+F+S + D G +V+ +N L+ S EI EAV + APGPDG++
Sbjct: 357 GNLFKSSNPSGFTDWFSGLVPRVSEVMNESLVGEVSAQEIKEAVFSIKPASAPGPDGMSA 416
Query: 860 LFFKNHWATIQDSVCYAIKEFFST*NL*AEINETIVALVPKVDSPESVVQFRPISCCNYI 919
LFF+++W+T+ + V +K+FF+ + AE N T + L+PK P +V RPIS C+ +
Sbjct: 417 LFFQHYWSTVGNQVTSEVKKFFADGIMPAEWNYTHLCLIPKTQHPTEMVDLRPISLCSVL 476
Query: 920 LKVISRIMVTRLKDDLNLLISPNQSAFVGGRLIQDNITVSQEAFHLLQRGESRMKDYMAI 979
K+IS+IM RL+ L ++S QSAFV RLI DNI V+ E H L+ ++MA+
Sbjct: 477 YKIISKIMAKRLQPWLPEIVSDTQSAFVSERLITDNILVAHELVHSLKVHPRISSEFMAV 536
Query: 980 KVDMSKTYDRLEWTFLEKTLLAYGFHPIWTARVLTLVKGATYKLKVNGFLSSTLTPGRGL 1039
K DMSK YDR+EW++L LL+ GFH W ++ V TY + +N + RGL
Sbjct: 537 KSDMSKAYDRVEWSYLRSLLLSLGFHLKWVNWIMVCVSSVTYSVLINDCPFGLIILQRGL 596
Query: 1040 RQGDPLSPYLFVLATDVLSFMLTQAQRDGEISGFRFTPHSPPLTHLFFADDSLLFAEATV 1099
RQGDPLSP+LFVL T+ L+ +L +AQ +G + G +F+ + P + HL FADDSL +A+
Sbjct: 597 RQGDPLSPFLFVLCTEGLTHLLNKAQWEGALEGIQFSENGPMVHHLLFADDSLFLCKASR 656
Query: 1100 KEATSIIHILNLYNRASGQRINVAKSGLIFGRSASNRVKRDISNLLHMAIWDSPGQYLGL 1159
+++ + IL +Y A+GQ IN+ KS + FG ++K I L + G YLGL
Sbjct: 657 EQSLVLQKILKVYGNATGQTINLNKSSITFGEKVDEQLKGTIRTCLGIFTEGGAGTYLGL 716
Query: 1160 PAIWGRNKCHSLAWIEERVKEKLEGWKETLLNQAGKEVLIKAIIQAIPLYAMAMVHFPKT 1219
P + +K L ++++R+KEKL+ W L+Q GKEVL+K++ A+P++AM+ P T
Sbjct: 717 PECFSGSKVDMLHYLKDRLKEKLDVWFTRCLSQGGKEVLLKSVALAMPVFAMSCFKLPIT 776
Query: 1220 FCNSLNSLVANFWWKGQGKDRGIHWRSWEKMTLSKDEGGMGFREFRMQNLAILAKQAWRV 1279
C +L S +A+FWW R IHW+SWE++ L KD GG+GFR+ + N A+LAKQAWR+
Sbjct: 777 TCENLESAMASFWWDSCDHSRKIHWQSWERLCLPKDSGGLGFRDIQSFNQALLAKQAWRL 836
Query: 1280 LTNPEALWVCVLKSVYFPTSDFLNASLGRNPSWMWRSLLAGRDFISRYIRWAVGGGLLIE 1339
L P+ L +LKS YF +DFL+A+L + PS+ WRS+L GR+ +S+ ++ VG G +
Sbjct: 837 LHFPDCLLSRLLKSRYFDATDFLDAALSQRPSFGWRSILFGRELLSKGLQKRVGDGASLF 896
Query: 1340 VWGDNWLSSG--EALIQPHNAPD--MKVSELISPHGEGWNSALVRSLFQPE--LALKVLQ 1393
VW D W+ A + + D +KV L++P W+ ++ LF PE L +K ++
Sbjct: 897 VWIDPWIDDNGFRAPWRKNLIYDVTLKVKALLNPRTGFWDEEVLHDLFLPEDILRIKAIK 956
Query: 1394 TPVSKLNQTDVLFWPHTPKGDYTVSSGFEIARSNSIKPQALSSRSHNIPELLW--RTIWK 1451
+S Q D W GD++V S + +A K Q L S P L +W
Sbjct: 957 PVIS---QADFFVWKLNKSGDFSVKSAYWLAYQT--KSQNLRSEVSMQPSTLGLKTQVWN 1011
Query: 1452 SQLPQKVKVFLWKASHNSLAVKYNLWRKRILPSGQCPVCCEAQETVEHMFFVCPWTRAVW 1511
Q K+K+FLWK VC E E+ H F+CP +R +W
Sbjct: 1012 LQTDPKIKIFLWK------------------------VCGELGESTNHTLFLCPLSRQIW 1047
Query: 1512 FGSSLQWVVSPQGLGSFDVWLLQKITALQTISLDFNKDF-----STLACILWSIWRGRNK 1566
S + P G + ++ I L + NK++ ILW IW+ RN
Sbjct: 1048 ALS--DYPFPPDGFSNGSIY--SNINHL--LENKDNKEWPINLRKIFPWILWRIWKNRNS 1101
Query: 1567 AVFNAI 1572
+F I
Sbjct: 1102 FIFEGI 1107
>emb|CAB78094.1| RNA-directed DNA polymerase-like protein [Arabidopsis thaliana]
gi|4538901|emb|CAB39638.1| RNA-directed DNA
polymerase-like protein [Arabidopsis thaliana]
gi|7485606|pir||T04018 hypothetical protein F17A8.60 -
Arabidopsis thaliana
Length = 1274
Score = 645 bits (1664), Expect = 0.0
Identities = 419/1330 (31%), Positives = 660/1330 (49%), Gaps = 76/1330 (5%)
Query: 435 METRSKKENLEVIRRSLGFDYLFTVNPRGLSGGLALFWKREVHIQILHSSQNYIHTSIFA 494
MET+++ E + +G+ + FT+ P GLSGGLAL+WK V ++IL ++ N+I
Sbjct: 1 METKNQDEFISKTFDWMGYAHRFTIPPEGLSGGLALYWKENVEVEILEAAPNFI------ 54
Query: 495 NNSVSDWDCTFVYGDPSSQRRRFLWPQITALRFRDNTPWCLLGDFNEILFAHEKEGMRPQ 554
R W +I++L + ++ W L GDFN+IL EK+G +
Sbjct: 55 ------------------DNRSVFWDKISSLGAQRSSAWLLTGDFNDILDNSEKQGGPLR 96
Query: 555 PPSVLQRFREFVHNSGLMDVDLKGSRFTWHSNPRDGFVTREKIDRVLTNWSWRNIFPNAS 614
FR FV +GL D++ G+ +W F+ + ++DR L N SW +FP +
Sbjct: 97 WEGFFLAFRSFVSQNGLWDINHTGNSLSWRGTRYSHFI-KSRLDRALGNCSWSELFPMSK 155
Query: 615 AMAYPQISSDHSPILLDL-SPPTWSKTPFKYEVFWDEHEQCSEVVAEGWLKPLHNEDCWK 673
SDH P++ +PP PF+++ E E+ +V E W + +K
Sbjct: 156 CEYLRFEGSDHRPLVTYFGAPPLKRSKPFRFDRRLREKEEIRALVKEVWELARQDSVLYK 215
Query: 674 DLENRIKSSKRTIWSWQRKTFKVAEKEIGRLKQELQSKQDRPNHLVDWNEVKNIKLEIDT 733
I +++I W ++ + K I + +Q L+S + D + + +I E++
Sbjct: 216 -----ISRCRQSIIKWTKEQNSNSAKAIKKAQQALESALSAD--IPDPSLIGSITQELEA 268
Query: 734 LWRQEELFWGQRSRVKWA*YGDKNSKFFHASTLKRRNRNRIDRVCDAQGTWKEGQTEVMH 793
+RQEELFW Q SRV+W GD+N +FHA+T RR N + + D G + ++
Sbjct: 269 AYRQEELFWKQWSRVQWLNSGDRNKGYFHATTRTRRMLNNLSVIEDGSGQEFHEEEQIAS 328
Query: 794 AFVSHYEEIFQSEGVNQIEDCLRGFPRKVTAELNNRLIMPASDAEIAEAVNLLGGLKAPG 853
S+++ IF + + ++ +++ N LI +S EI EA+ + KAPG
Sbjct: 329 TISSYFQNIFTTSNNSDLQVVQEALSPIISSHCNEELIKISSLLEIKEALFSISADKAPG 388
Query: 854 PDGLNGLFFKNHWATIQDSVCYAIKEFFST*NL*AEINETIVALVPKVDSPESVVQFRPI 913
PDG + FF +W I+ V I+ FF L +NET V L+PK+ +P V +RPI
Sbjct: 389 PDGFSASFFHAYWDIIEADVSRDIRSFFVDSCLSPRLNETHVTLIPKISAPRKVSDYRPI 448
Query: 914 SCCNYILKVISRIMVTRLKDDLNLLISPNQSAFVGGRLIQDNITVSQEAFHLLQRGESRM 973
+ CN K++++I+ RL+ L+ LIS +QSAFV GR I DN+ ++ E H L+ ++
Sbjct: 449 ALCNVQYKIVAKILTRRLQPWLSELISLHQSAFVPGRAIADNVLITHEILHFLRVSGAKK 508
Query: 974 KDYMAIKVDMSKTYDRLEWTFLEKTLLAYGFHPIWTARVLTLVKGATYKLKVNGFLSSTL 1033
MAIK DMSK YDR++W FL++ L+ GFH W V+ V +Y +NG ++
Sbjct: 509 YCSMAIKTDMSKAYDRIKWNFLQEVLMRLGFHDKWIRWVMQCVCTVSYSFLINGSPQGSV 568
Query: 1034 TPGRGLRQGDPLSPYLFVLATDVLSFMLTQAQRDGEISGFRFTPHSPPLTHLFFADDSLL 1093
P RGLRQGDPLSPYLF+L T+VLS + +AQ G + G R SP + HL FADD++
Sbjct: 569 VPSRGLRQGDPLSPYLFILCTEVLSGLCRKAQEKGVMVGIRVARGSPQVNHLLFADDTMF 628
Query: 1094 FAEATVKEATSIIHILNLYNRASGQRINVAKSGLIFGRSASNRVKRDISNLLHMAIWDSP 1153
F + ++ +IL Y ASGQ IN+AKS + F +KR + L +
Sbjct: 629 FCKTNPTCCGALSNILKKYELASGQSINLAKSAITFSSKTPQDIKRRVKLSLRIDNEGGI 688
Query: 1154 GQYLGLPAIWGRNKCHSLAWIEERVKEKLEGWKETLLNQAGKEVLIKAIIQAIPLYAMAM 1213
G+YLGLP +GR K + I +R++++ W L+ AGK++L+KA++ ++P YAM
Sbjct: 689 GKYLGLPEHFGRRKRDIFSSIVDRIRQRSHSWSIRFLSSAGKQILLKAVLSSMPSYAMMC 748
Query: 1214 VHFPKTFCNSLNSLVANFWWKGQGKDRGIHWRSWEKMTLSKDEGGMGFREFRMQNLAILA 1273
P + C + S++ FWW + R + W SW+K+TL +EGG+GFRE I A
Sbjct: 749 FKLPASLCKQIQSVLTRFWWDSKPDKRKMAWVSWDKLTLPINEGGLGFRE-------IEA 801
Query: 1274 KQAWRVLTNPEALWVCVLKSVYFPTSDFLNASLGRN-PSWMWRSLLAGRDFISRYIRWAV 1332
K +WR+L P +L VL Y TS F++ S + S WR +LAGRD + + + W++
Sbjct: 802 KLSWRILKEPHSLLSRVLLGKYCNTSSFMDCSASPSFASHGWRGILAGRDLLRKGLGWSI 861
Query: 1333 GGGLLIEVWGDNWL--SSGEALIQP--HNAPDMKVSELISPHGEGWNSALVRSLFQPELA 1388
G G I VW + WL SS + I P D+ V +LI + WN +R P+
Sbjct: 862 GQGDSINVWTEAWLSPSSPQTPIGPPTETNKDLSVHDLICHDVKSWNVEAIRK-HLPQYE 920
Query: 1389 LKVLQTPVSKLNQTDVLFWPHTPKGDYTVSSGFEIARSNSIKPQALSSRSHNIPELLW-R 1447
++ + ++ L D L W G+YT +G+ +A+ NS L + W +
Sbjct: 921 DQIRKITINALPLQDSLVWLPVKSGEYTTKTGYALAKLNSFPASQL--------DFNWQK 972
Query: 1448 TIWKSQLPQKVKVFLWKASHNSLAVKYNLWRKRILPSGQCPVCCEAQETVEHMFFVCPWT 1507
IWK KVK FLWKA +L V L R+ I C C + + ++ H+ +CP+
Sbjct: 973 NIWKIHTSPKVKHFLWKAMKGALPVGEALSRRNIEAEVTCKRCGQTESSL-HLMLLCPYA 1031
Query: 1508 RAVWFGSSLQWVVSPQGLGSFDVWLL--QKITALQTISLDFNKDFSTLACILWSIWRGRN 1565
+ VW + + + S S + L+ +++ AL L + L LW +W+ RN
Sbjct: 1032 KKVWELAPVLFNPSEATHSSVALLLVDAKRMVALPPTGLGSAPLYPWL---LWHLWKARN 1088
Query: 1566 KAVFNAIRPDPTFAIQQVASTLSAIDLAKPVTEKVISDGNQNTNQRPTAWRPPFGNLLKI 1625
+ +F+ + + L AI A+ E + + + P + P LK+
Sbjct: 1089 RLIFD------NHSCSEEGLVLKAILDARAWMEAQLLIHHPS----PISDYPSPTPNLKV 1138
Query: 1626 N---VDASWVSSVPQSAVGVLIRDKFST-LLAGSHAKVYSSSPLTAEASAIREGLSLAHN 1681
VDA+W +S +G ++D + + + + S L AE A+ L A +
Sbjct: 1139 TSCFVDAAWTTS-GYCGMGWFLQDPYKVKIKENQSSSSFVGSALMAETLAVHLALVDALS 1197
Query: 1682 LGCPEIIMESDSKILIDACKSETLVGEASAILQDIFYLKRLFYRCDFAWANRERNNSAHL 1741
G ++ + SD K LI S + E +L DI L F F + R N A
Sbjct: 1198 TGVRQLNVFSDCKELISLLNSGKSIVELRGLLHDIRELSVSFTHLCFFFIPRLSNVVADS 1257
Query: 1742 VAKMCMQNFL 1751
+AK + L
Sbjct: 1258 LAKSALSVIL 1267
>gb|AAD24601.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
thaliana] gi|25411729|pir||H84542 hypothetical protein
At2g16680 [imported] - Arabidopsis thaliana
Length = 1319
Score = 640 bits (1652), Expect = 0.0
Identities = 393/1226 (32%), Positives = 616/1226 (50%), Gaps = 46/1226 (3%)
Query: 449 RSLGFDYLFTVNPRGLSGGLALFWKREVHIQILHSSQNYIHTSIFANNSVSDWDCTFVYG 508
R LG+DY T+ P G SGGLA+FWK + I L +N + + + W + VYG
Sbjct: 12 RWLGYDYFHTIEPVGKSGGLAIFWKNHLEIDFLFEDKNLLDLKV--SQGKKSWFVSCVYG 69
Query: 509 DPSSQRRRFLWPQITALRFRDNTPWCLLGDFNEILFAHEKEGMRPQPPSVLQRFREFVHN 568
+P R L +++++ + N+ WC++GDFN+IL K G + S Q F+ + N
Sbjct: 70 NPVLHLRYLLLDKLSSIGVQRNSAWCMIGDFNDILSNDGKLGGPSRLISSFQPFKNMLLN 129
Query: 569 SGLMDVDLKGSRFTWHSNPRDGFVTREKIDRVLTNWSWRNIFPNASAMAYPQISSDHSPI 628
+ + G+ FTW D ++ + K+DR N W +F N+ ++ S H P+
Sbjct: 130 CDMHQMGSSGNSFTWGGTRNDQWI-QCKLDRCFGNSEWFTMFSNSHQWFLEKLGSHHRPV 188
Query: 629 LLD-LSPPTWSKTPFKYEVFWDEHEQCSEVVAEGWLKPLHNEDCWKDLENRIKSSKRTIW 687
L++ ++ + F Y+ + E QC+ W+ ++ L R+ ++ I
Sbjct: 189 LVNFVNDQEVFRGQFCYDKRFAEDPQCAASTLSSWIGNGISDVSSSML--RMVKCRKAIS 246
Query: 688 SWQRKTFKVAEKEIGRLKQELQSKQDRPNHLVDWNEVKNIKLEIDTLWRQEELFWGQRSR 747
W++ + A+ I RL+ EL +++ W+ + I+ ++ +R+EE FW +S+
Sbjct: 247 GWKKNSDFNAQNRILRLRSELD--EEKSKQYPCWSRISVIQTQLGVAFREEESFWRLKSK 304
Query: 748 VKWA*YGDKNSKFFHASTLKRRNRNRIDRVCDAQGTWKEGQTEVMHAFVSHYEEIFQSEG 807
KW GD+NSKFF A R +N + + D G E + ++E +F S
Sbjct: 305 DKWLFGGDRNSKFFQAMVKANRTKNSLRFLVDENGNEHTLNREKGNIASVYFENLFMSSY 364
Query: 808 VNQIEDCLRGFPRKVTAELNNRLIMPASDAEIAEAVNLLGGLKAPGPDGLNGLFFKNHWA 867
+ L GF +V+ E+N L ++ EI AV + AP
Sbjct: 365 PANSQSALDGFKTRVSEEMNQELTQAVTELEIHSAVFSINVESAP-----------EKLE 413
Query: 868 TIQDSVCYAIKEFFST*NL*AEINETIVALVPKVDSPESVVQFRPISCCNYILKVISRIM 927
Q S I FF T L E N T + L+PK +P+ + RPIS C+ + K+IS+I+
Sbjct: 414 CCQGSDYIEILGFFETGVLPQEWNHTHLYLIPKFTNPQRMSDIRPISLCSVLYKIISKIL 473
Query: 928 VTRLKDDLNLLISPNQSAFVGGRLIQDNITVSQEAFHLLQRGESRMKDYMAIKVDMSKTY 987
+LK L ++SP+QSAF RLI DNI ++ E H L+ + K++M K DMSK Y
Sbjct: 474 SFKLKKHLPSIVSPSQSAFFAERLISDNILIAHEIVHSLRTNDKISKEFMVFKTDMSKAY 533
Query: 988 DRLEWTFLEKTLLAYGFHPIWTARVLTLVKGATYKLKVNGFLSSTLTPGRGLRQGDPLSP 1047
DR+EW+FL++ L+A GF+ W + ++ V TY + +NG +TP RG+RQGDP+SP
Sbjct: 534 DRVEWSFLQEILVALGFNDKWISWIMGCVTSVTYSVLINGQHFGHITPERGIRQGDPISP 593
Query: 1048 YLFVLATDVLSFMLTQAQRDGEISGFRFTPHSPPLTHLFFADDSLLFAEATVKEATSIIH 1107
+LFVL T+ L +L QA+ ++SG +F P + HL F DD+ L AT + ++
Sbjct: 594 FLFVLCTEALIHILQQAENSKKVSGIQFNGSGPSVNHLLFVDDTQLVCRATKSDCEQMML 653
Query: 1108 ILNLYNRASGQRINVAKSGLIFGRSASNRVKRDISNLLHMAIWDSPGQYLGLPAIWGRNK 1167
L+ Y SGQ INV KS + FG KR I N + + G+YLGLP +K
Sbjct: 654 CLSQYGHISGQLINVEKSSITFGVKVDEDTKRWIKNRSGIHLEGGTGKYLGLPENLSGSK 713
Query: 1168 CHSLAWIEERVKEKLEGWKETLLNQAGKEVLIKAIIQAIPLYAMAMVHFPKTFCNSLNSL 1227
+I+E+++ L GW + L+Q GKE+L+K+I A+P+Y M PK C L S+
Sbjct: 714 QDLFGYIKEKLQSHLSGWYDKTLSQGGKEILLKSIALALPVYIMTCFRLPKGLCTKLTSV 773
Query: 1228 VANFWWKGQGKDRGIHWRSWEKMTLSKDEGGMGFREFRMQNLAILAKQAWRVLTNPEALW 1287
+ +FWW IHW +K+TL K GG GF++ + N A+LAKQAWR+ ++ +++
Sbjct: 774 MMDFWWNSMEFSNKIHWIGGKKLTLPKSLGGFGFKDLQCFNQALLAKQAWRLFSDSKSIV 833
Query: 1288 VCVLKSVYFPTSDFLNASLGRNPSWMWRSLLAGRDFISRYIRWAVGGGLLIEVWGDNWLS 1347
+ KS YF +DFLNA G PS+ WRS+L GR+ ++ ++ +G G VW D WL
Sbjct: 834 SQIFKSRYFMNTDFLNARQGTRPSYTWRSILYGRELLNGGLKRLIGNGEQTNVWIDKWLF 893
Query: 1348 SGEALIQPHNAPD-----MKVSELISPHGEGWNSALVRSLF-QPELALKVLQTPVSKLNQ 1401
G + +P N MKVS LI P WN + LF + ++ L + Q P+ ++
Sbjct: 894 DGHSR-RPMNLHSLMNIHMKVSHLIDPLTRNWNLKKLTELFHEKDVQLIMHQRPL--ISS 950
Query: 1402 TDVLFWPHTPKGDYTVSSGFEIARSNSIKPQALSSRSHNIPELLWRTIWKSQLPQKVKVF 1461
D W T G YTV SG+E + + K + + L+ +W + K+KVF
Sbjct: 951 EDSYCWAGTNNGLYTVKSGYERSSRETFKNLFKEADVYPSVNPLFDKVWSLETVPKIKVF 1010
Query: 1462 LWKASHNSLAVKYNLWRKRILPSGQCPVCCEAQETVEHMFFVCPWTRAVWFGSSLQWVVS 1521
+WKA +LAV+ L + I + C C E ET+ H+ F CP+ R VW S +Q +
Sbjct: 1011 MWKALKGALAVEDRLRSRGIRTADGCLFCKEEIETINHLLFQCPFARQVWALSLIQAPAT 1070
Query: 1522 PQGLGSFDVWLLQKITALQTISLDFN--KDFSTLA-CILWSIWRGRNKAVFNAIRPDPTF 1578
F + I + S +F + T++ +LW IW+ RNK +F
Sbjct: 1071 -----GFGTSIFSNINHVIQNSQNFGIPRHMRTVSPWLLWEIWKNRNKTLFQG---TGLT 1122
Query: 1579 AIQQVASTLSAIDLAKPVTEKVISDGNQNTNQRPTAWRPPFGNLLKINVDASWVSSVPQS 1638
+ + VA +L EK S G + ++ W PP LK N+ +W +
Sbjct: 1123 SSEIVAKAYEECNLWINAQEK--SSGGVSPSEH--KWNPPPAGELKCNIGVAWSRQKQLA 1178
Query: 1639 AVGVLIRDKFSTLL---AGSHAKVYS 1661
V ++RD +L S+++VYS
Sbjct: 1179 GVSWVLRDSMGQVLLHSRRSYSQVYS 1204
>pir||G86379 protein F5A9.24 [imported] - Arabidopsis thaliana
gi|9945082|gb|AAG03119.1| F5A9.24 [Arabidopsis thaliana]
Length = 1254
Score = 639 bits (1648), Expect = 0.0
Identities = 361/1051 (34%), Positives = 575/1051 (54%), Gaps = 21/1051 (1%)
Query: 435 METRSKKENLEVIRRSLGFDYLFTVNPRGLSGGLALFWKREVHIQILHSSQNYIHTSIFA 494
MET +++L I+ L +D ++TV P G GGLAL WK V + + +N + +
Sbjct: 1 METMHSRDDLVDIQSWLEYDQVYTVEPVGKCGGLALLWKSSVQVDLKFVDKNLMDAQV-- 58
Query: 495 NNSVSDWDCTFVYGDPSSQRRRFLWPQITALRFRDNTPWCLLGDFNEILFAHEKEGMRPQ 554
++ + VYGDP +R W +I+ + WC+ GDFN+IL EK G +
Sbjct: 59 QFGAVNFCVSCVYGDPDRSKRSQAWERISRIGVGRRDKWCMFGDFNDILHNGEKNGGPRR 118
Query: 555 PPSVLQRFREFVHNSGLMDVDLKGSRFTWHSNPRDGFVTREKIDRVLTNWSWRNIFPNAS 614
+ F E + L+++ G+ FTW D ++ + ++DR N W FP ++
Sbjct: 119 SDLDCKAFNEMIKGCDLVEMPAHGNGFTWAGRRGDHWI-QCRLDRAFGNKEWFCFFPVSN 177
Query: 615 AMAYPQISSDHSPILLDLSPPTWS-KTPFKYEVFWDEHEQCSEVVAEGWLKPLHNEDCWK 673
SDH P+L+ L S + F+++ + E E + W + H +
Sbjct: 178 QTFLDFRGSDHRPVLIKLMSSQDSYRGQFRFDKRFLFKEDVKEAIIRTWSRGKHGTNI-- 235
Query: 674 DLENRIKSSKRTIWSWQRKTFKVAEKEIGRLKQELQSKQDRPNHLVDWNEVKNIKLEIDT 733
+ +R+++ ++++ SW+++ + +I +L+ L+ +Q + + V +K ++
Sbjct: 236 SVADRLRACRKSLSSWKKQNNLNSLDKINQLEAALEKEQSLVWPI--FQRVSVLKKDLAK 293
Query: 734 LWRQEELFWGQRSRVKWA*YGDKNSKFFHASTLKRRNRNRIDRVCDAQGTWKEGQTEVMH 793
+R+EE +W Q+SR KW G++NSK+FHA+ + R R RI+++ D G + +
Sbjct: 294 AYREEEAYWKQKSRQKWLRSGNRNSKYFHAAVKQNRQRKRIEKLKDVNGNMQTSEAAKGE 353
Query: 794 AFVSHYEEIFQSEGVNQIEDCLRGFPRKVTAELNNRLIMPASDAEIAEAVNLLGGLKAPG 853
+++ +F+S + D G +V+ +N L+ S EI EAV + APG
Sbjct: 354 VAAAYFGNLFKSSNPSGFTDWFSGLVPRVSEVMNESLVGEVSAQEIKEAVFSIKPASAPG 413
Query: 854 PDGLNGLFFKNHWATIQDSVCYAIKEFFST*NL*AEINETIVALVPKVDSPESVVQFRPI 913
PDG++ LFF+++W+T+ + V +K+FF+ + AE N T + L+PK P +V RPI
Sbjct: 414 PDGMSALFFQHYWSTVGNQVTSEVKKFFADGIMPAEWNYTHLCLIPKTQHPTEMVDLRPI 473
Query: 914 SCCNYILKVISRIMVTRLKDDLNLLISPNQSAFVGGRLIQDNITVSQEAFHLLQRGESRM 973
S C+ + K+IS+IM RL+ L ++S QSAFV RLI DNI V+ E H L+
Sbjct: 474 SLCSVLYKIISKIMAKRLQPWLPEIVSDTQSAFVSERLITDNILVAHELVHSLKVHPRIS 533
Query: 974 KDYMAIKVDMSKTYDRLEWTFLEKTLLAYGFHPIWTARVLTLVKGATYKLKVNGFLSSTL 1033
++MA+K DMSK YDR+EW++L LL+ GFH W ++ V TY + +N +
Sbjct: 534 SEFMAVKSDMSKAYDRVEWSYLRSLLLSLGFHLKWVNWIMVCVSSVTYSVLINDCPFGLI 593
Query: 1034 TPGRGLRQGDPLSPYLFVLATDVLSFMLTQAQRDGEISGFRFTPHSPPLTHLFFADDSLL 1093
RGLRQGDPLSP+LFVL T+ L+ +L +AQ +G + G +F+ + P + HL FADDSL
Sbjct: 594 ILQRGLRQGDPLSPFLFVLCTEGLTHLLNKAQWEGALEGIQFSENGPMVHHLLFADDSLF 653
Query: 1094 FAEATVKEATSIIHILNLYNRASGQRINVAKSGLIFGRSASNRVKRDISNLLHMAIWDSP 1153
+A+ +++ + IL +Y A+GQ IN+ KS + FG ++K I L +
Sbjct: 654 LCKASREQSLVLQKILKVYGNATGQTINLNKSSITFGEKVDEQLKGTIRTCLGIFTEGGA 713
Query: 1154 GQYLGLPAIWGRNKCHSLAWIEERVKEKLEGWKETLLNQAGKEVLIKAIIQAIPLYAMAM 1213
G YLGLP + +K L ++++R+KEKL+ W L+Q GKEVL+K++ A+P++AM+
Sbjct: 714 GTYLGLPECFSGSKVDMLHYLKDRLKEKLDVWFTRCLSQGGKEVLLKSVALAMPVFAMSC 773
Query: 1214 VHFPKTFCNSLNSLVANFWWKGQGKDRGIHWRSWEKMTLSKDEGGMGFREFRMQNLAILA 1273
P T C +L S +A+FWW R IHW+SWE++ L KD GG+GFR+ + N A+LA
Sbjct: 774 FKLPITTCENLESAMASFWWDSCDHSRKIHWQSWERLCLPKDSGGLGFRDIQSFNQALLA 833
Query: 1274 KQAWRVLTNPEALWVCVLKSVYFPTSDFLNASLGRNPSWMWRSLLAGRDFISRYIRWAVG 1333
KQAWR+L P+ L +LKS YF +DFL+A+L + PS+ WRS+L GR+ +S+ ++ VG
Sbjct: 834 KQAWRLLHFPDCLLSRLLKSRYFDATDFLDAALSQRPSFGWRSILFGRELLSKGLQKRVG 893
Query: 1334 GGLLIEVWGDNWLSSG--EALIQPHNAPD--MKVSELISPHGEGWNSALVRSLFQPE--L 1387
G + VW D W+ A + + D +KV L++P W+ ++ LF PE L
Sbjct: 894 DGASLFVWIDPWIDDNGFRAPWRKNLIYDVTLKVKALLNPRTGFWDEEVLHDLFLPEDIL 953
Query: 1388 ALKVLQTPVSKLNQTDVLFWPHTPKGDYTVSSGFEIARSNSIKPQALSSRSHNIPELLW- 1446
+K ++ +S Q D W GD++V S + +A K Q L S P L
Sbjct: 954 RIKAIKPVIS---QADFFVWKLNKSGDFSVKSAYWLAYQT--KSQNLRSEVSMQPSTLGL 1008
Query: 1447 -RTIWKSQLPQKVKVFLWKASHNSLAVKYNL 1476
+W Q K+K+FLWK L V NL
Sbjct: 1009 KTQVWNLQTDPKIKIFLWKVLSGILPVAENL 1039
>gb|AAD29058.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
thaliana] gi|25411151|pir||H84465 hypothetical protein
At2g05200 [imported] - Arabidopsis thaliana
Length = 1229
Score = 602 bits (1553), Expect = e-170
Identities = 385/1227 (31%), Positives = 602/1227 (48%), Gaps = 65/1227 (5%)
Query: 540 NEILFAHEKEGMRPQPPSVLQRFREFVHNSGLMDVDLKGSRFTWHSNPRDGFVTREKIDR 599
NEIL EK G P+ FR F+ +GL D+ G+ F+W D FV R+++DR
Sbjct: 36 NEILDNSEKRGGPPRDQGSFIDFRSFISKNGLWDLKYSGNPFSWRGMRYDWFV-RQRLDR 94
Query: 600 VLTNWSWRNIFPNASAMAYPQISSDHSPILLDLSPPTWSKT-PFKYEVFWDEHEQCSEVV 658
++N SW FP+ + SDH P+++ + + F+++ +++ + ++
Sbjct: 95 AMSNNSWLESFPSGRSEYLRFEGSDHRPLVVFVDEARVKRRGQFRFDNRLRDNDVVNALI 154
Query: 659 AEGWLKPLHNEDCWKDLENRIKSSKRTIWSWQR----KTFKVAEKEIGRLKQELQSKQDR 714
E W + ++ +R I +W R + ++ EK L++ L +
Sbjct: 155 QETWTNAGD-----ASVLTKMNQCRREIINWTRLQNLNSAELIEKTQKALEEALTADPPN 209
Query: 715 PNHLVDWNEVKNIKLEIDTLWRQEELFWGQRSRVKWA*YGDKNSKFFHASTLKRRNRNRI 774
P + + ++ ++ EE FW QRSRV W GD+N+ +FHA T RR +NR+
Sbjct: 210 PT------TIGALTATLEHAYKLEEQFWKQRSRVLWLHSGDRNTGYFHAVTRNRRTQNRL 263
Query: 775 DRVCDAQGTWKEGQTEVMHAFVSHYEEIFQSEGVNQIEDCLRGFPRKVTAELNNRLIMPA 834
+ D G + + ++ ++++IF SE V+ N+ L
Sbjct: 264 TVMEDINGVAQHEEHQISQIISGYFQQIFTSESDGDFSVVDEAIEPMVSQGDNDFLTRIP 323
Query: 835 SDAEIAEAVNLLGGLKAPGPDGLNGLFFKNHWATIQDSVCYAIKEFFST*NL*AEINETI 894
+D E+ +AV + KAPGPDG F+ ++W I V I+ FF++ N +NET
Sbjct: 324 NDEEVKDAVFSINASKAPGPDGFTAGFYHSYWHIISTDVGREIRLFFTSKNFPRRMNETH 383
Query: 895 VALVPKVDSPESVVQFRPISCCNYILKVISRIMVTRLKDDLNLLISPNQSAFVGGRLIQD 954
+ L+PK P V +RPI+ CN K++++IM R++ L LIS NQSAFV GR+I D
Sbjct: 384 IRLIPKDLGPRKVADYRPIALCNIFYKIVAKIMTKRMQLILPKLISENQSAFVPGRVISD 443
Query: 955 NITVSQEAFHLLQRGESRMKDYMAIKVDMSKTYDRLEWTFLEKTLLAYGFHPIWTARVLT 1014
N+ ++ E H L+ ++ MA+K DMSK YDR+EW FL+K L +GFH IW VL
Sbjct: 444 NVLITHEVLHFLRTSSAKKHCSMAVKTDMSKAYDRVEWDFLKKVLQRFGFHSIWIDWVLE 503
Query: 1015 LVKGATYKLKVNGFLSSTLTPGRGLRQGDPLSPYLFVLATDVLSFMLTQAQRDGEISGFR 1074
V +Y +NG + P RGLRQGDPLSP LF+L T+VLS + T+AQR ++ G R
Sbjct: 504 CVTSVSYSFLINGTPQGKVVPTRGLRQGDPLSPCLFILCTEVLSGLCTRAQRLRQLPGVR 563
Query: 1075 FTPHSPPLTHLFFADDSLLFAEATVKEATSIIHILNLYNRASGQRINVAKSGLIFGRSAS 1134
+ + P + HL FADD++ F+++ + + IL+ Y +ASGQ IN KS + F
Sbjct: 564 VSINGPRVNHLLFADDTMFFSKSDPESCNKLSEILSRYGKASGQSINFHKSSVTFSSKTP 623
Query: 1135 NRVKRDISNLLHMAIWDSPGQYLGLPAIWGRNKCHSLAWIEERVKEKLEGWKETLLNQAG 1194
VK + +L + G+YLGLP +GR K I +++++K W L+QAG
Sbjct: 624 RSVKGQVKRILKIRKEGGTGKYLGLPEHFGRRKRDIFGAIIDKIRQKSHSWASRFLSQAG 683
Query: 1195 KEVLIKAIIQAIPLYAMAMVHFPKTFCNSLNSLVANFWWKGQGKDRGIHWRSWEKMTLSK 1254
K+V++KA++ ++PLY+M+ P C + SL+ FWW + R W +W K+T K
Sbjct: 684 KQVMLKAVLASMPLYSMSCFKLPSALCRKIQSLLTRFWWDTKPDVRKTSWVAWSKLTNPK 743
Query: 1255 DEGGMGFREFRMQNLAILAKQAWRVLTNPEALWVCVLKSVYFPTSDFLNASLGRNPSWMW 1314
+ GG+GFR+ N ++LAK WR+L +PE+L +L Y +S F+ L PS W
Sbjct: 744 NAGGLGFRDIERCNDSLLAKLGWRLLNSPESLLSRILLGKYCHSSSFMECKLPSQPSHGW 803
Query: 1315 RSLLAGRDFISRYIRWAVGGGLLIEVWGDNWLSSGEALIQPHNA----PDMKVSELISPH 1370
RS++AGR+ + + W + G + +W D WLS + L+ A D++VS LI+ +
Sbjct: 804 RSIIAGREILKEGLGWLITNGEKVSIWNDPWLSISKPLVPIGPALREHQDLRVSALINQN 863
Query: 1371 GEGWNSALVRSLFQPELALKVLQTPVSKLNQTDVLFWPHTPKGDYTVSSGFEIARSNSIK 1430
W+ + ++ P + Q P D L W G YT SG+ IA SI
Sbjct: 864 TLQWDWNKI-AVILPNYENLIKQLPAPSSRGVDKLAWLPVKSGQYTSRSGYGIASVASIP 922
Query: 1431 -PQALSSRSHNIPELLWRTIWKSQLPQKVKVFLWKASHNSLAVKYNLWRKRILPSGQCPV 1489
PQ + N +WK Q K+K +WKA+ +L V L R+ I PS C
Sbjct: 923 IPQTQFNWQSN--------LWKLQTLPKIKHLMWKAAMEALPVGIQLVRRHISPSAACH- 973
Query: 1490 CCEAQETVEHMFFVCPWTRAVWFGSSLQWVVSPQGLGSFD-VWLLQKITALQTISLDFNK 1548
C A E+ H+FF C + VW + LQ P G D + LL+K L +
Sbjct: 974 RCGAPESTTHLFFHCEFAAQVWELAPLQETTVPPGSSMLDALSLLKKAIILPPTGVTSAA 1033
Query: 1549 DFSTLACILWSIWRGRNKAVFNAIRPDPTFAIQQVASTLSAIDLAKPVTEKVISDGNQNT 1608
F + C ++ +A+ +A+ A Q L P T V+
Sbjct: 1034 LFPWI-CGIYGKLGTMTRAILDAL------AWQSAQRCL-------PKTRNVV------- 1072
Query: 1609 NQRPTAWRPPFGNLLKINVDASWVSSVPQSAVGVLIRDKFSTLLAGSHAKVYSS------ 1662
P + P + VDA+W++ + G + + S YS+
Sbjct: 1073 --HPISQLPVLRSGYFCFVDAAWIAQSSLAGSGWVFQ---SATALEKETATYSAGCRRLP 1127
Query: 1663 SPLTAEASAIREGLSLAHNLGCPEIIMESDSKILIDACKSETLVGEASAILQDIFYLKRL 1722
S L+AEA AI+ L A LG ++++ SDSK ++DA S + E +L +I L+
Sbjct: 1128 SALSAEAWAIKSALLHALQLGRTDLMVLSDSKSVVDALTSNISINEIYGLLMEIRALRVS 1187
Query: 1723 FYRCDFAWANRERNNSAHLVAKMCMQN 1749
F+ F + +R N A AK+ N
Sbjct: 1188 FHSLCFNFISRSANAIADATAKLSFCN 1214
>gb|AAG51783.1| reverse transcriptase, putative; 16838-20266 [Arabidopsis thaliana]
gi|25405244|pir||E96519 probable reverse transcriptase,
16838-20266 [imported] - Arabidopsis thaliana
Length = 1142
Score = 595 bits (1535), Expect = e-168
Identities = 369/1146 (32%), Positives = 562/1146 (48%), Gaps = 48/1146 (4%)
Query: 621 ISSDHSPILLDLSPPT-WSKTPFKYEVFWDEHEQCSEVVAEGWLKPLHNEDCWKDLENRI 679
++SDHSP++ ++ K F+++ W + E +++GW L + ++
Sbjct: 2 LASDHSPVIATIADKIPRGKQNFRFDKRWIGKDGLLEAISQGW--NLDSGFREGQFVEKL 59
Query: 680 KSSKRTIWSWQRKTFKVAEKEIGRLKQEL---QSKQDRPNHLVDWNEVKNIKLEIDTLWR 736
+ +R I W++ + I LK EL Q DR E+ + L + +R
Sbjct: 60 TNCRRAISKWRKSLIPFGRQTIEDLKAELDVAQRDDDRSRE-----EITELTLRLKEAYR 114
Query: 737 QEELFWGQRSRVKWA*YGDKNSKFFHASTLKRRNRNRIDRVCDAQGTWKEGQTEVMHAFV 796
EE +W Q+SR W GD NSKFFHA T +RR RNRI + D G W ++ + V
Sbjct: 115 DEEQYWYQKSRSLWMKLGDNNSKFFHALTKQRRARNRITGLHDENGIWSIEDDDIQNIAV 174
Query: 797 SHYEEIFQSEGVNQIEDCLRGFPRKVTAELNNRLIMPASDAEIAEAVNLLGGLKAPGPDG 856
S+++ +F + ++ L +T +N+ L A++ E+ A+ ++ KAPGPDG
Sbjct: 175 SYFQNLFTTANPQVFDEALGEVQVLITDRINDLLTADATECEVRAALFMIHPEKAPGPDG 234
Query: 857 LNGLFFKNHWATIQDSVCYAIKEFFST*NL*AEINETIVALVPKVDSPESVVQFRPISCC 916
+ LFF+ WA I+ + + F +N T + L+PK + P + + RPIS C
Sbjct: 235 MTALFFQKSWAIIKSDLLSLVNSFLQEGVFDKRLNTTNICLIPKTERPTRMTELRPISLC 294
Query: 917 NYILKVISRIMVTRLKDDLNLLISPNQSAFVGGRLIQDNITVSQEAFHLLQRGESRMKDY 976
N KVIS+I+ RLK L LIS QSAFV GRLI DNI ++QE FH L+ S +
Sbjct: 295 NVGYKVISKILCQRLKTVLPNLISETQSAFVDGRLISDNILIAQEMFHGLRTNSSCKDKF 354
Query: 977 MAIKVDMSKTYDRLEWTFLEKTLLAYGFHPIWTARVLTLVKGATYKLKVNGFLSSTLTPG 1036
MAIK DMSK YD++EW F+E L GF W + ++ + YK+ +NG + P
Sbjct: 355 MAIKTDMSKAYDQVEWNFIEALLRKMGFCEKWISWIMWCITTVQYKVLINGQPKGLIIPE 414
Query: 1037 RGLRQGDPLSPYLFVLATDVLSFMLTQAQRDGEISGFRFTPHSPPLTHLFFADDSLLFAE 1096
RGLRQGDPLSPYLF+L T+VL + +A+R I+G + SP ++HL FADDSL F +
Sbjct: 415 RGLRQGDPLSPYLFILCTEVLIANIRKAERQNLITGIKVATPSPAVSHLLFADDSLFFCK 474
Query: 1097 ATVKEATSIIHILNLYNRASGQRINVAKSGLIFGRSASNRVKRDISNLLHMAIWDSPGQY 1156
A ++ I+ IL Y SGQ+IN +KS + FG + +K DI +L + G Y
Sbjct: 475 ANKEQCGIILEILKQYESVSGQQINFSKSSIQFGHKVEDSIKADIKLILGIHNLGGMGSY 534
Query: 1157 LGLPAIWGRNKCHSLAWIEERVKEKLEGWKETLLNQAGKEVLIKAIIQAIPLYAMAMVHF 1216
LGLP G +K +++ +R++ ++ GW L++ GKEV+IK++ +P Y M+
Sbjct: 535 LGLPESLGGSKTKVFSFVRDRLQSRINGWSAKFLSKGGKEVMIKSVAATLPRYVMSCFRL 594
Query: 1217 PKTFCNSLNSLVANFWWKGQGKDRGIHWRSWEKMTLSKDEGGMGFREFRMQNLAILAKQA 1276
PK + L S VA FWW G RG+HW +W+K+ SK +GG+GFR N A+LAKQ
Sbjct: 595 PKAITSKLTSAVAKFWWSSNGDSRGMHWMAWDKLCSSKSDGGLGFRNVDDFNSALLAKQL 654
Query: 1277 WRVLTNPEALWVCVLKSVYFPTSDFLNASLGRNPSWMWRSLLAGRDFISRYIRWAVGGGL 1336
WR++T P++L+ V K YF S+ L++ +PS+ WRS+++ R + + + VG G
Sbjct: 655 WRLITAPDSLFAKVFKGRYFRKSNPLDSIKSYSPSYGWRSMISARSLVYKGLIKRVGSGA 714
Query: 1337 LIEVWGDNWLSS--------GEALIQPHNAPDMKVSELISPHGEGWNSALVRSLFQPELA 1388
I VW D W+ + G +++ P +KV LI WN L++ LF PE
Sbjct: 715 SISVWNDPWIPAQFPRPAKYGGSIVD----PSLKVKSLIDSRSNFWNIDLLKELFDPEDV 770
Query: 1389 LKVLQTPVSKLNQTDVLFWPHTPKGDYTVSSGFEIARSNSIKPQALSSRSHNIPEL--LW 1446
+ P+ N D L W T G+YTV SG+ AR + + L P+L L
Sbjct: 771 PLISALPIGNPNMEDTLGWHFTKAGNYTVKSGYHTARLDLNEGTTLIG-----PDLTTLK 825
Query: 1447 RTIWKSQLPQKVKVFLWKASHNSLAVKYNLWRKRILPSGQCPVCCEAQETVEHMFFVCPW 1506
IWK Q P K++ FLW+ + V NL ++ IL C C ++E++ H F C
Sbjct: 826 AYIWKVQCPPKLRHFLWQILSGCVPVSENLRKRGILCDKGCVSCGASEESINHTLFQCHP 885
Query: 1507 TRAVWFGSSLQWVVSPQGLGSFDVWLLQKITALQTI--SLDFNKDFSTLACILWSIWRGR 1564
R +W S + P G F + T L + + D + I+W IW+ R
Sbjct: 886 ARQIWALSQI-----PTAPGIFPSNSI--FTNLDHLFWRIPSGVDSAPYPWIIWYIWKAR 938
Query: 1565 NKAVFNAIRPDP----TFAIQQVASTLSA-IDLAKPVTEKVISDGNQNTNQRPTAWRPPF 1619
N+ VF + DP A+++ S A ++L + D R + F
Sbjct: 939 NEKVFENVDKDPMEILLLAVKEAQSWQEAQVELHSERHGSLSID--SRIRVRDVSQDTTF 996
Query: 1620 GNLLKINVDASWVSSVPQSAVGVLIRDKFSTLLAGSHAKVYSS-SPLTAEASAIREGLSL 1678
+ +D SW +S S G A V S SPL E A+ +
Sbjct: 997 SG-FRCFIDGSWKASDQFSGTGWFCLSSLGESPTMGAANVRRSLSPLHTEMEALLWAMKC 1055
Query: 1679 AHNLGCPEIIMESDSKILIDACKSETLVGEASAILQDIFYLKRLFYRCDFAWANRERNNS 1738
+ +D L+ S T S L+++ + F + +R N
Sbjct: 1056 MIGADNQNVAFFTDCSDLVKMVSSPTEWPAFSVYLEELQSDREEFTNFSLSLISRSANVK 1115
Query: 1739 AHLVAK 1744
A +A+
Sbjct: 1116 ADKLAR 1121
>emb|CAB81184.1| putative protein [Arabidopsis thaliana] gi|4539357|emb|CAB40051.1|
putative protein [Arabidopsis thaliana]
gi|7486147|pir||T04278 hypothetical protein F25I24.40 -
Arabidopsis thaliana
Length = 1294
Score = 588 bits (1516), Expect = e-166
Identities = 322/928 (34%), Positives = 499/928 (53%), Gaps = 7/928 (0%)
Query: 409 RGVAATPTGRELRTLCSKNKPTIVFLMETRSKKENLEVIRRSLGFDYLFTVNPRGLSGGL 468
+G+ T +L LC K ++FL+ET +K E + + LGF + T P+G SGGL
Sbjct: 370 KGIGVPLTQSQLSNLCKVFKFDVLFLIETLNKCEVISNLASVLGFPNVITQPPQGHSGGL 429
Query: 469 ALFWKREVHIQILHSSQNYIHTSIFANNSVSDWDCTFVYGDPSSQRRRFLWPQITALRFR 528
AL WK V + L+ +I I NN ++ + VYG P R LW L
Sbjct: 430 ALLWKDSVRLSNLYQDDRHIDVHISINNI--NFYLSRVYGHPCQSERHSLWTHFENLSKT 487
Query: 529 DNTPWCLLGDFNEILFAHEKEGMRPQPPSVLQRFREFVHNSGLMDVDLKGSRFTWHSNPR 588
N PW L+GDFNEIL +EK G + + FR V L D+ G RF+W R
Sbjct: 488 RNDPWILIGDFNEILSNNEKIGGPQRDEWTFRGFRNMVSTCDLKDIRSIGDRFSWVGE-R 546
Query: 589 DGFVTREKIDRVLTNWSWRNIFPNASAMAYPQISSDHSPILLDLSPPTWSKT-PFKYEVF 647
+ +DR N +FP A SDH P+ L L K PF+++
Sbjct: 547 HSHTVKCCLDRAFINSEGAFLFPFAELEFLEFTGSDHKPLFLSLEKTETRKMRPFRFDKR 606
Query: 648 WDEHEQCSEVVAEGWLKPLHNEDCWKDLENRIKSSKRTIWSWQRKTFKVAEKEIGRLKQE 707
E V GW K ++ + K L +++++ ++ + + K+ + I +L+
Sbjct: 607 LLEVPHFKTYVKAGWNKAINGQR--KHLPDQVRTCRQAMAKLKHKSNLNSRIRINQLQAA 664
Query: 708 LQSKQDRPNHLVDWNEVKNIKLEIDTLWRQEELFWGQRSRVKWA*YGDKNSKFFHASTLK 767
L N + + +I+ E+ +R EE +W Q+SR +W GD+N++FFHA T
Sbjct: 665 LDKAMSSVNR-TERRTISHIQRELTVAYRDEERYWQQKSRNQWMKEGDRNTEFFHACTKT 723
Query: 768 RRNRNRIDRVCDAQGTWKEGQTEVMHAFVSHYEEIFQSEGVNQIEDCLRGFPRKVTAELN 827
R + NR+ + D +G G E+ + ++++S G GF VT ++N
Sbjct: 724 RFSVNRLVTIKDEEGMIYRGDKEIGVHAQEFFTKVYESNGRPVSIIDFAGFKPIVTEQIN 783
Query: 828 NRLIMPASDAEIAEAVNLLGGLKAPGPDGLNGLFFKNHWATIQDSVCYAIKEFFST*NL* 887
+ L SD EI A+ +G KAPGPDGL F+K+ W + V +K FF T +
Sbjct: 784 DDLTKDLSDLEIYNAICHIGDDKAPGPDGLTARFYKSCWEIVGPDVIKEVKIFFRTSYMK 843
Query: 888 AEINETIVALVPKVDSPESVVQFRPISCCNYILKVISRIMVTRLKDDLNLLISPNQSAFV 947
IN T + ++PK+ +PE++ +RPI+ CN + K+IS+ +V RLK L+ ++S +Q+AF+
Sbjct: 844 QSINHTNICMIPKITNPETLSDYRPIALCNVLYKIISKCLVERLKGHLDAIVSDSQAAFI 903
Query: 948 GGRLIQDNITVSQEAFHLLQRGESRMKDYMAIKVDMSKTYDRLEWTFLEKTLLAYGFHPI 1007
GRL+ DN+ ++ E H L+ + + YMA+K D+SK YDR+EW FLE T+ +GF
Sbjct: 904 PGRLVNDNVMIAHEMMHSLKTRKRVSQSYMAVKTDVSKAYDRVEWNFLETTMRLFGFSET 963
Query: 1008 WTARVLTLVKGATYKLKVNGFLSSTLTPGRGLRQGDPLSPYLFVLATDVLSFMLTQAQRD 1067
W ++ VK Y + VNG T+ P RG+RQGDPLSPYLF+L D+L+ ++ +
Sbjct: 964 WIKWIMGAVKSVNYSVLVNGIPHGTIQPQRGIRQGDPLSPYLFILCADILNHLIKNRVAE 1023
Query: 1068 GEISGFRFTPHSPPLTHLFFADDSLLFAEATVKEATSIIHILNLYNRASGQRINVAKSGL 1127
G+I G R P +THL FADDSL F ++ V+ ++ + ++Y SGQ+IN++KS +
Sbjct: 1024 GDIRGIRIGNGVPGVTHLQFADDSLFFCQSNVRNCQALKDVFDVYEYYSGQKINMSKSMI 1083
Query: 1128 IFGRSASNRVKRDISNLLHMAIWDSPGQYLGLPAIWGRNKCHSLAWIEERVKEKLEGWKE 1187
FG + + N+L + G+YLGLP +GR K +I ERVK++ W
Sbjct: 1084 TFGSRVHGTTQNRLKNILGIQSHGGGGKYLGLPEQFGRKKRDMFNYIIERVKKRTSSWSA 1143
Query: 1188 TLLNQAGKEVLIKAIIQAIPLYAMAMVHFPKTFCNSLNSLVANFWWKGQGKDRGIHWRSW 1247
L+ AGKE+++K++ ++P+YAM+ P + + +L+ NFWW+ K R I W +W
Sbjct: 1144 KYLSPAGKEIMLKSVAMSMPVYAMSCFKLPLNIVSEIEALLMNFWWEKNAKKREIPWIAW 1203
Query: 1248 EKMTLSKDEGGMGFREFRMQNLAILAKQAWRVLTNPEALWVCVLKSVYFPTSDFLNASLG 1307
+++ SK EGG+GFR+ N A+LAKQ WR++ NP +L+ ++K+ YF L+A
Sbjct: 1204 KRLQYSKKEGGLGFRDLAKFNDALLAKQVWRMINNPNSLFARIMKARYFREDSILDAKRQ 1263
Query: 1308 RNPSWMWRSLLAGRDFISRYIRWAVGGG 1335
R S+ W S+LAG D I + R+ VG G
Sbjct: 1264 RYQSYGWTSMLAGLDVIKKGSRFIVGDG 1291
>gb|AAB84340.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
thaliana] gi|7488322|pir||T00814 RNA-directed DNA
polymerase homolog At2g41580 - Arabidopsis thaliana
Length = 1094
Score = 570 bits (1470), Expect = e-160
Identities = 334/983 (33%), Positives = 513/983 (51%), Gaps = 36/983 (3%)
Query: 678 RIKSSKRTIWSWQRKTFKVAEKEIGRLKQELQSKQDRPNHLVDWNEVKNIKLEIDTLWRQ 737
R+ ++ I W+R+ A+ I +L++EL ++ W ++ ++ + +R+
Sbjct: 3 RLVECRKAISQWKRENDFNAKSRITKLRRELDKEKSAT--FPSWTQISLLQDVLGDAYRE 60
Query: 738 EELFWGQRSRVKWA*YGDKNSKFFHASTLKRRNRNRIDRVCDAQGTWKEGQTEVMHAFVS 797
EE FW +SR KW GDKNSKFF A+ R N + + D G + E V+
Sbjct: 61 EEDFWRLKSRDKWMVGGDKNSKFFQATVKANRVSNSLRFLVDENGNEQTVNREKGKIAVT 120
Query: 798 HYEEIFQSEGVNQIEDCLRGFPRKVTAELNNRLIMPASDAEIAEAVNLLGGLKAPGPDGL 857
+E++F S + ++ L GF ++VT ++N L ++ EI +AV + APGPDG
Sbjct: 121 FFEDLFSSSYPSSMDSVLEGFNKRVTEDMNQDLTKKVNEQEIYKAVFSINAESAPGPDGF 180
Query: 858 NGLFFKNHWATIQDSVCYAIKEFFST*NL*AEINETIVALVPKVDSPESVVQFRPISCCN 917
LFF+ W +++ + I+ FF T L + N T + L+PK+ P + RPIS C+
Sbjct: 181 TALFFQRQWPLVKNQIISDIELFFQTGILPEDWNHTHLCLIPKITKPARMADIRPISLCS 240
Query: 918 YILKVISRIMVTRLKDDLNLLISPNQSAFVGGRLIQDNITVSQEAFHLLQRGESRMKDYM 977
+ K+IS+I+ RLK L +++SP QSAFV RL+ DNI ++ E H L+ E KD+M
Sbjct: 241 VMYKIISKILSARLKKYLPVIVSPTQSAFVAERLVSDNIILAHEIVHNLRTNEKISKDFM 300
Query: 978 AIKVDMSKTYDRLEWTFLEKTLLAYGFHPIWTARVLTLVKGATYKLKVNGFLSSTLTPGR 1037
K DMSK YDR+EW FL+ LLA GF+ W ++ V +Y + +NG +TP R
Sbjct: 301 VFKTDMSKAYDRVEWPFLKGILLALGFNSTWINWMMACVSSVSYSVLINGQPFGHITPHR 360
Query: 1038 GLRQGDPLSPYLFVLATDVLSFMLTQAQRDGEISGFRFTPHSPPLTHLFFADDSLLFAEA 1097
GLRQGDPLSP+LFVL T+ L +L QA++ G+ISG +F P + HL FADD+LL +A
Sbjct: 361 GLRQGDPLSPFLFVLCTEALIHILNQAEKIGKISGIQFNGTGPSVNHLLFADDTLLICKA 420
Query: 1098 TVKEATSIIHILNLYNRASGQRINVAKSGLIFGRSASNRVKRDISNLLHMAIWDSPGQYL 1157
+ E I+H L+ Y SGQ IN KS + FG + K+ I N + G+YL
Sbjct: 421 SQLECAEIMHCLSQYGHISGQMINSEKSAITFGAKVNEETKQWIMNRSGIQTEGGTGKYL 480
Query: 1158 GLPAIWGRNKCHSLAWIEERVKEKLEGWKETLLNQAGKEVLIKAIIQAIPLYAMAMVHFP 1217
GLP + +K +I+E+++ +L GW L+Q GK++L+K+I A P+YAM
Sbjct: 481 GLPECFQGSKQVLFGFIKEKLQSRLSGWYAKTLSQGGKDILLKSIAMAFPVYAMTCFRLS 540
Query: 1218 KTFCNSLNSLVANFWWKGQGKDRGIHWRSWEKMTLSKDEGGMGFREFRMQNLAILAKQAW 1277
KT C L S++ +FWW + IHW +K+ L K GG GF++ + N A+LAKQA
Sbjct: 541 KTLCTKLTSVMMDFWWNSVQDKKKIHWIGAQKLMLPKFLGGFGFKDLQCFNQALLAKQAS 600
Query: 1278 RVLTNPEALWVCVLKSVYFPTSDFLNASLGRNPSWMWRSLLAGRDFISRYIRWAVGGGLL 1337
R+ T+ ++L +LKS Y+ SDFL+A+ G PS+ W+S+L GR+ + ++ +G G
Sbjct: 601 RLHTDSDSLLSQILKSRYYMNSDFLSATKGTRPSYAWQSILYGRELLVSGLKKIIGNGEN 660
Query: 1338 IEVWGDNWLSSGE----ALIQPHNAPDMKVSELISPHGEGWNSALVRSLFQ-PELALKVL 1392
VW DNW+ + +Q +KVS+LI P WN ++R LF E+ +
Sbjct: 661 TYVWMDNWIFDDKPRRPESLQIMVDIQLKVSQLIDPFSRNWNLNMLRDLFPWKEIQIICQ 720
Query: 1393 QTPVSKLNQTDVLFWPHTPKGDYTVSSGFEIARSNSIKPQALSSRSHNIPELLWRTIWKS 1452
Q P++ ++ D W T G YTV S +++ K + L+ IW
Sbjct: 721 QRPMA--SRQDSFCWFGTNHGLYTVKSEYDLCSRQVHKQMFKEAEEQPSLNPLFGKIWNL 778
Query: 1453 QLPQKVKVFLWKASHNSLAVKYNLWRKRILPSGQCPVCCEAQETVEHMFFVCPWTRAVWF 1512
K+KVFLWK ++AV+ L + +L C +C E ET+ H+ F CP R VW
Sbjct: 779 NSAPKIKVFLWKVLKGAVAVEDRLRTRGVLIEDGCSMCPEKNETLNHILFQCPLARQVWA 838
Query: 1513 GSSLQWVVSP-QGLGSFDVWLLQKITALQTISLDFNKDFS-----TLACILWSIWRGRNK 1566
+ +Q SP G G + + I N + S I+W +W+ RNK
Sbjct: 839 LTPMQ---SPNHGFGDSIFTNVNHV-----IGNCHNTELSPHLRYVSPWIIWILWKNRNK 890
Query: 1567 AVFNAIRPDPTFAIQQVASTLSAIDLAKPVTEKVISDGNQNTNQRPT---AWRPPFGNLL 1623
+F I + +LS + A ++ + ++ PT W PP N L
Sbjct: 891 RLFEGIG----------SVSLSIVGKALEDCKEWLKAHELICSKEPTKDLTWIPPLMNEL 940
Query: 1624 KINVDASWVSSVPQSAVGVLIRD 1646
K N+ +W + V ++R+
Sbjct: 941 KCNIGIAWSKKHQMAGVSWVVRN 963
>gb|AAX95232.1| retrotransposon protein, putative, unclassified [Oryza sativa
(japonica cultivar-group)] gi|62733010|gb|AAX95129.1|
retrotransposon protein, putative, unclassified [Oryza
sativa (japonica cultivar-group)]
Length = 1324
Score = 561 bits (1447), Expect = e-158
Identities = 299/870 (34%), Positives = 477/870 (54%), Gaps = 12/870 (1%)
Query: 401 MMILSWNCRGVAATPTGRELRTLCSKNKPTIVFLMETRSKKENLEVIRRSLGFDYLFTVN 460
M I++WNCRG+ PT R L L ++ P I+FL T+ L+ R LG L +
Sbjct: 448 MKIIAWNCRGLGNGPTVRGLLNLQKEDDPDILFLSNTKMDTNKLQCFRWKLGMPNLVVKD 507
Query: 461 PRGLSGGLALFWKREVHIQILHSSQNYIHTSIFANNSVSDWDCTFVYGDPSSQRRRFLWP 520
+G SGGLA+FWK+E+++++ S+ ++ + ++ W T VYG+P S ++ W
Sbjct: 508 CQGKSGGLAVFWKKEINLRLRTVSRLFMDVDVMEDDGFW-WRFTGVYGEPRSDKKDLTWK 566
Query: 521 QITALRFRDNTPWCLLGDFNEILFAHEKEGMRPQPPSVLQRFREFVHNSGLMDVDLKGSR 580
+ L W +GDFNE+LF+ EKE + S + RFR+ + L ++ G
Sbjct: 567 ALRTLNATKGELWLCVGDFNEVLFSWEKERGHAKAQSCMDRFRQTLDCCSLSNLGFTGDP 626
Query: 581 FTWHSN--PRDGFVTREKIDRVLTNWSWRNIFPNASAMAYPQISSDHSPILLDLSPPT-W 637
FTW +N RDG++ RE++DR + + W FP+ SDH P+++ S W
Sbjct: 627 FTWRNNWCVRDGYI-RERLDRAVADSDWCCRFPSFRVRKGDPRHSDHHPVIVTTSNEVIW 685
Query: 638 ----SKTPFKYEVFWDEHEQCSEVVAEGWLKPLHNEDCWKDLENRIKSSKRTIWSWQRKT 693
SK F++E W E C+ +V W + + + I+ +W W +
Sbjct: 686 NGGRSKPGFRFEAGWAREEHCAPIVENAWKLSVGPRG--GKVMDAIREVAANLWDWSKNF 743
Query: 694 FKVAEKEIGRLKQELQSKQDRPNHLVDWNEVKNIKLEIDTLWRQEELFWGQRSRVKWA*Y 753
EK I + KQ L++ + P + +K +D L Q EL+W QR+ W
Sbjct: 744 LGDLEKRIKKAKQALEAHRRSPISSSTASREAVLKYRLDKLEEQRELYWRQRANQHWLEK 803
Query: 754 GDKNSKFFHASTLKRRNRNRIDRVCDAQGTWKEGQTEVMHAFVSHYEEIFQSEGVNQIED 813
GD+N+KFFH +R+ RN+I ++ G + + Y+++F + +++
Sbjct: 804 GDRNTKFFHECASERKKRNKIKKLRRDDGEVITDEAGSLSLISEFYKQLFTAGVPLNLDE 863
Query: 814 CLRGFPRKVTAELNNRLIMPASDAEIAEAVNLLGGLKAP-GPDGLNGLFFKNHWATIQDS 872
L+ P++VT+ +N+ L+ + EI +A++ +G LKAP G DG+ LF+K W + D
Sbjct: 864 LLQNVPKRVTSTMNDELMKGVTTEEIKKALDSIGDLKAPPGSDGMPALFYKQFWECVGDD 923
Query: 873 VCYAIKEFFST*NL*AEINETIVALVPKVDSPESVVQFRPISCCNYILKVISRIMVTRLK 932
+ + +K+F + N+T+V L+PKV +PE + RPIS CN + K+ S+++ RLK
Sbjct: 924 IVHEVKDFLGGGEMPDSWNDTVVVLIPKVPNPERIKDLRPISLCNVVYKIASKVLANRLK 983
Query: 933 DDLNLLISPNQSAFVGGRLIQDNITVSQEAFHLLQRGESRMKDYMAIKVDMSKTYDRLEW 992
L+ +ISP Q AFV R+I DNI ++ E H L+ + A+K MSK YDR+EW
Sbjct: 984 PLLSEIISPIQIAFVPQRMITDNILLAYELTHFLKTKRRGSVGFAAVKQGMSKAYDRVEW 1043
Query: 993 TFLEKTLLAYGFHPIWTARVLTLVKGATYKLKVNGFLSSTLTPGRGLRQGDPLSPYLFVL 1052
FLEK +L GF W V+ V TY++KVNG + + P GLRQGDP+SPYLF +
Sbjct: 1044 GFLEKMMLKLGFDRNWVFIVMKCVTSVTYRIKVNGEFTEQINPTGGLRQGDPISPYLFFI 1103
Query: 1053 ATDVLSFMLTQAQRDGEISGFRFTPHSPPLTHLFFADDSLLFAEATVKEATSIIHILNLY 1112
+ S +L A+ G++S + ++P + HL FADDSLL + A + ++L+LY
Sbjct: 1104 CAEGFSTLLNAAEERGDLSVIKVCQNAPSINHLLFADDSLLLLKTDEGSAACLQNVLSLY 1163
Query: 1113 NRASGQRINVAKSGLIFGRSASNRVKRDISNLLHMAIWDSPGQYLGLPAIWGRNKCHSLA 1172
R SG+ IN KS ++F R+ K+ L + + +YLGLP GR+K + +
Sbjct: 1164 ERCSGETINKEKSSIMFSRNIKEVNKQIFMGALDIGVGAWNEKYLGLPVYMGRSKAKTSS 1223
Query: 1173 WIEERVKEKLEGWKETLLNQAGKEVLIKAIIQAIPLYAMAMVHFPKTFCNSLNSLVANFW 1232
+++ERV +K++GWKE LL++AGK+VLIKA+ QAIP +AM+ + K C+ + SL+ F+
Sbjct: 1224 YLKERVWKKIQGWKEKLLSRAGKDVLIKAVAQAIPAFAMSCFNLTKGLCDEITSLICRFF 1283
Query: 1233 WKGQGKDRGIHWRSWEKMTLSKDEGGMGFR 1262
W Q ++ +HW +WE + K++GG FR
Sbjct: 1284 WAQQERENKMHWIAWEHLCSRKEKGGFFFR 1313
Database: nr
Posted date: Jul 5, 2005 12:34 AM
Number of letters in database: 863,360,394
Number of sequences in database: 2,540,612
Lambda K H
0.334 0.144 0.487
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,007,149,891
Number of Sequences: 2540612
Number of extensions: 126063920
Number of successful extensions: 497964
Number of sequences better than 10.0: 1211
Number of HSP's better than 10.0 without gapping: 737
Number of HSP's successfully gapped in prelim test: 474
Number of HSP's that attempted gapping in prelim test: 493796
Number of HSP's gapped (non-prelim): 2132
length of query: 1771
length of database: 863,360,394
effective HSP length: 142
effective length of query: 1629
effective length of database: 502,593,490
effective search space: 818724795210
effective search space used: 818724795210
T: 11
A: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 39 (21.6 bits)
S2: 83 (36.6 bits)
Lotus: description of TM0288.7