BLAST2 result
BLASTP 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TM0281a.3
(1430 letters)
Database: nr
2,540,612 sequences; 863,360,394 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAF13073.1| putative retroelement pol polyprotein [Arabidopsi... 1132 0.0
dbj|BAB03109.1| retroelement pol polyprotein [Arabidopsis thalia... 921 0.0
ref|NP_908831.1| putative polyprotein [Oryza sativa (japonica cu... 907 0.0
emb|CAE05990.1| OSJNBa0004L19.22 [Oryza sativa (japonica cultiva... 902 0.0
gb|AAV24812.1| putative polyprotein [Oryza sativa (japonica cult... 885 0.0
ref|XP_470219.1| Putative retroelement [Oryza sativa] gi|1545160... 857 0.0
gb|AAL68644.1| polyprotein [Oryza sativa (japonica cultivar-group)] 689 0.0
ref|XP_474255.1| OSJNBa0087O24.13 [Oryza sativa (japonica cultiv... 626 e-177
gb|AAF79797.1| T32E20.30 [Arabidopsis thaliana] 578 e-163
gb|AAO23078.1| polyprotein [Glycine max] 521 e-146
ref|NP_917151.1| putative retroelement pol polyprotein [Oryza sa... 485 e-135
ref|XP_471847.1| OSJNBb0062H02.17 [Oryza sativa (japonica cultiv... 474 e-131
gb|AAP53789.1| hypothetical protein [Oryza sativa (japonica cult... 471 e-130
emb|CAE01900.2| OSJNBa0059D20.8 [Oryza sativa (japonica cultivar... 470 e-130
gb|AAG51464.1| gypsy/Ty3 element polyprotein, putative [Arabidop... 466 e-129
gb|AAL75999.1| putative polyprotein [Zea mays] 466 e-129
gb|AAP54661.1| putative plant disease resistance polyprotein [Or... 464 e-129
gb|AAP52878.1| putative retroelement [Oryza sativa (japonica cul... 459 e-127
ref|NP_908986.1| putative polyprotein [Oryza sativa (japonica cu... 454 e-125
gb|AAP54595.1| putative gag-pol polyprotein [Oryza sativa (japon... 454 e-125
>gb|AAF13073.1| putative retroelement pol polyprotein [Arabidopsis thaliana]
Length = 1661
Score = 1132 bits (2929), Expect = 0.0
Identities = 606/1416 (42%), Positives = 879/1416 (61%), Gaps = 46/1416 (3%)
Query: 1 RKLEIPIFSGDDAVGWTQKLERYFAMREVTEDERMQATMVALEGRALSWFQWWERCNPSP 60
R ++ P + G +A W +LE+ F E+E+++ + L G +++W++ +
Sbjct: 229 RTVDYPAYEGGNADDWLFRLEQCFLSNRTLEEEKLEKAVSCLTGASVTWWRCSKDREQIY 288
Query: 61 TWEAFKLAVVRRFQPSMIQNPFELLLSLKQVGTVDEYVEEFEKYAGALKEIDHDFVRGIF 120
TW F+ + RF+PS + + LL+++Q GTV+EY E FE+ L + D + F
Sbjct: 289 TWREFQEKFMLRFRPSRGSSAVDHLLNVRQTGTVEEYRERFEELTVDLPHVTSDILESAF 348
Query: 121 LNGLKEEIKAEV---RLIQKSLLIEQKNQIVTKKGVGFTRPSSAFRNNNYSKVVTVEPQN 177
LNGL+ ++ +V R + + ++E I +++ R + +++ N ++ T P N
Sbjct: 349 LNGLRRSLRDQVVRCRPVNLADIVEIAKLIESQE-----RNAVSYQVRNQARTNTA-PFN 402
Query: 178 NT----DQKQDSSSVGSVAMPSRNNAGIDSSRNRGGEFKHLTGAQMREKRDKNLCFRCDE 233
N + D + +PSR D++R G E R+ N C C +
Sbjct: 403 NQVSTGSRVVDRAPTRQPFIPSR-----DTTRASGSG----------EARNSNPCRYCGD 447
Query: 234 PYSREHKCRNKQLRMIIMEDDDDADCG---EFEDALSGEFNSLQ-------LSLCSMAGL 283
+ + HKC+ ++L+ + + ++ + + E + L+ E + ++L S+
Sbjct: 448 RWFQGHKCKPQKLKGLAITEEVEEESPLIEELNEPLTEEEGDPEPAEGFKVMTLSSLNDE 507
Query: 284 TSTKSWKMVGQIGNQSIVVLIDCGASHNFISHKLVEQLNLTVAETQTYTVEVGDGYKIRC 343
+ +S KM G IGN +V+L+D GA+ NFIS LV + V +T+++ V+VG G I+
Sbjct: 508 SQEQSMKMRGYIGNTKVVLLVDSGATCNFISEALVREKGWLVTQTRSFGVKVGGGRIIKS 567
Query: 344 KGKCSQLGIMIQALEIVQNFYLFGLNGMDVVLGIEWLASLGDIKANFGKMELTLKRGKEV 403
GKC + + +Q +E VQ++YLF L +D+VLG WLA LG+ +AN+ + ++ + G+
Sbjct: 568 SGKCVDIPLEVQGIEFVQDYYLFDLGDLDLVLGFSWLAGLGETRANWRDLRISWQIGRTW 627
Query: 404 YTLKGDPSLTKSELSYGALMQILLEEGEGLLVHCDT--GEKVNKKECEIPEIITGVLLQF 461
+L GDP L + ++S ++ +++ G L+ + K +++ + I +L Q+
Sbjct: 628 VSLYGDPDLCRGQISMRSMERVIKYTGTAYLLELASLFESKKQEEQTALQPAIQRLLDQY 687
Query: 462 DTVFQDPQGLPPRRRHDHAIHLKEGAQVPNLRPYKCPHYQKNEVEKLVAEMLEAGVIRPS 521
VFQ PQ LPP R +HAI L+EG+ N+RPY+ QKNE+EKLV EML A +IRPS
Sbjct: 688 QGVFQTPQLLPPVRNREHAITLQEGSSPVNIRPYRYSFAQKNEIEKLVREMLNAQIIRPS 747
Query: 522 ISPFSSPIILVKKKDGGWRLCVDYRALNKVTIPNKFPIPIIEELLDELGGAKVFSKLDLK 581
+SP+SSP++LVKKKDGGWR CVDYRALN+ TIP+K+PIP+IEELLDEL GA VFSKLDLK
Sbjct: 748 VSPYSSPVLLVKKKDGGWRFCVDYRALNEATIPDKYPIPVIEELLDELKGATVFSKLDLK 807
Query: 582 SGYHQIRMKDADIEKTAFRTHEGHYEFLVMPFGLTNAPSTFQSLMNEVLKPYLRKFALVF 641
SGY QIRMK +D+EKTAF+THEGHYEFLVMPFGLTNAPSTFQS+MN++ +PYLRKF LVF
Sbjct: 808 SGYFQIRMKLSDVEKTAFKTHEGHYEFLVMPFGLTNAPSTFQSVMNDLFRPYLRKFVLVF 867
Query: 642 FDDILVYSPDLLTHTTHLQQVLTLLADHALKANRKKCSFGQTSLEYLGHIVSGEGGGC*P 701
FDDILVYSPD+ TH HL+ VL LL H AN KKC+FG T + YLGHI+S +G P
Sbjct: 868 FDDILVYSPDMKTHLKHLETVLQLLHLHQFYANFKKCTFGSTRISYLGHIISEQGVATDP 927
Query: 702 IKGGSYEGLANP*RYQGNEGVPRFDWLL*TLCQGLWENCKTLD*PSEERWVQLDRISNCS 761
K + P G F + + + L ++ + + +
Sbjct: 928 EKVEAMLQWPLPKSVTELRGFLGFTGYYRRFVKNYGQIARPLRDQLKKNSFDWNEAATSA 987
Query: 762 F*AFKNSHG*LASVSCARFYKTICG*D*CLQQRAWSCLDARGQTLAFWSQGLSPRAQHKS 821
F A K + L + F + + L + +AF SQ S + + +S
Sbjct: 988 FQALKAAVSALPVLVLPDFQQEFTVETDASGMGIGAVLSQNKRLIAFLSQAFSSQGRIRS 1047
Query: 822 VYERELMALVQAIQKWRHYLMGRHFIVRTDQKSLKFLTDQRLFS*DQFKWAVKLVGLDFE 881
VYEREL+A+V+A+ KW+HYL + FI++TDQ+SL+ L +Q+ S Q +WA KL GL +
Sbjct: 1048 VYERELLAIVKAVTKWKHYLSSKEFIIKTDQRSLRHLLEQKSVSTIQQRWASKLSGLKYR 1107
Query: 882 IQYKPGSENTVADALSRKMMYSALSILT-----SAEKEDWNSELQQDSKLVKVIQDLLIS 936
I+YKPG +N VADALSR+ ALS LT + + +E+QQD +L +++++
Sbjct: 1108 IEYKPGVDNKVADALSRRPPTEALSQLTITGPPTIDLTALKAEIQQDHELSQILKNWAQG 1167
Query: 937 PTSHPGFEFKKGLLYYKNRLVLSKASNRIPMIISECHDTPTGGHSGHFRTYKRIASFLYW 996
F GL+Y K LV+ S IP ++ + H +P GGH G +T+KR+ S +YW
Sbjct: 1168 DHHDSDFTVADGLIYRKGCLVIPVGSPFIPKMLEKFHTSPIGGHEGALKTFKRLTSEVYW 1227
Query: 997 EGMKTDIKNFVEDCEICQRSKYSTLAPGGLLQPLPIPTQVWMDISMDFVGGLPKVRGKDT 1056
G++ D+ N+++ C+ICQ +KYSTL+P GLL PLPIP Q+W D+S+DFV GLP +
Sbjct: 1228 RGLRKDVVNYIKGCQICQENKYSTLSPAGLLSPLPIPQQIWSDVSLDFVEGLPSSNRFNC 1287
Query: 1057 VLVVVDRLTKFAHFYALGHPYSAKDVAVLFIKELVKLHGFPTTIVSDRDPLFLSNFWKEL 1116
+LVVVDRL+K++HF L HP++AK V FI+++VKLHGFP T+VSDRD +FLS FW EL
Sbjct: 1288 ILVVVDRLSKYSHFIPLKHPFTAKTVVEAFIRDVVKLHGFPNTLVSDRDRIFLSGFWSEL 1347
Query: 1117 FKMAGTQLKLSTSYHPQTDGQTEVTNRCLETYLRCFVGPKPKQWLDWLPWAEFWFNTNYN 1176
FK+ GT L+ ST+YHPQTDGQTEV NRCLE+YLRCF G +P W WLPWAE+W+NT+Y+
Sbjct: 1348 FKLQGTGLQKSTAYHPQTDGQTEVVNRCLESYLRCFAGRRPTSWFQWLPWAEYWYNTSYH 1407
Query: 1177 SSAGMSPFKALYGRDPPLLLKAGAIPSRVEEVNQLFQQRDGVLGELKQNLLKAQHQMKVQ 1236
S+ +PF+A+YGR+PP+LL+ G IP+ V +L + RDG+L EL++NL AQ QMK
Sbjct: 1408 SATKTTPFQAVYGREPPVLLRYGDIPTNNANVEELLKDRDGMLVELRENLEIAQAQMKKA 1467
Query: 1237 ADKHRRLVEFNEGDWVYLKLQPYKLKSIATRPCAKLAPRFYGPYKILDRVGPVAYKLELP 1296
ADK RR V F +WVYLKL+PY+ S+A R KL+ R++GP+K+L R+G VAYKL+LP
Sbjct: 1468 ADKSRRDVAFEIDEWVYLKLRPYRQSSVAHRKNEKLSQRYFGPFKVLHRIGQVAYKLQLP 1527
Query: 1297 AHSKIHPVFHVSLLKQALKPTQQPQPLPPMLNEELELEVVPEDVIDHRE-DAQGNLEVLI 1355
HS IHPVFHVS LK+A+ P+ PQ LP +L+ LE PE ++D R+ + EVL+
Sbjct: 1528 EHSTIHPVFHVSQLKRAVPPSFTPQELPKILSPTLEWNTGPEKLLDIRQSNTNSGPEVLV 1587
Query: 1356 KWEQLPTCDNTWELAAVIQDKFPLFPLEDKVKLLGG 1391
+W L T ++TWE + ++P F LEDKV LL G
Sbjct: 1588 QWSGLSTLESTWEPLLTLVQQYPDFDLEDKVSLLRG 1623
>dbj|BAB03109.1| retroelement pol polyprotein [Arabidopsis thaliana]
gi|12322008|gb|AAG51046.1| gypsy/Ty-3 retroelement
polyprotein; 69905-74404 [Arabidopsis thaliana]
Length = 1499
Score = 921 bits (2380), Expect = 0.0
Identities = 521/1409 (36%), Positives = 785/1409 (54%), Gaps = 52/1409 (3%)
Query: 2 KLEIPIFSGDDAVGWTQKLERYFAMREVTEDERMQATMVALEGRALSWFQWWERCNPSPT 61
K++ P F G W K+E +F + ED +++ + + A +W Q + +
Sbjct: 111 KIDFPRFDGTRLKEWLFKVEEFFGVDSTPEDMKVKMAAIHFDSHASTWHQSFIQSGVGLE 170
Query: 62 ----WEAFKLAVVRRFQPSMIQNPFELLLSLKQVGTVDEYVEEFEKYAGALKEIDHDFVR 117
W+ + + RF+ +P L L++ + +Y ++FE + + +++
Sbjct: 171 VLYDWKGYVKLLKERFEDDC-DDPMAELKHLQETDGIIDYHQKFELIKTRVN-LSEEYLV 228
Query: 118 GIFLNGLKEEIKAEVRLIQKSLLIEQKNQIVTKKGVGFTRPSSAFRNNNYSKVVTVEPQN 177
++L GL+ + + VR+ Q T F Y K +P N
Sbjct: 229 SVYLAGLRTDTQMHVRMFQPQ-----------------TVRHCLFLGKTYEKAHPKKPAN 271
Query: 178 NTDQKQDSSSVGSVAMPSRNNAGIDSSRNRGGEFK-------HLTGAQMREKRDKNLCFR 230
T S+ G + G FK ++ +M ++R K LC+
Sbjct: 272 TTWSTNRSAPTGGYNKYQKEGESKTDHYGNKGNFKPVSQQPKKMSQQEMSDRRSKGLCYF 331
Query: 231 CDEPYSREHKCRNKQLRMIIMEDDDDADCGEFEDALSGEFNSLQLSLCSMAGLTSTKSWK 290
CDE Y+ EH +K+ ++ M+ D++ + E + + Q+S+ +++G+ K+ +
Sbjct: 332 CDEKYTPEHYLVHKKTQLFRMDVDEEFEDAREELVNDDDEHMPQISVNAVSGIAGYKTMR 391
Query: 291 MVGQIGNQSIVVLIDCGASHNFISHKLVEQLNLTVAETQTYTVEVGDGYKIRCKGKCSQL 350
+ G + I +LID G++HNF+ +L V V V DG K+R +GK +
Sbjct: 392 VKGTYDKKIIFILIDSGSTHNFLDPNTAAKLGCKVDTAGLTRVSVADGRKLRVEGKVTDF 451
Query: 351 GIMIQALEIVQNFYLFGLNGMDVVLGIEWLASLGDIKANFGKMELTLKRGKEVYTLKGDP 410
+Q + L L G+D+VLG++WL +LG I F K+E+ K + L G
Sbjct: 452 SWKLQTTTFQSDILLIPLQGIDMVLGVQWLETLGRISWEFKKLEMRFKFNNQKVLLHGLT 511
Query: 411 SLTKSELSYGALMQILLEEGEGLLVHC--DTGEKVNKKECEI---------PEIITGVLL 459
S + E+ L Q L E+ L + C + E + C I ++ VL
Sbjct: 512 SGSVREVKAQKL-QKLQEDQVQLAMLCVQEVSESTEGELCTINALTSELGEESVVEEVLN 570
Query: 460 QFDTVFQDPQGLPP-RRRHDHAIHLKEGAQVPNLRPYKCPHYQKNEVEKLVAEMLEAGVI 518
++ +F +P LPP R +H+H I L EG+ N RPY+ +QKNE++KLV ++L G +
Sbjct: 571 EYPDIFIEPTALPPFREKHNHKIKLLEGSNPVNQRPYRYSIHQKNEIDKLVEDLLTNGTV 630
Query: 519 RPSISPFSSPIILVKKKDGGWRLCVDYRALNKVTIPNKFPIPIIEELLDELGGAKVFSKL 578
+ S SP++SP++LVKKKDG WRLCVDYR LN +T+ + FPIP+IE+L+DELGGA +FSK+
Sbjct: 631 QASSSPYASPVVLVKKKDGTWRLCVDYRELNGMTVKDSFPIPLIEDLMDELGGAVIFSKI 690
Query: 579 DLKSGYHQIRMKDADIEKTAFRTHEGHYEFLVMPFGLTNAPSTFQSLMNEVLKPYLRKFA 638
DL++GYHQ+RM DI+KTAF+TH GH+E+LVMPFGLTNAP+TFQ LMN + KP+LRKF
Sbjct: 691 DLRAGYHQVRMDPDDIQKTAFKTHSGHFEYLVMPFGLTNAPATFQGLMNFIFKPFLRKFV 750
Query: 639 LVFFDDILVYSPDLLTHTTHLQQVLTLLADHALKANRKKCSFGQTSLEYLGHIVSGEGGG 698
LVFFDDILVYS L H HL+QV ++ + L A KC+F +EYLGH +S +G
Sbjct: 751 LVFFDDILVYSSSLEEHRQHLKQVFEVMRANKLFAKLSKCAFAVPKVEYLGHFISAQGIE 810
Query: 699 C*PIKGGSYEGLANP*RYQGNEGVPRFDWLL*TLCQGLWENCKTLD*PSEERWVQLDRIS 758
P K + + P + G + L ++ + ++
Sbjct: 811 TDPAKIKAVKEWPQPTTLKQLRGFLGLAGYYRRFVRSFGVIAGPLHALTKTDAFEWTAVA 870
Query: 759 NCSF*AFKNSHG*LASVSCARFYKTICG*D*CLQQRAWSCLDARGQTLAFWSQGLSPRAQ 818
+F K + +S F K Q + L G LA+ S+ L +
Sbjct: 871 QQAFEDLKAALCQAPVLSLPLFDKQFVVETDACGQGIGAVLMQEGHPLAYISRQLKGKQL 930
Query: 819 HKSVYERELMALVQAIQKWRHYLMGRHFIVRTDQKSLKFLTDQRLFS*DQFKWAVKLVGL 878
H S+YE+EL+A++ A++KWRHYL+ HFI++TDQ+SLK+L +QRL + Q +W KL+
Sbjct: 931 HLSIYEKELLAVIFAVRKWRHYLLQSHFIIKTDQRSLKYLLEQRLNTPIQQQWLPKLLEF 990
Query: 879 DFEIQYKPGSENTVADALSR----KMMYSALSILTSAEKEDWNSELQQDSKLVKVIQDLL 934
D+EIQY+ G EN VADALSR ++++ A++++ +D + DS+L +I L
Sbjct: 991 DYEIQYRQGKENVVADALSRVEGSEVLHMAMTVVECDLLKDIQAGYANDSQLQDIITALQ 1050
Query: 935 ISPTSHPGFEFKKGLLYYKNRLVLSKASNRIPMIISECHDTPTGGHSGHFRTYKRIASFL 994
P S F + + +L K+++V+ N I+ H + GGHSG T++R+
Sbjct: 1051 RDPDSKKYFSWSQNILRRKSKIVVPANDNIKNTILLWLHGSGVGGHSGRDVTHQRVKGLF 1110
Query: 995 YWEGMKTDIKNFVEDCEICQRSKYSTLAPGGLLQPLPIPTQVWMDISMDFVGGLPKVRGK 1054
YW+GM DI+ ++ C CQ+ K A GLLQPLPIP +W ++SMDF+ GLP GK
Sbjct: 1111 YWKGMIKDIQAYIRSCGTCQQCKSDPAASPGLLQPLPIPDTIWSEVSMDFIEGLPVSGGK 1170
Query: 1055 DTVLVVVDRLTKFAHFYALGHPYSAKDVAVLFIKELVKLHGFPTTIVSDRDPLFLSNFWK 1114
++VVVDRL+K AHF AL HPYSA VA ++ + KLHG PT+IVSDRD +F S FW+
Sbjct: 1171 TVIMVVVDRLSKAAHFIALSHPYSALTVAHAYLDNVFKLHGCPTSIVSDRDVVFTSEFWR 1230
Query: 1115 ELFKMAGTQLKLSTSYHPQTDGQTEVTNRCLETYLRCFVGPKPKQWLDWLPWAEFWFNTN 1174
E F + G LKL+++YHPQ+DGQTEV NRCLETYLRC +P+ W WL AE+W+NTN
Sbjct: 1231 EFFTLQGVALKLTSAYHPQSDGQTEVVNRCLETYLRCMCHDRPQLWSKWLALAEYWYNTN 1290
Query: 1175 YNSSAGMSPFKALYGRDPPLLLKAGAIPSRVEEVNQLFQQRDGVLGELKQNLLKAQHQMK 1234
Y+SS+ M+PF+ +YG+ PP+ L S+V V + Q+R+ +L LK +L++AQH+MK
Sbjct: 1291 YHSSSRMTPFEIVYGQVPPVHLPYLPGESKVAVVARSLQEREDMLLFLKFHLMRAQHRMK 1350
Query: 1235 VQADKHRRLVEFNEGDWVYLKLQPYKLKSIATRPCAKLAPRFYGPYKILDRVGPVAYKLE 1294
AD+HR EF GD+VY+KLQPY+ +S+ R KL+P+++GPYKI+DR G VAYKL
Sbjct: 1351 QFADQHRTEREFEIGDYVYVKLQPYRQQSVVMRANQKLSPKYFGPYKIIDRCGEVAYKLA 1410
Query: 1295 LPAHSKIHPVFHVSLLKQALKPTQQPQPLPPMLNEELELEVVPEDVIDHR---EDAQGNL 1351
LP++S++HPVFHVS LK + LP ++ + E VPE V++ + +
Sbjct: 1411 LPSYSQVHPVFHVSQLKVLVGNVSTTVHLPSVMQD--VFEKVPEKVVERKMVNRQGKAVT 1468
Query: 1352 EVLIKWEQLPTCDNTWELAAVIQDKFPLF 1380
+VL+KW P + TWE +Q FP F
Sbjct: 1469 KVLVKWSNEPLEEATWEFLFDLQKTFPEF 1497
>ref|NP_908831.1| putative polyprotein [Oryza sativa (japonica cultivar-group)]
Length = 1522
Score = 907 bits (2344), Expect = 0.0
Identities = 541/1417 (38%), Positives = 778/1417 (54%), Gaps = 87/1417 (6%)
Query: 2 KLEIPIFSGDDAVGWTQKLERYFAMREVTEDERMQATMVALEGRALSWFQWWERCNPSPT 61
K++ P F G D W E YFA+ ++TE ++ A + + G A W+Q W++ PT
Sbjct: 130 KMDFPKFDGTDVCVWVDNCETYFALYQITEGFKVSAASLNMIGDAAHWYQAWKQERGWPT 189
Query: 62 WEAFKLAVVRRFQPSMIQNPFELLLSLKQVGTVDEYVEEFEKYAGALKEIDHD----FVR 117
WE + AV+ F+ ++ + E LL L Q GTV EY +F + ++ D F+
Sbjct: 190 WEQLREAVLNEFEINIKRAKMEELLLLTQTGTVSEYRSKFLQLVYHIRLYDPATSGLFLV 249
Query: 118 GIFLNGLKEEIKAEVRLIQKSLLIEQKNQIVTKKGVGFTRPSSAFRNNNYSKVVTVEPQN 177
F+ GLK+E++ V Q+ + Q ++ F AF+ +
Sbjct: 250 SRFVMGLKDELRCFVAA-QEPETVHQAARVALAFEGAFCNRKVAFKKD------------ 296
Query: 178 NTDQKQDSSSVGSVAMPSRNNAGIDSSRNRGGEFKHLTGAQMRE-KRDKNLCFRCDEPYS 236
VG+V + + G +K Q++E +R LCF+C E YS
Sbjct: 297 ----------VGNVKFGDKGKVPV------GDLWK---AQQLKEYRRTHGLCFKCGEKYS 337
Query: 237 REHKC---RNKQLRMIIMEDDDDADCGEFEDALSG----EFNSLQLSLCSMAGLTSTKSW 289
H C QL+ + + DD E D ++ +++ LSL ++AG ++T S
Sbjct: 338 PAHTCGKTEGAQLKTMEVSSSDDVLTDEILDVVTAFEQLPDDNMLLSLQAVAGTSATHSL 397
Query: 290 KMVGQIGNQSIVVLIDCGASHNFISHKLVEQLNLTVAETQTYTVEVGDGYKIRCKGKCSQ 349
++ GNQ +++L+D G+SH+FI+ L +LNL+ TV+V +G ++C+ + S+
Sbjct: 398 QLRALAGNQVVIILVDSGSSHSFINADLCSKLNLSTDPIPVSTVKVANGETLQCEAQVSE 457
Query: 350 LGIMIQALEIVQNFYLFGLNGMDVVLGIEWLASLGDIKANFGKMELTLKRGKEVYTLKGD 409
IQ V + + + G D+VLG++WL+ + N+ L ++ L+G
Sbjct: 458 FSWWIQGCTFVSSLKVLSMGGHDIVLGMDWLSKFSPMTCNWADRWLEFTYQGKLVKLQGI 517
Query: 410 PSLTKSELSYGALMQILLEEGEGLLVHCDTGEKVNKKECE--IPEIITGVLLQFDTVFQD 467
S LS + Q++ + + + ++ C+ +P I VL ++ +VFQ
Sbjct: 518 QSHQLQYLSEVSSDQMMKWQVGNDIWALAVVDCLSSPLCDSAVPASIQDVLQKYSSVFQP 577
Query: 468 PQGLPPRRRHDHAIHLKEGAQVPNLRPYKCPHYQKNEVEKLVAEMLEAGVIRPSISPFSS 527
GLPP R DH+I L GA N RPY+ QK+E+EK V EMLE+G+I S SPF+S
Sbjct: 578 SAGLPPHRELDHSIPLVPGAIPVNSRPYRYSPAQKDEIEKQVQEMLESGLISRSCSPFAS 637
Query: 528 PIILVKKKDGGWRLCVDYRALNKVTIPNKFPIPIIEELLDELGGAKVFSKLDLKSGYHQI 587
P++LVKKKD WR CVDYR LN +TI NKFP+PI++ELLDEL G + FSKLDL+SGYHQI
Sbjct: 638 PVLLVKKKDNTWRFCVDYRRLNAITIKNKFPLPIVDELLDELAGTRFFSKLDLRSGYHQI 697
Query: 588 RMKDADIEKTAFRTHEGHYEFLVMPFGLTNAPSTFQSLMNEVLKPYLRKFALVFFDDILV 647
RMK+ D EKTAF+TH GH++F VMPFGLTNAP+TFQ LMN + +PYLRKF LVF DDILV
Sbjct: 698 RMKETDEEKTAFKTHHGHFQFRVMPFGLTNAPATFQCLMNSIFEPYLRKFVLVFMDDILV 757
Query: 648 YSPDLLTHTTHLQQVLTLLADHALKANRKKCSFGQTSLEYLGHIVSGEGGGC*PIKGGSY 707
YSP L TH HL VL +L H L A KCSF + LEYLGHI+S +G P K
Sbjct: 758 YSPSLETHAIHLDTVLQVLQQHQLSAKLSKCSFAASQLEYLGHIISADGVATDPEKTRIM 817
Query: 708 EGLANP*RYQGNEG-----------VPRFDWLL*TLCQGLWENCKTLD*PSEERWVQLDR 756
P G V + + L L +N K + W
Sbjct: 818 RDWPVPTNVTELRGFLGLTGYYRKFVKNYGVIAKPLTVLLQKNAKFI-------WTDS-- 868
Query: 757 ISNCSF*AFKNSHG*LASVSCARFYKTICG*D*CLQQRAWSCLDARGQTLAFWSQGLSPR 816
+N +F K++ ++ F KT + L G +AF+S+ L
Sbjct: 869 -ANSAFLQLKHAMCSTPVLALPDFTKTFVLETDACATGIGAVLSQEGHPIAFYSKALGMA 927
Query: 817 AQHKSVYERELMALVQAIQKWRHYLMGRHFIVRTDQKSLKFLTDQRLFS*DQFKWAVKLV 876
Q S+YE+E +A++ AI KWR YL+ F ++TD +SL L DQ L S Q K KL+
Sbjct: 928 NQKLSIYEKEFLAIMMAIDKWRSYLLRGPFTIKTDHQSLCHLDDQILGSELQRKAMTKLI 987
Query: 877 GLDFEIQYKPGSENTVADALSRKMMYSALSILTSAEKEDWNSELQQ----DSKLVKVIQD 932
GL ++ QYK G +N ADALSR L S W E+ D+ +++ +
Sbjct: 988 GLQYKFQYKRGVDNKSADALSR---VGHLFATVSGPYPKWIQEVVNSYATDADAQQLLTE 1044
Query: 933 LLISPTSHPGFEFKKGLLYYKNRLVLSKASNRIPMIISECHDTPTGGHSGHFRTYKRIAS 992
L +S + GF GL+ +++ + S +I+ H +P GGHSG TY R+
Sbjct: 1045 LAVSSPNDKGFMLSGGLIKKHDKIWVGANSGLQSKLIAVFHSSPIGGHSGIHATYHRLKK 1104
Query: 993 FLYWEGMKTDIKNFVEDCEICQRSKYSTLAPGGLLQPLPIPTQVWMDISMDFVGGLPKVR 1052
W GMK ++ FV+ C +CQ++K+ GLLQPLPIP W DISMDF+ GLP +
Sbjct: 1105 LFVWTGMKQAVEEFVQQCGVCQQAKHEHCKYPGLLQPLPIPEGSWQDISMDFIEGLPLSK 1164
Query: 1053 GKDTVLVVVDRLTKFAHFYALGHPYSAKDVAVLFIKELVKLHGFPTTIVSDRDPLFLSNF 1112
G +T+LVVVDR TK+AHF +L HP+SA VA LF+ + +L+G P +IVSDRD +F S+F
Sbjct: 1165 GANTILVVVDRFTKYAHFLSLKHPFSASQVAELFLDRVAQLYGMPKSIVSDRDRVFTSSF 1224
Query: 1113 WKELFKMAGTQLKLSTSYHPQTDGQTEVTNRCLETYLRCFVGPKPKQWLDWLPWAEFWFN 1172
WK LF G L +ST+YHPQ+DGQTE N+CLE YLRC V P +W WLP A+FW+N
Sbjct: 1225 WKTLFARFGIPLNMSTAYHPQSDGQTERVNQCLEMYLRCAVANTPSKWASWLPLAQFWYN 1284
Query: 1173 TNYNSSAGMSPFKALYGRD------PPLLLKAGAIPSRVEEVNQLFQQRDGVLGELKQNL 1226
T++++S SP KALYG D P L ++A S ++ L + R L+ +L
Sbjct: 1285 TSFHTSLKCSPHKALYGSDPSYGLLPSLSVEASDESSSSKDATALLKARSFYSSTLQHHL 1344
Query: 1227 LKAQHQMKVQADKHRRLVEFNEGDWVYLKLQPYKLKSIATRPCAKLAPRFYGPYKILDRV 1286
+AQ+ MK AD R L F GD V+LKLQPY S+ RPC KLA +++GP+ IL+RV
Sbjct: 1345 ARAQNHMKQVADSKRTLRVFQVGDSVFLKLQPYAQTSVVNRPCHKLAMKYFGPFPILERV 1404
Query: 1287 GPVAYKLELPAHSKIHPVFHVSLLKQALKPTQQP--QPLPPMLNEELELEVVPEDVIDHR 1344
G VAYKL+LP S++H VFHVS LK ++ P+ P LP ++ ++E +++P +++D R
Sbjct: 1405 GSVAYKLQLPPASQVHSVFHVSQLKPSV-PSHVPVYTSLPDVVALDVE-DLIPTEILDCR 1462
Query: 1345 EDAQGN---LEVLIKWEQLPTCDNTWELAAVIQDKFP 1378
+GN ++V ++W LP TWE VI+ +FP
Sbjct: 1463 MVKKGNAAIVQVRVRWGSLPDNMATWEDYDVIRTRFP 1499
>emb|CAE05990.1| OSJNBa0004L19.22 [Oryza sativa (japonica cultivar-group)]
Length = 1586
Score = 902 bits (2330), Expect = 0.0
Identities = 527/1421 (37%), Positives = 785/1421 (55%), Gaps = 85/1421 (5%)
Query: 2 KLEIPIFSGDDAVGWTQKLERYFAMREVTEDERMQATMVALEGRALSWFQW----WERCN 57
+LEIP+FSG+D + W ++ E+++ + ++ + + L+G+A+ W++ W+
Sbjct: 207 RLEIPLFSGEDPIDWLKQCEKFYEISGTPAEQWVNLAIAHLQGKAMKWYRGIGIPWQLI- 265
Query: 58 PSPTWEAFKLAVVRRFQPSMIQNPFELLLSLKQVG-TVDEYVEEFEKYAGALKE----ID 112
TW + V RF + EL ++KQ TV++Y+++FE+Y ++ +
Sbjct: 266 ---TWPQWCAMVSTRFSAADTHEAVELFQNVKQYNQTVEQYIDKFEEYVDLVRREHPYLQ 322
Query: 113 HDFVRGIFLNGLKEEIKAEVRLIQKSLLIEQKNQIVTKKGVGFTRPSSAFRNNNYSKVVT 172
++ F+ GL+ +IK +V + L+E S + NY +
Sbjct: 323 EQYLNSCFIGGLRGDIKHDVCGHKPQGLLE-----------------SYWYTKNYERAAN 365
Query: 173 VEPQN-NTDQKQDSSSVGSVAMPSRNNAGIDSSRNRGGEFKHLTGAQMREKRDKNLCFRC 231
N ++ + + G + RN NRG + + EK+++ C+ C
Sbjct: 366 ARKNLLNFNRNRFQNQAGPIQ--GRNVV------NRGQPREQV------EKKEERKCWFC 411
Query: 232 DEPYSREHKCR-NKQLRMIIMEDDDDADCGEF--------------EDALSGEFNSLQLS 276
EP+ +H+C+ K L ++ME ++ D GE E+A + N +L
Sbjct: 412 KEPWFPKHQCKVKKALNALLMEGEEGKDEGEEGELTGNQEDCKLEKEEAPPDDENQEELM 471
Query: 277 LCS---MAGLTSTKSWKMVGQIGNQSIVVLIDCGASHNFISHKLVEQLNLTVAETQTYTV 333
S + G T ++ ++ QI + V L+D G++ F+ + + + T V
Sbjct: 472 FVSHNAVYGTTRPDTFSVIIQINGRRAVGLVDSGSTSTFMDQDYAVRNHCPLVSTDAKKV 531
Query: 334 EVGDGYKIRCKGKCSQLGIMIQALEIVQNFYLFGLNGMDVVLGIEWLASLGDIKANFGKM 393
V G +++ + + +L IQ F + L G DV+LG +W+ I + K
Sbjct: 532 VVAGGGELKSEVQVPELVYQIQGETFSNKFNIIPLKGYDVILGADWIYKYSPITLDLKKR 591
Query: 394 ELTLKRGKEVYTLKGDPSLTKSE-LSYGALMQILLEEGEGLLVHCDTGEKVNKKECEIPE 452
EL + +G++ ++ K + + QIL + G G L T K + EIPE
Sbjct: 592 ELGITKGEKTVVIQDFTRPGKHLWVDSKKVDQILRKGGLGCLFQI-TRVKEEETSHEIPE 650
Query: 453 IITGVLLQFDTVFQDPQGLPPRRRHDHAIHLKEGAQVPNLRPYKCPHYQKNEVEKLVAEM 512
I +L +F V +DP+GLPPRR DH I LK GA+ PNLRPY+ PHYQK +EK++AE+
Sbjct: 651 DIKEILQEFPAVLKDPKGLPPRRNCDHVITLKSGAEPPNLRPYRVPHYQKEAMEKIIAEL 710
Query: 513 LEAGVIRPSISPFSSPIILVKKKDGGWRLCVDYRALNKVTIPNKFPIPIIEELLDELGGA 572
+E+ I+ S P+SSP ++V+KKDG WRLCVDYR LN T+ NKFP+PIIE+LLDEL GA
Sbjct: 711 IESKEIQVSDIPYSSPAVMVRKKDGSWRLCVDYRQLNAQTVKNKFPMPIIEDLLDELNGA 770
Query: 573 KVFSKLDLKSGYHQIRMKDADIEKTAFRTHEGHYEFLVMPFGLTNAPSTFQSLMNEVLKP 632
KVFSKLDL+SGYHQIRM DI KTAFRTH GHYE+ VMPFGLTNAP+TFQSLMN+VL P
Sbjct: 771 KVFSKLDLRSGYHQIRMATQDIPKTAFRTHLGHYEYQVMPFGLTNAPTTFQSLMNQVLAP 830
Query: 633 YLRKFALVFFDDILVYSPDLLTHTTHLQQVLTLLADHALKANRKKCSFGQTSLEYLGHIV 692
+LRK+ LVFFDDIL+YS D H H++QV+ +L ++ L KKC+FG S+ YLGHI+
Sbjct: 831 FLRKYVLVFFDDILIYSKDWAEHKEHIRQVMKVLEENKLVVKLKKCAFGLPSVTYLGHII 890
Query: 693 SGEGGGC*PIKGGSYEGLANP*------RYQGNEGVPRFDWLL*TLCQGLWENCKTLD*P 746
S +G P K P ++ G G R + C+ L
Sbjct: 891 SQDGVATDPKKVEKIATYPTPKSVTDLRKFLGMTGYYR------RFIKNYGIVCRPLHDM 944
Query: 747 SEERWVQLDRISNCSF*AFKNSHG*LASVSCARFYKTICG*D*CLQQRAWSCLDARGQTL 806
++ Q +R +F K +S F K + L G+ L
Sbjct: 945 LKKEGFQWEREQTEAFETLKTHMCTSPVLSLPDFTKEFVIEADACGNGIGAVLMQSGRPL 1004
Query: 807 AFWSQGLSPRAQHKSVYERELMALVQAIQKWRHYLMGRHFIVRTDQKSLKFLTDQRLFS* 866
A++S+ L P+A +S+YE+E MA+++A++KWRHY++G I++TDQ+SLKF+ +QRL
Sbjct: 1005 AYFSKTLGPKAAAQSIYEKEAMAILEALKKWRHYVLGSRLIIKTDQQSLKFMMNQRLVEG 1064
Query: 867 DQFKWAVKLVGLDFEIQYKPGSENTVADALSRKMMYSALSILTSAEKEDWNSELQQ---- 922
Q K +KL+ D+ I+YK G EN VADALSR +T+ E W ++Q+
Sbjct: 1065 IQHKLLLKLMEYDYSIEYKAGKENLVADALSRIPPAEQCQAITTVIPE-WVRDIQRSYEG 1123
Query: 923 DSKLVKVIQDLLISPTSHPGFEFKKGLLYYKNRLVLSKASNRIPMIISECHDTPTGGHSG 982
D + K++ + + + + GLL YK R+ + + + +I H + GGHSG
Sbjct: 1124 DVQAHKILSLIGTEGDTDGSYSQEAGLLRYKGRIYVGENTEIREELIRSYHSSAFGGHSG 1183
Query: 983 HFRTYKRIASFLYWEGMKTDIKNFVEDCEICQRSKYSTLAPGGLLQPLPIPTQVWMDISM 1042
TY RI S YW G+K ++ F+ +C ICQ +K + GLL PL +P W I+M
Sbjct: 1184 MRATYHRIKSLFYWPGLKKAVEGFIRECPICQVTKAEHIHIPGLLDPLEVPDMAWAHITM 1243
Query: 1043 DFVGGLPKVRGKDTVLVVVDRLTKFAHFYALGHPYSAKDVAVLFIKELVKLHGFPTTIVS 1102
DFV GLPK GKD +LVVVDRLTK+AHF A+ HPY+ + V LF+ + +LHG P I++
Sbjct: 1244 DFVEGLPKSNGKDVILVVVDRLTKYAHFIAMAHPYTVEQVVELFMNNIHRLHGMPMAIIT 1303
Query: 1103 DRDPLFLSNFWKELFKMAGTQLKLSTSYHPQTDGQTEVTNRCLETYLRCFVGPKPKQWLD 1162
DRD +F S ++E+FK +LK STSYHPQTDGQTE N+CLE+YLR +P +W
Sbjct: 1304 DRDRIFTSQLFQEIFKSMKVRLKFSTSYHPQTDGQTERVNQCLESYLRSMTFQEPTRWHS 1363
Query: 1163 WLPWAEFWFNTNYNSSAGMSPFKALYGRDPPLLLKAGAIPSRVEEVNQLFQQRDGVLGEL 1222
WL AE+W+NT Y++S M+PF+ALYG PP + + + EE +Q+D ++ +L
Sbjct: 1364 WLALAEWWYNTTYHTSIQMTPFQALYGYPPPQINEFSVPCNVSEEARVTIEQKDAIIQKL 1423
Query: 1223 KQNLLKAQHQMKVQADKHRRLVEFNEGDWVYLKLQPYKLKSIATRPCAKLAPRFYGPYKI 1282
K +L +AQ ++K AD++R GD VYLKLQPY+ + R KL +FYGP+KI
Sbjct: 1424 KYSLTEAQRRIKHYADRNRSERTLAVGDMVYLKLQPYRQTAFGIRGSLKLRSKFYGPFKI 1483
Query: 1283 LDRVGPVAYKLELPAHSKIHPVFHVSLLKQALKPTQQPQPLPPMLNEELELEVVPEDVID 1342
+++VG VAYKL+LP S IHPVFHVS LK+ + P P + + +++ P V+
Sbjct: 1484 MEKVGRVAYKLQLPEGSNIHPVFHVSQLKKHIGSRAVPMANLPSVGPDGQIKTEPVAVLK 1543
Query: 1343 HREDAQGNLEV---LIKWEQLPTCDNTWELAAVIQDKFPLF 1380
R +G + V L+ W L + TWE A++IQ FP F
Sbjct: 1544 RRMIPRGGVAVTQWLVLWHNLSPSEATWEDASMIQSMFPSF 1584
>gb|AAV24812.1| putative polyprotein [Oryza sativa (japonica cultivar-group)]
Length = 1475
Score = 885 bits (2288), Expect = 0.0
Identities = 510/1423 (35%), Positives = 785/1423 (54%), Gaps = 90/1423 (6%)
Query: 2 KLEIPIFSGDDAVGWTQKLERYFAMREVTEDERMQATMVALEGRALSWFQWWERCNPSPT 61
+LEIP+FSG+D + W ++ E++F + D+ + + L GRAL WF
Sbjct: 97 RLEIPLFSGEDPIDWLKQCEKFFEITGTPLDQWVNLAVAHLNGRALKWFGGIGLPWQVIA 156
Query: 62 WEAFKLAVVRRFQPSMIQNPFELLLSLKQVGT-VDEYVEEFEKYAGALKEIDHDFVR--- 117
W + V RF + EL ++KQ GT V++Y+++FE Y +K DH +++
Sbjct: 157 WPQWCSMVCTRFSAASEHEAIELFQNVKQFGTTVEQYIDKFEDYVDLVKR-DHPYLQEQY 215
Query: 118 --GIFLNGLKEEIKAEVRLIQKSLLIEQKNQIVTKKGVGFTRPSSAFRNNNYSKVVTVEP 175
F+ GL+ +IK +V + L+E +K VG
Sbjct: 216 LTSCFIGGLRADIKYDVCGQKPQGLLETYWAANARKMVG--------------------- 254
Query: 176 QNNTDQKQDSSSVGSVAMPSRNNAGIDSSRNRGGEFKHLTGAQMREKRDKNLCFRCDEPY 235
N ++ ++ + +G + N+ G +NRG ++R++ C+ C EP+
Sbjct: 255 --NFNRNRNQNPLGGNQGRNANHRG----QNRGEG----------DRREEKKCWFCKEPW 298
Query: 236 SREHKCRNKQLRMIIMEDDD-------------DADCGEFEDALSGEFNS-----LQLSL 277
H+C+ KQ ++E+DD + + E E++ + E S + +S
Sbjct: 299 FPRHQCKIKQAIHALLEEDDGQEDKETSNTGGDEEEKKETEESATSENESPTEELMYISQ 358
Query: 278 CSMAGLTSTKSWKMVGQIGNQSIVVLIDCGASHNFISHKLVEQLNLTVAETQTYTVEVGD 337
++ G + ++ ++ +I ++ V L+D G++ F+ + + T T V V
Sbjct: 359 TAVQGTSRPDTFSVLIKINGRTAVGLVDSGSTTTFMDQDYALRNYYPLKNTDTKKVVVAG 418
Query: 338 GYKIRCKGKCSQLGIMIQALEIVQNFYLFGLNGMDVVLGIEWLASLGDIKANFGKMELTL 397
G +++ + IQ F L L G D++LG +W+ + I + + L +
Sbjct: 419 GGELKTDVMVPDISYEIQGECFTNQFKLLPLKGYDIILGADWIYNYSPISLDLKQRILGI 478
Query: 398 KRGKEVYTLKGDPSLTKSELSYGALMQILLEEGE-GLLVHCDT-GEKVNKKECEIPEIIT 455
+G +V L+ K G ++ +L++G G+++ + E V ++ IPE I+
Sbjct: 479 TKGNKVILLQDFTKPNKHFQISGKRLEKMLKKGALGMVIQVNVMSETVEEEGHVIPEDIS 538
Query: 456 GVLLQFDTVFQDPQGLPPRRRHDHAIHLKEGAQVPNLRPYKCPHYQKNEVEKLVAEMLEA 515
++ QF V ++P+GLPP+R DH I+L+ GA PN+RPY+ PHYQK +E ++ E++E+
Sbjct: 539 DIIQQFPAVLKEPKGLPPKRECDHVINLQSGAVPPNIRPYRVPHYQKEAMENIINELIES 598
Query: 516 GVIRPSISPFSSPIILVKKKDGGWRLCVDYRALNKVTIPNKFPIPIIEELLDELGGAKVF 575
I+ S SP+SSP ++V+KKDG WR+CVDYR LN T+ NKFP+PIIE+LLDEL GA++F
Sbjct: 599 KEIQTSDSPYSSPAVMVRKKDGSWRMCVDYRQLNAQTVKNKFPMPIIEDLLDELNGARIF 658
Query: 576 SKLDLKSGYHQIRMKDADIEKTAFRTHEGHYEFLVMPFGLTNAPSTFQSLMNEVLKPYLR 635
SKLDL+SGYHQIRM + D+ KTAFRTH GHYE+ VMPFGLTN P+TFQSLMN VL P+LR
Sbjct: 659 SKLDLRSGYHQIRMAEKDVHKTAFRTHLGHYEYQVMPFGLTNDPATFQSLMNHVLAPFLR 718
Query: 636 KFALVFFDDILVYSPDLLTHTTHLQQVLTLLADHALKANRKKCSFGQTSLEYLGHIVSGE 695
+F LVFFDDIL+YS H H++ V+ L D+ L KKC+FG S+ YLGH++S +
Sbjct: 719 RFVLVFFDDILIYSKTRAEHLEHVKLVMQALQDNHLVIKLKKCAFGLASVSYLGHVISQD 778
Query: 696 GGGC*PIKGGSYEGLANP*------RYQGNEGVPRFDWLL*TLCQGLWENCKTLD*PSEE 749
G P K G + P ++ G G R QG C+ + ++
Sbjct: 779 GVATDPKKVGKIKNWPTPKDVTDVRKFLGMTGYYR------RFIQGYGTICRPIHDMLKK 832
Query: 750 RWVQLDRISNCSF*AFKNSHG*LASVSCARFYKTICG*D*CLQQRAWSCLDARGQTLAFW 809
Q +F K+ ++ F + + L G+ +AF+
Sbjct: 833 NGFQWGADQTTAFETLKHKLRTSPVLALPDFDQAFTIEADACGVGIGAVLMQGGRPIAFF 892
Query: 810 SQGLSPRAQHKSVYERELMALVQAIQKWRHYLMGRHFIVRTDQKSLKFLTDQRLFS*DQF 869
S+ L P+A +S+YE+E MA+++A++KWRHY++G I++TDQ+SLKF+ QRL Q
Sbjct: 893 SKALGPKAAGQSIYEKEAMAILEALKKWRHYVLGSKLIIKTDQQSLKFMMGQRLVEGIQH 952
Query: 870 KWAVKLVGLDFEIQYKPGSENTVADALSRKMMYSA-------LSILTSAEKEDWNSELQQ 922
K +KL+ D+ I+YK G EN VADALSR A ++++ D +
Sbjct: 953 KLLLKLMEYDYTIEYKSGKENLVADALSRLPQKEAVADRCHPMTVVIPEWIVDIQRSYEN 1012
Query: 923 DSKLVKVIQDLLISPTSHPGFEFK--KGLLYYKNRLVLSKASNRIPMIISECHDTPTGGH 980
D + K++ LI + P E+K GLL YK R+ + +A++ +I+ H + GGH
Sbjct: 1013 DVQAHKILS--LIGTAADPDREYKLEAGLLKYKGRIYVGEATDIRRQLITTYHSSSFGGH 1070
Query: 981 SGHFRTYKRIASFLYWEGMKTDIKNFVEDCEICQRSKYSTLAPGGLLQPLPIPTQVWMDI 1040
SG T+ RI YW GM+ +++ F+ +C CQ +K + GLL PL IP W I
Sbjct: 1071 SGMRATHHRIKMLFYWHGMRGEVERFIRECPTCQITKSEHVHIPGLLNPLEIPDMAWTHI 1130
Query: 1041 SMDFVGGLPKVRGKDTVLVVVDRLTKFAHFYALGHPYSAKDVAVLFIKELVKLHGFPTTI 1100
+MDF+ GLPK +GKD +LVVVDRLTK+AHF AL HPY + V F+ + KLHG P I
Sbjct: 1131 TMDFIEGLPKSQGKDVILVVVDRLTKYAHFIALAHPYDVEQVVEAFMNNIHKLHGMPMVI 1190
Query: 1101 VSDRDPLFLSNFWKELFKMAGTQLKLSTSYHPQTDGQTEVTNRCLETYLRCFVGPKPKQW 1160
++DRD +F S+ ++E+FK +L+ ST+YHPQ DGQTE N+CLE+YLR +P +W
Sbjct: 1191 ITDRDRIFTSSLFQEIFKAMKVKLRFSTAYHPQMDGQTERVNQCLESYLRNMTFQEPHKW 1250
Query: 1161 LDWLPWAEFWFNTNYNSSAGMSPFKALYGRDPPLLLKAGAIPSRVEEVNQLFQQRDGVLG 1220
WL AE+W+NT ++++ M+PFKA+YG PP + + + EE ++++ +L
Sbjct: 1251 YSWLALAEWWYNTTFHTAIQMTPFKAMYGYSPPQINEFSVPCNISEEARVTIEEKEAILN 1310
Query: 1221 ELKQNLLKAQHQMKVQADKHRRLVEFNEGDWVYLKLQPYKLKSIATRPCAKLAPRFYGPY 1280
+LK +L AQH+MK ADK+R GD VYLKL+PY+ + R KL +FYGP+
Sbjct: 1311 KLKNSLADAQHRMKYFADKNRTERNLEVGDMVYLKLKPYRQSAFGIRGSLKLRSKFYGPF 1370
Query: 1281 KILDRVGPVAYKLELPAHSKIHPVFHVSLLKQALKPTQQPQPLPPMLNEELELEVVPEDV 1340
K+L ++G +AYKL+LP ++IHPVFHVS LK+ L P P + + +++ P V
Sbjct: 1371 KVLQKIGQLAYKLQLPDDAQIHPVFHVSQLKKHLGKHAIPMSNLPSVGPDGQIKTEPLAV 1430
Query: 1341 IDHREDAQGNLEV---LIKWEQLPTCDNTWELAAVIQDKFPLF 1380
+ R + + V LI W+ L + TWE A+VIQ FP F
Sbjct: 1431 LQRRMVPRKGVAVTQWLILWQNLSPAEATWEDASVIQAMFPSF 1473
>ref|XP_470219.1| Putative retroelement [Oryza sativa] gi|15451607|gb|AAK98731.1|
Putative retroelement [Oryza sativa]
Length = 1461
Score = 857 bits (2214), Expect = 0.0
Identities = 518/1409 (36%), Positives = 751/1409 (52%), Gaps = 81/1409 (5%)
Query: 4 EIPIFSG-DDAVGWTQKLERYFAMREVTEDERM-QATMVALEGRALSWFQWWERCNPSPT 61
+ P + G D + + + E +F + + ++E++ A+ LEG L + Q E +PT
Sbjct: 70 DFPHYDGKSDPLIFINRCESFFLQQRIMQEEKVWMASHNLLEGAQLWYMQVQEDERGTPT 129
Query: 62 WEAFKLAVVRRFQPSMIQNPFELLLSLKQVGTVDEYVEEFEKYAGALKEIDHDFVRGIFL 121
W FK + R+ P + P L S ++ GTV++Y + F+ +D + +F
Sbjct: 130 WTRFKELLNLRYGPPLRSAPLFELSSCRRTGTVEDYQDRFQALLPRAGRLDEEQRVQLFT 189
Query: 122 NGL------------KEEIKAEVRLIQKSLLIEQKNQIVTKKGVGFTRPSSAFRNNNYSK 169
GL + + A + L ++ LIEQ + K P+ A R
Sbjct: 190 GGLLPPLSLQVQMQNPQSLAAAMSLARQFELIEQYTAVPAKAPGRGVLPAPAPR------ 243
Query: 170 VVTVEPQNNTDQKQDSSSVGSVAMPSRNNAGIDSSRNRGGEFKHLTGAQMREKRDKNLCF 229
PQ ++ A + +N + + L A+ E+R LCF
Sbjct: 244 -----PQLALPAPAGAAKPAPPAATAADNRPV----------RRLNQAEQEERRRLGLCF 288
Query: 230 RCDEPYSREHKCRNKQLRMIIMEDDDDADCGEFE-DALSGEFNSLQLSLCSMAGLTSTKS 288
CDE YSR H K+L + +D+D + E E DA + F SL ++AG+
Sbjct: 289 NCDEKYSRGHNKVCKRLFFVDSVEDEDEEAPEDEVDAEAPVF-----SLHAVAGVAVGHP 343
Query: 289 WKMVGQIGNQSIVVLIDCGASHNFISHKLVEQLNLTVAETQTYTVEVGDGYKIRCKGKCS 348
+ Q+G ++V L+D G++HNFI + L+V T V +G K+ C G
Sbjct: 344 ILLRVQLGATTLVALVDTGSTHNFIGESAAARTGLSVQPRPRMTATVANGEKVACPGVLR 403
Query: 349 QLGIMIQALEIVQNFYLFGLNGMDVVLGIEWLASLGDIKANFGKMELTLKRGKEVYTLKG 408
I I+ + + Y+ L G D+VLG +W+A LG + + LT +G
Sbjct: 404 HAPITIEGMPFHVDLYVMPLAGYDIVLGTQWMAKLGRMSWDVTTRALTFDLEGRTICWQG 463
Query: 409 DPSLTKSELSYGALMQILLEEGEGLLVHCDTGEKVNKKECEIPEIITGVLLQFDTVFQDP 468
P+ +G V + + ++ G+L F VF +P
Sbjct: 464 APNQ------------------DGPAVRAASADD---------SLLGGLLDSFADVFTEP 496
Query: 469 QGLPPRRRHDHAIHLKEGAQVPNLRPYKCPHYQKNEVEKLVAEMLEAGVIRPSISPFSSP 528
GLPP+R DHAI LK+G +RPY+ P K+E+E+ A M+ G++R S S FSSP
Sbjct: 497 TGLPPQRGRDHAIVLKQGTSPVAVRPYRYPAAHKDELERQCAAMISQGIVRRSDSAFSSP 556
Query: 529 IILVKKKDGGWRLCVDYRALNKVTIPNKFPIPIIEELLDELGGAKVFSKLDLKSGYHQIR 588
++LVKK D WR CVDYRALN +T+ + FPIP+++ELLDEL GA+ FSKLDL+SGYHQ+R
Sbjct: 557 VLLVKKADSSWRFCVDYRALNALTVKDAFPIPVVDELLDELHGARFFSKLDLRSGYHQVR 616
Query: 589 MKDADIEKTAFRTHEGHYEFLVMPFGLTNAPSTFQSLMNEVLKPYLRKFALVFFDDILVY 648
M+ DI KTAFRTH+G YEFLVMPFGL NAP+TFQ+LMN+VL+ +LR+F LVFFDDIL+Y
Sbjct: 617 MRPEDIHKTAFRTHDGLYEFLVMPFGLCNAPATFQALMNDVLRSFLRRFVLVFFDDILIY 676
Query: 649 SPDLLTHTTHLQQVLTLLADHALKANRKKCSFGQTSLEYLGHIVSGEGGGC*PIKGGSYE 708
S H HL+ VLT+L +H L R KC+FG S+ YLGH++S G P K +
Sbjct: 677 SDTWADHLRHLRAVLTVLREHKLFIKRSKCAFGVDSVAYLGHVISAAGVAMDPAKVQAIR 736
Query: 709 GLANP*RYQGNEGVPRFDWLL*TLCQGLWENCKTLD*PSEERWVQLDRISNCSF*AFKNS 768
P + G L ++ + +F A K +
Sbjct: 737 EWPQPRSARAVRGFLGLAGYYRKFVHNYGTIAAPLTALLKKEGFAWTEAATAAFDALKAA 796
Query: 769 HG*LASVSCARFYKTICG*D*CLQQRAWSCLDARGQTLAFWSQGLSPRAQHKSVYERELM 828
++ F K + L G LAF+S+ ++PR + + YEREL+
Sbjct: 797 VSSAPILAMPDFTKAFTVECDASSHGFGAVLIQDGHPLAFFSRPVAPRHRALAAYERELI 856
Query: 829 ALVQAIQKWRHYLMGRHFIVRTDQKSLKFLTDQRLFS*DQFKWAVKLVGLDFEIQYKPGS 888
LV A++ WR YL GRHF V+TD SLK+L DQRL + Q W KL+G DF ++YKPG+
Sbjct: 857 GLVLAVRHWRPYLWGRHFTVKTDHYSLKYLLDQRLSTIPQHHWVGKLLGFDFTVEYKPGA 916
Query: 889 ENTVADALSRKMMYSALSILT-SAEKEDWNSELQQ----DSKLVKVIQDLLISPTSHPGF 943
NTVADALSR+ S+L SA + D+ L+Q D LV +Q + S T +
Sbjct: 917 ANTVADALSRRDTTEDASVLVLSAPRFDFIERLRQAQDVDPALV-ALQAEIRSGTRAGPW 975
Query: 944 EFKKGLLYYKNRLVLSKASNRIPMIISECHDTPTGGHSGHFRTYKRIASFLYWEGMKTDI 1003
G++ + RL L AS + ++ H+ GH G RT R+ ++ MK+ +
Sbjct: 976 SMADGMVLFAGRLYLPPASPLLQEVLRAVHEE---GHEGVQRTLHRLRRDFHFPNMKSVV 1032
Query: 1004 KNFVEDCEICQRSKYSTLAPGGLLQPLPIPTQVWMDISMDFVGGLPKVRGKDTVLVVVDR 1063
++FV CE+CQR K L P GLL PLP+P VW D+++DFV LP+VRGK +L VVDR
Sbjct: 1033 QDFVRTCEVCQRYKAEHLQPAGLLLPLPVPQGVWTDVALDFVEALPRVRGKSVILTVVDR 1092
Query: 1064 LTKFAHFYALGHPYSAKDVAVLFIKELVKLHGFPTTIVSDRDPLFLSNFWKELFKMAGTQ 1123
+K+ HF L HPYSA+ VA +F E+V+LHG P ++VSDRDP+F S FW EL ++ GT+
Sbjct: 1093 FSKYCHFIPLAHPYSAESVAQVFFAEIVRLHGVPQSMVSDRDPVFTSAFWSELMRLVGTK 1152
Query: 1124 LKLSTSYHPQTDGQTEVTNRCLETYLRCFVGPKPKQWLDWLPWAEFWFNTNYNSSAGMSP 1183
L ++T++HPQ+DGQ+E NR + YLRC G +P+QWL WLPWAEF FNT Y +S +P
Sbjct: 1153 LHMTTAFHPQSDGQSEAANRVIIMYLRCLTGDRPRQWLRWLPWAEFVFNTAYQTSLRDTP 1212
Query: 1184 FKALYGRDPPLLLKAGAIPSRVEEVNQLFQQRDGVLGELKQNLLKAQHQMKVQADKHRRL 1243
F+ +YGRDPP + +RV V + ++R L +++ L +AQ K DK R
Sbjct: 1213 FRVVYGRDPPSIRSYEPGDTRVAAVAKSMEERSEFLEDIRYRLEQAQAIQKKYYDKSHRA 1272
Query: 1244 VEFNEGDWVYLKLQPYKLKSIATRPCAKLAPRFYGPYKILDRVGPVAYKLELPAHSKIHP 1303
V F GDWV L+L+ S++ KL PR++GPY+I + + VA +L LPA +++H
Sbjct: 1273 VSFQVGDWVLLRLRQRAPASLSLAVSGKLKPRYFGPYRIAEMINEVAARLALPAGARLHD 1332
Query: 1304 VFHVSLLKQ-ALKPTQQPQPLPPMLNEELELEVVPEDVIDHREDAQGNLEVLIKWEQLPT 1362
VFH+ LLK+ P P PLP + + + E PE VI R A+G +VL++W+
Sbjct: 1333 VFHIGLLKKWHGAPPDAPPPLPNVHHGAVACE--PERVIKARL-ARGVRQVLVQWKGTSA 1389
Query: 1363 CDNTWELAAVIQDKFPLFPLEDKVKLLGG 1391
TWE ++P LED++ L GG
Sbjct: 1390 ASATWEDREPFFARYPALQLEDELPLDGG 1418
>gb|AAL68644.1| polyprotein [Oryza sativa (japonica cultivar-group)]
Length = 933
Score = 689 bits (1777), Expect = 0.0
Identities = 381/882 (43%), Positives = 523/882 (59%), Gaps = 25/882 (2%)
Query: 512 MLEAGVIRPSISPFSSPIILVKKKDGGWRLCVDYRALNKVTIPNKFPIPIIEELLDELGG 571
ML+ G+I+ S SPFSSP +LVKKKDG WR+C+DYR LN +T +P+PII+ELLDEL G
Sbjct: 1 MLQNGIIQHSSSPFSSPALLVKKKDGSWRVCIDYRQLNAITKKGTYPMPIIDELLDELAG 60
Query: 572 AKVFSKLDLKSGYHQIRMKDADIEKTAFRTHEGHYEFLVMPFGLTNAPSTFQSLMNEVLK 631
AK+FSKLDL++GYHQIRM + + KTAF+TH GHYE+ VM FGLT AP+TFQ MN+ L+
Sbjct: 61 AKIFSKLDLRAGYHQIRMAEGEEFKTAFQTHSGHYEYKVMSFGLTGAPATFQGAMNDTLR 120
Query: 632 PYLRKFALVFFDDILVYSPDLLTHTTHLQQVLTLLADHALKANRKKCSFGQTSLEYLGHI 691
P LRK ALVFFDDIL+YSPD+ +H HL+QVL LL H K KC F QT + YLGHI
Sbjct: 121 PLLRKCALVFFDDILIYSPDMNSHLDHLKQVLQLLDTHQWKVKLSKCDFAQTQISYLGHI 180
Query: 692 VSGEGGGC*PIKGGSYEGLANP*RYQGNEGV-------PRFDWLL*TLCQGLWENCKTLD 744
+SG+G P K S A P + G +F TL + L + K
Sbjct: 181 ISGQGVSTDPSKIQSIVDWAVPTTLKKLRGFLGLAGYYRKFVKDFGTLSKPLTQLLK--- 237
Query: 745 *PSEERWVQLDRISNCSF*AFKNSHG*LASVSCARFYKTICG*D*CLQQRAWSCLDARGQ 804
+ +V + N +F A K++ ++ F + + L
Sbjct: 238 --KDAPFVWSAEV-NQAFQALKHALTSTPVLALPNFQQGFTIETDASDIGIGAVLSQNQH 294
Query: 805 TLAFWSQGLSPRAQHKSVYERELMALVQAIQKWRHYLMGRHFIVRTDQKSLKFLTDQRLF 864
+AF S+ L PR Q S YE+E +A++ A+ WR YL + F++ TD SL LT+QRL
Sbjct: 295 PVAFVSKALGPRTQGLSTYEKECLAIMMAVDHWRPYLQFQEFLIITDHHSLMHLTEQRLH 354
Query: 865 S*DQFKWAVKLVGLDFEIQYKPGSENTVADALSRKMM-----YSALSILTSAEKEDWNSE 919
+ Q K KL GL F+I Y+ G N ADALSR + + +S + +D
Sbjct: 355 TPWQQKAFTKLSGLQFQIVYRKGKHNAAADALSRHVPEETSEFLGISTCSPVWLQDILHG 414
Query: 920 LQQDSKLVKVIQDLLISPTSHPGFEFKKGLLYYKNRLVLSKASNRIPMIISECHDTPTGG 979
QD + ++ L ++P+S+P + KGL+ +K ++ + SN IIS HD+P GG
Sbjct: 415 YDQDPLALSLLTGLAVNPSSYPHYSLSKGLIKHKGKVWVGNNSNIQQQIISALHDSPLGG 474
Query: 980 HSGHFRTYKRIASFLYWEGMKTDIKNFVEDCEICQRSKYSTLAPGGLLQPLPIPTQVWMD 1039
HSG TYKRI S W MK ++ + C +C ++K GLLQPLP+P W
Sbjct: 475 HSGFPVTYKRIKSLFSWPHMKLTVQKQLASCAVCLQAKPDRSKYPGLLQPLPVPDGAWQI 534
Query: 1040 ISMDFVGGLPKVRGKDTVLVVVDRLTKFAHFYALGHPYSAKDVAVLFIKELVKLHGFPTT 1099
ISMDF+ GLPK +D +LVVVD+ +K+AHF L HP+SA DVA +F+ + KLHG P
Sbjct: 535 ISMDFIEGLPKSYHQDCILVVVDKFSKYAHFMPLSHPFSALDVAKVFMLNVYKLHGLPQI 594
Query: 1100 IVSDRDPLFLSNFWKELFKMAGTQLKLSTSYHPQTDGQTEVTNRCLETYLRCFVGPKPKQ 1159
I+SDRD +F S W++LF +GT+L LS++YHPQ+DGQTE N+CLE +LRCFV P +
Sbjct: 595 IISDRDKIFTSALWEQLFLRSGTKLHLSSAYHPQSDGQTERVNQCLEIFLRCFVHATPAK 654
Query: 1160 WLDWLPWAEFWFNTNYNSSAGMSPFKALYGRDPPLLLKAGAIPSRVEEVNQLFQQRDGVL 1219
W WL AEFW+N++Y+S+ +PF+ LYG PP A + +++ +R +
Sbjct: 655 WSLWLHLAEFWYNSSYHSALNKTPFEVLYGY-PPSHFGIRADACVISDLDSWLSERHLMT 713
Query: 1220 GELKQNLLKAQHQMKVQADKHRRLVEFNEGDWVYLKLQPYKLKSIATRPCAKLAPRFYGP 1279
L+Q+L +AQ MK QADK R F GDWV+LKLQPY S+A R KL+ R++GP
Sbjct: 714 QLLRQHLNRAQQVMKTQADKKRSFRSFQVGDWVFLKLQPYVQSSVAKRANHKLSFRYFGP 773
Query: 1280 YKILDRVGPVAYKLELPAHSKIHPVFHVSLLKQALKPTQQPQPLPPMLNEELELEVVPED 1339
Y+IL +VG VAYKL+LPA S +HPVFHVS LK Q P + + ++ P
Sbjct: 774 YQILSKVGSVAYKLQLPADSMVHPVFHVSQLKGTQNFKHSIQSQLPNITDHIQ---YPVQ 830
Query: 1340 VIDHREDAQGN---LEVLIKWEQLPTCDNTWELAAVIQDKFP 1378
++D R +GN ++L+ W LP + TWE ++ +FP
Sbjct: 831 ILDTRIQKKGNKVVRQILVCWSNLPAVEATWEDEEELKQRFP 872
>ref|XP_474255.1| OSJNBa0087O24.13 [Oryza sativa (japonica cultivar-group)]
gi|32488663|emb|CAE03590.1| OSJNBa0087O24.13 [Oryza
sativa (japonica cultivar-group)]
Length = 1311
Score = 626 bits (1615), Expect = e-177
Identities = 334/805 (41%), Positives = 466/805 (57%), Gaps = 8/805 (0%)
Query: 583 GYHQIRMKDADIEKTAFRTHEGHYEFLVMPFGLTNAPSTFQSLMNEVLKPYLRKFALVFF 642
GYHQIRM ADI KTAF TH GH+E+LVMPFGLTNAP+TFQ+LMN +L PYLRKF LVFF
Sbjct: 506 GYHQIRMHPADIYKTAFSTHMGHFEYLVMPFGLTNAPATFQALMNSILAPYLRKFVLVFF 565
Query: 643 DDILVYSPDLLTHTTHLQQVLTLLADHALKANRKKCSFGQTSLEYLGHIVSGEGGGC*PI 702
DDIL+YSP L H TH++ VL LL H L A KC FGQ+ +EYLG+I+S G P
Sbjct: 566 DDILIYSPSLSDHVTHVELVLQLLRQHHLSAKPSKCVFGQSQVEYLGYIISNAGVAIDPT 625
Query: 703 KGGSYEGLANP*RYQGNEGVPRFDWLL*TLCQGLWENCKTLD*PSEERWVQLDRISNCSF 762
K + + P G + CK L ++ +F
Sbjct: 626 KVQAVKNWPVPKSVTDLSGFLGLAGYYRKFIKDFGLICKPLFTALKKTGFTWQDEQQQAF 685
Query: 763 *AFKNSHG*LASVSCARFYKTICG*D*CLQQRAWSCLDARGQTLAFWSQGLSPRAQHKSV 822
K+ ++ F + + L + LA++S+ + P+A S
Sbjct: 686 ATIKDKLAHAPVLAMPNFTQPFILEADASGTGLGAVLMQNNRPLAYFSKAIGPKAAGLST 745
Query: 823 YERELMALVQAIQKWRHYLMGRHFIVRTDQKSLKFLTDQRLFS*DQFKWAVKLVGLDFEI 882
Y++E +A+++A++KW+HY +G I+RTDQ SLK++ +QRL Q K +KL+ D++I
Sbjct: 746 YDKEALAILEALKKWKHYFLGTSLIIRTDQASLKYINEQRLTEGIQHKLLIKLLSYDYKI 805
Query: 883 QYKPGSENTVADALSRKMMYSALSILTSAEKEDWNSEL----QQDSKLVKVIQDLLISPT 938
+YK G EN ADALSR + L T+ W +E+ D K + L I+P
Sbjct: 806 EYKKGKENKAADALSRIPSVAQL-FSTTIIVPTWITEILASYATDPKCTALESQLRITPQ 864
Query: 939 SHPGFEFKKGLLYYKNRLVLSKASNRIPMIISECHDTPTGGHSGHFRTYKRIASFLYWEG 998
HP + G+L YKNRL + ++ + HD+ GGHSG TY+R YW G
Sbjct: 865 GHPPYTLTSGILRYKNRLYVGAGTDLRAKLQQSFHDSALGGHSGERATYQRAKLLFYWPG 924
Query: 999 MKTDIKNFVEDCEICQRSKYSTLAPGGLLQPLPIPTQVWMDISMDFVGGLPKVRGKDTVL 1058
MK DI ++V+ C +CQ++K GLL PLPIP W ISMDF+ GLPK KD +
Sbjct: 925 MKKDIASYVKLCPVCQKNKSEHNLQPGLLHPLPIPEMAWTHISMDFIEGLPKSDNKDVIW 984
Query: 1059 VVVDRLTKFAHFYALGHPYSAKDVAVLFIKELVKLHGFPTTIVSDRDPLFLSNFWKELFK 1118
V+VDR TK+AHF AL HP++A + F++ K HG P IVSDRD +F S WK++F+
Sbjct: 985 VIVDRFTKYAHFVALSHPFTADQIVTQFVENYYKHHGLPAVIVSDRDRIFTSQTWKDVFE 1044
Query: 1119 MAGTQLKLSTSYHPQTDGQTEVTNRCLETYLRCFVGPKPKQWLDWLPWAEFWFNTNYNSS 1178
AG +L S++YHPQTDGQTE N+CLE YLRC KPK+W L +A++W+NT+++++
Sbjct: 1045 KAGVKLHFSSAYHPQTDGQTERVNQCLENYLRCMTFTKPKKWKSLLAYAKWWYNTSFHTT 1104
Query: 1179 AGMSPFKALYGRDPPLLLKAGAIPSRVEEVNQLFQQRDGVLGELKQNLLKAQHQMKVQAD 1238
GM+P++AL+G PPLL ++ PS + + + + +K +LLKAQ +MK AD
Sbjct: 1105 LGMTPYQALHGVPPPLLAESFLSPSLFTDARNKAEAKSVITAAIKSSLLKAQARMKHFAD 1164
Query: 1239 KHRRLVEFNEGDWVYLKLQPYKLKSIATRPCAKLAPRFYGPYKILDRVGPVAYKLELPAH 1298
+R GD VYLK+QPY+ S+ KL ++YGP+++L+R+G VAYKL LPA
Sbjct: 1165 MNRTERVLTVGDMVYLKMQPYRHNSLGLHSSLKLHSKYYGPFRVLERIGSVAYKLLLPAS 1224
Query: 1299 SKIHPVFHVSLLKQALKPTQQPQPLPPMLNEELELEVVPEDVIDHREDAQGNLEVL---I 1355
S+IHPVFHVS LK+ + P P+P P+ ++ + P V++ R Q N V+ +
Sbjct: 1225 SQIHPVFHVSQLKKHIGPKVVPEPGLPLTDDNGNILSQPTAVLERRLIPQNNAPVVQWKV 1284
Query: 1356 KWEQLPTCDNTWELAAVIQDKFPLF 1380
+W LP TWE AA I FP F
Sbjct: 1285 QWANLPLSAATWEDAAFISKVFPAF 1309
Score = 76.6 bits (187), Expect = 6e-12
Identities = 41/137 (29%), Positives = 69/137 (49%), Gaps = 4/137 (2%)
Query: 1 RKLEIPIFSGDDAVGWTQKLERYFAMREVTEDERMQATMVALEGRALSWFQWWERCNPSP 60
R ++ P F GD W +K E+YF++ + E++++ V + GRA W + S
Sbjct: 288 RNVDFPTFEGDYPESWIRKAEKYFSLYQTPEEDKVLLAEVHISGRADQWIESSAVPTASL 347
Query: 61 TWEAFKLAVVRRFQPSMIQNPFELLLSLKQVGTVDEYVEEFEKYAGALKE----IDHDFV 116
+W FK V +RF E +LKQ G+VD Y+++FE+ +K + D+
Sbjct: 348 SWPEFKTMVCQRFAAKSKIEITETFRNLKQYGSVDSYIDKFEETMALVKRSNPTLTEDYF 407
Query: 117 RGIFLNGLKEEIKAEVR 133
F++GLK IK ++
Sbjct: 408 LDYFISGLKGHIKRPLK 424
>gb|AAF79797.1| T32E20.30 [Arabidopsis thaliana]
Length = 1397
Score = 578 bits (1489), Expect = e-163
Identities = 290/589 (49%), Positives = 397/589 (67%), Gaps = 21/589 (3%)
Query: 812 GLSPRAQHKSVYERELMALVQAIQKWRHYLMGRHFIVRTDQKSLKFLTDQRLFS*DQFKW 871
GL+ + Q K VYERELMA+V +IQKW+HYLMGR F++ TDQKSLKFL +QR S D KW
Sbjct: 812 GLTSKEQLKPVYERELMAIVLSIQKWKHYLMGRRFVLHTDQKSLKFLQEQREVSMDYQKW 871
Query: 872 AVKLVGLDFEIQYKPGSENTVADALSR---------KMMYSALSILTSAEKEDWNSELQQ 922
KL+ +F+I YK G +N AD LSR M+ A ++ T + D E+
Sbjct: 872 LTKLLHYEFDILYKLGVDNKAADGLSRMVQPTGSFSSMLLMAFTVPTVLQLHDLYEEIDS 931
Query: 923 DSKLVKVIQDLLISPTSHPGFEFKKGLLYYKNRLVLSKASNRIPMIISECHDTPTGGHSG 982
++ L ++++ L + + K+G L+ K RL++ K S +P+I++E H GGHSG
Sbjct: 932 NAHLQHLVKECLSAKQGTSAYTVKEGRLWKKQRLIIPKDSKFLPLILAEYHSGLLGGHSG 991
Query: 983 HFRTYKRIASFLYWEGMKTDIKNFVEDCEICQRSKYSTLAPGGLLQPLPIPTQVWMDISM 1042
+T KRI +WEGM DI+ FV CE+CQR KYSTL+P GLLQPLPIPTQVW DIS+
Sbjct: 992 VLKTMKRIQQSFHWEGMMKDIQKFVAKCEMCQRQKYSTLSPAGLLQPLPIPTQVWEDISL 1051
Query: 1043 DFVGGLPKVRGKDTVLVVVDRLTKFAHFYALGHPYSAKDVAVLFIKELVKLHGFPTTIVS 1102
DFV GLP DRL+K+ HF L HP++A DVA +FI E+VKLHGFP +IVS
Sbjct: 1052 DFVEGLP------------DRLSKYGHFIGLKHPFNAVDVARIFIHEVVKLHGFPASIVS 1099
Query: 1103 DRDPLFLSNFWKELFKMAGTQLKLSTSYHPQTDGQTEVTNRCLETYLRCFVGPKPKQWLD 1162
DRD FLS+FWK+ FK++GT+LK ST++HPQTDGQTEV NR LETYLRCF PK W
Sbjct: 1100 DRDNTFLSSFWKDCFKLSGTKLKYSTAFHPQTDGQTEVLNRTLETYLRCFASAHPKTWFQ 1159
Query: 1163 WLPWAEFWFNTNYNSSAGMSPFKALYGRDPPLLLKAGAIPSRVEEVNQLFQQRDGVLGEL 1222
+LP AE W+N++++++ +PFK LYGRDPP +++ A ++ E+ L +QRD +L ++
Sbjct: 1160 YLPRAELWYNSSFHTTIKTTPFKVLYGRDPPPIMRFEANSTKNCELEGLLKQRDLMLADI 1219
Query: 1223 KQNLLKAQHQMKVQADKHRRLVEFNEGDWVYLKLQPYKLKSIATRPCAKLAPRFYGPYKI 1282
K++L+ AQ MK DKHRR VEF+ + V+LKL+PY+ S+ R C KLA +++GP++I
Sbjct: 1220 KEHLVNAQQLMKNNDDKHRREVEFDTRNRVFLKLRPYRQNSVTKRVCQKLAAKYFGPFEI 1279
Query: 1283 LDRVGPVAYKLELPAHSKIHPVFHVSLLKQALKPTQQPQPLPPMLNEELELEVVPEDVID 1342
++R+G VAY+L+LP SKIH VFHVS LKQ L Q PLP +L + E VVPE V++
Sbjct: 1280 MERIGKVAYRLKLPEGSKIHLVFHVSQLKQVLGDHHQVIPLPEVLTADNEFVVVPEAVLE 1339
Query: 1343 HREDAQGNLEVLIKWEQLPTCDNTWELAAVIQDKFPLFPLEDKVKLLGG 1391
R + G LE L+ W+ LP ++TWE+A ++ +FP L+DK+ + GG
Sbjct: 1340 TRYNEDGLLEALVHWQGLPVHEDTWEIAKDLKKQFPGLALQDKLHVEGG 1388
Score = 422 bits (1085), Expect = e-116
Identities = 256/687 (37%), Positives = 364/687 (52%), Gaps = 108/687 (15%)
Query: 1 RKLEIPIFSGDDAVGWTQKLERYFAMREVTEDERMQATMVALEGRALSWFQWWERCNPSP 60
+ +E+P+F G GW ++ER+F E E++ V++ G ALSW+ W
Sbjct: 128 KNVEMPMFDGSGIYGWIARVERFFRSGGYNEAEQLALVSVSVSGEALSWYNWAISRGDFV 187
Query: 61 TWEAFKLAVVRRFQPSMIQNPFELLLSLKQVGTVDEYVEEFEKYAGALKEIDHDFVRGIF 120
+W K ++ RF ++ P + L +KQ G+V EYV+ FE + + +D + GIF
Sbjct: 188 SWLKLKSGLMLRFGNLKLRGPSQSLFCIKQTGSVAEYVQRFEDLSSQVGGLDDQKLEGIF 247
Query: 121 LNGLKEEIKAEVRLIQKSLLIEQKNQIVTKKGVGFTRPSSAFRNNNYSKVVTVEPQNNTD 180
LNGL E++ V + + PQN +
Sbjct: 248 LNGLTGEMQELVHMHK--------------------------------------PQNLPE 269
Query: 181 QKQDSSSVGSVAMPSRNNAGIDSSRNRGGEFKHLTGAQMREKRDKNLCFRCDEPYSREHK 240
+ S+ + M R K L ++ EKR K +CFRCD P+S+EHK
Sbjct: 270 MVAVARSMETSVM-------------RRVVQKELQLVKLDEKRRKGICFRCDGPWSKEHK 316
Query: 241 CRNKQLRMIIMEDDDDADCGEFEDALSGEFNS-----LQLSLCSMAGLTSTKSWKMVGQI 295
C NK+LR++ + + + + E +++ EF+ +LS S GL S + KM G I
Sbjct: 317 CPNKELRVLTVINGFEMEVLE-SNSVEEEFHDSVAQFAELSFSSYMGLPSYTTIKMKGSI 375
Query: 296 GNQSIVVLIDCGASHNFISHKLVEQLNLTVAETQTYTVEVGDGYKIRCKGKCSQLGIMI- 354
C F + + +G G ++ G C ++ + +
Sbjct: 376 CKGEW-----CHTQFYF----------------PNFHIRLGTGITVQGLGLCDKVTMTLP 414
Query: 355 ----QALEIVQNFYLFGLNGMDVVLGIEWLASLGDIKANFGKMELTLKRGKEVYTLKGDP 410
Q LE+ +F L +DV+LGI WL +LGD K N+ + EL+ TL+GDP
Sbjct: 415 VGCGQELELTTHFITLDLGPVDVILGIAWLRTLGDCKVNWERHELSFLYHGRTVTLRGDP 474
Query: 411 SLTKSELSYGALMQILLEEGEGLLVHCDTGEKVNKKECEIPEIITGVLLQFDTVFQDPQG 470
L ++S L T ++ KE E+ Q+ +G
Sbjct: 475 ELDTFKMS---------------LKSFSTKFRLQNKELEVSL----------NSHQNLKG 509
Query: 471 LPPRRRHDHAIHLKEGAQVPNLRPYKCPHYQKNEVEKLVAEMLEAGVIRPSISPFSSPII 530
LPP + ++HAI L G + ++RPY+ PH K +E LV+EML+ G+IR S SPFSSP++
Sbjct: 510 LPPIKGNEHAISLLPGTRAISVRPYRYPHAHKEAMEGLVSEMLDNGIIRASKSPFSSPVL 569
Query: 531 LVKKKDGGWRLCVDYRALNKVTIPNKFPIPIIEELLDELGGAKVFSKLDLKSGYHQIRMK 590
LVKKKD WR CVDYRALN+ TIPNKFPIP+I++LLDEL GA +FSKLDL++GYHQIRMK
Sbjct: 570 LVKKKDQSWRFCVDYRALNRATIPNKFPIPMIDQLLDELHGAIIFSKLDLRAGYHQIRMK 629
Query: 591 DADIEKTAFRTHEGHYEFLVMPFGLTNAPSTFQSLMNEVLKPYLRKFALVFFDDILVYSP 650
DIEKT FRTH+GH+EFLVMPFGL+NAP+TFQS MN++L+P+LRKF LVFFDDIL+YS
Sbjct: 630 VEDIEKTTFRTHDGHFEFLVMPFGLSNAPATFQSSMNDMLRPFLRKFVLVFFDDILIYSR 689
Query: 651 DLLTHTTHLQQVLTLLADHALKANRKK 677
+ H HL VL +L +H ANRKK
Sbjct: 690 NEQEHEEHLAMVLKVLEEHQFYANRKK 716
>gb|AAO23078.1| polyprotein [Glycine max]
Length = 1552
Score = 521 bits (1343), Expect = e-146
Identities = 274/606 (45%), Positives = 383/606 (62%), Gaps = 7/606 (1%)
Query: 799 LDARGQTLAFWSQGLSPRAQHKSVYERELMALVQAIQKWRHYLMGRHFIVRTDQKSLKFL 858
L G +A++S+ L+PR Q +S Y REL+A+ +A+ K+RHYL+G FI+RTDQ+SLK L
Sbjct: 907 LGQNGHPIAYFSKKLAPRMQKQSAYTRELLAITEALSKFRHYLLGNKFIIRTDQRSLKSL 966
Query: 859 TDQRLFS*DQFKWAVKLVGLDFEIQYKPGSENTVADALSRKMMYSALSILTSAEKEDWNS 918
DQ L + +Q W K +G DF+I+YKPG +N ADALSR M A S S E+ +
Sbjct: 967 MDQSLQTPEQQAWLHKFLGYDFKIEYKPGKDNQAADALSRMFML-AWSEPHSIFLEELRA 1025
Query: 919 ELQQDSKLVKVIQDLLI-SPTSHPGFEFKKGLLYYKNRLVLSKASNRIPMIISECHDTPT 977
L D L ++++ + SH + ++GLLY+K+R+V+ + I+ E H +P
Sbjct: 1026 RLISDPHLKQLMETYKQGADASH--YTVREGLLYWKDRVVIPAEEEIVNKILQEYHSSPI 1083
Query: 978 GGHSGHFRTYKRIASFLYWEGMKTDIKNFVEDCEICQRSKYSTLAPGGLLQPLPIPTQVW 1037
GGH+G RT R+ + YW M+ D+K +++ C ICQ++K + P GLLQPLPIP QVW
Sbjct: 1084 GGHAGITRTLARLKAQFYWPKMQEDVKAYIQKCLICQQAKSNNTLPAGLLQPLPIPQQVW 1143
Query: 1038 MDISMDFVGGLPKVRGKDTVLVVVDRLTKFAHFYALGHPYSAKDVAVLFIKELVKLHGFP 1097
D++MDF+ GLP G ++VV+DRLTK+AHF L Y++K VA F+ +VKLHG P
Sbjct: 1144 EDVAMDFITGLPNSFGLSVIMVVIDRLTKYAHFIPLKADYNSKVVAEAFMSHIVKLHGIP 1203
Query: 1098 TTIVSDRDPLFLSNFWKELFKMAGTQLKLSTSYHPQTDGQTEVTNRCLETYLRCFVGPKP 1157
+IVSDRD +F S FW+ LFK+ GT L +S++YHPQ+DGQ+EV N+CLE YLRCF P
Sbjct: 1204 RSIVSDRDRVFTSTFWQHLFKLQGTTLAMSSAYHPQSDGQSEVLNKCLEMYLRCFTYEHP 1263
Query: 1158 KQWLDWLPWAEFWFNTNYNSSAGMSPFKALYGRDPPLLLKAGAIPSRVEEVNQLFQQRDG 1217
K W+ LPWAEFW+NT Y+ S GM+PF+ALYGR+PP L + EV + RD
Sbjct: 1264 KGWVKALPWAEFWYNTAYHMSLGMTPFRALYGREPPTLTRQACSIDDPAEVREQLTDRDA 1323
Query: 1218 VLGELKQNLLKAQHQMKVQADKHRRLVEFNEGDWVYLKLQPYKLKSIATRPCAKLAPRFY 1277
+L +LK NL +AQ MK QADK R V F GD V +KLQPY+ S R KL+ R++
Sbjct: 1324 LLAKLKINLTRAQQVMKRQADKKRLDVSFQIGDEVLVKLQPYRQHSAVLRKNQKLSMRYF 1383
Query: 1278 GPYKILDRVGPVAYKLELPAHSKIHPVFHVSLLKQALKPTQQPQPLPPMLNEELELEVVP 1337
GP+K+L ++G VAYKLELP+ ++IHPVFHVS LK Q P P+ E+ + P
Sbjct: 1384 GPFKVLAKIGDVAYKLELPSAARIHPVFHVSQLKPFNGTAQDPYLPLPLTVTEMGPVMQP 1443
Query: 1338 EDVIDHREDAQGN---LEVLIKWEQLPTCDNTWELAAVIQDKFPLFPLEDKVKLLGGVLI 1394
++ R +G+ ++L++WE + TWE I+ +P F LEDKV G +
Sbjct: 1444 VKILASRIIIRGHNQIEQILVQWENGLQDEATWEDIEDIKASYPTFNLEDKVVFKGEGNV 1503
Query: 1395 GLGLSQ 1400
G+S+
Sbjct: 1504 TNGMSR 1509
Score = 467 bits (1201), Expect = e-129
Identities = 267/716 (37%), Positives = 399/716 (55%), Gaps = 31/716 (4%)
Query: 2 KLEIPIFSGDDAVGWTQKLERYFAMREVTEDERMQATMVALEGRALSWFQWWERCNPSPT 61
KL+ P F G + + W K E++F + +R+ V L+ + W+Q ++ P +
Sbjct: 99 KLDFPRFDGKNVMDWIFKAEQFFDYYATPDADRLIIASVHLDQDVVPWYQMLQKTEPFSS 158
Query: 62 WEAFKLAVVRRFQPSMIQNPFELLLSLKQVGTVDEYVEEFEKYAGALKEIDHDFVRGIFL 121
W+AF A+ F PS P L L Q TV+EY +F + + + + F+
Sbjct: 159 WQAFTRALELDFGPSAYDCPRATLFKLNQSATVNEYYMQFTALVNRVDGLSAEAILDCFV 218
Query: 122 NGLKEEIKAEVRLIQK---------SLLIEQKNQIVTKKGVGFTRPSSAFRNNNYSKVVT 172
+GL+EEI +V+ ++ + L E+K K T+ S N S
Sbjct: 219 SGLQEEISRDVKAMEPRTLTKAVALAKLFEEKYTSPPK-----TKTFSNLARNFTSNTSA 273
Query: 173 VEPQNNTDQKQDSSSVGSVAMPSRNNAGIDSSRNRGGEFKHLTGAQMREKRDKNLCFRCD 232
+ T+QK D+ + + + RN+ K ++ A+++ +R+KNLC+ CD
Sbjct: 274 TQKYPPTNQKNDNPKPNLPPLLPTPSTKPFNLRNQN--IKKISPAEIQLRREKNLCYFCD 331
Query: 233 EPYSREHKCRNKQLRMIIMEDDDDADCGE---FEDALSGEFNSLQLSLCSMAGLTSTKSW 289
E +S HKC N+Q+ ++ +E+ D+ E + + + ++ LSL +M G +
Sbjct: 332 EKFSPAHKCPNRQVMLLQLEETDEDQTDEQVMVTEEANMDDDTHHLSLNAMRGSNGVGTI 391
Query: 290 KMVGQIGNQSIVVLIDCGASHNFISHKLVEQLNLTVAETQTYTVEVGDGYKIRCKGKCSQ 349
+ GQ+G ++ +L+D G+S NFI ++ + L L V V VG+G + +G Q
Sbjct: 392 RFTGQVGGIAVKILVDGGSSDNFIQPRVAQVLKLPVEPAPNLRVLVGNGQILSAEGIVQQ 451
Query: 350 LGIMIQALEIVQNFYLFGLNGMDVVLGIEWLASLGDIKANFGKMELTLKRGKEVYTLKGD 409
L + IQ E+ YL ++G DV+LG WLA+LG A++ + L + + TL+G+
Sbjct: 452 LPLHIQGQEVKVPVYLLQISGADVILGSTWLATLGPHVADYAALTLKFFQNDKFITLQGE 511
Query: 410 PSLTKSELSYGALMQILLEEGEGLLVHCDTGEKVNKK--ECEIPEIITGV-------LLQ 460
+ SE + L + + C + + K+ E + ++ T + L
Sbjct: 512 GN---SEATQAQLHHFRRLQNTKSIEECFAIQLIQKEVPEDTLKDLPTNIDPELAILLHT 568
Query: 461 FDTVFQDPQGLPPRRRHDHAIHLKEGAQVPNLRPYKCPHYQKNEVEKLVAEMLEAGVIRP 520
+ VF P LPP+R DHAI LK+G+ +RPY+ PH QK+++EK++ EML G+I+P
Sbjct: 569 YAQVFAVPASLPPQREQDHAIPLKQGSGPVKVRPYRYPHTQKDQIEKMIQEMLVQGIIQP 628
Query: 521 SISPFSSPIILVKKKDGGWRLCVDYRALNKVTIPNKFPIPIIEELLDELGGAKVFSKLDL 580
S SPFS PI+LVKKKDG WR C DYRALN +T+ + FP+P ++ELLDEL GA+ FSKLDL
Sbjct: 629 SNSPFSLPILLVKKKDGSWRFCTDYRALNAITVKDSFPMPTVDELLDELHGAQYFSKLDL 688
Query: 581 KSGYHQIRMKDADIEKTAFRTHEGHYEFLVMPFGLTNAPSTFQSLMNEVLKPYLRKFALV 640
+SGYHQI ++ D EKTAFRTH GHYE+LVMPFGLTNAP+TFQ LMN++ + LRKF LV
Sbjct: 689 RSGYHQILVQPEDREKTAFRTHHGHYEWLVMPFGLTNAPATFQCLMNKIFQFALRKFVLV 748
Query: 641 FFDDILVYSPDLLTHTTHLQQVLTLLADHALKANRKKCSFGQTSLEYLGHIVSGEG 696
FFDDIL+YS H HL+ VL L H L A KCSFG T ++YLGH VSG G
Sbjct: 749 FFDDILIYSASWKDHLKHLESVLQTLKQHQLFARLSKCSFGDTEVDYLGHKVSGLG 804
>ref|NP_917151.1| putative retroelement pol polyprotein [Oryza sativa (japonica
cultivar-group)]
Length = 1495
Score = 485 bits (1248), Expect = e-135
Identities = 257/594 (43%), Positives = 367/594 (61%), Gaps = 12/594 (2%)
Query: 803 GQTLAFWSQGLSPRAQHKSVYERELMALVQAIQKWRHYLMGRHFIVRTDQKSLKFLTDQR 862
G +AF+S ++PR + YEREL+ LV+A++ WR YL GR FI+RTD SL+FL DQR
Sbjct: 885 GGPVAFFSMPIAPRHAKLAAYERELIGLVKAVRHWRPYLWGRRFIIRTDHYSLRFLLDQR 944
Query: 863 LFS*DQFKWAVKLVGLDFEIQYKPGSENTVADALSRKMMYSALSILTSAEK----EDWNS 918
L + Q WA KL+G DF ++YKPG+ N VADALSR+ + A + + SA +D
Sbjct: 945 LSTIPQHHWASKLLGFDFAVEYKPGTANVVADALSRRDEHLAEAFVLSAPHFSLLDDVRR 1004
Query: 919 ELQQDSKLVKVIQDLLISPTSHPGFEFKKGLLYYKNRLVLSKASNRIPMIISECHDTPTG 978
E+ L ++D +I P + FK GL+ K+R+ + ++S +P ++ H
Sbjct: 1005 EVASTPSLAS-LRDDIIRGAKPPPWAFKDGLIVLKDRVFIPESSPLLPAVLELAHGH--- 1060
Query: 979 GHSGHFRTYKRIASFLYWEGMKTDIKNFVEDCEICQRSKYSTLAPGGLLQPLPIPTQVWM 1038
GH G +T R+ + + + +++FV C CQR+K L P GLLQ LP+P+ VW
Sbjct: 1061 GHEGTQKTMFRLRADFHVPRDRVLVQDFVRACLTCQRNKTEHLQPAGLLQSLPVPSAVWA 1120
Query: 1039 DISMDFVGGLPKVRGKDTVLVVVDRLTKFAHFYALGHPYSAKDVAVLFIKELVKLHGFPT 1098
DI+MDFV GLP+V GK +L VVDR +KFAHF L HPY+A VA F ++V+LHG P+
Sbjct: 1121 DIAMDFVEGLPRVHGKTVILTVVDRFSKFAHFIPLSHPYTATTVAAAFFGDIVRLHGVPS 1180
Query: 1099 TIVSDRDPLFLSNFWKELFKMAGTQLKLSTSYHPQTDGQTEVTNRCLETYLRCFVGPKPK 1158
+IVSDRDP+F S FW ELF++AG QL L++++HPQ+DGQ+EVTN+ + YLRC G +P+
Sbjct: 1181 SIVSDRDPVFTSKFWTELFRLAGVQLNLTSAFHPQSDGQSEVTNKIIAMYLRCLTGDRPR 1240
Query: 1159 QWLDWLPWAEFWFNTNYNSSAGMSPFKALYGRDPPLLLKAGAIPSRVEEVNQLFQQRDGV 1218
QWL WLPWAE+ +NT+Y +S +PF +YGR PP L + + V + Q RD
Sbjct: 1241 QWLRWLPWAEYCYNTSYQASLRTTPFHVVYGRSPPSLRSYEPGSTCLPAVQRSMQDRDQF 1300
Query: 1219 LGELKQNLLKAQHQMKVQADKHRRLVEFNEGDWVYLKLQPYKLKSIATRPCAKLAPRFYG 1278
L ++ L +AQ K DK R + F+ GDWV+L+L + S+ TR KL P+FYG
Sbjct: 1301 LVAIRDRLEQAQQVYKQAYDKKHRELNFDVGDWVWLRLLHRPMASLDTRGRGKLGPKFYG 1360
Query: 1279 PYKILDRVGPVAYKLELPAHSKIHPVFHVSLLKQAL-KPTQQPQPLPPMLNEELELEVVP 1337
PY+I+ +G VAY+L LP +++H VFHV LLK +P PLPP + ++ LE P
Sbjct: 1361 PYQIVACIGSVAYRLRLPPGARLHDVFHVGLLKPFRGEPPSTLPPLPPTQHGQVCLE--P 1418
Query: 1338 EDVIDHREDAQGNLEVLIKWEQLPTCDNTWELAAVIQDKFPLFPLEDKVKLLGG 1391
+ V R A+G +VL++W+ P D +W + +P F LED++ L GG
Sbjct: 1419 QSVSRSRL-ARGVRQVLVQWKNKPAADASWLSLDEFRALYPDFQLEDELLLEGG 1471
Score = 414 bits (1064), Expect = e-113
Identities = 251/706 (35%), Positives = 374/706 (52%), Gaps = 47/706 (6%)
Query: 2 KLEIPIFSGD-DAVGWTQKLERYFAMREVTEDERMQATMVALEGRALSWFQWWERCNPSP 60
KLE P + G D + W + E F ++ E ++ + L G A W+ E + P
Sbjct: 109 KLEFPTYDGKGDPLPWLNRCET-FRGQKTPETRKVWYASLHLIGDAQLWYYRIELNSGEP 167
Query: 61 TWEAFKLAVVRRFQPSMIQNPFELLLSLKQVGTVDEYVEEFEKYAGALKEIDHDFVRGIF 120
+W F V RF P M +P L +L++ GTV+ YV F A E+ +F
Sbjct: 168 SWRRFVQLVHTRFGPPMTDSPLGELTALRRTGTVENYVNSFLALACRDVELSESQQVQLF 227
Query: 121 LNGLKEEIKAEVRLIQKSLL---IEQKNQIVTKKGVGFTRPSSAFRNNNYSKVVTVEPQN 177
GL +K +V L + L I + +G T PS+ R + ++ +
Sbjct: 228 TAGLVNPLKTDVALCRPRSLDDAIMLARAYEQRATLGPTDPSAP-RTGRVPRP-SLPASS 285
Query: 178 NTDQKQDSSSVGSVAMPSRNNAGIDSSRNRGGEFKHLTGAQMREKRDKNLCFRCDEPYSR 237
++S A + + S+ R K L+ A+M ++R + LC+ CDE Y
Sbjct: 286 AASASASTTSADVAASTAAGKQPLVSALPR----KRLSPAEMAQRRSEGLCYNCDEKYVA 341
Query: 238 EHKCRNKQLRMIIMEDDDDADCGEFEDALSGEFNSLQLS-----LCSMAGLTSTK--SWK 290
H+C+ + +I +D D E+ + E +++ L L ++AG+++ K + K
Sbjct: 342 GHRCKKSFVIEVISFPEDTGD----EEDSTPEAHAITLDEPSIFLHALAGISAPKFNTIK 397
Query: 291 MVGQIGNQSIVVLIDCGASHNFISHKLVEQLNLTVAETQTYTVEVGDGYKIRCKGKCSQL 350
+ ++G+Q +V L+D G++HNFI+ + Q ++ + +V V +G ++ G+C
Sbjct: 398 VWARLGSQELVALLDSGSTHNFINDAIAHQASVPLQRRPGLSVAVANGDRVPSPGRCPPQ 457
Query: 351 GIMIQALEIVQNFYLFGLNGMDVVLGIEWLASLGDIKANFGKMELTLKRGKEVYTLKGDP 410
+ I + E +FY L G D+VLG +WL +LG +F + L + T
Sbjct: 458 RVSIGSHEFDIDFYALPLGGYDIVLGAQWLGTLGPTLWDFSRQSLAFGPAHDRVTW---- 513
Query: 411 SLTKSELSYGALMQILLEEGEGLLVHCDTGEKVNKKECEIPEIITGVLLQFDTVFQDPQG 470
T + + + ++ G +++T +L +F +P G
Sbjct: 514 --TSIDAAPAPALAAAIDGQPG-------------------DLMTDLLDVLKDLFTEPHG 552
Query: 471 LPPRRRHDHAIHLKEGAQVPNLRPYKCPHYQKNEVEKLVAEMLEAGVIRPSISPFSSPII 530
LPP R H I L+ G +RPY+ H QK+E+E+ +ML GVIRPS S FSSP +
Sbjct: 553 LPPERHLCHRIRLEAGVSAVAVRPYRYAHIQKDELERQCDDMLRHGVIRPSSSAFSSPAL 612
Query: 531 LVKKKDGGWRLCVDYRALNKVTIPNKFPIPIIEELLDELGGAKVFSKLDLKSGYHQIRMK 590
L+KK DG WR CVDYRALN TI +KFPIP+ EEL DEL GAK F+KLD++SGYHQ+ M
Sbjct: 613 LIKKCDGSWRFCVDYRALNDKTIKDKFPIPVAEELFDELRGAKFFTKLDMRSGYHQVLMH 672
Query: 591 DADIEKTAFRTHEGHYEFLVMPFGLTNAPSTFQSLMNEVLKPYLRKFALVFFDDILVYSP 650
D+ KTAFRTH+G +EFLVMPFGLTNAP+TFQ+LMN+VL P+LR+F LVFFDDIL+YS
Sbjct: 673 PDDVHKTAFRTHQGLFEFLVMPFGLTNAPATFQALMNDVLLPFLRRFVLVFFDDILIYSS 732
Query: 651 DLLTHTTHLQQVLTLLADHALKANRKKCSFGQTSLEYLGHIVSGEG 696
H H++ VL L DH L R KC FG TS+ YLGH++SG+G
Sbjct: 733 SWSEHLRHVRTVLQTLQDHCLHLKRSKCEFGLTSVAYLGHVISGDG 778
>ref|XP_471847.1| OSJNBb0062H02.17 [Oryza sativa (japonica cultivar-group)]
gi|38347666|emb|CAE05600.2| OSJNBa0054D14.1 [Oryza sativa
(japonica cultivar-group)] gi|38346992|emb|CAD40278.2|
OSJNBb0062H02.17 [Oryza sativa (japonica cultivar-group)]
Length = 1629
Score = 474 bits (1219), Expect = e-131
Identities = 242/594 (40%), Positives = 361/594 (60%), Gaps = 8/594 (1%)
Query: 806 LAFWSQGLSPRAQHKSVYERELMALVQAIQKWRHYLMGRHFIVRTDQKSLKFLTDQRLFS 865
LAF S+ L R S YE+E +A++ A+ WR YL F +RTD +SL FLT+QRL +
Sbjct: 997 LAFLSRALGLRHPGLSTYEKESLAIMLAVDHWRPYLQHDEFFIRTDHRSLAFLTEQRLTT 1056
Query: 866 *DQFKWAVKLVGLDFEIQYKPGSENTVADALSR-----KMMYSALSILTSAEKEDWNSEL 920
Q K KL+GL ++I +K G +N+ ADALSR ++ SALS+ D +
Sbjct: 1057 PWQHKALTKLLGLRYKIIFKKGIDNSAADALSRYPGSDRVELSALSVAVPEWINDIVAGY 1116
Query: 921 QQDSKLVKVIQDLLISPTSHPGFEFKKGLLYYKNRLVLSKASNRIPMIISECHDTPTGGH 980
D +Q L I+ + P F + G+LY++NRL + + I++ H GGH
Sbjct: 1117 SSDPDACSKVQTLCINSGAVPNFSLRNGVLYFQNRLWVGHNVDVQQRILANLHTAAVGGH 1176
Query: 981 SGHFRTYKRIASFLYWEGMKTDIKNFVEDCEICQRSKYSTLAPGGLLQPLPIPTQVWMDI 1040
SG TY+R+ W ++ + +V+ C +CQ++K + G+LQPLP+P W +
Sbjct: 1177 SGIQVTYQRVKQLFAWPRLRATVVQYVQACSVCQQAKSEHVKYPGMLQPLPVPDHAWQIV 1236
Query: 1041 SMDFVGGLPKVRGKDTVLVVVDRLTKFAHFYALGHPYSAKDVAVLFIKELVKLHGFPTTI 1100
S+DFV GLPK + +LVVVD+ +K++HF L HP+SA DVA +++ + +LHG P ++
Sbjct: 1237 SLDFVEGLPKSASFNCILVVVDKFSKYSHFVPLTHPFSALDVAEAYMQHIHRLHGLPQSL 1296
Query: 1101 VSDRDPLFLSNFWKELFKMAGTQLKLSTSYHPQTDGQTEVTNRCLETYLRCFVGPKPKQW 1160
+SDRD +F S W LF++AGTQL++S+SYHPQTDGQTE N+CLET+LRCFV P QW
Sbjct: 1297 ISDRDRIFTSTLWTTLFRLAGTQLRMSSSYHPQTDGQTERVNQCLETFLRCFVHACPSQW 1356
Query: 1161 LDWLPWAEFWFNTNYNSSAGMSPFKALYGRDPPLLLKAGAIPSRVEEVNQLFQQRDGVLG 1220
WL AE+W+NT+++S+ G +PF+ LYG P + + R +++ + +R+ +
Sbjct: 1357 SRWLALAEYWYNTSFHSALGTTPFEVLYGHKPRYFGLSASAACRSDDLVEWLHEREKMQA 1416
Query: 1221 ELKQNLLKAQHQMKVQADKHRRLVEFNEGDWVYLKLQPYKLKSIATRPCAKLAPRFYGPY 1280
++ +LL+AQ +MK QAD+HR F GDWVYLKLQP+ +S+ TR KL+ RFYGP+
Sbjct: 1417 LIRDHLLRAQTRMKQQADQHRSERSFAVGDWVYLKLQPFVQQSVVTRANRKLSFRFYGPF 1476
Query: 1281 KILDRVGPVAYKLELPAHSKIHPVFHVSLLKQALKPTQQPQPLPPMLNEELELEVVPEDV 1340
++LD+VG VAY+L+LP+ S IHPV HVS LK+AL PT+Q P+L+ V P +
Sbjct: 1477 QVLDKVGTVAYRLDLPSSSLIHPVVHVSQLKKALAPTEQVHSPLPVLDPTNATHVCPAQI 1536
Query: 1341 IDHREDAQGNL---EVLIKWEQLPTCDNTWELAAVIQDKFPLFPLEDKVKLLGG 1391
+D R +G+ ++ ++W TWE ++ +FP P + GG
Sbjct: 1537 LDRRFIRKGSKLVEQIQVRWTGDAPAATTWENPQELRRRFPTAPAWGQAGTQGG 1590
Score = 408 bits (1048), Expect = e-112
Identities = 253/730 (34%), Positives = 375/730 (50%), Gaps = 42/730 (5%)
Query: 2 KLEIPIFSGDDAVGWTQKLERYFAMREVTEDERMQATMVALEGRALSWFQWWERCNPSPT 61
KL+ P F G D W K E YF + ++ ++ GRA SW + + P
Sbjct: 178 KLDFPKFDGTDPQDWRMKCEHYFDVNNTYPGLWVRVAIIYFSGRAASWLRSTKAHVRFPN 237
Query: 62 WEAFKLAVVRRFQPSMIQNPFELLLSLKQVGTVDEYVEEFEKYAGALKEID--------- 112
WE F A+ +F + + ++Q GTV EY E+F++ L D
Sbjct: 238 WEDFCAALSDKFDRDQHELLIRQMDGIRQSGTVWEYYEQFDELMNKLLVYDPVVNMHYLT 297
Query: 113 HDFVRGIFLNGLKEEIKAEVRLIQKSLLIEQKNQIVTKKGVGFTRPSSAFRNNNYSKVVT 172
H F G++ R I+ +L+++ + + V + + +
Sbjct: 298 HRFTEGLY------------RKIRNVVLLQRPRDLESALAVALLQEEVLETADEVTGKEV 345
Query: 173 VEPQNNTDQKQDSSSVGSVAMPSRN------NAGIDSSRNRGGEFKHLTGAQMR------ 220
+ + N+ + ++ G+ +P+ N GI S + E + +G R
Sbjct: 346 KKSEGNSLGRSVANLRGAYPLPTPPMRSGGINMGIKSEEKKESEVRRSSGTNERLSSLKA 405
Query: 221 EKRDKNLCFRCDEPYSREHKCRNKQLRMIIMEDDDDADCGEFEDALSG-----EFNSLQL 275
++R + LC+ C E +S HKC N +++ +++ ED LS E + +
Sbjct: 406 QRRAQGLCYICAEKWSPTHKCSNT-VQLHAVQELFTVLHESVEDGLSTTDHVVEQTLMAV 464
Query: 276 SLCSMAGLTSTKSWKMVGQIGNQSIVVLIDCGASHNFISHKLVEQLNLTVAETQTYTVEV 335
SL ++ G + +M+GQI + I++L+D G+S +FIS ++ L + + V V
Sbjct: 465 SLQAVQGTETGGCMRMLGQIQGKEILILVDSGSSASFISKRVASSLMGVLEQPVHVQVMV 524
Query: 336 GDGYKIRCKGKCSQLGIMIQALEIVQNFYLFGLNGMDVVLGIEWLASLGDIKANFGKMEL 395
G K+ C + IQ N + LN D++LG++WL + ++ L
Sbjct: 525 AGGAKLHCCSEILNCEWTIQGHVFFTNLKVLELNNYDMILGMDWLMQHSPMTVDWTTKSL 584
Query: 396 TLKRGKEVYTLKGDPSLTK--SELSYGALMQILLEEGEGLLVHCDTGEKVNKKECEIPEI 453
+ L G S T+ + +S L ++ LV + + +E +IPE+
Sbjct: 585 IIAYAGTQIQLYGVRSDTEQCAHISSKQLRELNDRTAVSNLVQFCSVFALEYQE-QIPEV 643
Query: 454 ITGVLLQFDTVFQDPQGLPPRRRHDHAIHLKEGAQVPNLRPYKCPHYQKNEVEKLVAEML 513
+ VL +F +VF +P+GLPP R+ DH I L GA N+RPY+ QKNE+E V EML
Sbjct: 644 VQTVLTEFSSVFDEPKGLPPIRQFDHTIPLLPGAGPVNVRPYRYTPIQKNEIESQVQEML 703
Query: 514 EAGVIRPSISPFSSPIILVKKKDGGWRLCVDYRALNKVTIPNKFPIPIIEELLDELGGAK 573
G+I+PS SPFSSP++LVKKKDG WR CVDYR LN +T+ NK+P+P+I+ELLDEL GA+
Sbjct: 704 SKGIIQPSSSPFSSPVLLVKKKDGSWRFCVDYRHLNAITVKNKYPLPVIDELLDELAGAQ 763
Query: 574 VFSKLDLKSGYHQIRMKDADIEKTAFRTHEGHYEFLVMPFGLTNAPSTFQSLMNEVLKPY 633
FSKLDL+SGYHQIRM D KTAF+TH GH+EF V+PFGLT+AP+TFQ +MN VL
Sbjct: 764 WFSKLDLRSGYHQIRMHPDDEHKTAFQTHHGHFEFRVLPFGLTSAPATFQGVMNSVLATL 823
Query: 634 LRKFALVFFDDILVYSPDLLTHTTHLQQVLTLLADHALKANRKKCSFGQTSLEYLGHIVS 693
LR+ LVF DDIL+YS L H HL+ V +L H LK R KCSF Q L YLGHI+
Sbjct: 824 LRRCVLVFVDDILIYSKSLEEHVQHLKTVFQILLKHQLKVKRTKCSFAQQELAYLGHIIQ 883
Query: 694 GEGGGC*PIK 703
G P K
Sbjct: 884 PNGVSTDPEK 893
>gb|AAP53789.1| hypothetical protein [Oryza sativa (japonica cultivar-group)]
gi|37534400|ref|NP_921502.1| hypothetical protein [Oryza
sativa (japonica cultivar-group)]
Length = 1611
Score = 471 bits (1211), Expect = e-130
Identities = 239/587 (40%), Positives = 359/587 (60%), Gaps = 8/587 (1%)
Query: 802 RGQTLAFWSQGLSPRAQHKSVYERELMALVQAIQKWRHYLMGRHFIVRTDQKSLKFLTDQ 861
+G+ LA++S+ L P+A +SVYE+E +A+++A++KWRHY++G I++TDQ+SLKF+ Q
Sbjct: 1023 KGRPLAYFSKALGPKAAAQSVYEKEAIAILEALKKWRHYILGGSLIIKTDQQSLKFMMSQ 1082
Query: 862 RLFS*DQFKWAVKLVGLDFEIQYKPGSENTVADALSRKMMYSA-----LSILTSAEKEDW 916
RL Q K +KL+ D+ I+YK G EN VADALSR ++++ +D
Sbjct: 1083 RLVEGIQHKLLLKLMEFDYVIEYKSGKENLVADALSRSPNLKEEQCLPITVVVPEWVQDI 1142
Query: 917 NSELQQDSKLVKVIQDLLISPTSHPGFEFKKGLLYYKNRLVLSKASNRIPMIISECHDTP 976
++D K++ + ++ + GLL YK R+ + + + +++ H +
Sbjct: 1143 KRSYEEDIFAHKILSLIETDGDPERHYKLESGLLKYKGRIYVGETTEIRMLLLEAYHASY 1202
Query: 977 TGGHSGHFRTYKRIASFLYWEGMKTDIKNFVEDCEICQRSKYSTLAPGGLLQPLPIPTQV 1036
GGHSG TY RI YW G+K +++++ +C CQ +K + GLL PL +P
Sbjct: 1203 FGGHSGIRATYHRIKQLFYWPGLKKQVEHYIRECPTCQITKAEHIHIPGLLNPLEVPDMA 1262
Query: 1037 WMDISMDFVGGLPKVRGKDTVLVVVDRLTKFAHFYALGHPYSAKDVAVLFIKELVKLHGF 1096
W I+MDF+ GLPK +GKD +LVVVDRLTK+AHF AL HPY+ + V +F+ + KLHG
Sbjct: 1263 WTHITMDFIEGLPKSQGKDVILVVVDRLTKYAHFLALSHPYTVEQVVQIFMDNIHKLHGM 1322
Query: 1097 PTTIVSDRDPLFLSNFWKELFKMAGTQLKLSTSYHPQTDGQTEVTNRCLETYLRCFVGPK 1156
P IV+DRD +F SNF++E+FK +L+ ST++HPQTDGQTE N+CLE+YLR +
Sbjct: 1323 PMVIVTDRDRVFTSNFFQEIFKTQKVKLRFSTAHHPQTDGQTERVNQCLESYLRSMTFQE 1382
Query: 1157 PKQWLDWLPWAEFWFNTNYNSSAGMSPFKALYGRDPPLLLKAGAIPSRVEEVNQLFQQRD 1216
P++W WL AE+W+NT Y++S M+PF+ALYG PP + + + EE + +
Sbjct: 1383 PQKWFSWLALAEWWYNTTYHTSIQMTPFQALYGYPPPQITEFAIPCNMSEEARVTLEDKA 1442
Query: 1217 GVLGELKQNLLKAQHQMKVQADKHRRLVEFNEGDWVYLKLQPYKLKSIATRPCAKLAPRF 1276
+L +LK ++ +AQ ++K ADK R GD VYLKLQPY+ ++ R KL ++
Sbjct: 1443 LILQKLKSSIGEAQRRIKFYADKGRSERTLELGDMVYLKLQPYRQVAMGIRGSLKLRSKY 1502
Query: 1277 YGPYKILDRVGPVAYKLELPAHSKIHPVFHVSLLKQALKPTQQPQPLPPMLNEELELEVV 1336
YGP+K+++++G VAYKL+LP + IHPVFHVS LK+ L P P P + + +++
Sbjct: 1503 YGPFKVIEKMGAVAYKLQLPDGAGIHPVFHVSQLKKHLGARAIPMPNLPAIGPDGQIKTE 1562
Query: 1337 PEDVIDHREDAQGNLEV---LIKWEQLPTCDNTWELAAVIQDKFPLF 1380
P V+ R + N V LI WE L + TWE A+ IQ FP F
Sbjct: 1563 PAAVLQRRMIPRHNEPVTQWLILWENLTPAEATWEDASYIQAAFPNF 1609
Score = 416 bits (1068), Expect = e-114
Identities = 251/727 (34%), Positives = 391/727 (53%), Gaps = 58/727 (7%)
Query: 2 KLEIPIFSGDDAVGWTQKLERYFAMREVTEDERMQATMVALEGRALSWFQWWERCNPSPT 61
+LEI +F+G+D V W ++ E++F + D+ + + L GRA WF+ T
Sbjct: 231 RLEISLFTGEDPVDWLKQCEKFFEITGTPVDQWVNLAVAHLYGRAAKWFRGVGLPWQVIT 290
Query: 62 WEAFKLAVVRRFQPSMIQNPFELLLSLKQVG-TVDEYVEEFEKYAGALKEIDHDFVR--- 117
W + V RF + EL ++KQ G TV++Y+++FE+Y ++ DH +++
Sbjct: 291 WPQWCAMVCTRFSTANTHEAVELFQNVKQYGMTVEQYIDKFEEYMDLVRR-DHPYLQEPY 349
Query: 118 --GIFLNGLKEEIKAEVRLIQKSLLIEQKNQIVTKKGVGFTRPSSAFRNNNYSKVVTVEP 175
F++GL+ +IK +V + L+E S + NY K
Sbjct: 350 FTSCFISGLRGDIKHDVCGQKPQGLLE-----------------SYWYAKNYEKAA---- 388
Query: 176 QNNTDQKQDSSSVGSVAMPSRNNAGIDSSRNRGGEFKHLTGAQMREKRDKNLCFRCDEPY 235
+ ++ +++ + + N G + N+G Q +K+++ C+ C EP+
Sbjct: 389 ----NSRKAAANFNRNRLQTGGNTG-KNVYNKGQP------RQEGDKKEEKKCWFCKEPW 437
Query: 236 SREHKCRNKQ-LRMIIMEDDDDADCGEF---EDALSGEFNS--------------LQLSL 277
H+C+ KQ + +++E+++ + E E+ + GE + +S
Sbjct: 438 FPRHQCKVKQAIHALLVENEESVEVEEDSVEEEEIKGEKQGEKLPEQTENVQEELMSISQ 497
Query: 278 CSMAGLTSTKSWKMVGQIGNQSIVVLIDCGASHNFISHKLVEQLNLTVAETQTYTVEVGD 337
++ GLT ++ ++ ++ + V L+D G++ F+ K + T+ T+ V V
Sbjct: 498 SAVYGLTRPDTFSVMIKVNGKKAVGLVDSGSTTTFMDSKFAIKSQCTLENTKMRKVIVAG 557
Query: 338 GYKIRCKGKCSQLGIMIQALEIVQNFYLFGLNGMDVVLGIEWLASLGDIKANFGKMELTL 397
G +++ + + IQ +F L L D++LG +W+ I + K E+ +
Sbjct: 558 GGELKSELIVPGMEYEIQGESFTNSFNLLSLERYDIILGADWIFKYSPITLDLRKREMKI 617
Query: 398 KRGKEVYTLKGDPSLTKSELSYGALMQILLEEGE-GLLVHCDTGEKVNKKECEIPEIITG 456
+G ++ K M ++++G G ++ + + E IP+ I
Sbjct: 618 TKGGRELEIQDFTKPGKYFQVSNKKMGKMIKKGALGCVIQINAITDQSNVEVGIPKDIQI 677
Query: 457 VLLQFDTVFQDPQGLPPRRRHDHAIHLKEGAQVPNLRPYKCPHYQKNEVEKLVAEMLEAG 516
VL F V ++P+GLPPRR DH I+LK G++ PNLRPY+ PH+QK +E ++ E+
Sbjct: 678 VLQSFPKVLKEPKGLPPRRSCDHVINLKVGSEPPNLRPYRVPHFQKGAMEDIITELFRTQ 737
Query: 517 VIRPSISPFSSPIILVKKKDGGWRLCVDYRALNKVTIPNKFPIPIIEELLDELGGAKVFS 576
IR S SP+ SP ++V+KKDG WRLCVDYR LN TI NKFP+PIIE+LLDEL GAKVFS
Sbjct: 738 EIRISDSPYVSPAVMVRKKDGSWRLCVDYRQLNAQTIKNKFPMPIIEDLLDELHGAKVFS 797
Query: 577 KLDLKSGYHQIRMKDADIEKTAFRTHEGHYEFLVMPFGLTNAPSTFQSLMNEVLKPYLRK 636
KLDL+SGYHQIRM + DI KTAFRTH GHYE+ VMPFGLTNAP+TFQ+LMN+VL P+LRK
Sbjct: 798 KLDLRSGYHQIRMAEGDIPKTAFRTHLGHYEYNVMPFGLTNAPATFQALMNQVLAPFLRK 857
Query: 637 FALVFFDDILVYSPDLLTHTTHLQQVLTLLADHALKANRKKCSFGQTSLEYLGHIVSGEG 696
F LVFF DIL+YS H H++ V+ L+ + L KKC FG + YLGHI+S EG
Sbjct: 858 FVLVFFADILIYSKTQSEHLEHIKLVMQALSANQLVVRLKKCEFGLDRVSYLGHIISSEG 917
Query: 697 GGC*PIK 703
P K
Sbjct: 918 VSTDPKK 924
>emb|CAE01900.2| OSJNBa0059D20.8 [Oryza sativa (japonica cultivar-group)]
gi|50930431|ref|XP_474743.1| OSJNBa0059D20.8 [Oryza
sativa (japonica cultivar-group)]
Length = 1463
Score = 470 bits (1209), Expect = e-130
Identities = 250/593 (42%), Positives = 356/593 (59%), Gaps = 10/593 (1%)
Query: 803 GQTLAFWSQGLSPRAQHKSVYERELMALVQAIQKWRHYLMGRHFIVRTDQKSLKFLTDQR 862
G +AF+S+ + R + + YEREL+ LV A++ WR YL GR F+V+TD SLK+L DQR
Sbjct: 825 GHPVAFFSRPVVLRHRALAAYERELIGLVHAVRHWRPYLWGRRFVVKTDHYSLKYLLDQR 884
Query: 863 LFS*DQFKWAVKLVGLDFEIQYKPGSENTVADALSRKMMYSALSILTSAEKEDWNSEL-- 920
L + Q W KL+G DF ++YKPG+ NTVADALSR+ + SA + D+ S+L
Sbjct: 885 LATIPQHHWVGKLLGFDFAVEYKPGAANTVADALSRRDTEEGAILALSAPRFDFISKLHD 944
Query: 921 -QQDSKLVKVIQDLLISPTSHPGFEFKKGLLYYKNRLVLSKASNRIPMIISECHDTPTGG 979
Q+ + ++D + + T + LL Y + L + AS II H+ G
Sbjct: 945 AQRQDPALTALRDEVSAGTRTGPWALVDDLLQYNSWLYIPPASPLAREIIEATHED---G 1001
Query: 980 HSGHFRTYKRIASFLYWEGMKTDIKNFVEDCEICQRSKYSTLAPGGLLQPLPIPTQVWMD 1039
H G RT R+ + MK ++++V C +CQR K L+P GLL PLP+P VW D
Sbjct: 1002 HEGVKRTMHRLRREFHIPNMKQLVQDWVRSCAVCQRYKSEHLSPAGLLLPLPVPQGVWTD 1061
Query: 1040 ISMDFVGGLPKVRGKDTVLVVVDRLTKFAHFYALGHPYSAKDVAVLFIKELVKLHGFPTT 1099
I++DF+ LP+VRGK +L VVDR +K+ HF L HPYSA+ VA F E+V LHG P +
Sbjct: 1062 IALDFIEALPRVRGKSVILTVVDRFSKYCHFIPLAHPYSAESVAQAFFAEIVHLHGVPQS 1121
Query: 1100 IVSDRDPLFLSNFWKELFKMAGTQLKLSTSYHPQTDGQTEVTNRCLETYLRCFVGPKPKQ 1159
+VSDRDP+F S FW+EL ++ GT+L ++T++HPQ+DGQ+E NR + YLRC G +P+Q
Sbjct: 1122 MVSDRDPIFTSTFWRELMRLMGTKLHMTTAFHPQSDGQSEAANRVIIMYLRCLTGDRPRQ 1181
Query: 1160 WLDWLPWAEFWFNTNYNSSAGMSPFKALYGRDPPLLLKAGAIPSRVEEVNQLFQQRDGVL 1219
WL WLPWAEF FNT Y SS +PF+ +YGRDPP + A +RV V + ++R L
Sbjct: 1182 WLRWLPWAEFIFNTAYQSSLRDTPFRVVYGRDPPSIRSYEAGDTRVAAVAKSMEERAEFL 1241
Query: 1220 GELKQNLLKAQHQMKVQADKHRRLVEFNEGDWVYLKLQPYKLKSIATRPCAKLAPRFYGP 1279
+++ L +AQ K+ DKH R V + GDW L+L+ S+ KL PRFYGP
Sbjct: 1242 FDIRYRLEQAQAVQKLHYDKHHRHVAYQVGDWALLRLRQRPTTSLPQSGTGKLKPRFYGP 1301
Query: 1280 YKILDRVGPVAYKLELPAHSKIHPVFHVSLLKQAL-KPTQQPQPLPPMLNEELELEVVPE 1338
Y+I + + VA +LELPA +++H VFH+ LLK+ P P LPP+ + + E PE
Sbjct: 1302 YRITELINDVAVRLELPAGARLHDVFHIGLLKKFHGPPPGAPPALPPLHHGAIAPE--PE 1359
Query: 1339 DVIDHREDAQGNLEVLIKWEQLPTCDNTWELAAVIQDKFPLFPLEDKVKLLGG 1391
+ R A+G + L++W+ TWE V++ K+P LED++ L G
Sbjct: 1360 RAVRFRL-ARGVRQALVQWKGESPASATWEDIEVLRAKYPALQLEDELSLEEG 1411
Score = 394 bits (1013), Expect = e-108
Identities = 240/705 (34%), Positives = 359/705 (50%), Gaps = 39/705 (5%)
Query: 1 RKLEIPIFSGD-DAVGWTQKLERYFAMREVTEDERMQATMVALEGRALSWFQWWERCNPS 59
+K + P + G D + + K E YF +ER+ L+ +W+ +
Sbjct: 58 KKWDFPRYDGTTDPLLFLNKFEAYFRHHRTMAEERVGMASYHLDDVTQTWYTQLLEDEGT 117
Query: 60 PTWEAFKLAVVRRFQPSMIQNPFELLLSLKQVGTVDEYVEEFEKYAGALKEIDHDFVRGI 119
PTW FK V RF P + P L ++ GTV+EY F+ +D +
Sbjct: 118 PTWGRFKELVNLRFGPPLRSAPLFELSECRRTGTVEEYSNRFQALLPRAGRLDESQRVQL 177
Query: 120 FLNGLKEEIKAEVRLIQKSLLIEQKNQIVTKKGVGFTRPSSAFRNNNYSKVVTVEPQNNT 179
F GL + VR+ L + + + RP+ ++ P
Sbjct: 178 FTGGLLPPLSHAVRIHHPETLAAAMSLARQVELMERDRPAPPPLRAPPRGLLPA-PAPRL 236
Query: 180 DQKQDSSSVGSVAMPSRNNAGIDSSRNRGGEFKHLTGAQMREKRDKNLCFRCDEPYSREH 239
+ + A P+ G D++ R LT +M E+ + LCF C+E ++R H
Sbjct: 237 ALPAPAQQLALPAPPAAAPQGRDAANPR-----RLTPEEMAERCRQGLCFNCNEKFTRGH 291
Query: 240 KCRNKQLRMIIMEDDDDADCGEFEDALSGEFNSLQLSLCSMAGLTSTKSWKMVGQIGNQS 299
++L + + DD A +G+ + SL ++AG+ + ++ +G+ S
Sbjct: 292 NRFCRRLFFVDGVEIDDVAIEGDAAAAAGDTEAPVFSLHAVAGVPIADTIQLQVTVGDAS 351
Query: 300 IVVLIDCGASHNFISHKLVEQLNLTVAETQTYTVEVGDGYKIRCKGKCSQLGIMIQALEI 359
++ L+D G++H+FI + + L + + T V +G ++ C G I
Sbjct: 352 LLALLDGGSTHSFIGEEAARRAGLPIQSSPRMTAIVANGERVACPGVIRDAAFTINGSTF 411
Query: 360 VQNFYLFGLNGMDVVLGIEWLASLGDIKANFGKMELTLKRGKEVYTLKGDPSLTKSEL-S 418
+ ++ L G DVVLG WL +LG I +F + +R + + KG S + + L +
Sbjct: 412 HTDLFVMPLAGFDVVLGTRWLGTLGPIVWDFTSRSMAFQRDGQRFAWKGVASTSTTHLRT 471
Query: 419 YGALMQILLEEGEGLLVHCDTGEKVNKKECEIPEIITGVLLQFDTVFQDPQGLPPRRRHD 478
A LL+E +L+ ++ VF +P GLPP R D
Sbjct: 472 LAAASGTLLDE---------------------------LLVAYEDVFGEPTGLPPPRGRD 504
Query: 479 HAIHLKEGAQVPNLRPYKCPHYQKNEVEKLVAEMLEAGVIRPSISPFSSPIILVKKKDGG 538
HAI LK + +RPY+ P K+E+E+ A M+E GV+R S SPFSSP++LVKK DG
Sbjct: 505 HAIVLKPSSAPVAVRPYRYPAAHKDELERQCAAMIEQGVVRRSDSPFSSPVLLVKKADGS 564
Query: 539 WRLCVDYRALNKVTIPNKFPIPIIEELLDELGGAKVFSKLDLKSGYHQIRMKDADIEKTA 598
WR CVDYRALN +T+ + FPIP++ DEL GA+ F+KLDL+SGYHQ+RM+ D+ KTA
Sbjct: 565 WRFCVDYRALNALTVKDAFPIPVV----DELHGARFFTKLDLRSGYHQVRMRPEDVHKTA 620
Query: 599 FRTHEGHYEFLVMPFGLTNAPSTFQSLMNEVLKPYLRKFALVFFDDILVYSPDLLTHTTH 658
FRTH+G YEFLVMPFGL NAP+TFQ+LMN+VL+P+LR+F LVFFDDIL+YS H H
Sbjct: 621 FRTHDGLYEFLVMPFGLCNAPATFQALMNDVLRPFLRRFVLVFFDDILIYSETWTDHLRH 680
Query: 659 LQQVLTLLADHALKANRKKCSFGQTSLEYLGHIVSGEGGGC*PIK 703
L+ VL++L H L R KC+FG S+ YLGH++S G P K
Sbjct: 681 LRTVLSVLRQHRLFVKRSKCTFGSPSVSYLGHVISEAGVAMDPAK 725
>gb|AAG51464.1| gypsy/Ty3 element polyprotein, putative [Arabidopsis thaliana]
gi|25403233|pir||G86474 probable protein gypsy/Ty3
element polyprotein [imported] - Arabidopsis thaliana
Length = 1447
Score = 466 bits (1200), Expect = e-129
Identities = 244/583 (41%), Positives = 356/583 (60%), Gaps = 32/583 (5%)
Query: 802 RGQTLAFWSQGLSPRAQHKSVYERELMALVQAIQKWRHYLMGRHFIVRTDQKSLKFLTDQ 861
+G LA+ S+ L + H S+YE+EL+A + A++KWRHYL+ HFI++TDQ+SLK+L +Q
Sbjct: 885 KGHPLAYISRQLKGKQLHLSIYEKELLAFIFAVRKWRHYLLPSHFIIKTDQRSLKYLLEQ 944
Query: 862 RLFS*DQFKWAVKLVGLDFEIQYKPGSENTVADALSR----KMMYSALSILTSAEKEDWN 917
RL + Q +W KL+ D+EIQY+ G EN VADALSR ++++ ALSI+ ++
Sbjct: 945 RLNTPVQQQWLPKLLEFDYEIQYRQGKENLVADALSRVEGSEVLHMALSIVECDFLKEIQ 1004
Query: 918 SELQQDSKLVKVIQDLLISPTSHPGFEFKKGLLYYKNRLVLSKASNRIPMIISECHDTPT 977
+ D L +I L P + + + + +L K+++V+ ++ H +
Sbjct: 1005 VAYESDGVLKDIISALQQHPDAKKHYSWSQDILRRKSKIVVPNDVEITNKLLQWLHCSGM 1064
Query: 978 GGHSGHFRTYKRIASFLYWEGMKTDIKNFVEDCEICQRSKYSTLAPGGLLQPLPIPTQVW 1037
GG SG +++R+ S YW+GM DI+ F+ C CQ+ K A GLLQPLPIP ++W
Sbjct: 1065 GGRSGRDASHQRVKSLFYWKGMVKDIQAFIRSCGTCQQCKSDNAAYPGLLQPLPIPDKIW 1124
Query: 1038 MDISMDFVGGLPKVRGKDTVLVVVDRLTKFAHFYALGHPYSAKDVAVLFIKELVKLHGFP 1097
D+SMDF+ GLP GK ++VVVDRL+K AHF AL HPYSA VA F+ + K HG P
Sbjct: 1125 CDVSMDFIEGLPNSGGKSVIMVVVDRLSKAAHFVALAHPYSALTVAQAFLDNVYKHHGCP 1184
Query: 1098 TTIVSDRDPLFLSNFWKELFKMAGTQLKLSTSYHPQTDGQTEVTNRCLETYLRCFVGPKP 1157
T+IVSDRD LF S+FWKE FK+ G +L++S++YHPQ+DGQTEV NRCLE YLRC +P
Sbjct: 1185 TSIVSDRDVLFTSDFWKEFFKLQGVELRMSSAYHPQSDGQTEVVNRCLENYLRCMCHARP 1244
Query: 1158 KQWLDWLPWAEFWFNTNYNSSAGMSPFKALYGRDPPLLLKAGAIPSRVEEVNQLFQQRDG 1217
W WLP AE+W+NTNY+SS+ M+PF+ +YG+ PP+ L S+V V + Q+R+
Sbjct: 1245 HLWNKWLPLAEYWYNTNYHSSSQMTPFELVYGQAPPIHLPYLPGKSKVAVVARSLQEREN 1304
Query: 1218 VLGELKQNLLKAQHQMKVQADKHRRLVEFNEGDWVYLKLQPYKLKSIATRPCAKLAPRFY 1277
+L LK +L++AQH+MK AD+HR F+ GD+VY+KLQPY+ +S+ R KL+P+++
Sbjct: 1305 MLLFLKFHLMRAQHRMKQFADQHRTERTFDIGDFVYVKLQPYRQQSVVLRVNQKLSPKYF 1364
Query: 1278 GPYKILDRVGPVAYKLELPAHSKIHPVFHVSLLKQALKPTQQPQPLPPMLNEELELEVVP 1337
GPYKI+++ G V ++ TQ P LP + E P
Sbjct: 1365 GPYKIIEKCGEV-------------------MVGNVTTSTQLPSVLPDI------FEKAP 1399
Query: 1338 EDVIDH---REDAQGNLEVLIKWEQLPTCDNTWELAAVIQDKF 1377
E +++ + + VL+KW P + TW+ Q KF
Sbjct: 1400 EYILERKLVKRQGRAATMVLVKWIGEPVEEATWKFLFDRQQKF 1442
Score = 363 bits (932), Expect = 2e-98
Identities = 232/717 (32%), Positives = 376/717 (52%), Gaps = 81/717 (11%)
Query: 2 KLEIPIFSGDDAVGWTQKLERYFAMREVTEDERMQATMVALEGRALSWFQWWERCNPSP- 60
K++ P F G W K+E +F + E+ +++ + + A +W + +
Sbjct: 116 KIDFPRFDGSRINEWLFKVEEFFGVDFTPEEMKVKMVAIHFDSHAATWHHSFIQSGIGLD 175
Query: 61 ---TWEAFKLAVVRRFQPSMIQNPFELLLSLKQVGTVDEYVEEFEKYAGALKEIDHDFVR 117
W + + RF+ + +P L L++ + EY ++FE L + +++
Sbjct: 176 VFFNWPEYVKLLKDRFEDAC-DDPMAELKKLQETDGIVEYHQQFELIKVRLN-LSEEYLV 233
Query: 118 GIFLNGLKEEIKAEVRLIQKSLLIEQKNQIVTKKGVGFTRPSSAFRNNNYSKVVTVEPQN 177
++L GL+ + + VR+ + + + R Y +
Sbjct: 234 SVYLAGLRTDTQMHVRMFEPKTVRD------------------CLRLGKYYE-------- 267
Query: 178 NTDQKQDSSSVGSVAMPSRNNAGIDSSRNRGGEFKHLTGAQMREKRDK-NLCFRCDEPYS 236
K+ SS S GG ++ + ++ +K D LC+ CDE ++
Sbjct: 268 RAHPKKTVSSTWS-----------QKGTRSGGSYRPVK--EVEQKSDHLGLCYFCDEKFT 314
Query: 237 REHKCRNKQLRMIIMEDDDDADCGEFEDA---LSGEFNSL----QLSLCSMAGLTSTKSW 289
EH +K+ ++ M+ D+ EFEDA LS + + Q+S+ +++G++ K+
Sbjct: 315 PEHYLVHKKTQLFRMDVDE-----EFEDAVEVLSDDDHEQKPMPQISVNAVSGISGYKTM 369
Query: 290 KMVGQIGNQSIVVLIDCGASHNFISHKLVEQLNLTVAETQTYTVEVGDGYKIRCKGKCSQ 349
+ G + + + +LID G++HNFI + +L V V V DG K+ G+
Sbjct: 370 GVKGTVDKRDLFILIDSGSTHNFIDSTVAAKLGCHVESAGLTKVAVADGRKLNVDGQIKG 429
Query: 350 LGIMIQALEIVQNFYLFGLNGMDVVLGIEWLASLGDIKANFGKMELTLKRGKEVYTLKGD 409
+Q+ + L L G+D+VLG++WL +LG I F K+E+ + L G
Sbjct: 430 FTWKLQSTTFQSDILLIPLQGVDMVLGVQWLETLGRISWEFKKLEMQFFYKNQRVWLHGI 489
Query: 410 PSLTKSELSYGALMQILLEEGEGLLVHCDTGEKVNKKECEIPEI------------ITGV 457
+ + ++ L + ++ + +V C E V+ +E EI I + +
Sbjct: 490 ITGSVRDIKAHKLQKTQADQIQLAMV-C-VREVVSDEEQEIGSISALTSDVVEESVVQNI 547
Query: 458 LLQFDTVFQDPQGLPP-RRRHDHAIHLKEGAQVPNLRPYKCPHYQKNEVEKLVAEMLEAG 516
+ +F VF +P LPP R +HDH I L EGA N RPY+ +QK+E++K+V +M+++G
Sbjct: 548 VEEFPDVFAEPTDLPPFREKHDHKIKLLEGANPVNQRPYRYVVHQKDEIDKIVQDMIKSG 607
Query: 517 VIRPSISPFSSPIILVKKKDGGWRLCVDYRALNKVTIPNKFPIPIIEELLDELGGAKVFS 576
I+ S SPF+SP++LVKKKDG WRLCVDY LN +T+ ++F IP+IE+L+DELGG+ VFS
Sbjct: 608 TIQVSSSPFASPVVLVKKKDGTWRLCVDYTELNGMTVKDRFLIPLIEDLMDELGGSVVFS 667
Query: 577 KLDLKSGYHQIRMKDADIEKTAFRTHEGHYEFLVMPFGLTNAPSTFQSLMNEVLKPYLRK 636
K+DL++GYHQ+RM DI+KTAF+TH GH+E+LVM FGLTNAP+TFQSLMN V + +LRK
Sbjct: 668 KIDLRAGYHQVRMDPDDIQKTAFKTHNGHFEYLVMLFGLTNAPATFQSLMNSVFRDFLRK 727
Query: 637 FALVFFDDILVYSPDLLTHTTHLQQVLTLLADHALKANRKKCSFGQTSLEYLGHIVS 693
F LVFFDDIL+YS + H HL+ V ++ H L F + S E+LGH +S
Sbjct: 728 FVLVFFDDILIYSSSIEEHKEHLRLVFEVMRLHKL--------FAKGSKEHLGHFIS 776
>gb|AAL75999.1| putative polyprotein [Zea mays]
Length = 2749
Score = 466 bits (1198), Expect = e-129
Identities = 246/601 (40%), Positives = 368/601 (60%), Gaps = 32/601 (5%)
Query: 806 LAFWSQGLSPRAQHKSVYERELMALVQAIQKWRHYLMGRHFIVRTDQKSLKFLTDQRLFS 865
+AF+S+ R + YEREL+ LVQA++ WR YL GRHF VRTD SLK+L DQRL +
Sbjct: 1253 VAFFSRPFVTRHLKLAAYERELIGLVQAVRHWRPYLWGRHFAVRTDHYSLKYLLDQRLST 1312
Query: 866 *DQFKWAVKLVGLDFEIQYKPGSENTVADALSRK----------MMYSALSILTSAEKED 915
Q +W KL G DFE++Y+PG N ADALSR+ + +A ++ S
Sbjct: 1313 VPQHQWLSKLFGFDFEVEYRPGRLNVAADALSRRDAELLQPSAGELGAAAALALSGPSFA 1372
Query: 916 WNSELQQ-------DSKLVKVIQD-LLISPTSHPGFEFKKGLLYYKNRLVLSKASNRIPM 967
+ ++++ S+L + +QD L +P + + GLL + +R+ + +
Sbjct: 1373 FLDDIRRATATSPDSSRLCQQLQDGTLTAP-----WRLEDGLLLHGSRIYVPNHGDLRHQ 1427
Query: 968 IISECHDTPTGGHSGHFRTYKRIASFLYWEGMKTDIKNFVEDCEICQRSKYSTLAPGGLL 1027
I H + GH G +T R+ + Y G +T + ++V C CQR+K TL P GLL
Sbjct: 1428 AILLAH---SAGHEGIQKTLHRLRAEFYVPGDRTLVADWVRTCTTCQRNKTETLQPAGLL 1484
Query: 1028 QPLPIPTQVWMDISMDFVGGLPKVRGKDTVLVVVDRLTKFAHFYALGHPYSAKDVAVLFI 1087
QPL +P+QVW DISMDF+ GLPKV GK +L VVDR +K+AHF LGHPY+A VA F
Sbjct: 1485 QPLQVPSQVWADISMDFIEGLPKVGGKSVILTVVDRFSKYAHFIPLGHPYTAASVARAFF 1544
Query: 1088 KELVKLHGFPTTIVSDRDPLFLSNFWKELFKMAGTQLKLSTSYHPQTDGQTEVTNRCLET 1147
+V+LHGFP++IVSDRDP+F + W++LFK AG L++ST++HPQTDGQ+EV N+ +
Sbjct: 1545 DGIVRLHGFPSSIVSDRDPVFTGHVWRDLFKCAGVSLRMSTAFHPQTDGQSEVVNKVIAM 1604
Query: 1148 YLRCFVGPKPKQWLDWLPWAEFWFNTNYNSSAGMSPFKALYGRDPPLLLKAGAIPSRVEE 1207
YLRC G +P+ W+DWL WAE+ +NT+++++ +PF+ +YGR PP +L A +R
Sbjct: 1605 YLRCVTGDRPRAWVDWLSWAEYCYNTSFHTALRATPFEVVYGRPPPPILPYQAGSARTAA 1664
Query: 1208 VNQLFQQRDGVLGELKQNLLKAQHQMKVQADKHRRLVEFNEGDWVYLKLQPYKLKSIATR 1267
+L + RD +L E++Q L++AQ K D R +E +GDWV+L+L ++S+ R
Sbjct: 1665 AEELLRDRDNILAEVRQRLVQAQQLSKRYYDAGHRDMELADGDWVWLRLLHRPVQSLEPR 1724
Query: 1268 PCAKLAPRFYGPYKILDRVGPVAYKLELPAHSKIHPVFHVSLLKQAL-KPTQQPQPLPPM 1326
KL PR+ GP+++L+R+G VAY+LELP +++H VFHV LLK+ +P +Q LPP+
Sbjct: 1725 AKGKLGPRYAGPFRVLERIGKVAYRLELPEGARLHDVFHVGLLKRHKGEPPEQRAGLPPV 1784
Query: 1327 LNEELELEVVPEDV-IDHREDAQGNLEVLIKWEQLPTCDNTWELAAVIQDKFPLFPLEDK 1385
N L +P + + + +G +L++W+ L + TWE + +P F LED+
Sbjct: 1785 QNGRL----LPAPLKVLRAQQRRGTWHILVQWQGLSPEEATWEPLDDFRGLYPDFQLEDE 1840
Query: 1386 V 1386
+
Sbjct: 1841 L 1841
Score = 429 bits (1104), Expect = e-118
Identities = 253/713 (35%), Positives = 372/713 (51%), Gaps = 59/713 (8%)
Query: 2 KLEIPIFSGD-DAVGWTQKLERYFAMREVTEDERMQATMVALEGRALSWFQWWERCNPSP 60
K++ P + G D + W + E++F + +R L+G A +W+ E+ P
Sbjct: 472 KIDFPTYDGSVDPLNWLNQCEQFFRGQRTLVTDRTWLASYHLKGAAQTWYYALEQDEGMP 531
Query: 61 TWEAFKLAVVRRFQPSMIQNPFELLLSLKQVGTVDEYVEEFEKYAGALKEIDHDFVRGIF 120
TW FK RF P + L L TV +Y + F G +++D +F
Sbjct: 532 TWGRFKEVCTLRFGPPVRGTRLSELARLPFTSTVQDYADRFNAMLGHTRKLDAQQKAELF 591
Query: 121 LNGLKEEIKAEVRL-----IQKSLLIEQKNQIVTKKGVGFTRPSSAFRNNNYSKVVTVEP 175
+ GL + I+A+V + +Q ++ + + + ++ T P A + P
Sbjct: 592 VGGLPDHIRADVAIRDPQDLQSAMYLARAFE---QRAAAQTTPPPARGFRQSRPGLPAPP 648
Query: 176 QNNTDQKQDSSSVGSVAMPSRNNAGIDSSRNRGGEFKHLTGAQMREKRDKNLCFRCDEPY 235
+ T ++ A P+R F+ LT A+ +E+R + LCF CDEPY
Sbjct: 649 RPLTAPPTAAAQPAGTAAPAR-------------PFRRLTPAEQQERRRQGLCFNCDEPY 695
Query: 236 SREHKCRNKQLRMIIMEDDDDADCGEFEDALSGEFNSLQ------------LSLCSMAGL 283
R H C R+ +E+DD D E+ + Q +SL ++AG+
Sbjct: 696 VRGHVCP----RLFYLENDDYIDDEPQEEGADLQIALEQEPPSRAAAIIPTVSLHALAGV 751
Query: 284 TSTKSWKMVGQIGNQSIVVLIDCGASHNFISHKLVEQLNLTVAETQTYTVEVGDGYKIRC 343
+ + + I +V L+D G++ NF+S L+ +L L T V+V +G I C
Sbjct: 752 RTPNAMLLPVSINGHRLVALVDSGSTTNFMSVGLMSRLQLPSTPHPTIKVQVANGDNIPC 811
Query: 344 KGKCSQLGIMIQALEIVQNFYLFGLNGMDVVLGIEWLASLGDIKANFGKMELTLKRGKEV 403
+G + + + + + L DV+LG E+L LG I + ++ ++ +G
Sbjct: 812 QGMARSVDLRVGTEQFSIDCIGLTLGTFDVILGFEFLRLLGPILWDCDRLSMSFTKGGRH 871
Query: 404 YTLKGDPSLTKSELSYGALMQILLEEGEGLLVHCDTGEKVNKKECEIPEIITGVLLQFDT 463
G GA + + ++ T ++ +L QF+
Sbjct: 872 IIWSG----------LGAPGAVPPQPAACVVSSTPT-----------QPLLDDLLRQFEL 910
Query: 464 VFQDPQGLPPRRRHDHAIHLKEGAQVPNLRPYKCPHYQKNEVEKLVAEMLEAGVIRPSIS 523
VF +PQGLPP R +DH IHL GA +RPY+ P QK+E+E+ + ML G+IRPS S
Sbjct: 911 VFAEPQGLPPARPYDHRIHLLPGAAPVAVRPYRYPQLQKDELERQCSAMLAQGIIRPSTS 970
Query: 524 PFSSPIILVKKKDGGWRLCVDYRALNKVTIPNKFPIPIIEELLDELGGAKVFSKLDLKSG 583
PFS+P++LV+K D WR C+DYRALN T +KFPIP+++ELLDEL GA F+KLDL+SG
Sbjct: 971 PFSAPVLLVRKPDNSWRFCIDYRALNAKTSKDKFPIPVVDELLDELHGAHFFTKLDLRSG 1030
Query: 584 YHQIRMKDADIEKTAFRTHEGHYEFLVMPFGLTNAPSTFQSLMNEVLKPYLRKFALVFFD 643
YHQ+RM AD+EKTAFRTHEGHYEFLVMPFGL+NAP+TFQ+LMN+VL+PYLRK+ LVFFD
Sbjct: 1031 YHQVRMHPADVEKTAFRTHEGHYEFLVMPFGLSNAPATFQALMNDVLRPYLRKYVLVFFD 1090
Query: 644 DILVYSPDLLTHTTHLQQVLTLLADHALKANRKKCSFGQTSLEYLGHIVSGEG 696
DIL+YS H H+ VL L DH L R KCSFG S+ YLGH++S G
Sbjct: 1091 DILIYSKTWAEHLQHISIVLHALRDHQLHLKRSKCSFGARSVAYLGHVISAAG 1143
>gb|AAP54661.1| putative plant disease resistance polyprotein [Oryza sativa (japonica
cultivar-group)] gi|37536144|ref|NP_922374.1| putative
plant disease resistance polyprotein [Oryza sativa
(japonica cultivar-group)] gi|10122041|gb|AAG13430.1|
putative plant disease resistance polyprotein [Oryza
sativa (japonica cultivar-group)]
Length = 921
Score = 464 bits (1194), Expect = e-129
Identities = 247/592 (41%), Positives = 356/592 (59%), Gaps = 12/592 (2%)
Query: 799 LDARGQTLAFWSQGLSPRAQHKSVYERELMALVQAIQKWRHYLMGRHFIVRTDQKSLKFL 858
L +G +A++S+ L P Q S+YE+E +A++ + KWR YL FI++TD KSL L
Sbjct: 309 LSQQGHPIAYYSKTLGPVNQKLSIYEKEFLAIMMVVDKWRCYLQRGPFIIKTDHKSLCHL 368
Query: 859 TDQRLFS*DQFKWAVKLVGLDFEIQYKPGSENTVADALSR---KMMYSALSILTSAEKED 915
D+ L + Q K KL+GL + QYK G +N VADALSR + ALS++ ++
Sbjct: 369 DDEILGTELQQKAMTKLMGLQYSFQYKRGVDNIVADALSRMPSSSQFCALSVVQPIWIQE 428
Query: 916 WNSELQQDSKLVKVIQDLLISPTSHPGFEFKKGLLYYKNRLVLSKASNRIPMIISECHDT 975
+ D + +++ +L + + G+ +G++ ++N++ + + +I H +
Sbjct: 429 VINSYTVDPQAQQLLAELAVHSPNSQGYSLTQGIIRFQNKIWIGSNAGLHTKLIQAFHAS 488
Query: 976 PTGGHSGHFRTYKRIASFLYWEGMKTDIKNFVEDCEICQRSKYSTLAPGGLLQPLPIPTQ 1035
GGHSG TY +I W G+K D++NFV+ C++CQ++K+ GLL PLPIP +
Sbjct: 489 ALGGHSGIAATYHQIKKLFAWPGLKLDVENFVKQCQVCQQAKHEHCRLPGLLAPLPIPKE 548
Query: 1036 VWMDISMDFVGGLPKVRGKDTVLVVVDRLTKFAHFYALGHPYSAKDVAVLFIKELVKLHG 1095
W DISMDF+ GLP+ G + +LVVVDR TK+A+F L HP++A VA L K + K HG
Sbjct: 549 AWQDISMDFIEGLPRSDGYNAILVVVDRFTKYANFIPLCHPFTASQVAHLVDKTVFKTHG 608
Query: 1096 FPTTIVSDRDPLFLSNFWKELFKMAGTQLKLSTSYHPQTDGQTEVTNRCLETYLRCFVGP 1155
P +IVSDRD LF S FW LF TQL++ST+YHPQ DGQTE N+CLE YLRC
Sbjct: 609 IPRSIVSDRDRLFTSKFWTTLFATWDTQLQMSTAYHPQIDGQTERVNQCLEMYLRCMTQA 668
Query: 1156 KPKQWLDWLPWAEFWFNTNYNSSAGMSPFKALYGRDPPLLLKAGAIPSRVEEVNQLFQQR 1215
PK+W W+ AEFW+NTNY++S G SP KAL+G DP + + +V + +R
Sbjct: 669 NPKKWSHWIHLAEFWYNTNYHTSLGCSPHKALFGVDPHYSQVPDLTLATLPDVVDVQTER 728
Query: 1216 DGVLGELKQNLLKAQHQMKVQADKHRRLVEFNEGDWVYLKLQPYKLKSIATRPCAKLAPR 1275
+ L+Q L +AQ +MK +ADK R F GD V+LKLQPY S+ RP KLA +
Sbjct: 729 QHLSEFLQQQLTRAQLRMKNKADKGRSDRVFAVGDAVFLKLQPYAQSSVVNRPYPKLAYK 788
Query: 1276 FYGPYKILDRVGPVAYKLELPAHSKIHPVFHVSLLKQAL---KPTQQPQPLPPMLNEELE 1332
F+GP+ +L+R+G AY+L+LPA S +HPVFHVS LK + P P P +L+
Sbjct: 789 FFGPFTVLERIGVAAYRLDLPASSTVHPVFHVSQLKAQVPDHTPVYTSLPSPVVLD---A 845
Query: 1333 LEVVPEDVIDHREDAQGN---LEVLIKWEQLPTCDNTWELAAVIQDKFPLFP 1381
+VVPE +++ R +GN ++VL+KW LP TWE V++ +FP P
Sbjct: 846 ADVVPEAILERRLVKRGNAAHVQVLLKWSLLPADHATWEDYHVVKTRFPDAP 897
>gb|AAP52878.1| putative retroelement [Oryza sativa (japonica cultivar-group)]
gi|37532578|ref|NP_920591.1| putative retroelement [Oryza
sativa (japonica cultivar-group)]
gi|15217201|gb|AAK92545.1| Putative retroelement [Oryza
sativa]
Length = 1476
Score = 459 bits (1182), Expect = e-127
Identities = 240/589 (40%), Positives = 354/589 (59%), Gaps = 8/589 (1%)
Query: 806 LAFWSQGLSPRAQHKSVYERELMALVQAIQKWRHYLMGRHFIVRTDQKSLKFLTDQRLFS 865
LAF+S+ ++PR + + YEREL+ LV AI+ WR YL GR F+VRTD SLK+L DQRL +
Sbjct: 849 LAFFSRPVAPRHRALAAYERELIGLVLAIRHWRPYLWGRAFVVRTDHYSLKYLLDQRLAT 908
Query: 866 *DQFKWAVKLVGLDFEIQYKPGSENTVADALSRKMMYSALSILTSAEKEDWNSEL---QQ 922
Q W KL+G DF ++YK G+ N VADALSR+ + SA + D+ L Q
Sbjct: 909 IPQHHWVGKLLGFDFTVEYKSGASNVVADALSRRDTDEGAVLALSAPRFDYIERLRAAQT 968
Query: 923 DSKLVKVIQDLLISPTSHPGFEFKKGLLYYKNRLVLSKASNRIPMIISECHDTPTGGHSG 982
+ I+D + + T + + G++ + +RL + +S + I++ H T GH G
Sbjct: 969 TEPALVAIRDAIQAGTRSAPWALRDGMVMFDSRLYIPPSSPLLHEILAAIH---TDGHEG 1025
Query: 983 HFRTYKRIASFLYWEGMKTDIKNFVEDCEICQRSKYSTLAPGGLLQPLPIPTQVWMDISM 1042
RT R+ + M+ ++ FV C+ CQR+K L PGGLL PLP+PT VW DI +
Sbjct: 1026 VQRTLHRLRRDFHSPAMRRVVQEFVRACDTCQRNKSEHLHPGGLLLPLPVPTTVWADIGL 1085
Query: 1043 DFVGGLPKVRGKDTVLVVVDRLTKFAHFYALGHPYSAKDVAVLFIKELVKLHGFPTTIVS 1102
DFV LP+V GK +L VVDR +K+ HF L HPY+A+ VA F ++V+LHG P ++VS
Sbjct: 1086 DFVEALPRVGGKTVILTVVDRFSKYCHFIPLAHPYTAESVAQAFYADIVRLHGIPQSMVS 1145
Query: 1103 DRDPLFLSNFWKELFKMAGTQLKLSTSYHPQTDGQTEVTNRCLETYLRCFVGPKPKQWLD 1162
DRDP+F S+FW+EL ++ GT++ ++T+ HPQ+DGQTE N+ + YLRCF G +P+QW+
Sbjct: 1146 DRDPVFTSSFWRELMRLTGTKMHMTTAIHPQSDGQTEAANKVIVMYLRCFTGDRPRQWVR 1205
Query: 1163 WLPWAEFWFNTNYNSSAGMSPFKALYGRDPPLLLKAGAIPSRVEEVNQLFQQRDGVLGEL 1222
WLPWAE+ +NT Y +S +PF+ +YGRDPP++ +RV V + RD L ++
Sbjct: 1206 WLPWAEYIYNTAYQTSLRDTPFRVVYGRDPPIIRSYEPGETRVAAVARSMADRDEFLADV 1265
Query: 1223 KQNLLKAQHQMKVQADKHRRLVEFNEGDWVYLKLQPYKLKSIATRPCAKLAPRFYGPYKI 1282
+ L +AQ K DK R V + GD V L+L+ S+ KL PR++GPY++
Sbjct: 1266 RYRLEQAQATHKKYYDKGHRAVSYEVGDLVLLRLRHRAPASLPQVSKGKLKPRYFGPYRV 1325
Query: 1283 LDRVGPVAYKLELPAHSKIHPVFHVSLLKQALKPTQQPQPLPPMLNEELELEVVPEDVID 1342
++ + PVA +LELP +K+H VFHV LLK+ + P P ++ ++ PE V
Sbjct: 1326 VEVINPVAVRLELPPRAKLHDVFHVGLLKKFVGAAPPSPPALPAVHHG-AIDPEPERVTR 1384
Query: 1343 HREDAQGNLEVLIKWEQLPTCDNTWELAAVIQDKFPLFPLEDKVKLLGG 1391
R A+G +VL+ W+ TWE ++++P F LED++ L G
Sbjct: 1385 SRL-ARGVRQVLVHWKGESAASATWEDLDTFKERYPAFQLEDELALEEG 1432
Score = 415 bits (1066), Expect = e-114
Identities = 253/705 (35%), Positives = 361/705 (50%), Gaps = 32/705 (4%)
Query: 4 EIPIFSGD-DAVGWTQKLERYFAMREVTEDERMQATMVALEGRALSWFQWWERCNPSPTW 62
E P + G D + + + E +F + V ER L+ A W+ + +PTW
Sbjct: 69 EFPKYDGKTDPLAFINRCESFFIQQHVIPAERTWMASYNLQDGAQLWYMHVQDNEGTPTW 128
Query: 63 EAFKLAVVRRFQPSMIQNPFELLLSLKQVGTVDEYVEEFEKYAGALKEIDHDFVRGIFLN 122
E FK + R+ P + P L + ++ TV++Y + F+ ++ +F
Sbjct: 129 ERFKELLNLRYGPPLRSVPLFELSACRRTSTVEDYQDRFQALLPRAGRLEEAQQVQLFTG 188
Query: 123 GLKEEIKAEVRLIQKSLLIEQKNQIVTKKGVGFTRPSSAFRNNNYSKVVTVEPQNNTDQK 182
GL + SL ++Q+ ++ + R Y T +
Sbjct: 189 GLLPPL---------SLQVQQQKPASLEEAMSLARQFELMEP--YLFPATTSARGVLPTP 237
Query: 183 QDSSSVGSVAMPSRNNAGIDSSRNRGGEFKHLTGAQMREKRDKNLCFRCDEPYSREHKCR 242
S G V P+ ++ G K L+ AQ E+R LC+ CDE YSR H
Sbjct: 238 APRPSTGPVVKPAPATVTVE-----GRPVKRLSQAQQEERRRLGLCYNCDEKYSRSHNKV 292
Query: 243 NKQLRMI----IMEDDDDADCGEFEDALSGEFNSLQLSLCSMAGLTSTKSWKMVGQIGNQ 298
K+L + I E DD + +D + SL ++AG+ K + +G
Sbjct: 293 CKRLFFVEGGAIEEGDDTVE----DDTEEATVEAPVFSLHAVAGIPLGKPILLQVTLGAA 348
Query: 299 SIVVLIDCGASHNFISHKLVEQLNLTVAETQTYTVEVGDGYKIRCKGKCSQLGIMIQALE 358
S+V L+D G++HNFI + L V T V +G K+ C G + I IQ +
Sbjct: 349 SLVALVDTGSTHNFIGEDAALRTGLPVQPRPRLTATVANGEKVSCPGVLRRAPITIQGMA 408
Query: 359 IVQNFYLFGLNGMDVVLGIEWLASLGDIKANFGKMELTLKRGKEVYTLKGDPSLTKSELS 418
+ Y+ L G D+VLG +W+A LG A + G + +G +S
Sbjct: 409 FDVDLYVMPLAGYDMVLGTQWMAHLGTTIA------WDVTTGTVSFQHQGRTVSWQSLPP 462
Query: 419 YGALMQILLEEGEGLLVHCDTGEKVNKKECEIPEIITGVLLQFDTVFQDPQGLPPRRRHD 478
+ + G L+ + E P ++ G+L FD VF +P+GLPP R D
Sbjct: 463 HQRADVHAVSTGTSLVAATGSSSSTPAPTTE-PALLDGLLGSFDDVFAEPRGLPPPRGRD 521
Query: 479 HAIHLKEGAQVPNLRPYKCPHYQKNEVEKLVAEMLEAGVIRPSISPFSSPIILVKKKDGG 538
HAIHL GA +RPY+ P K+E+E+ A M+E G+IR S S FSSP++LVKK DG
Sbjct: 522 HAIHLLPGAPPVAVRPYRYPVAHKDELERQCAVMMEQGLIRRSTSAFSSPVLLVKKADGS 581
Query: 539 WRLCVDYRALNKVTIPNKFPIPIIEELLDELGGAKVFSKLDLKSGYHQIRMKDADIEKTA 598
WR CVDYRALN +TI + +PIP+++ELLDEL GAK F+KLDL+SGYHQ+RM+ D+ KTA
Sbjct: 582 WRFCVDYRALNAITIKDAYPIPVVDELLDELHGAKFFTKLDLRSGYHQVRMRAEDVAKTA 641
Query: 599 FRTHEGHYEFLVMPFGLTNAPSTFQSLMNEVLKPYLRKFALVFFDDILVYSPDLLTHTTH 658
FRTH+G YEFLVMPFGL NAP+TFQ+LMN++L+ YLR+F LVFFDDIL+YS H H
Sbjct: 642 FRTHDGLYEFLVMPFGLCNAPATFQALMNDILRIYLRRFVLVFFDDILIYSNTWADHLRH 701
Query: 659 LQQVLTLLADHALKANRKKCSFGQTSLEYLGHIVSGEGGGC*PIK 703
++ VL LL H L R KC+FG +S+ YLGHI+ G P K
Sbjct: 702 IRAVLLLLRQHRLFVKRSKCAFGVSSISYLGHIIGATGVSMDPAK 746
>ref|NP_908986.1| putative polyprotein [Oryza sativa (japonica cultivar-group)]
Length = 1382
Score = 454 bits (1168), Expect = e-125
Identities = 245/589 (41%), Positives = 351/589 (58%), Gaps = 13/589 (2%)
Query: 806 LAFWSQGLSPRAQHKSVYERELMALVQAIQKWRHYLMGRHFIVRTDQKSLKFLTDQRLFS 865
+AF+S+ ++PR + + YEREL+ V A++ WR YL GR F+V+TD SLK+L DQRL +
Sbjct: 762 VAFFSRPVAPRHRALAAYERELIGFVHAVRHWRPYLWGRRFVVKTDHYSLKYLLDQRLAT 821
Query: 866 *DQFKWAVKLVGLDFEIQYKPGSENTVADALSRKMMYSALSILT-SAEKEDWNSELQQ-- 922
Q W KL+G DF ++YKPG N VADALSR+ +IL SA + D+ L+
Sbjct: 822 IPQHHWVGKLLGFDFTVEYKPGHANAVADALSRRDTPEDGTILALSAPRFDFVDRLRHAQ 881
Query: 923 --DSKLVKVIQDLLISPTSHPGFEFKKGLLYYKNRLVLSKASNRIPMIISECHDTPTGGH 980
D LV + ++L + P + G++ Y RL + AS +P +++ H+ GH
Sbjct: 882 TTDPALVAMHEELTSGSQALP-WAAVDGMIQYSGRLYIPPASPLLPELMAAVHEE---GH 937
Query: 981 SGHFRTYKRIASFLYWEGMKTDIKNFVEDCEICQRSKYSTLAPGGLLQPLPIPTQVWMDI 1040
G RT R+ ++ MK +++ V C CQR K L P GLL PLP+P VW DI
Sbjct: 938 EGVQRTLHRLRRDFHFPNMKQLVQDLVRACPTCQRYKSEHLHPAGLLLPLPVPQGVWTDI 997
Query: 1041 SMDFVGGLPKVRGKDTVLVVVDRLTKFAHFYALGHPYSAKDVAVLFIKELVKLHGFPTTI 1100
++DFV LP+VRGK +L VVDR +K+ HF L HPYSA+ VA F ++V+LHG P +I
Sbjct: 998 ALDFVEALPRVRGKSVILTVVDRFSKYCHFIPLSHPYSAETVAQAFFADIVRLHGMPQSI 1057
Query: 1101 VSDRDPLFLSNFWKELFKMAGTQLKLSTSYHPQTDGQTEVTNRCLETYLRCFVGPKPKQW 1160
VSDRD +F S+FW+EL + GT+L ++T++HPQ+DGQ+E NR + YLRC G +P+QW
Sbjct: 1058 VSDRDTVFTSHFWRELMWLVGTKLHMTTAFHPQSDGQSESANRVIVMYLRCLTGDRPRQW 1117
Query: 1161 LDWLPWAEFWFNTNYNSSAGMSPFKALYGRDPPLLLKAGAIPSRVEEVNQLFQQRDGVLG 1220
L WLPWAE+ FNT Y +S +PF+ +YGRDPP + +RV V + ++RD L
Sbjct: 1118 LQWLPWAEYVFNTAYQTSLRDTPFRVVYGRDPPSIRSYEPGDTRVAAVAKTMEERDKFLA 1177
Query: 1221 ELKQNLLKAQHQMKVQADKHRRLVEFNEGDWVYLKLQPYKLKSIATRPCAKLAPRFYGPY 1280
+++ L +AQ K DK R V + GDW L+L+ S+ KL PRFYGPY
Sbjct: 1178 DIRSRLEQAQATQKRHYDKAHRHVTYQVGDWALLRLRQRAASSLPQTVAGKLRPRFYGPY 1237
Query: 1281 KILDRVGPVAYKLELPAHSKIHPVFHVSLLKQAL-KPTQQPQPLPPMLNEELELEVVPED 1339
+I + + VA +L LP +++H VFH+ LLK+ P P PLP + + + E PE
Sbjct: 1238 RITELINDVAVRLALPPRARLHDVFHIGLLKKFHGSPPDAPPPLPAVHHGAVVPE--PER 1295
Query: 1340 VIDHREDAQGNLEVLIKWEQLPTCDNTWELAAVIQDKFPLFPLEDKVKL 1388
+ R A+G ++LI+W+ TWE A K+P F L D++ L
Sbjct: 1296 AVKTRL-ARGVRQLLIQWKGESPASATWEDADAFIAKYPDFQLGDELAL 1343
Score = 390 bits (1002), Expect = e-106
Identities = 247/711 (34%), Positives = 367/711 (50%), Gaps = 62/711 (8%)
Query: 3 LEIPIFSGD-DAVGWTQKLERYFAMREVTEDERMQATMVALEGRALSWFQWWERCNPSPT 61
++ P + G D + + + E YF + + E+E++ LE A W+ + +P
Sbjct: 1 MDFPRYDGTTDPLIFVNRCESYFHQQRIMEEEKVWMASYNLEDVAQLWYIQLQEDEGTPR 60
Query: 62 WEAFKLAVVRRFQPSMIQNPFELLLSLKQVGTVDEYVEEFEKY---AGALKEIDHDFVRG 118
W FK + RF P + P L ++ GTV EY F+ AG L+E +
Sbjct: 61 WNRFKDLLHLRFGPPLRSAPLFELAECRRTGTVKEYQNSFQALLPRAGPLQEAQ---LVQ 117
Query: 119 IFLNGLKEEIKAEVRLIQKSLLIEQKNQIVTKKGVGFTRPSSAFRNNNYSKVVTVEPQNN 178
+F GL + VR+ L + + + +P+ ++ PQ
Sbjct: 118 LFTGGLLPPLSHAVRIHNPQSLAAAMSLARQVELMELDKPAPVPARPAPRGLLPALPQR- 176
Query: 179 TDQKQDSSSVGSVAMPSRNNAGIDSSRNRGGEFKHLTGAQMREKRDKNLCFRCDEPYSRE 238
+A+P+ A ++ K L+ + E+R LC+ CDE YSR
Sbjct: 177 ------------LALPAPP-ASAPVAKMEAKPVKRLSQEEQAERRRLGLCYNCDEKYSRG 223
Query: 239 HK--CRNK-QLRMIIMEDDDDADCGEFEDALSGEFNSLQLSLCSMAGLTSTKSWKMVGQI 295
H CR + + + D +DA +D + F SL ++AG+ + ++ +
Sbjct: 224 HNRVCRRIFYIDGVTLTDAEDAALDADQDGEAPVF-----SLQAVAGVPICDTMQVRVML 278
Query: 296 GNQSIVVLIDCGASHNFISHKLVEQLNLTVAETQTYTVEVGDGYKIRCKGKCSQLGIMIQ 355
G ++ L+D ++HNFI+ + + NL + T V +G KI+C G Q I I
Sbjct: 279 GAVTLTALLDTSSTHNFIAEEAARRTNLAIQPKPRLTATVANGEKIQCPGVLRQAPITID 338
Query: 356 ALEIVQNFYLFGLNGMDVVLGIEWLASLGDIKANFGKMELTLKR-GKEVY--TLKGDPSL 412
E + ++ L G D+VLG +W+ +LG I +F ++ R G EV + P
Sbjct: 339 GEEFHVDLFVMPLAGYDLVLGTQWMVTLGPITWDFTARTMSFSRHGMEVRWSDVAARPEP 398
Query: 413 TKSELSYGALMQILLEEGEGLLVHCDTGEKVNKKECEIPEIITGVLLQFDTVFQDPQGLP 472
T + + A ++LL+ G+L F+ VF +P GLP
Sbjct: 399 TVAVI---AASEVLLD---------------------------GLLASFEGVFAEPSGLP 428
Query: 473 PRRRHDHAIHLKEGAQVPNLRPYKCPHYQKNEVEKLVAEMLEAGVIRPSISPFSSPIILV 532
P+R DH+I LK GA +RPY+ K+E+E A ++E G++R S S FSSP++LV
Sbjct: 429 PQRARDHSIVLKPGALPVAVRPYRYLAAHKDELELQCAAIIEQGIVRRSDSAFSSPVLLV 488
Query: 533 KKKDGGWRLCVDYRALNKVTIPNKFPIPIIEELLDELGGAKVFSKLDLKSGYHQIRMKDA 592
KK DG WR CVDYRALN +T+ + FPIP+I+ELLDEL GA+ F+KLDL+SGYHQ+RM+ A
Sbjct: 489 KKPDGSWRFCVDYRALNALTVKDAFPIPVIDELLDELHGARFFTKLDLRSGYHQVRMRPA 548
Query: 593 DIEKTAFRTHEGHYEFLVMPFGLTNAPSTFQSLMNEVLKPYLRKFALVFFDDILVYSPDL 652
D+ KTAF TH+G YEFLVMPFGL NAP TFQ+LMN+VL+P+LR+F LVFFDDIL+YS
Sbjct: 549 DVHKTAFHTHDGLYEFLVMPFGLCNAPVTFQALMNDVLRPFLRRFVLVFFDDILIYSKTW 608
Query: 653 LTHTTHLQQVLTLLADHALKANRKKCSFGQTSLEYLGHIVSGEGGGC*PIK 703
H H++ VL+ L H L R KC+F S+ YLGH++S G P K
Sbjct: 609 ADHLRHIRAVLSELQRHQLFLKRAKCAFASASVAYLGHVISEAGVAMDPAK 659
>gb|AAP54595.1| putative gag-pol polyprotein [Oryza sativa (japonica cultivar-group)]
gi|37536012|ref|NP_922308.1| putative gag-pol polyprotein
[Oryza sativa (japonica cultivar-group)]
gi|10140673|gb|AAG13508.1| putative gag-pol polyprotein
[Oryza sativa (japonica cultivar-group)]
Length = 1608
Score = 454 bits (1167), Expect = e-125
Identities = 243/583 (41%), Positives = 350/583 (59%), Gaps = 14/583 (2%)
Query: 806 LAFWSQGLSPRAQHKSVYERELMALVQAIQKWRHYLMGRHFIVRTDQKSLKFLTDQRLFS 865
+A+ S+ L P+ + S YE+E MA++ A++ WR YL FI+ TD SL LT+QRL +
Sbjct: 957 IAYLSRALGPKTRGLSTYEKEYMAIILAVEHWRPYLQQGEFIILTDHHSLMHLTEQRLHT 1016
Query: 866 *DQFKWAVKLVGLDFEIQYKPGSENTVADALSRKMMYSALSILTSAEKEDWNSELQQ--- 922
Q K KL+GL ++I Y+ G N ADALSR+ + S W EL Q
Sbjct: 1017 PWQQKAFTKLLGLQYKICYRKGVSNAAADALSRRESPISEVAAISECIPSWMQELMQGYQ 1076
Query: 923 -DSKLVKVIQDLLISPTSHPGFEFKKGLLYYKNRLVLSKASNRIPMIISECHDTPTGGHS 981
D + +++ +L ISP S ++ +G+L YK ++ + + +++E H TP GGHS
Sbjct: 1077 LDGQSKQLLAELAISPNSRKDYQLCQGILKYKGKIWVGNNTALQHKLVNELHATPLGGHS 1136
Query: 982 GHFRTYKRIASFLYWEGMKTDIKNFVEDCEICQRSKYSTLAPGGLLQPLPIPTQVWMDIS 1041
G TY+++ S W GMK IK ++ C++C ++K GLLQPLP+P W IS
Sbjct: 1137 GFPVTYRKVKSLFAWPGMKKLIKEQLQSCQVCLQAKPDRARYPGLLQPLPVPAGAWQTIS 1196
Query: 1042 MDFVGGLPKVRGKDTVLVVVDRLTKFAHFYALGHPYSAKDVAVLFIKELVKLHGFPTTIV 1101
+DF+ GLP+ + +LVVVD+ +K++HF L HP++A VA F+K + KLHG P I+
Sbjct: 1197 LDFIEGLPRSSHYNCILVVVDKFSKYSHFIPLSHPFNAGGVAQEFMKNIYKLHGLPRAII 1256
Query: 1102 SDRDPLFLSNFWKELFKMAGTQLKLSTSYHPQTDGQTEVTNRCLETYLRCFVGPKPKQWL 1161
SDRD +F S FW +LF GT L +S++YHPQ+DGQTE N+CLE YLRCFV P +W
Sbjct: 1257 SDRDKIFTSQFWDQLFSKFGTDLHMSSAYHPQSDGQTERVNQCLEIYLRCFVHAAPHKWS 1316
Query: 1162 DWLPWAEFWFNTNYNSSAGMSPFKALYGRDPPLLLKAGAIPSRVEEVNQLFQQRDGVLGE 1221
WL AEFW+NT+++S+ +PF+ LYG P G ++ ++++ +R +
Sbjct: 1317 SWLYLAEFWYNTSFHSTLNKTPFEVLYGYTPS-HFGIGLDDCQIADLHEWHTERKFMQQL 1375
Query: 1222 LKQNLLKAQHQMKVQADKHRRLVEFNEGDWVYLKLQPYKLKSIATRPCAKLAPRFYGPYK 1281
L+Q+L +AQ QMK QADK R +F GDWVYLKLQPY +A R C KLA R+YGP++
Sbjct: 1376 LQQHLNRAQQQMKHQADKKRSFRQFAVGDWVYLKLQPYVQTFVAQRACHKLAFRYYGPFQ 1435
Query: 1282 ILDRVGPVAYKLELPAHSKIHPVFHVSLLKQALKPTQQPQPLPPMLNEELELEVVPEDVI 1341
++ RVG VAY ++LPA S IHPVFHVS LK A+ +++ Q P L+ VP +
Sbjct: 1436 VMSRVGTVAYHIQLPATSSIHPVFHVSQLKAAVGFSKKVQDELPTSLGALQ---VPFQFL 1492
Query: 1342 DHREDAQGN---LEVLIKWEQLPTCDNTWELAAVIQDKFPLFP 1381
D R +GN L++L W ++TWE ++D F FP
Sbjct: 1493 DKRLVKKGNRSVLQLLTHWYHSSPSESTWE---DMEDLFARFP 1532
Score = 407 bits (1047), Expect = e-111
Identities = 250/715 (34%), Positives = 375/715 (51%), Gaps = 23/715 (3%)
Query: 3 LEIPIFSGDDAVGWTQKLERYFAMREVTEDERMQATMVALEGRALSWFQWWERCNPSPTW 62
+ P F+GD+ W E YF + + ++ + G A W Q TW
Sbjct: 148 MSCPQFNGDNPQLWKSNCEVYFDIYGIHPQNWVKIATLNFCGNAAFWLQSVRSQLAGATW 207
Query: 63 EAFKLAVVRRFQPSMIQNPFELLLSLKQVGTVDEYVEEFEKYAGALKEI----DHDFVRG 118
V RF Q + + Q +V +YV+ F+ L D +
Sbjct: 208 FELCDRVCGRFARDRKQALIRQWIHITQTSSVADYVDRFDSIMHQLMAYGGSNDPAYFVT 267
Query: 119 IFLNGLKEEIKAEVRLIQKSLLIEQKNQI--VTKKGVGFTRPSSAFRNNNYSKVVTVEPQ 176
F++GLK+ I+ V ++Q+ ++ + + ++ + + S +N + + T
Sbjct: 268 KFVDGLKDHIRVVV-MVQRPQDLDSACTVALLQEEALEGVQSVSNKKNETTTFLKTKPSH 326
Query: 177 NNTDQKQDSSSVGSVAMPSRNNAGIDSSRNRGGEFKHLTGAQMREKRDKNLCFRCDEPYS 236
N T + S+ + + G++ S+ R + L +R K LCF C E +
Sbjct: 327 NLTSPTFQARSIPFTNIEDKR--GVEFSKGRDDKVSALRSY----RRSKGLCFVCGEKWG 380
Query: 237 REHKCRNK-QLRMI-----IMEDDDDADCGEFEDALSGEFNSLQLSLCSMAGLTSTKSWK 290
R+HKC QL ++ ++ D + +C S E + + +S ++ G S+KS +
Sbjct: 381 RDHKCATTVQLHVVEELINALKTDPEENCNSEGAPESEEDSLMAISFQALNGTDSSKSIR 440
Query: 291 MVGQIGNQSIVVLIDCGASHNFISHKLVEQLNLTVAETQTYTVEVGDGYKIRCKGKCSQL 350
+ G + N +++L+D G++H+FI KL QL Q V+V DG ++ C
Sbjct: 441 LRGWVQNTELLMLVDSGSTHSFIDAKLGAQLCGLQKLNQAIKVQVADGSQLFCDSFLPNC 500
Query: 351 GIMIQALEIVQNFYLFGLNGMDVVLGIEWLASLGDIKANFGKMELTLKRGKEVYTLKG-D 409
Q +F L L D +LG++WL ++ ++ + + + L+G
Sbjct: 501 SWWSQGHSFTSDFRLLPLGSYDAILGMDWLEQFSPMQVDWVHKWIAFQHHGQAVQLQGIH 560
Query: 410 PSLTKSELSYGALMQILLEEGEGL-LVHCDTGEKVNKKECEIPEIITGVLLQFDTVFQDP 468
P L+ +Q + ++G + LVH + E + +PEI+ +L +F +F +P
Sbjct: 561 PQLSTCFPISNDQLQGMSKKGAVMCLVHLNVAETLTATT--VPEIVQPILNEFQEIFSEP 618
Query: 469 QGLPPRRRHDHAIHLKEGAQVPNLRPYKCPHYQKNEVEKLVAEMLEAGVIRPSISPFSSP 528
LPP+R DH I L EGA+ NLRPY+ K+E+E+ VAEML +GVI+PS SPFSSP
Sbjct: 619 TELPPKRNCDHHIPLVEGAKPVNLRPYRYKPALKDEIERQVAEMLRSGVIQPSSSPFSSP 678
Query: 529 IILVKKKDGGWRLCVDYRALNKVTIPNKFPIPIIEELLDELGGAKVFSKLDLKSGYHQIR 588
+LVKKKDG WRLC+DYR LN VT+ +K+P+P+I+ELLDEL G+K FSKLDL++GYHQIR
Sbjct: 679 ALLVKKKDGTWRLCIDYRQLNDVTVKSKYPVPVIDELLDELAGSKWFSKLDLRAGYHQIR 738
Query: 589 MKDADIEKTAFRTHEGHYEFLVMPFGLTNAPSTFQSLMNEVLKPYLRKFALVFFDDILVY 648
M + D KTAF+TH GHYE+ VM FGLT AP+TF S MNE L P LRKFALVFFDDIL+Y
Sbjct: 739 MAEGDEYKTAFQTHSGHYEYKVMSFGLTGAPATFLSAMNETLSPVLRKFALVFFDDILIY 798
Query: 649 SPDLLTHTTHLQQVLTLLADHALKANRKKCSFGQTSLEYLGHIVSGEGGGC*PIK 703
SP L H H++ VL LL+ H K KCSF Q + YLGH++ G P K
Sbjct: 799 SPTLELHLQHVRTVLQLLSAHQWKVKLSKCSFAQQEISYLGHVIGAAGVATDPAK 853
Database: nr
Posted date: Jul 5, 2005 12:34 AM
Number of letters in database: 863,360,394
Number of sequences in database: 2,540,612
Lambda K H
0.324 0.140 0.432
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,491,257,468
Number of Sequences: 2540612
Number of extensions: 109718832
Number of successful extensions: 346717
Number of sequences better than 10.0: 36382
Number of HSP's better than 10.0 without gapping: 2783
Number of HSP's successfully gapped in prelim test: 33605
Number of HSP's that attempted gapping in prelim test: 267999
Number of HSP's gapped (non-prelim): 42921
length of query: 1430
length of database: 863,360,394
effective HSP length: 141
effective length of query: 1289
effective length of database: 505,134,102
effective search space: 651117857478
effective search space used: 651117857478
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 82 (36.2 bits)
Lotus: description of TM0281a.3