Lotus
BLAST2 result
BLASTP 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= TM0280a.7
         (121 letters)

Database: nr 
           2,540,612 sequences; 863,360,394 total letters

Searching..................................................done


                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

dbj|BAB11124.1| unnamed protein product [Arabidopsis thaliana] g...    73  2e-12
gb|AAO17392.1| SET domain histone methyltransferase SUVH4 [Arabi...    73  2e-12
gb|AAK28969.1| SUVH4 [Arabidopsis thaliana]                            73  2e-12
gb|AAM89287.1| SET domain-containing protein SET118 [Zea mays]         63  2e-09
ref|XP_463687.1| putative SUVH4 [Oryza sativa (japonica cultivar...    62  3e-09
dbj|BAD88195.1| putative SET domain-containing protein [Oryza sa...    62  3e-09
emb|CAE04343.2| OSJNBb0038F03.7 [Oryza sativa (japonica cultivar...    42  0.004
gb|AAM89288.1| SET domain-containing protein SET104 [Zea mays]         40  0.010
gb|AAL01113.2| Su(VAR)3-9-related protein 4 [Arabidopsis thaliana]     40  0.017
emb|CAH65313.1| hypothetical protein [Gallus gallus] gi|60302716...    39  0.022
emb|CAH65223.1| hypothetical protein [Gallus gallus]                   39  0.022
emb|CAG31408.1| hypothetical protein [Gallus gallus]                   39  0.022
gb|AAH11635.1| SETMAR protein [Homo sapiens]                           39  0.038
ref|XP_533755.1| PREDICTED: similar to SETMAR protein [Canis fam...    39  0.038
ref|XP_526121.1| PREDICTED: similar to SETMAR protein [Pan trogl...    39  0.038
ref|XP_588608.1| PREDICTED: similar to SETMAR protein, partial [...    39  0.038
dbj|BAD96454.1| SET domain and mariner transposase fusion gene v...    39  0.038
gb|AAC52012.1| orf; encodes putative chimeric protein with SET d...    39  0.038
gb|AAC09350.1| unknown [Homo sapiens]                                  39  0.038
gb|AAF63769.1| hypothetical protein [Arabidopsis thaliana]             38  0.050

>dbj|BAB11124.1| unnamed protein product [Arabidopsis thaliana]
           gi|26983788|gb|AAN86146.1| unknown protein [Arabidopsis
           thaliana] gi|15240758|ref|NP_196900.1| SET
           domain-containing protein (SUVH4) [Arabidopsis thaliana]
           gi|30580520|sp|Q8GZB6|SUV4_ARATH Histone-lysine
           N-methyltransferase, H3 lysine-9 specific 4 (Histone
           H3-K9 methyltransferase 4) (H3-K9-HMTase 4) (Suppressor
           of variegation 3-9 homolog 4) (Su(var)3-9 homolog 4)
           (KRYPTONITE protein)
          Length = 624

 Score = 72.8 bits (177), Expect = 2e-12
 Identities = 38/99 (38%), Positives = 61/99 (61%)

Query: 23  NRISQKDLQYCLQVYLKISKGWAVNTRDFILFGTPVLEYVKELRKNVELVIDSVSECGFE 82
           NR SQK L++ L+V+    KGWAV + ++I  G+PV EY+  +R+  ++   S +E  FE
Sbjct: 437 NRTSQKRLRFNLEVFRSAKKGWAVRSWEYIPAGSPVCEYIGVVRRTADVDTISDNEYIFE 496

Query: 83  IDCLKIINEVEGRNRLLHNVSLPASFCVERSVDDEETME 121
           IDC + +  + GR R L +V++P +  V +S +DE   E
Sbjct: 497 IDCQQTMQGLGGRQRRLRDVAVPMNNGVSQSSEDENAPE 535


>gb|AAO17392.1| SET domain histone methyltransferase SUVH4 [Arabidopsis thaliana]
          Length = 624

 Score = 72.8 bits (177), Expect = 2e-12
 Identities = 38/99 (38%), Positives = 61/99 (61%)

Query: 23  NRISQKDLQYCLQVYLKISKGWAVNTRDFILFGTPVLEYVKELRKNVELVIDSVSECGFE 82
           NR SQK L++ L+V+    KGWAV + ++I  G+PV EY+  +R+  ++   S +E  FE
Sbjct: 437 NRTSQKRLRFNLEVFRSAKKGWAVRSWEYIPAGSPVCEYIGVVRRTADVDTISDNEYIFE 496

Query: 83  IDCLKIINEVEGRNRLLHNVSLPASFCVERSVDDEETME 121
           IDC + +  + GR R L +V++P +  V +S +DE   E
Sbjct: 497 IDCQQTMQGLGGRQRRLRDVAVPMNNGVSQSSEDENAPE 535


>gb|AAK28969.1| SUVH4 [Arabidopsis thaliana]
          Length = 624

 Score = 72.8 bits (177), Expect = 2e-12
 Identities = 38/99 (38%), Positives = 61/99 (61%)

Query: 23  NRISQKDLQYCLQVYLKISKGWAVNTRDFILFGTPVLEYVKELRKNVELVIDSVSECGFE 82
           NR SQK L++ L+V+    KGWAV + ++I  G+PV EY+  +R+  ++   S +E  FE
Sbjct: 437 NRTSQKRLRFNLEVFRSAKKGWAVRSWEYIPAGSPVCEYIGVVRRTADVDTISDNEYIFE 496

Query: 83  IDCLKIINEVEGRNRLLHNVSLPASFCVERSVDDEETME 121
           IDC + +  + GR R L +V++P +  V +S +DE   E
Sbjct: 497 IDCQQTMQGLGGRQRRLRDVAVPMNNGVSQSSEDENAPE 535


>gb|AAM89287.1| SET domain-containing protein SET118 [Zea mays]
          Length = 696

 Score = 62.8 bits (151), Expect = 2e-09
 Identities = 33/75 (44%), Positives = 46/75 (61%), Gaps = 1/75 (1%)

Query: 23  NRISQKDLQYCLQVYLKISKGWAVNTRDFILFGTPVLEYVKELRKNVELVIDSVSECGFE 82
           NR SQ+ LQY L+V+   SKGW V T D IL G P+ EY   LR+  +L     + C F+
Sbjct: 510 NRTSQQGLQYHLEVFKTASKGWGVRTWDTILPGAPICEYTGVLRRTEDLDGSQNNYC-FD 568

Query: 83  IDCLKIINEVEGRNR 97
           IDCL+ +  ++GR +
Sbjct: 569 IDCLQTMKGLDGREK 583


>ref|XP_463687.1| putative SUVH4 [Oryza sativa (japonica cultivar-group)]
           gi|20160732|dbj|BAB89674.1| putative SUVH4 [Oryza sativa
           (japonica cultivar-group)]
          Length = 676

 Score = 62.0 bits (149), Expect = 3e-09
 Identities = 33/75 (44%), Positives = 45/75 (60%)

Query: 23  NRISQKDLQYCLQVYLKISKGWAVNTRDFILFGTPVLEYVKELRKNVELVIDSVSECGFE 82
           NR SQK LQY L+V+   SKGW V T D IL G P+ EY   LR+  E+     +   F+
Sbjct: 490 NRTSQKGLQYRLEVFKTASKGWGVRTWDTILPGAPICEYTGVLRRTEEVDGLLQNNYIFD 549

Query: 83  IDCLKIINEVEGRNR 97
           IDCL+ +  ++GR +
Sbjct: 550 IDCLQTMKGLDGREK 564


>dbj|BAD88195.1| putative SET domain-containing protein [Oryza sativa (japonica
           cultivar-group)]
          Length = 663

 Score = 62.0 bits (149), Expect = 3e-09
 Identities = 33/75 (44%), Positives = 45/75 (60%)

Query: 23  NRISQKDLQYCLQVYLKISKGWAVNTRDFILFGTPVLEYVKELRKNVELVIDSVSECGFE 82
           NR SQK LQY L+V+   SKGW V T D IL G P+ EY   LR+  E+     +   F+
Sbjct: 477 NRTSQKGLQYRLEVFKTASKGWGVRTWDTILPGAPICEYTGVLRRTEEVDGLLQNNYIFD 536

Query: 83  IDCLKIINEVEGRNR 97
           IDCL+ +  ++GR +
Sbjct: 537 IDCLQTMKGLDGREK 551


>emb|CAE04343.2| OSJNBb0038F03.7 [Oryza sativa (japonica cultivar-group)]
           gi|50927315|ref|XP_473383.1| OSJNBb0038F03.7 [Oryza
           sativa (japonica cultivar-group)]
          Length = 841

 Score = 41.6 bits (96), Expect = 0.004
 Identities = 24/61 (39%), Positives = 33/61 (53%)

Query: 23  NRISQKDLQYCLQVYLKISKGWAVNTRDFILFGTPVLEYVKELRKNVELVIDSVSECGFE 82
           NR+ Q  L++ LQV+     GW V T DFI  G+ V EY+ E+ ++ E    S  E  F 
Sbjct: 661 NRVGQHGLRFRLQVFKTKLMGWGVRTLDFIPSGSFVCEYIGEVLEDEEAQKRSTDEYLFA 720

Query: 83  I 83
           I
Sbjct: 721 I 721


>gb|AAM89288.1| SET domain-containing protein SET104 [Zea mays]
          Length = 886

 Score = 40.4 bits (93), Expect = 0.010
 Identities = 19/48 (39%), Positives = 30/48 (61%)

Query: 23  NRISQKDLQYCLQVYLKISKGWAVNTRDFILFGTPVLEYVKELRKNVE 70
           NR+ Q  L++ LQ++   S GW V T +FI  G+ V EY+ E+ ++ E
Sbjct: 704 NRVGQHGLKFRLQIFKTKSMGWGVRTLEFIPSGSFVCEYIGEVLEDEE 751


>gb|AAL01113.2| Su(VAR)3-9-related protein 4 [Arabidopsis thaliana]
          Length = 488

 Score = 39.7 bits (91), Expect = 0.017
 Identities = 28/99 (28%), Positives = 46/99 (46%), Gaps = 16/99 (16%)

Query: 23  NRISQKDLQYCLQVYL-KISKGWAVNTRDFILFGTPVLEYVKELRKNVELVIDSVSECGF 81
           NR+ Q+ +++ LQVY  +  KGW + T   +  GT + EY+ E+  N EL   +V     
Sbjct: 293 NRVVQRGIRWQLQVYFTQEGKGWGLRTLQDLPKGTFICEYIGEILTNTELYDRNVR---- 348

Query: 82  EIDCLKIINEVEGRNRLLHNVSLPASFCVERSVDDEETM 120
                          R  + V+L A +  E+ + DEE +
Sbjct: 349 -----------SSSERHTYPVTLDADWGSEKDLKDEEAL 376


>emb|CAH65313.1| hypothetical protein [Gallus gallus] gi|60302716|ref|NP_001012550.1|
            euchromatic histone methyltransferase 1 [Gallus gallus]
          Length = 1249

 Score = 39.3 bits (90), Expect = 0.022
 Identities = 24/67 (35%), Positives = 31/67 (45%)

Query: 18   WT*FDNRISQKDLQYCLQVYLKISKGWAVNTRDFILFGTPVLEYVKELRKNVELVIDSVS 77
            W    NR+ Q  L+  LQ+Y     GW V T   I  GT V EYV EL  + E  +    
Sbjct: 1062 WRTCRNRVVQNGLRTRLQLYRTQKMGWGVRTMQDIPLGTFVCEYVGELISDSEADVREED 1121

Query: 78   ECGFEID 84
               F++D
Sbjct: 1122 SYLFDLD 1128


>emb|CAH65223.1| hypothetical protein [Gallus gallus]
          Length = 904

 Score = 39.3 bits (90), Expect = 0.022
 Identities = 24/67 (35%), Positives = 31/67 (45%)

Query: 18  WT*FDNRISQKDLQYCLQVYLKISKGWAVNTRDFILFGTPVLEYVKELRKNVELVIDSVS 77
           W    NR+ Q  L+  LQ+Y     GW V T   I  GT V EYV EL  + E  +    
Sbjct: 717 WRTCRNRVVQNGLRTRLQLYRTQKMGWGVRTMQDIPLGTFVCEYVGELISDSEADVREED 776

Query: 78  ECGFEID 84
              F++D
Sbjct: 777 SYLFDLD 783


>emb|CAG31408.1| hypothetical protein [Gallus gallus]
          Length = 856

 Score = 39.3 bits (90), Expect = 0.022
 Identities = 24/67 (35%), Positives = 31/67 (45%)

Query: 18  WT*FDNRISQKDLQYCLQVYLKISKGWAVNTRDFILFGTPVLEYVKELRKNVELVIDSVS 77
           W    NR+ Q  L+  LQ+Y     GW V T   I  GT V EYV EL  + E  +    
Sbjct: 669 WRTCRNRVVQNGLRTRLQLYRTQKMGWGVRTMQDIPLGTFVCEYVGELISDSEADVREED 728

Query: 78  ECGFEID 84
              F++D
Sbjct: 729 SYLFDLD 735


>gb|AAH11635.1| SETMAR protein [Homo sapiens]
          Length = 352

 Score = 38.5 bits (88), Expect = 0.038
 Identities = 19/43 (44%), Positives = 25/43 (57%)

Query: 23  NRISQKDLQYCLQVYLKISKGWAVNTRDFILFGTPVLEYVKEL 65
           NR+ QK LQ+  QV+    KGW + T +FI  G  V EY  E+
Sbjct: 117 NRVVQKGLQFHFQVFKTHKKGWGLRTLEFIPKGRFVCEYAGEV 159


>ref|XP_533755.1| PREDICTED: similar to SETMAR protein [Canis familiaris]
          Length = 342

 Score = 38.5 bits (88), Expect = 0.038
 Identities = 19/43 (44%), Positives = 26/43 (60%)

Query: 23  NRISQKDLQYCLQVYLKISKGWAVNTRDFILFGTPVLEYVKEL 65
           NR+ Q+ LQ+ LQV+    KGW + T +FI  G  V EY  E+
Sbjct: 158 NRVVQQGLQFQLQVFKTDKKGWGLRTLEFIPKGRFVCEYAGEV 200


>ref|XP_526121.1| PREDICTED: similar to SETMAR protein [Pan troglodytes]
          Length = 365

 Score = 38.5 bits (88), Expect = 0.038
 Identities = 19/43 (44%), Positives = 25/43 (57%)

Query: 23  NRISQKDLQYCLQVYLKISKGWAVNTRDFILFGTPVLEYVKEL 65
           NR+ QK LQ+  QV+    KGW + T +FI  G  V EY  E+
Sbjct: 130 NRVVQKGLQFHFQVFKTHKKGWGLRTLEFIPKGRFVCEYAGEV 172


>ref|XP_588608.1| PREDICTED: similar to SETMAR protein, partial [Bos taurus]
          Length = 300

 Score = 38.5 bits (88), Expect = 0.038
 Identities = 22/55 (40%), Positives = 31/55 (56%), Gaps = 6/55 (10%)

Query: 23  NRISQKDLQYCLQVYLKISKGWAVNTRDFILFGTPVLEY------VKELRKNVEL 71
           NR+ Q  LQ+ LQV+    KGW + T DFI  G  V EY      + E+++ V+L
Sbjct: 117 NRVVQWGLQFHLQVFKTDHKGWGLRTLDFIPKGRFVCEYAGEVLGISEVQRRVQL 171


>dbj|BAD96454.1| SET domain and mariner transposase fusion gene variant [Homo
           sapiens] gi|63079013|gb|AAY29570.1| metnase [Homo
           sapiens]
          Length = 671

 Score = 38.5 bits (88), Expect = 0.038
 Identities = 19/43 (44%), Positives = 25/43 (57%)

Query: 23  NRISQKDLQYCLQVYLKISKGWAVNTRDFILFGTPVLEYVKEL 65
           NR+ QK LQ+  QV+    KGW + T +FI  G  V EY  E+
Sbjct: 117 NRVVQKGLQFHFQVFKTHKKGWGLRTLEFIPKGRFVCEYAGEV 159


>gb|AAC52012.1| orf; encodes putative chimeric protein with SET domain in
           N-terminus with similarity to several other  human,
           Drosophila, nematode and yeast proteins [Homo sapiens]
           gi|5730039|ref|NP_006506.1| SET domain and mariner
           transposase fusion gene [Homo sapiens]
          Length = 671

 Score = 38.5 bits (88), Expect = 0.038
 Identities = 19/43 (44%), Positives = 25/43 (57%)

Query: 23  NRISQKDLQYCLQVYLKISKGWAVNTRDFILFGTPVLEYVKEL 65
           NR+ QK LQ+  QV+    KGW + T +FI  G  V EY  E+
Sbjct: 117 NRVVQKGLQFHFQVFKTHKKGWGLRTLEFIPKGRFVCEYAGEV 159


>gb|AAC09350.1| unknown [Homo sapiens]
          Length = 671

 Score = 38.5 bits (88), Expect = 0.038
 Identities = 19/43 (44%), Positives = 25/43 (57%)

Query: 23  NRISQKDLQYCLQVYLKISKGWAVNTRDFILFGTPVLEYVKEL 65
           NR+ QK LQ+  QV+    KGW + T +FI  G  V EY  E+
Sbjct: 117 NRVVQKGLQFHFQVFKTHKKGWGLRTLEFIPKGRFVCEYAGEV 159


>gb|AAF63769.1| hypothetical protein [Arabidopsis thaliana]
          Length = 424

 Score = 38.1 bits (87), Expect = 0.050
 Identities = 28/99 (28%), Positives = 45/99 (45%), Gaps = 16/99 (16%)

Query: 23  NRISQKDLQYCLQVYL-KISKGWAVNTRDFILFGTPVLEYVKELRKNVELVIDSVSECGF 81
           NR+ Q+ ++  LQVY  +  KGW + T   +  GT + EY+ E+  N EL   +V     
Sbjct: 277 NRVVQRGIRCQLQVYFTQEGKGWGLRTLQDLPKGTFICEYIGEILTNTELYDRNVR---- 332

Query: 82  EIDCLKIINEVEGRNRLLHNVSLPASFCVERSVDDEETM 120
                          R  + V+L A +  E+ + DEE +
Sbjct: 333 -----------SSSERHTYPVTLDADWGSEKDLKDEEAL 360


  Database: nr
    Posted date:  Jul 5, 2005 12:34 AM
  Number of letters in database: 863,360,394
  Number of sequences in database:  2,540,612
  
Lambda     K      H
   0.337    0.148    0.478 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 185,407,748
Number of Sequences: 2540612
Number of extensions: 6539031
Number of successful extensions: 23636
Number of sequences better than 10.0: 100
Number of HSP's better than 10.0 without gapping: 84
Number of HSP's successfully gapped in prelim test: 16
Number of HSP's that attempted gapping in prelim test: 23545
Number of HSP's gapped (non-prelim): 101
length of query: 121
length of database: 863,360,394
effective HSP length: 97
effective length of query: 24
effective length of database: 616,921,030
effective search space: 14806104720
effective search space used: 14806104720
T: 11
A: 40
X1: 15 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 39 (21.7 bits)
S2: 68 (30.8 bits)


Lotus: description of TM0280a.7