BLASTP 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= TM0278.5.1
         (30 letters)

Database: nr 
           2,540,612 sequences; 863,360,394 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

gb|AAP40506.1| putative small nuclear ribonucleoprotein Prp4p [A...    36  0.26
gb|AAM14969.1| putative small nuclear ribonucleoprotein Prp4p [A...    36  0.26

>gb|AAP40506.1| putative small nuclear ribonucleoprotein Prp4p [Arabidopsis
           thaliana]
          Length = 554

 Score = 36.2 bits (82), Expect = 0.26
 Identities = 17/30 (56%), Positives = 22/30 (72%), Gaps = 3/30 (10%)

Query: 4   IVTVSHDRTIKLWSSNMTNDNE---HTMDV 30
           I TVSHDRTIKLW+S+  +D +    TMD+
Sbjct: 523 IATVSHDRTIKLWTSSGNDDEDEEKETMDI 552


>gb|AAM14969.1| putative small nuclear ribonucleoprotein Prp4p [Arabidopsis
           thaliana] gi|2618685|gb|AAB84332.1| putative small
           nuclear ribonucleoprotein Prp4p [Arabidopsis thaliana]
           gi|58652074|gb|AAW80862.1| At2g41500 [Arabidopsis
           thaliana] gi|7488209|pir||T02445 probable U4/U6 small
           nuclear ribonucleoprotein [imported] - Arabidopsis
           thaliana gi|15227373|ref|NP_181681.1| WD-40 repeat
           family protein / small nuclear ribonucleoprotein
           Prp4p-related [Arabidopsis thaliana]
           gi|3123130|sp|O22212|PRP4_ARATH Hypothetical Trp-Asp
           repeats containing protein At2g41500
          Length = 554

 Score = 36.2 bits (82), Expect = 0.26
 Identities = 17/30 (56%), Positives = 22/30 (72%), Gaps = 3/30 (10%)

Query: 4   IVTVSHDRTIKLWSSNMTNDNE---HTMDV 30
           I TVSHDRTIKLW+S+  +D +    TMD+
Sbjct: 523 IATVSHDRTIKLWTSSGNDDEDEEKETMDI 552


  Database: nr
    Posted date:  Jul 5, 2005 12:34 AM
  Number of letters in database: 863,360,394
  Number of sequences in database:  2,540,612
  
Lambda     K      H
   0.313    0.128    0.388 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 53,923,166
Number of Sequences: 2540612
Number of extensions: 804156
Number of successful extensions: 6479
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 6471
Number of HSP's gapped (non-prelim): 8
length of query: 30
length of database: 863,360,394
effective HSP length: 6
effective length of query: 24
effective length of database: 848,116,722
effective search space: 20354801328
effective search space used: 20354801328
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 69 (31.2 bits)