BLAST2 result
BLASTP 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TM0269b.9
(1085 letters)
Database: nr
2,540,612 sequences; 863,360,394 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
dbj|BAB33196.1| RNA polymerase beta' subunit-2 [Lotus corniculat... 1827 0.0
gb|AAL07336.1| rpoC2 [Glycine max] gi|41018056|sp|Q8HVY3|RPOC2_S... 1382 0.0
emb|CAA27545.1| unnamed protein product [Pisum sativum] gi|81957... 1382 0.0
emb|CAJ00748.1| RNA polymerase beta'' chain [Cucumis sativus] 1283 0.0
emb|CAA77410.1| RNA polymerase beta'' subunit [Nicotiana tabacum... 1271 0.0
sp|P38550|RPOC2_TOBAC DNA-directed RNA polymerase beta'' chain (... 1271 0.0
ref|YP_086956.1| RNA polymerase beta II subunit [Panax ginseng] ... 1266 0.0
emb|CAC88034.1| RNA polymerase beta II subunit [Atropa belladonn... 1255 0.0
emb|CAB88715.1| RNA polymerase beta'' subunit [Spinacia oleracea... 1236 0.0
emb|CAD28711.1| RNA polymerase beta' subunit-2 [Calycanthus flor... 1233 0.0
dbj|BAD93459.1| RNA polymerase beta chain [Silene latifolia] 1209 0.0
dbj|BAA84375.1| RNA polymerase beta' subunit-2 [Arabidopsis thal... 1187 0.0
emb|CAB67153.1| RNA polymerase beta'' subunit [Oenothera elata s... 1176 0.0
gb|AAX58144.1| RNA polymerase beta II subunit [Lactuca sativa] 1170 0.0
emb|CAB48415.2| RNA polymerase A beta prime prime subunit [Sinap... 1151 0.0
emb|CAD45097.2| RNA polymerase beta' subunit-2 [Amborella tricho... 1145 0.0
emb|CAF28583.1| RNA polymerase beta' subunit-2 [Nymphaea alba] g... 1100 0.0
pir||A05028 rpoC protein homolog - common tobacco chloroplast 852 0.0
emb|CAA28063.1| rpoC2 [Marchantia polymorpha] gi|66985|pir||RNLV... 681 0.0
dbj|BAC85071.1| RNA polymerase beta'' subunit [Physcomitrella pa... 639 0.0
>dbj|BAB33196.1| RNA polymerase beta' subunit-2 [Lotus corniculatus var. japonicus]
gi|13518438|ref|NP_084798.1| RNA polymerase beta'' chain
[Lotus corniculatus var. japonicus]
gi|23822109|sp|Q9BBS7|RPOC2_LOTJA DNA-directed RNA
polymerase beta'' chain (PEP) (Plastid-encoded RNA
polymerase beta'' subunit) (RNA polymerase beta''
subunit)
Length = 1332
Score = 1827 bits (4732), Expect = 0.0
Identities = 905/925 (97%), Positives = 909/925 (97%)
Query: 159 IYIGSRCIVVRNQDIGIGLINRFINFQTQPIFIRTPFTCRNTSWICRLCYGRSPIHGDLV 218
IYIGSRCIVVRNQDIGIGLINRFINFQTQPIFIRTPFTCRNTSWICRLCYGRSPIHG+LV
Sbjct: 253 IYIGSRCIVVRNQDIGIGLINRFINFQTQPIFIRTPFTCRNTSWICRLCYGRSPIHGNLV 312
Query: 219 ELGEAVGIIAGQSIGEPGTQLTLITFHTGGVFTGGTAEYVRSPSNGKIKFNENSAYPTRT 278
ELGEAVGIIAGQSIGEPGTQLTL TFHTGGVFTGGTAEYVRSPSNGKIKFNENSAYPTRT
Sbjct: 313 ELGEAVGIIAGQSIGEPGTQLTLRTFHTGGVFTGGTAEYVRSPSNGKIKFNENSAYPTRT 372
Query: 279 RHGHPAFLCYIDLYVTIESNDIMHNVIIPPKSFLLVQNDQYVKSEQIIAEIRAGTYTLNL 338
RHGHPAFLCYIDLYVTIESNDIMHNVIIPPKSFLLVQNDQYVKSEQIIAEIRAGTYTLNL
Sbjct: 373 RHGHPAFLCYIDLYVTIESNDIMHNVIIPPKSFLLVQNDQYVKSEQIIAEIRAGTYTLNL 432
Query: 339 KEKIRKHIFSDSEGEMHWSTNIYHVSEFAYSNVHILPKTSHLWILSGNSHKSDTVSLSLL 398
KEK+RKHIFSDSEGEMHWSTNIYHVSEFAYSNVHILPKTSHLWILSGNSHKSDTVSLSLL
Sbjct: 433 KEKVRKHIFSDSEGEMHWSTNIYHVSEFAYSNVHILPKTSHLWILSGNSHKSDTVSLSLL 492
Query: 399 KDQDQMSTHSLPTAKRNTSNFLVSNNQVRLCPDHCHFMHPTISPDTSNLLAKKRRNRFII 458
KDQDQMSTHSLPTAKRNTSNFLVSNNQVRLCPDHCHFMHPTISPDTSNLLAKKRRNRFII
Sbjct: 493 KDQDQMSTHSLPTAKRNTSNFLVSNNQVRLCPDHCHFMHPTISPDTSNLLAKKRRNRFII 552
Query: 459 PFLFRSIRERNNELMPDISVEIPIDGIIHKNSILAYFDDPQYRTQSSGIAKYKTIGIHSI 518
PFLFRSIRERNNELMPDISVEIPIDGIIHKNSILAYFDDPQYRTQSSGIAKYKTIGIHSI
Sbjct: 553 PFLFRSIRERNNELMPDISVEIPIDGIIHKNSILAYFDDPQYRTQSSGIAKYKTIGIHSI 612
Query: 519 FQKEDLIEYRGIREFKPKYQIKVDRFFFIPQEVHILSESSSIMVRNNSIIGVNTPITLNK 578
FQKEDLIEYRGIREFKPKYQIKVDRFFFIPQEVHILSESSSIMVRNNSIIGVNTPITLNK
Sbjct: 613 FQKEDLIEYRGIREFKPKYQIKVDRFFFIPQEVHILSESSSIMVRNNSIIGVNTPITLNK 672
Query: 579 KSRVGGLVRVEKNKKKIELKIFSGDIHFPGEIDKISQHSAILIPPEMVKKKILRNQKKKT 638
KSRVGGLVRVEKNKKKIELKIFSGDIHFPGEIDKISQHSAILIPPEMVKKK + KKKT
Sbjct: 673 KSRVGGLVRVEKNKKKIELKIFSGDIHFPGEIDKISQHSAILIPPEMVKKKNSKESKKKT 732
Query: 639 NWRYIQWITTTKKKYFVLVRPVILYDIADSINLVKLFPQDLFKEWDNLELKVLNFILYGN 698
NWRYIQWITTTKKKYFVLVRPVILYDIADSINLVKLFPQDLFKEWDNLELKVLNFILYGN
Sbjct: 733 NWRYIQWITTTKKKYFVLVRPVILYDIADSINLVKLFPQDLFKEWDNLELKVLNFILYGN 792
Query: 699 GKSIRGILDTSIQLVRTCLVLNWNEDEKSSSIEEALASFVEVSTNGLIRYFLRIDLVKSH 758
GKSIRGILDTSIQLVRTCLVLNWNEDEKSSSIEEALASFVEVSTNGLIRYFLRIDLVKSH
Sbjct: 793 GKSIRGILDTSIQLVRTCLVLNWNEDEKSSSIEEALASFVEVSTNGLIRYFLRIDLVKSH 852
Query: 759 ISYIRKRNDPSSSGLISYNESDRININPFFSIYKENIQQSLSQKHGTIRMLLNRNKENRS 818
ISYIRKRNDPSSSGLISYNESDRININPFFSIYKENIQQSLSQKHGTIRMLLNRNKENRS
Sbjct: 853 ISYIRKRNDPSSSGLISYNESDRININPFFSIYKENIQQSLSQKHGTIRMLLNRNKENRS 912
Query: 819 FIILSSSNCFQMGPFNNVKYHNGIKEEINQFKRNHKIPIKISLGPLGVAPQIANFFSFYH 878
FIILSSSNCFQMGPFNNVKYHNGIKEEINQFKRNHKIPIKISLGPLGVAPQIANFFSFYH
Sbjct: 913 FIILSSSNCFQMGPFNNVKYHNGIKEEINQFKRNHKIPIKISLGPLGVAPQIANFFSFYH 972
Query: 879 LITHNKISSIKKNLQLNKFKETFQVIKYYLMDENERIYKPDLYNNIILNPFHLNWDFIHP 938
LITHNKISSIKKNLQLNKFKETFQVIKYYLMDENERIYKPDLYNNIILNPFHLNWDFIHP
Sbjct: 973 LITHNKISSIKKNLQLNKFKETFQVIKYYLMDENERIYKPDLYNNIILNPFHLNWDFIHP 1032
Query: 939 NYCEKTFPIISLGQFICENVCIVQTKNGPNLKSGQVITVQMDFVGIRLANPYLATPGATI 998
NYCEKTFPIISLGQFICENVCIVQTKNGPNLKSGQVITVQMDFVGIRLANPYLATPGATI
Sbjct: 1033 NYCEKTFPIISLGQFICENVCIVQTKNGPNLKSGQVITVQMDFVGIRLANPYLATPGATI 1092
Query: 999 HGHYGEMLYEGDILVTFIYEKSRSGDITQGLPKVEQVLEVRSIDSISMNLEKRIDAWNER 1058
HGHYGEMLYEGDILVTFIYEKSRSGDITQGLPKVEQVLEVRSIDSISMNLEKRIDAWNER
Sbjct: 1093 HGHYGEMLYEGDILVTFIYEKSRSGDITQGLPKVEQVLEVRSIDSISMNLEKRIDAWNER 1152
Query: 1059 ITGILGIPWSRKISMSRKLLQDNIS 1083
ITGILGIPW I + Q IS
Sbjct: 1153 ITGILGIPWRFLIGAELTIAQSRIS 1177
>gb|AAL07336.1| rpoC2 [Glycine max] gi|41018056|sp|Q8HVY3|RPOC2_SOYBN DNA-directed
RNA polymerase beta'' chain (PEP) (Plastid-encoded RNA
polymerase beta'' subunit) (RNA polymerase beta''
subunit)
Length = 1384
Score = 1382 bits (3577), Expect = 0.0
Identities = 702/956 (73%), Positives = 792/956 (82%), Gaps = 38/956 (3%)
Query: 159 IYIGSRCIVVRNQDIGIGLINRFINFQTQPIFIRTPFTCRNTSWICRLCYGRSPIHGDLV 218
IY GSRCI VRNQDIGIGLINRF QTQPI IRTPFTCRNTSWICRLCYG+SP HG LV
Sbjct: 257 IYRGSRCIAVRNQDIGIGLINRFKTLQTQPISIRTPFTCRNTSWICRLCYGQSPTHGHLV 316
Query: 219 ELGEAVGIIAGQSIGEPGTQLTLITFHTGGVFTGGTAEYVRSPSNGKIKFNENSAYPTRT 278
ELGEAVGIIAGQSIGEPGTQLTL TFHTGGVFTGGTAE VR+P NGKI+FNE+ +PTRT
Sbjct: 317 ELGEAVGIIAGQSIGEPGTQLTLRTFHTGGVFTGGTAEQVRAPYNGKIQFNEDLVHPTRT 376
Query: 279 RHGHPAFLCYIDLYVTIESNDIMHNVIIPPKSFLLVQNDQYVKSEQIIAEIRAGTYTLNL 338
RHGHPAFLCYIDLYVTIES DI+HNV IPPKSFLLVQN+QYVKSEQ+IAEIRAGTYT NL
Sbjct: 377 RHGHPAFLCYIDLYVTIESGDIIHNVTIPPKSFLLVQNNQYVKSEQVIAEIRAGTYTFNL 436
Query: 339 KEKIRKHIFSDSEGEMHWSTNIYHVSEFAYSNVHILPKTSHLWILSGNSHKSDTVSLSLL 398
KEK+RKH++SD EGEMHWST++YH SEF YSNVHILPKTSHLWILSG S++S +VS S+
Sbjct: 437 KEKVRKHVYSDLEGEMHWSTDVYHASEFRYSNVHILPKTSHLWILSGKSYRSGSVSFSIR 496
Query: 399 KDQDQMSTHSLPTAKRNTSNFLVSNNQVR-------------------------LCPDHC 433
KDQDQM+ H L T +R+ N L S +VR + DHC
Sbjct: 497 KDQDQMNIHYLSTGERDFCNLLASKKKVRHKLFRFNPSDKKERRISDYSIFNQIISIDHC 556
Query: 434 HFMHPTISPDTSNLLAKKRRNRFIIPFLFRSIRERNNELM--PDISVEIPIDGIIHKNSI 491
HF HPTI DT++LLAK+RRNR IIPF F+SI+ER+ ELM IS+EIPI+GI +NSI
Sbjct: 557 HFTHPTIFHDTTDLLAKRRRNRLIIPFQFQSIQERDKELMLASSISIEIPINGIFRRNSI 616
Query: 492 LAYFDDPQYRTQSSGIAKYKTIGIHSIFQKED-LIEYRGIREFKPKYQIKVDRFFFIPQE 550
LAYFDDPQYRTQSSGI KY+TIGI+SIF+KED LIEY+G++EFK KYQIKVD+FFFIP+E
Sbjct: 617 LAYFDDPQYRTQSSGITKYRTIGINSIFKKEDFLIEYQGVKEFKTKYQIKVDQFFFIPEE 676
Query: 551 VHILSESSSIMVRNNSIIGVNTPITLNKKSRVGGLVRVEKNKKKIELKIFSGDIHFPGEI 610
VHIL ESSSIMVRNNSI+ V+T ITLN +SRV GLVR+EK KKKIELKIFSGDI+FPGE+
Sbjct: 677 VHILPESSSIMVRNNSIVEVDTLITLNIRSRVRGLVRLEKKKKKIELKIFSGDIYFPGEM 736
Query: 611 DKISQHSAILIPPEMVKKKILRNQKKKTNWRYIQWITTTKKKYFVLVRPVILYDIADSIN 670
DKIS+HSA+LIPP VKK +KK NW Y+QWIT TKKKYFVLVRPVILY+IAD IN
Sbjct: 737 DKISRHSAVLIPPRTVKKN--SKEKKMKNWIYVQWITITKKKYFVLVRPVILYEIADRIN 794
Query: 671 LVKLFPQDLFKEWDNLELKVLNFILYGNGKSIRGILDTSIQLVRTCLVLNWNEDEKSSSI 730
LVKLFPQD+F+E DNLELKV+N+IL GNGKSIRGI DTSIQLVRTCLVLNW++D+K SSI
Sbjct: 795 LVKLFPQDMFQERDNLELKVINYILSGNGKSIRGISDTSIQLVRTCLVLNWDQDKKFSSI 854
Query: 731 EEALASFVEVSTNGLIRYFLRIDLVKSHISYIRKRNDPSSSGLISYNESDRININPFFSI 790
E A ASFVE+S GL+RYFLRIDLVKSHISYI KRNDPSS SD N+NPF+SI
Sbjct: 855 ENAHASFVEISIKGLVRYFLRIDLVKSHISYISKRNDPSSE---KKEGSDHTNMNPFYSI 911
Query: 791 Y---KENIQQSLSQKHGTIRMLLNRNKENRSFIILSSSNCFQMGPFNNVKYHNGIKEEIN 847
Y K +Q+S +Q GT+R LL NKE + F+ILSSSNCFQ+ FN+ KY+NGIKE IN
Sbjct: 912 YIYPKTKLQKSFNQNQGTVRTLLGINKECQFFLILSSSNCFQIRSFNHGKYYNGIKEGIN 971
Query: 848 QFKRNHKIPIKISLGPLGVAPQIANFFSFYHLITHNKISSIKKNLQLNKFKETFQVIKYY 907
Q +R+ IPIK SLGPLG+APQ+A+ F FY LITHN+IS I KN QL+K KETFQV +YY
Sbjct: 972 QIQRDAMIPIKNSLGPLGIAPQVAH-FDFYRLITHNQISII-KNGQLDKLKETFQVFQYY 1029
Query: 908 LMDENERIYKPDLYNNIILNPFHLNWDFIHPNYCEKTFPIISLGQFICENVCIVQTKNGP 967
+DENERIYKPDL +NIILNPF+LNW F+H NYCEKTF I+SLGQFICENVCIVQTKN P
Sbjct: 1030 FLDENERIYKPDLCSNIILNPFYLNWHFLHHNYCEKTFTIMSLGQFICENVCIVQTKNAP 1089
Query: 968 NLKSGQVITVQMDFVGIRLANPYLATPGATIHGHYGEMLYEGDILVTFIYEKSRSGDITQ 1027
+LKSGQ++TVQMD VGIR ANPYLATPGAT+HGHYGE+L EGDILVTFIYEKSRSGDITQ
Sbjct: 1090 HLKSGQILTVQMDSVGIRSANPYLATPGATVHGHYGEILSEGDILVTFIYEKSRSGDITQ 1149
Query: 1028 GLPKVEQVLEVRSIDSISMNLEKRIDAWNERITGILGIPWSRKISMSRKLLQDNIS 1083
GLPKVEQVLEVRSIDSISMNLEKR+D WN RIT ILGIPW I + Q IS
Sbjct: 1150 GLPKVEQVLEVRSIDSISMNLEKRVDTWNGRITKILGIPWGFLIGAELTIAQSRIS 1205
>emb|CAA27545.1| unnamed protein product [Pisum sativum] gi|81957|pir||S07137
DNA-directed RNA polymerase (EC 2.7.7.6) beta'-2 chain -
garden pea chloroplast (fragment)
gi|133447|sp|P12227|RPOC2_PEA DNA-directed RNA polymerase
beta'' chain (PEP) (Plastid-encoded RNA polymerase beta''
subunit) (RNA polymerase beta'' subunit)
Length = 1163
Score = 1382 bits (3576), Expect = 0.0
Identities = 708/956 (74%), Positives = 786/956 (82%), Gaps = 46/956 (4%)
Query: 159 IYIGSRCIVVRNQDIGIGLINRFINFQTQPIFIRTPFTCRNTSWICRLCYGRSPIHGDLV 218
IYIGSRCIVVRNQDIGIGLINRFI FQTQPIFIRTPFTCRNTSWICRLCYGRSPIHGDLV
Sbjct: 49 IYIGSRCIVVRNQDIGIGLINRFITFQTQPIFIRTPFTCRNTSWICRLCYGRSPIHGDLV 108
Query: 219 ELGEAVGIIAGQSIGEPGTQLTLITFHTGGVFTGGTAEYVRSPSNGKIKFNENSAYPTRT 278
ELGEAVGIIAGQSIGEPGTQLTL TFHTGGVFTGGTAEYVR+PSNGKIK NE+ +PTRT
Sbjct: 109 ELGEAVGIIAGQSIGEPGTQLTLRTFHTGGVFTGGTAEYVRAPSNGKIKLNEDLVHPTRT 168
Query: 279 RHGHPAFLCYIDLYVTIESNDIMHNVIIPPKSFLLVQNDQYVKSEQIIAEIRAGTYTLNL 338
RHG+PAF+C IDLYVTIES+DI+HNVIIPPKSFLLVQNDQYVKSEQ+IAEIRAGTYT NL
Sbjct: 169 RHGYPAFICNIDLYVTIESDDIIHNVIIPPKSFLLVQNDQYVKSEQVIAEIRAGTYTFNL 228
Query: 339 KEKIRKHIFSDSEGEMHWSTNIYHVSEFAYSNVHILPKTSHLWILSGNSHKSDTVSLSLL 398
KE++RKHI+SDSEGEMHWST++YH SEF YSNVHILPKTSHLWILSG S +S+T+ L
Sbjct: 229 KERVRKHIYSDSEGEMHWSTDVYHASEFMYSNVHILPKTSHLWILSGKSCRSNTIHFLLR 288
Query: 399 KDQDQMSTHSLPTAKRNTSNFLVSNNQVR-------------------------LCPDHC 433
KDQDQ++ SL K N SN L N+QV+ +C DH
Sbjct: 289 KDQDQITMDSLSNGKTNISNLLERNDQVKHKLFRFNTFGTKEKGISDYSIFNEIICTDHS 348
Query: 434 HFMHPTISPDTSNLLAKKRRNRFIIPFLFRSIRERNNELMPD--ISVEIPIDGIIHKNSI 491
+ P I DT LAK+RRNRF+IPF F+SI+ER NE M +S+EIPI+GI H+NSI
Sbjct: 349 Y---PAIFHDTFYFLAKRRRNRFLIPFPFQSIQERKNERMSPSGVSIEIPINGIFHRNSI 405
Query: 492 LAYFDDPQYRTQSSGIAKYKTIGIHSIFQKEDLIEYRGIREFKPKYQIKVDRFFFIPQEV 551
AYFDDPQYR SSGI KY+TIGIHSIFQKED IEYRGI+E KPK QI+VDRFFFIP+EV
Sbjct: 406 FAYFDDPQYRRHSSGITKYRTIGIHSIFQKEDFIEYRGIKELKPKSQIQVDRFFFIPEEV 465
Query: 552 HILSESSSIMVRNNSIIGVNTPITLNKKSRVGGLVRVEKNKKKIELKIFSGDIHFPGEID 611
HIL +SSS+MVRNNS++G+ TPIT N +SRVGGLVR++K KKKIELKIFSG+IHFPGE+D
Sbjct: 466 HILPKSSSLMVRNNSLVGIGTPITFNIRSRVGGLVRLDKKKKKIELKIFSGNIHFPGEMD 525
Query: 612 KISQHSAILIPPEMVKKKILRNQKKKTNWRYIQWITTTKKKYFVLVRPVILYDIADSINL 671
KIS+HSAILIPP VKKK KK NW Y+QWI TTKKKYFVLVRPVILY+I DS N
Sbjct: 526 KISRHSAILIPPGTVKKKKCNKSKKIKNWIYVQWIATTKKKYFVLVRPVILYEIPDSNNF 585
Query: 672 VKLFPQDLFKEWDNLELKVLNFILYGNGKSIRGILDTSIQLVRTCLVLNWNEDEKSSSIE 731
VKLFPQDLF+E DNLELKV+N+ILYGNGKSIRGI DT IQLVRTCLV NW++ + SSSIE
Sbjct: 586 VKLFPQDLFQEKDNLELKVVNYILYGNGKSIRGISDTRIQLVRTCLVFNWDDGKNSSSIE 645
Query: 732 EALASFVEVSTNGLIRYFLRIDLVKSHISYIRKRNDPSSSGLISYNESDRININPFFSIY 791
EA ASF+EV TNGLI YFLRIDLVKS+ SYIRKRN+PS GLI N+SDR INPFFSI+
Sbjct: 646 EAPASFIEVRTNGLIEYFLRIDLVKSNTSYIRKRNEPSGFGLIGDNKSDR--INPFFSIH 703
Query: 792 -KENIQQSLSQKHGTIRMLLNRNKENRSFIILSSSNCFQMGPFNNVKYHNGIKEE-INQF 849
K IQQSLSQ HGTIRMLLNRNKE RS+IILSSSNCFQM PFNN K HNGIK++ I
Sbjct: 704 SKGKIQQSLSQNHGTIRMLLNRNKECRSWIILSSSNCFQMRPFNNEKSHNGIKKDPIISI 763
Query: 850 KRNHKIPIKISLGPLGVAPQIANFFSFYHLITHNKISSIKKNLQLNKFKETFQVIKYYLM 909
N GPLG+A Q+ANF+S YHLITHN+IS I KNLQL+K E FQVIKYYLM
Sbjct: 764 NNN---------GPLGIALQVANFYSLYHLITHNQISII-KNLQLDKLTEIFQVIKYYLM 813
Query: 910 DENERIYKPDLYNNIILNPFHLNWDFIHPNYCEKTFPIISLGQFICENVCIVQTKNGPN- 968
DEN++I KPDLY+NIILNPFHLNW F+H YCEKTF ISLGQFICEN+CI Q KN P+
Sbjct: 814 DENDKICKPDLYSNIILNPFHLNWFFLHHFYCEKTFTRISLGQFICENICIAQMKNRPHL 873
Query: 969 -LKSGQVITVQMDFVGIRLANPYLATPGATIHGHYGEMLYEGDILVTFIYEKSRSGDITQ 1027
LKSGQVI VQMD V IR ANPYLATPGATIHGHYGE+L +GDILVTFIYEKSRSGDITQ
Sbjct: 874 KLKSGQVIIVQMDSVIIRSANPYLATPGATIHGHYGEILSQGDILVTFIYEKSRSGDITQ 933
Query: 1028 GLPKVEQVLEVRSIDSISMNLEKRIDAWNERITGILGIPWSRKISMSRKLLQDNIS 1083
GLPKVEQ+LE+RSIDSISMNLEKRIDAWNE IT I+GIPW I + Q IS
Sbjct: 934 GLPKVEQILEIRSIDSISMNLEKRIDAWNECITKIIGIPWGFLIGAELTIAQSRIS 989
>emb|CAJ00748.1| RNA polymerase beta'' chain [Cucumis sativus]
Length = 1394
Score = 1283 bits (3321), Expect = 0.0
Identities = 668/959 (69%), Positives = 760/959 (78%), Gaps = 43/959 (4%)
Query: 159 IYIGSRCIVVRNQDIGIGLINRFINFQTQPIFIRTPFTCRNTSWICRLCYGRSPIHGDLV 218
IY+G RCI VRNQDIGIGLINRFI FQTQPI IRTPFTCR+TSWICRLCYGRSP HGDLV
Sbjct: 257 IYMGPRCIGVRNQDIGIGLINRFITFQTQPISIRTPFTCRSTSWICRLCYGRSPTHGDLV 316
Query: 219 ELGEAVGIIAGQSIGEPGTQLTLITFHTGGVFTGGTAEYVRSPSNGKIKFNENSAYPTRT 278
ELGEAVGIIAGQSIGEPGTQLTL TFHTGGVFTGGTAE++R+PSNGKIKFNE+ +PTRT
Sbjct: 317 ELGEAVGIIAGQSIGEPGTQLTLRTFHTGGVFTGGTAEHIRAPSNGKIKFNEDLVHPTRT 376
Query: 279 RHGHPAFLCYIDLYVTIESNDIMHNVIIPPKSFLLVQNDQYVKSEQIIAEIRAGTYTLNL 338
RHGHPAFLCYIDLYVTIES DI+HNV IPPKS LLVQNDQYV+SEQ+IAEIRAGTYTLNL
Sbjct: 377 RHGHPAFLCYIDLYVTIESEDIIHNVTIPPKSLLLVQNDQYVESEQVIAEIRAGTYTLNL 436
Query: 339 KEKIRKHIFSDSEGEMHWSTNIYHVSEFAYSNVHILPKTSHLWILSGNSHKSDTVSLSLL 398
KE++RKHI+SDSEGEMHWST++YH EF YSNVH+LPKTSHLWILSG S V SL
Sbjct: 437 KERVRKHIYSDSEGEMHWSTDVYHAPEFTYSNVHLLPKTSHLWILSGGSCGCSLVPFSLY 496
Query: 399 KDQDQMSTHSLPTAKRNTSNFLVSNNQVR-------------------------LCPDHC 433
KDQDQ++ HSL +R S+ V+N++V LC
Sbjct: 497 KDQDQINVHSLCVERRYISSLSVNNDKVGQKFYGPDLSGKNENGIPDYSELNPILCTGQS 556
Query: 434 HFMHPTISPDTSNLLAKKRRNRFIIPFLFRSIRERNNELMP--DISVEIPIDGIIHKNSI 491
+ +P I S+LLAK+RRN FII F S++ER EL P IS+EIPI+GI +NSI
Sbjct: 557 NLTYPAIFHGNSDLLAKRRRNGFIIQ--FESLQEREKELRPPSGISIEIPINGIFRRNSI 614
Query: 492 LAYFDDPQYRTQSSGIAKYKTIGIHSIFQKEDLIEYRGIREFKPKY--QIKVDRFFFIPQ 549
LA+FDDPQYR SSGI KY TIG+HSI +KEDLIEYRG+++FKPKY Q+KVDRFFFIP+
Sbjct: 615 LAFFDDPQYRRNSSGITKYGTIGVHSILKKEDLIEYRGVKDFKPKYQMQMKVDRFFFIPE 674
Query: 550 EVHILSESSSIMVRNNSIIGVNTPITLNKKSRVGGLVRVEKNKKKIELKIFSGDIHFPGE 609
EVHIL ESSSIMVRNNSIIGV T +TL+ +SRVGGLVRVEK KK+IELKIFSGDIHFPGE
Sbjct: 675 EVHILPESSSIMVRNNSIIGVATRLTLSIRSRVGGLVRVEKKKKRIELKIFSGDIHFPGE 734
Query: 610 IDKISQHSAILIPPEMVKKKILRNQKKKTNWRYIQWITTTKKKYFVLVRPVILYDIADSI 669
+DKIS+H+ ILIPPE VKK +++K K NW Y+QWIT TKKKYFV VRPVI+Y++AD I
Sbjct: 735 MDKISRHNGILIPPERVKKNSKKSKKSK-NWIYVQWITPTKKKYFVFVRPVIIYELADGI 793
Query: 670 NLVKLFPQDLFKEWDNLELKVLNFILYGNGKSIRGILDTSIQLVRTCLVLNWNEDEKSSS 729
NLVKLFPQDL +E DNLEL+V N+ILYGNGK IRGI TSIQLVRTCL+LNW+ D+KSSS
Sbjct: 794 NLVKLFPQDLLQERDNLELRVANYILYGNGKPIRGISGTSIQLVRTCLLLNWDRDKKSSS 853
Query: 730 IEEALASFVEVSTNGLIRYFLRIDLVKSHISYIRKRNDPSSSGLISYNESDRININPFFS 789
IE+A ASFVEVSTNGL+R FLRIDL KS +YIRKR DPS SGLI NESDR NINPFFS
Sbjct: 854 IEDARASFVEVSTNGLVRNFLRIDLGKSDTAYIRKRKDPSGSGLIFNNESDRTNINPFFS 913
Query: 790 IY-KENIQQSLSQKHGTIRMLLNRNKENRSFIILSSSNCFQMGPFNNVKYHNGIKEEINQ 848
IY K + QS SQ GTIR LLNRNKE +S IILS+SNC Q+ FN+VK +N IKE
Sbjct: 914 IYSKTRVPQSPSQNQGTIRTLLNRNKERQSLIILSASNCLQIDLFNDVKDYNVIKE---S 970
Query: 849 FKRNHKIPIKISLGPLGVAPQIANFFSFYHLITHNKISSIKKNLQLNKFKETFQVIKYYL 908
K++ I I+ SLGPLG APQI NF+SFY+LITHN I S+ K LQL+ K+ FQV+KYYL
Sbjct: 971 SKKDPLISIRNSLGPLGAAPQIVNFYSFYYLITHNPI-SLTKYLQLDNLKQIFQVLKYYL 1029
Query: 909 MDENERIYKPDLYNNIILNPFHLNWDFIHP----NYCEKTFPIISLGQFICENVCIVQTK 964
MDEN I D NI+ N F+LNW F+H NYCE+T ISLGQF ENVCI K
Sbjct: 1030 MDENGGILNSDPCINIVFNTFNLNWHFLHDNYHNNYCEETPTRISLGQFFFENVCI--AK 1087
Query: 965 NGPNLKSGQVITVQMDFVGIRLANPYLATPGATIHGHYGEMLYEGDILVTFIYEKSRSGD 1024
N P+LKSGQ+I VQ+D + IR A PYLAT GAT+H HYGE+LYEGD LVTFIYEKSRSGD
Sbjct: 1088 NRPHLKSGQIIIVQVDSLVIRSAKPYLATSGATVHRHYGEILYEGDTLVTFIYEKSRSGD 1147
Query: 1025 ITQGLPKVEQVLEVRSIDSISMNLEKRIDAWNERITGILGIPWSRKISMSRKLLQDNIS 1083
ITQGLPKVEQVLEVRSIDSISM+LEKRI+ WNERIT ILGIPW I ++Q IS
Sbjct: 1148 ITQGLPKVEQVLEVRSIDSISMSLEKRIEGWNERITRILGIPWGFLIGAELTIVQSRIS 1206
>emb|CAA77410.1| RNA polymerase beta'' subunit [Nicotiana tabacum]
gi|11465944|ref|NP_054486.1| RNA polymerase beta'' chain
[Nicotiana tabacum]
Length = 1392
Score = 1271 bits (3288), Expect = 0.0
Identities = 650/957 (67%), Positives = 756/957 (78%), Gaps = 41/957 (4%)
Query: 159 IYIGSRCIVVRNQDIGIGLINRFINFQTQPIFIRTPFTCRNTSWICRLCYGRSPIHGDLV 218
IY+G RCI RNQDIGIGL+NRFI F+ QPI IRTPFTCR+TSWICRLCYGRSP HGDLV
Sbjct: 257 IYMGPRCIATRNQDIGIGLVNRFITFRAQPISIRTPFTCRSTSWICRLCYGRSPTHGDLV 316
Query: 219 ELGEAVGIIAGQSIGEPGTQLTLITFHTGGVFTGGTAEYVRSPSNGKIKFNENSAYPTRT 278
ELGEAVGIIAGQSIGEPGTQLTL TFHTGGVFTGGTAE+VR+PSNGKIKFNE+ +PTRT
Sbjct: 317 ELGEAVGIIAGQSIGEPGTQLTLRTFHTGGVFTGGTAEHVRAPSNGKIKFNEDLVHPTRT 376
Query: 279 RHGHPAFLCYIDLYVTIESNDIMHNVIIPPKSFLLVQNDQYVKSEQIIAEIRAGTYTLNL 338
RHGHPAFLC IDLYVTIES DI+HNV IPPKS LLVQNDQYV+SEQ+IAEIRAG TLN
Sbjct: 377 RHGHPAFLCSIDLYVTIESEDILHNVNIPPKSLLLVQNDQYVESEQVIAEIRAGISTLNF 436
Query: 339 KEKIRKHIFSDSEGEMHWSTNIYHVSEFAYSNVHILPKTSHLWILSGNSHKSDTVSLSLL 398
KEK+RKHI+SDS+GEMHWST++YH EF Y NVH+LPKTSHLWIL G +S V LS+
Sbjct: 437 KEKVRKHIYSDSDGEMHWSTDVYHAPEFTYGNVHLLPKTSHLWILLGRPCRSSLVYLSIH 496
Query: 399 KDQDQMSTHSLPTAKRNTSNFLVSNNQVR-------------------------LCPDHC 433
KDQDQM+ H L +R TSN V+N+Q R +C
Sbjct: 497 KDQDQMNAHFLSGKRRYTSNLSVTNDQARQKLFSSDFSGKKEDRIPDYSDLNRIICAGQY 556
Query: 434 HFMHPTISPDTSNLLAKKRRNRFIIPFLFRSIRERNNELMP--DISVEIPIDGIIHKNSI 491
+ ++ I + S+LL+K+RRN+FIIP SI+E NELMP IS+EIP++GI +NSI
Sbjct: 557 NLVYSPILHENSDLLSKRRRNKFIIP--LHSIQELENELMPCSGISIEIPVNGIFRRNSI 614
Query: 492 LAYFDDPQYRTQSSGIAKYKTIGIHSIFQKEDLIEYRGIREFKPKYQIKVDRFFFIPQEV 551
LAYFDDP+YR +SSGI KY T+ HS+ +KEDL+EYRG++EF+PKYQ+KVDRFFFIP+EV
Sbjct: 615 LAYFDDPRYRRKSSGIIKYGTVETHSVIKKEDLLEYRGVKEFRPKYQMKVDRFFFIPEEV 674
Query: 552 HILSESSSIMVRNNSIIGVNTPITLNKKSRVGGLVRVEKNKKKIELKIFSGDIHFPGEID 611
HIL SSSIMVRNNSI+GV+T ITLN +SRVGGLVRVE+ KK+IELKIFSGDIHFPGE D
Sbjct: 675 HILPGSSSIMVRNNSIVGVDTQITLNLRSRVGGLVRVERKKKRIELKIFSGDIHFPGETD 734
Query: 612 KISQHSAILIPPEMVKKKILRNQKKKTNWRYIQWITTTKKKYFVLVRPVILYDIADSINL 671
KIS+H+ +LIPP K+ + KK NW Y+Q IT +KKK+FVLVRPV+ Y+I D INL
Sbjct: 735 KISRHTGVLIPPGTGKRN-SKESKKVKNWIYVQRITPSKKKFFVLVRPVVTYEITDGINL 793
Query: 672 VKLFPQDLFKEWDNLELKVLNFILYGNGKSIRGILDTSIQLVRTCLVLNWNEDEKSSSIE 731
LFP D +E DN++L+++N+ILYGNGK IRGI DTSIQLVRTCLVLNWN+D+KSSS E
Sbjct: 794 ATLFPPDPLQERDNVQLRIVNYILYGNGKPIRGISDTSIQLVRTCLVLNWNQDKKSSSCE 853
Query: 732 EALASFVEVSTNGLIRYFLRIDLVKSHISYIRKRNDPSSSGLISYNESDRININPFFSIY 791
EA ASFVE+ TNGLIR+FLRI+LVKS ISYI KRNDPS SGL+S N SD NINPF SIY
Sbjct: 854 EARASFVEIRTNGLIRHFLRINLVKSPISYIGKRNDPSGSGLLSDNGSDCTNINPFSSIY 913
Query: 792 ---KENIQQSLSQKHGTIRMLLNRNKENRSFIILSSSNCFQMGPFNNVKYHNGIKEEINQ 848
K IQQS++Q GTI LLNRNKE +S IILS++NC +MGPF +VKYH+ IK+ I
Sbjct: 914 SYSKAKIQQSINQPQGTIHTLLNRNKECQSLIILSAANCSRMGPFKDVKYHSVIKKSI-- 971
Query: 849 FKRNHKIPIKISLGPLGVAPQIANFFSFYHLITHNKISSIKKNLQLNKFKETFQVI--KY 906
K++ IPI+ SLGPLG + I NF+S YHLITHN+I + LQL+ K+TFQVI KY
Sbjct: 972 -KKDPLIPIRNSLGPLGTSLPIENFYSSYHLITHNQI-LVTNYLQLDNLKQTFQVIKFKY 1029
Query: 907 YLMDENERIYKPDLYNNIILNPFHLNWDFIHPNYCEKTFPIISLGQFICENVCIVQTKNG 966
YLMDEN +I+ PD NIILNPF+LNW F+H NYCE+T IISLGQFICENVCI KNG
Sbjct: 1030 YLMDENGKIFNPDPCRNIILNPFNLNWYFLHHNYCEETSKIISLGQFICENVCI--AKNG 1087
Query: 967 PNLKSGQVITVQMDFVGIRLANPYLATPGATIHGHYGEMLYEGDILVTFIYEKSRSGDIT 1026
P LKSGQVI VQ+D + IR A PYLATPGAT+HGHYGE LYEGD LVTFIYEKSRSGDIT
Sbjct: 1088 PPLKSGQVILVQVDSIVIRSAKPYLATPGATVHGHYGETLYEGDTLVTFIYEKSRSGDIT 1147
Query: 1027 QGLPKVEQVLEVRSIDSISMNLEKRIDAWNERITGILGIPWSRKISMSRKLLQDNIS 1083
QGLPKVEQVLEVRS+DSISMNLEKRI+ WN+ IT ILGIPW I + Q IS
Sbjct: 1148 QGLPKVEQVLEVRSVDSISMNLEKRIEGWNKCITRILGIPWGFLIGAELTIAQSRIS 1204
>sp|P38550|RPOC2_TOBAC DNA-directed RNA polymerase beta'' chain (PEP) (Plastid-encoded RNA
polymerase beta'' subunit) (RNA polymerase beta''
subunit)
Length = 1388
Score = 1271 bits (3288), Expect = 0.0
Identities = 650/957 (67%), Positives = 756/957 (78%), Gaps = 41/957 (4%)
Query: 159 IYIGSRCIVVRNQDIGIGLINRFINFQTQPIFIRTPFTCRNTSWICRLCYGRSPIHGDLV 218
IY+G RCI RNQDIGIGL+NRFI F+ QPI IRTPFTCR+TSWICRLCYGRSP HGDLV
Sbjct: 253 IYMGPRCIATRNQDIGIGLVNRFITFRAQPISIRTPFTCRSTSWICRLCYGRSPTHGDLV 312
Query: 219 ELGEAVGIIAGQSIGEPGTQLTLITFHTGGVFTGGTAEYVRSPSNGKIKFNENSAYPTRT 278
ELGEAVGIIAGQSIGEPGTQLTL TFHTGGVFTGGTAE+VR+PSNGKIKFNE+ +PTRT
Sbjct: 313 ELGEAVGIIAGQSIGEPGTQLTLRTFHTGGVFTGGTAEHVRAPSNGKIKFNEDLVHPTRT 372
Query: 279 RHGHPAFLCYIDLYVTIESNDIMHNVIIPPKSFLLVQNDQYVKSEQIIAEIRAGTYTLNL 338
RHGHPAFLC IDLYVTIES DI+HNV IPPKS LLVQNDQYV+SEQ+IAEIRAG TLN
Sbjct: 373 RHGHPAFLCSIDLYVTIESEDILHNVNIPPKSLLLVQNDQYVESEQVIAEIRAGISTLNF 432
Query: 339 KEKIRKHIFSDSEGEMHWSTNIYHVSEFAYSNVHILPKTSHLWILSGNSHKSDTVSLSLL 398
KEK+RKHI+SDS+GEMHWST++YH EF Y NVH+LPKTSHLWIL G +S V LS+
Sbjct: 433 KEKVRKHIYSDSDGEMHWSTDVYHAPEFTYGNVHLLPKTSHLWILLGRPCRSSLVYLSIH 492
Query: 399 KDQDQMSTHSLPTAKRNTSNFLVSNNQVR-------------------------LCPDHC 433
KDQDQM+ H L +R TSN V+N+Q R +C
Sbjct: 493 KDQDQMNAHFLSGKRRYTSNLSVTNDQARQKLFSSDFSGKKEDRIPDYSDLNRIICAGQY 552
Query: 434 HFMHPTISPDTSNLLAKKRRNRFIIPFLFRSIRERNNELMP--DISVEIPIDGIIHKNSI 491
+ ++ I + S+LL+K+RRN+FIIP SI+E NELMP IS+EIP++GI +NSI
Sbjct: 553 NLVYSPILHENSDLLSKRRRNKFIIP--LHSIQELENELMPCSGISIEIPVNGIFRRNSI 610
Query: 492 LAYFDDPQYRTQSSGIAKYKTIGIHSIFQKEDLIEYRGIREFKPKYQIKVDRFFFIPQEV 551
LAYFDDP+YR +SSGI KY T+ HS+ +KEDL+EYRG++EF+PKYQ+KVDRFFFIP+EV
Sbjct: 611 LAYFDDPRYRRKSSGIIKYGTVETHSVIKKEDLLEYRGVKEFRPKYQMKVDRFFFIPEEV 670
Query: 552 HILSESSSIMVRNNSIIGVNTPITLNKKSRVGGLVRVEKNKKKIELKIFSGDIHFPGEID 611
HIL SSSIMVRNNSI+GV+T ITLN +SRVGGLVRVE+ KK+IELKIFSGDIHFPGE D
Sbjct: 671 HILPGSSSIMVRNNSIVGVDTQITLNLRSRVGGLVRVERKKKRIELKIFSGDIHFPGETD 730
Query: 612 KISQHSAILIPPEMVKKKILRNQKKKTNWRYIQWITTTKKKYFVLVRPVILYDIADSINL 671
KIS+H+ +LIPP K+ + KK NW Y+Q IT +KKK+FVLVRPV+ Y+I D INL
Sbjct: 731 KISRHTGVLIPPGTGKRN-SKESKKVKNWIYVQRITPSKKKFFVLVRPVVTYEITDGINL 789
Query: 672 VKLFPQDLFKEWDNLELKVLNFILYGNGKSIRGILDTSIQLVRTCLVLNWNEDEKSSSIE 731
LFP D +E DN++L+++N+ILYGNGK IRGI DTSIQLVRTCLVLNWN+D+KSSS E
Sbjct: 790 ATLFPPDPLQERDNVQLRIVNYILYGNGKPIRGISDTSIQLVRTCLVLNWNQDKKSSSCE 849
Query: 732 EALASFVEVSTNGLIRYFLRIDLVKSHISYIRKRNDPSSSGLISYNESDRININPFFSIY 791
EA ASFVE+ TNGLIR+FLRI+LVKS ISYI KRNDPS SGL+S N SD NINPF SIY
Sbjct: 850 EARASFVEIRTNGLIRHFLRINLVKSPISYIGKRNDPSGSGLLSDNGSDCTNINPFSSIY 909
Query: 792 ---KENIQQSLSQKHGTIRMLLNRNKENRSFIILSSSNCFQMGPFNNVKYHNGIKEEINQ 848
K IQQS++Q GTI LLNRNKE +S IILS++NC +MGPF +VKYH+ IK+ I
Sbjct: 910 SYSKAKIQQSINQPQGTIHTLLNRNKECQSLIILSAANCSRMGPFKDVKYHSVIKKSI-- 967
Query: 849 FKRNHKIPIKISLGPLGVAPQIANFFSFYHLITHNKISSIKKNLQLNKFKETFQVI--KY 906
K++ IPI+ SLGPLG + I NF+S YHLITHN+I + LQL+ K+TFQVI KY
Sbjct: 968 -KKDPLIPIRNSLGPLGTSLPIENFYSSYHLITHNQI-LVTNYLQLDNLKQTFQVIKFKY 1025
Query: 907 YLMDENERIYKPDLYNNIILNPFHLNWDFIHPNYCEKTFPIISLGQFICENVCIVQTKNG 966
YLMDEN +I+ PD NIILNPF+LNW F+H NYCE+T IISLGQFICENVCI KNG
Sbjct: 1026 YLMDENGKIFNPDPCRNIILNPFNLNWYFLHHNYCEETSKIISLGQFICENVCI--AKNG 1083
Query: 967 PNLKSGQVITVQMDFVGIRLANPYLATPGATIHGHYGEMLYEGDILVTFIYEKSRSGDIT 1026
P LKSGQVI VQ+D + IR A PYLATPGAT+HGHYGE LYEGD LVTFIYEKSRSGDIT
Sbjct: 1084 PPLKSGQVILVQVDSIVIRSAKPYLATPGATVHGHYGETLYEGDTLVTFIYEKSRSGDIT 1143
Query: 1027 QGLPKVEQVLEVRSIDSISMNLEKRIDAWNERITGILGIPWSRKISMSRKLLQDNIS 1083
QGLPKVEQVLEVRS+DSISMNLEKRI+ WN+ IT ILGIPW I + Q IS
Sbjct: 1144 QGLPKVEQVLEVRSVDSISMNLEKRIEGWNKCITRILGIPWGFLIGAELTIAQSRIS 1200
>ref|YP_086956.1| RNA polymerase beta II subunit [Panax ginseng]
gi|51235303|gb|AAT98499.1| RNA polymerase beta II subunit
[Panax ginseng]
Length = 1387
Score = 1266 bits (3277), Expect = 0.0
Identities = 653/952 (68%), Positives = 748/952 (77%), Gaps = 36/952 (3%)
Query: 159 IYIGSRCIVVRNQDIGIGLINRFINFQTQPIFIRTPFTCRNTSWICRLCYGRSPIHGDLV 218
IY+G RCI RNQDIG GL+NRFI F+ QPI+IRTPFTCR+TSWICRLCYGRSP HGDL
Sbjct: 257 IYLGPRCIATRNQDIGSGLVNRFITFRAQPIYIRTPFTCRSTSWICRLCYGRSPTHGDLA 316
Query: 219 ELGEAVGIIAGQSIGEPGTQLTLITFHTGGVFTGGTAEYVRSPSNGKIKFNENSAYPTRT 278
ELGEAVGIIAGQSIGEPGTQLTL TFHTGGVFTGGTAE+VR+PSNGKIKFNE+ +PTRT
Sbjct: 317 ELGEAVGIIAGQSIGEPGTQLTLRTFHTGGVFTGGTAEHVRAPSNGKIKFNEDLVHPTRT 376
Query: 279 RHGHPAFLCYIDLYVTIESNDIMHNVIIPPKSFLLVQNDQYVKSEQIIAEIRAGTYTLNL 338
RHGHPAFLC IDLYVTIES DI+HNV IPPKSFLLVQNDQYV+SEQ+IAEIRAGT TLN
Sbjct: 377 RHGHPAFLCSIDLYVTIESEDIIHNVNIPPKSFLLVQNDQYVESEQVIAEIRAGTSTLNF 436
Query: 339 KEKIRKHIFSDSEGEMHWSTNIYHVSEFAYSNVHILPKTSHLWILSGNSHKSDTVSLSLL 398
KEK+RKHI+SDSEGEMHW+T++YH F Y NVH+LPKTSHLWIL G +SD V+LS+
Sbjct: 437 KEKVRKHIYSDSEGEMHWNTDVYHAPAFTYGNVHLLPKTSHLWILLGEPCRSDLVALSIH 496
Query: 399 KDQDQMSTHSLPTAKRNTSNFLVSNNQVR---LCPD-------------------HCHFM 436
KDQDQM+ HSL +R SN V+N+Q R D HC+
Sbjct: 497 KDQDQMNAHSLSVKRRYISNLSVTNDQARHKFFSSDFSGKKEDRITDYSELNRIGHCNLP 556
Query: 437 HPTISPDTSNLLAKKRRNRFIIPFLFRSIRERNNELMPD--ISVEIPIDGIIHKNSILAY 494
+ I S+LLAK+RRNRFIIP +SI+E NELMP IS+EIPI GI K SI+AY
Sbjct: 557 YLAILHANSDLLAKRRRNRFIIP--LQSIQEHENELMPSSGISIEIPIHGIFRKKSIIAY 614
Query: 495 FDDPQYRTQSSGIAKYKTIGIHSIFQKEDLIEYRGIREFKPKYQIKVDRFFFIPQEVHIL 554
FDDP+YR +SSGI KY TI +HSI +KEDLIEYRG++EF+PKYQ+KVDRFFFIP+EVHIL
Sbjct: 615 FDDPRYRRKSSGITKYGTIEVHSIVKKEDLIEYRGVKEFRPKYQMKVDRFFFIPEEVHIL 674
Query: 555 SESSSIMVRNNSIIGVNTPITLNKKSRVGGLVRVEKNKKKIELKIFSGDIHFPGEIDKIS 614
SSSIMVRNNSIIGV+T ITL +SRVGGLVRVE+ KK+IELKIFSGDIHFPGE DKIS
Sbjct: 675 PGSSSIMVRNNSIIGVDTQITLTTRSRVGGLVRVERKKKRIELKIFSGDIHFPGETDKIS 734
Query: 615 QHSAILIPPEMVKKKILRNQKKKTNWRYIQWITTTKKKYFVLVRPVILYDIADSINLVKL 674
+HS +LIPP K + KK NW Y+Q IT TKKKYFVLVRPV+ Y+I D INL L
Sbjct: 735 RHSGVLIPPGTGKTN-SKESKKWKNWIYVQRITPTKKKYFVLVRPVVTYEITDGINLATL 793
Query: 675 FPQDLFKEWDNLELKVLNFILYGNGKSIRGILDTSIQLVRTCLVLNWNEDEKSSSIEEAL 734
F DL +E DN++L+V+N+ILYG GK IRG DTSIQLVRTCLVLNW +D+KSSSIEEA
Sbjct: 794 FFPDLLQERDNVQLRVVNYILYGTGKPIRGFYDTSIQLVRTCLVLNWVQDKKSSSIEEAR 853
Query: 735 ASFVEVSTNGLIRYFLRIDLVKSHISYIRKRNDPSSSGLISYNESDRININPFFSIY--- 791
SFVE+ N LIR FL+IDL KS I Y KR DPS SGLIS N SDR NINPF S +
Sbjct: 854 TSFVEIRINSLIRDFLKIDLAKSPILYTGKRKDPSGSGLISENGSDRTNINPFSSSFFYS 913
Query: 792 KENIQQSLSQKHGTIRMLLNRNKENRSFIILSSSNCFQMGPFNNVKYHNGIKEEINQFKR 851
K I++SL+Q GTI LLNRNKE +S IILSSSNCF+MGPFN+VKYHN IKE I ++
Sbjct: 914 KARIKESLNQNQGTIHTLLNRNKECQSLIILSSSNCFRMGPFNDVKYHNVIKESI---QK 970
Query: 852 NHKIPIKISLGPLGVAPQIANFFSFYHLITHNKISSIKKNLQLNKFKETFQVIKYYLMDE 911
+ I I+ SLGPLG A QIANF+SF HLIT+N+I + LQL+ K++FQV+KYYLMDE
Sbjct: 971 DPLIQIRNSLGPLGTALQIANFYSFSHLITYNQI-LVTNYLQLDNLKQSFQVLKYYLMDE 1029
Query: 912 NERIYKPDLYNNIILNPFHLNWDFIHPNYCEKTFPIISLGQFICENVCIVQTKNGPNLKS 971
N +IY PD NIILNPF+LNW F+H NYCE+T +SLGQFICENVCI KNGP+LK
Sbjct: 1030 NGKIYNPDRCCNIILNPFNLNWFFLHHNYCEETSTTMSLGQFICENVCI--AKNGPHLKP 1087
Query: 972 GQVITVQMDFVGIRLANPYLATPGATIHGHYGEMLYEGDILVTFIYEKSRSGDITQGLPK 1031
GQV+ VQ+D V IR A PYLATPGAT+HGHYGE+LYEGD LVTFIYEKSRSGDITQGLPK
Sbjct: 1088 GQVLIVQVDSVVIRSAKPYLATPGATVHGHYGEILYEGDTLVTFIYEKSRSGDITQGLPK 1147
Query: 1032 VEQVLEVRSIDSISMNLEKRIDAWNERITGILGIPWSRKISMSRKLLQDNIS 1083
VEQVLEVRSIDSISMNLEKR++ WNE IT LGIPW I ++Q IS
Sbjct: 1148 VEQVLEVRSIDSISMNLEKRVEGWNECITRNLGIPWGFLIGAELTIVQSRIS 1199
>emb|CAC88034.1| RNA polymerase beta II subunit [Atropa belladonna]
gi|28261707|ref|NP_783222.1| RNA polymerase beta'' chain
[Atropa belladonna] gi|41018087|sp|Q8S8Y1|RPOC2_ATRBE
DNA-directed RNA polymerase beta'' chain (PEP)
(Plastid-encoded RNA polymerase beta'' subunit) (RNA
polymerase beta'' subunit)
Length = 1389
Score = 1255 bits (3247), Expect = 0.0
Identities = 650/957 (67%), Positives = 749/957 (77%), Gaps = 44/957 (4%)
Query: 159 IYIGSRCIVVRNQDIGIGLINRFINFQTQPIFIRTPFTCRNTSWICRLCYGRSPIHGDLV 218
IY+G RCI RNQDIGIGL+NRFI F+ QPI IRTPFTCR+TSWICRLCYGRSP HGDLV
Sbjct: 257 IYMGPRCIATRNQDIGIGLVNRFITFRAQPISIRTPFTCRSTSWICRLCYGRSPTHGDLV 316
Query: 219 ELGEAVGIIAGQSIGEPGTQLTLITFHTGGVFTGGTAEYVRSPSNGKIKFNENSAYPTRT 278
ELGEAVGIIAGQSIGEPGTQLTL TFHTGGVFTGGTAE+VR+PSNGKIKFNE+ +PTRT
Sbjct: 317 ELGEAVGIIAGQSIGEPGTQLTLRTFHTGGVFTGGTAEHVRAPSNGKIKFNEDLVHPTRT 376
Query: 279 RHGHPAFLCYIDLYVTIESNDIMHNVIIPPKSFLLVQNDQYVKSEQIIAEIRAGTYTLNL 338
RHGHPAFLC IDLYVTIES DI+HNV IPPKS LLVQNDQYV+SEQ+IAEIRAG TLN
Sbjct: 377 RHGHPAFLCSIDLYVTIESEDILHNVNIPPKSLLLVQNDQYVESEQVIAEIRAGISTLNF 436
Query: 339 KEKIRKHIFSDSEGEMHWSTNIYHVSEFAYSNVHILPKTSHLWILSGNSHKSDTVSLSLL 398
KEK+RKHI+SDS+GEMHWST++YH EF Y NVH+LPKTSHLWIL G KS V LS+
Sbjct: 437 KEKVRKHIYSDSDGEMHWSTDVYHAPEFTYGNVHLLPKTSHLWILLGGPCKSSLVYLSIH 496
Query: 399 KDQDQMSTHSLPTAKRNTSNFLVSNNQVR-------------------------LCPDHC 433
KDQDQM+ HSL +R TSN V+N+Q R +C
Sbjct: 497 KDQDQMNAHSLSGKQRYTSNLSVTNDQARQKLFSSGFSGKKEDRIPDYSDLNRIICTGQY 556
Query: 434 HFMHPTISPDTSNLLAKKRRNRFIIPFLFRSIRERNNELMP--DISVEIPIDGIIHKNSI 491
+ ++ I + S+LL+K+RRN+FIIP SI+E NELMP IS+EIP++GI +NSI
Sbjct: 557 NLVYSPILHENSDLLSKRRRNKFIIP--LHSIQELENELMPCSGISIEIPVNGIFRRNSI 614
Query: 492 LAYFDDPQYRTQSSGIAKYKTIGIHSIFQKEDLIEYRGIREFKPKYQIKVDRFFFIPQEV 551
LAYFDDP+YR +SSGI KY TI HS+ +KEDLIEYRG++EF+PKYQ+KVDRFFFIP+EV
Sbjct: 615 LAYFDDPRYRRKSSGIIKYGTIETHSVIKKEDLIEYRGVKEFRPKYQMKVDRFFFIPEEV 674
Query: 552 HILSESSSIMVRNNSIIGVNTPITLNKKSRVGGLVRVEKNKKKIELKIFSGDIHFPGEID 611
HIL SSSIMVRNNSI+GV+T ITLN +SRVGGLVRVE+ KK+IELKIFSGDIHFPGE D
Sbjct: 675 HILPGSSSIMVRNNSIVGVDTQITLNLRSRVGGLVRVERKKKRIELKIFSGDIHFPGETD 734
Query: 612 KISQHSAILIPPEMVKKKILRNQKKKTNWRYIQWITTTKKKYFVLVRPVILYDIADSINL 671
KIS+H+ +LIPP K + KK W Y+Q IT +KKK+FVLVRPV+ Y+I D IN
Sbjct: 735 KISRHTGLLIPPGTGKIN-SKESKKVKKWIYVQRITPSKKKFFVLVRPVVTYEITDGINF 793
Query: 672 VKLFPQDLFKEWDNLELKVLNFILYGNGKSIRGILDTSIQLVRTCLVLNWNEDEKSSSIE 731
LFP D +E DN++L+++N+ILYGNGK IRGI DTSIQLVRTCLVLNWN+D+KSSS E
Sbjct: 794 ETLFPPDPLQERDNVQLRIVNYILYGNGKPIRGISDTSIQLVRTCLVLNWNQDKKSSSCE 853
Query: 732 EALASFVEVSTNGLIRYFLRIDLVKSHISYIRKRNDPSSSGLISYNESDRININPFFSIY 791
EA ASFVE+ TNGLIR+FLRI+LVKS ISYI KRNDPS SGL+S N SD NINPF SIY
Sbjct: 854 EARASFVEIRTNGLIRHFLRINLVKSPISYIGKRNDPSGSGLLSDNGSDCTNINPFSSIY 913
Query: 792 ---KENIQQSLSQKHGTIRMLLNRNKENRSFIILSSSNCFQMGPFNNVKYHNGIKEEINQ 848
K IQQSL+Q GTI LLNRNKE +S IILSS+NC +MG +KYH+ IK+ I
Sbjct: 914 SYSKAKIQQSLNQPQGTIHTLLNRNKECQSLIILSSANCSRMG---TLKYHSVIKDSI-- 968
Query: 849 FKRNHKIPIKISLGPLGVAPQIANFFSFYHLITHNKISSIKKNLQLNKFKETFQVI--KY 906
K++ IPI+ SLGPLG I NF+S Y LITHN+I + LQL+ K+TFQVI KY
Sbjct: 969 -KKDPLIPIRNSLGPLGTCLPIENFYSSYRLITHNQI-LVTNYLQLDNLKQTFQVIKFKY 1026
Query: 907 YLMDENERIYKPDLYNNIILNPFHLNWDFIHPNYCEKTFPIISLGQFICENVCIVQTKNG 966
YLMDEN +I+ PD NIILNPF+LNW F+H NYCE+T IISLGQFICENVCI KNG
Sbjct: 1027 YLMDENGKIFNPDPCRNIILNPFNLNWYFLHHNYCEETSKIISLGQFICENVCI--AKNG 1084
Query: 967 PNLKSGQVITVQMDFVGIRLANPYLATPGATIHGHYGEMLYEGDILVTFIYEKSRSGDIT 1026
P LKSGQVI VQ+D + IR A PYLATPGAT+HGHYGE LYEGD LVTFIYEKSRSGDIT
Sbjct: 1085 PPLKSGQVILVQVDSIVIRSAKPYLATPGATVHGHYGETLYEGDTLVTFIYEKSRSGDIT 1144
Query: 1027 QGLPKVEQVLEVRSIDSISMNLEKRIDAWNERITGILGIPWSRKISMSRKLLQDNIS 1083
QGLPKVEQVLEVRSIDSISMNLEKR++ WN+ IT ILGIPW I + Q IS
Sbjct: 1145 QGLPKVEQVLEVRSIDSISMNLEKRVEGWNKCITRILGIPWGFLIGAELTIAQSRIS 1201
>emb|CAB88715.1| RNA polymerase beta'' subunit [Spinacia oleracea]
gi|11497514|ref|NP_054922.1| RNA polymerase beta'' chain
[Spinacia oleracea] gi|81503|pir||A29959 DNA-directed RNA
polymerase (EC 2.7.7.6) beta'' chain - spinach
chloroplast gi|133448|sp|P11704|RPOC2_SPIOL DNA-directed
RNA polymerase beta'' chain (PEP) (Plastid-encoded RNA
polymerase beta'' subunit) (RNA polymerase beta''
subunit)
Length = 1361
Score = 1236 bits (3198), Expect = 0.0
Identities = 641/952 (67%), Positives = 743/952 (77%), Gaps = 47/952 (4%)
Query: 159 IYIGSRCIVVRNQDIGIGLINRFINFQTQPIFIRTPFTCRNTSWICRLCYGRSPIHGDLV 218
IY+GSRCI RNQDIG+GL+NRFI +TQ I IRTPFTCR+ SWICRLCYGRSP HG LV
Sbjct: 257 IYMGSRCIATRNQDIGVGLVNRFITLRTQLISIRTPFTCRSASWICRLCYGRSPTHGGLV 316
Query: 219 ELGEAVGIIAGQSIGEPGTQLTLITFHTGGVFTGGTAEYVRSPSNGKIKFNENSAYPTRT 278
ELGEAVGIIAGQSIGEPGTQLTL TFHTGGVFTGGTAE+VR+PSNGKI+FNE+ +PTRT
Sbjct: 317 ELGEAVGIIAGQSIGEPGTQLTLRTFHTGGVFTGGTAEHVRAPSNGKIQFNEDLVHPTRT 376
Query: 279 RHGHPAFLCYIDLYVTIESNDIMHNVIIPPKSFLLVQNDQYVKSEQIIAEIRAGTYTLNL 338
RHGHPAFLCYIDLYVTIES+DI+HNV IPPKSFLLVQNDQYV+SEQ+IAEIRAGT TLN
Sbjct: 377 RHGHPAFLCYIDLYVTIESDDILHNVNIPPKSFLLVQNDQYVESEQVIAEIRAGTSTLNF 436
Query: 339 KEKIRKHIFSDSEGEMHWSTNIYHVSEFAYSNVHILPKTSHLWILSGNSHKSDTVSLSLL 398
KE++RKHI+SDSEGEMHWST++YH EF Y NVH+LPKTSHLW+LSG ++S V SL
Sbjct: 437 KERVRKHIYSDSEGEMHWSTDVYHAPEFTYGNVHLLPKTSHLWVLSGKPYRSSVVPFSLS 496
Query: 399 KDQDQMSTHSLPTAKRNTSNFLVSNNQV-------------RLCP-------DHCHFMHP 438
KDQDQM+THSL + SN V+N+QV R+ HC+ ++P
Sbjct: 497 KDQDQMNTHSLSFEQIYISNPSVTNDQVKDKLSDSFSKKEDRITDYSELNRIGHCNLIYP 556
Query: 439 TISPDTSNLLAKKRRNRFIIPFLFRSIRERNNELM--PDISVEIPIDGIIHKNSILAYFD 496
+ D LLAKKRRNRFIIP F+ +ER ELM IS+EIPI+GI KNSI AYFD
Sbjct: 557 AKNLD---LLAKKRRNRFIIP--FQGSQERKKELMSLSGISIEIPINGIFRKNSIFAYFD 611
Query: 497 DPQYRTQSSGIAKYKTIGIHSIFQKEDLIEYRGIREFKPKYQIKVDRFFFIPQEVHILSE 556
DP+YR +SSGI KY TI +HSI +KEDLIEYRG++EF+PKYQ+KVDRFFFIP+EVHIL+
Sbjct: 612 DPRYRRKSSGITKYGTIEMHSIVKKEDLIEYRGVKEFRPKYQMKVDRFFFIPEEVHILAG 671
Query: 557 SSSIMVRNNSIIGVNTPITLNKKSRVGGLVRVEKNKKKIELKIFSGDIHFPGEIDKISQH 616
SSSIMVRNNSIIGV+T ITLN +SR+GG+VRVE+ KKKIEL IFSGDIHFPGE DKIS+H
Sbjct: 672 SSSIMVRNNSIIGVDTWITLNTRSRIGGVVRVERKKKKIELTIFSGDIHFPGETDKISRH 731
Query: 617 SAILIPPEMVKKKILRNQKKKTNWRYIQWITTTKKKYFVLVRPVILYDIADSINLVKLFP 676
S ILIPP K +N KK W Y+Q IT TKKKYFVLVRPV+ Y+I D INL LFP
Sbjct: 732 SGILIPPSRKNSKDSKNLKK---WIYVQRITPTKKKYFVLVRPVVPYEITDGINLATLFP 788
Query: 677 QDLFKEWDNLELKVLNFILYGNGKSIRGILDTSIQLVRTCLVLNWNEDEKSSSIEEALAS 736
QDL +E DN++L+V+N+ILYGNGK RGI DTSIQLVRTCLVLNWN+D+K SSIEEA S
Sbjct: 789 QDLLQERDNVQLRVVNYILYGNGKVTRGISDTSIQLVRTCLVLNWNQDKKGSSIEEARGS 848
Query: 737 FVEVSTNGLIRYFLRIDLVKSHISYIRKRNDPSSSGLISYNESDRININPFFSIY---KE 793
FVEV TNG+I+ FL+++LVK ISYI KRNDPSS SD N+NPF+SIY K
Sbjct: 849 FVEVRTNGMIQDFLKVNLVKPAISYISKRNDPSSE---KKEGSDHTNMNPFYSIYIYPKT 905
Query: 794 NIQQSLSQKHGTIRMLLNRNKENRSFIILSSSNCFQMGPFNNVKYHNGIKEEINQFKRNH 853
+Q+S +Q GT+R LL NKE + F+ILSSSNCF++GPF VKY + K++
Sbjct: 906 KLQKSFNQNQGTVRTLLGINKECQFFLILSSSNCFRIGPFKGVKYPKEL------IKKDP 959
Query: 854 KIPIKISLGPLGVAPQIANFFSFYHLITHNKISSIKKNLQLNKFKETFQVIK--YYLMDE 911
IPI+ S GPLG A QIANFFSFY+LITHN+I + LQL+ K+TFQ K YYLMDE
Sbjct: 960 LIPIRNSFGPLGTALQIANFFSFYYLITHNQI-LVTNYLQLDNLKQTFQPFKFQYYLMDE 1018
Query: 912 NERIYKPDLYNNIILNPFHLNWDFIHPNYCEKTFPIISLGQFICENVCIVQTKNGPNLKS 971
N RIY PD +NII NPF LNW F+H ++CE+T I LGQF+CENVCI TK G +LKS
Sbjct: 1019 NGRIYNPDPCSNIIFNPFKLNWYFLHYHFCEETSTKIDLGQFVCENVCI--TKKGTHLKS 1076
Query: 972 GQVITVQMDFVGIRLANPYLATPGATIHGHYGEMLYEGDILVTFIYEKSRSGDITQGLPK 1031
GQV+ VQ D V IR A PYLATPGAT+HGHYGE++YEGD LVTFIYEKSRSGDITQGLPK
Sbjct: 1077 GQVLIVQFDSVVIRSAKPYLATPGATLHGHYGEIIYEGDTLVTFIYEKSRSGDITQGLPK 1136
Query: 1032 VEQVLEVRSIDSISMNLEKRIDAWNERITGILGIPWSRKISMSRKLLQDNIS 1083
VEQVLEVRSIDSIS+NLEKRID+WNERIT ILG PW I + Q IS
Sbjct: 1137 VEQVLEVRSIDSISINLEKRIDSWNERITRILGSPWGFLIGAELTIAQSRIS 1188
>emb|CAD28711.1| RNA polymerase beta' subunit-2 [Calycanthus floridus var. glaucus]
gi|32480833|ref|NP_862744.1| RNA polymerase beta'' chain
[Calycanthus floridus var. glaucus]
gi|41017946|sp|Q7YJY0|RPOC2_CALFE DNA-directed RNA
polymerase beta'' chain (PEP) (Plastid-encoded RNA
polymerase beta'' subunit) (RNA polymerase beta''
subunit)
Length = 1377
Score = 1233 bits (3189), Expect = 0.0
Identities = 642/954 (67%), Positives = 746/954 (77%), Gaps = 40/954 (4%)
Query: 159 IYIGSRCIVVRNQDIGIGLINRFINFQTQPIFIRTPFTCRNTSWICRLCYGRSPIHGDLV 218
IY+G RCI RNQDIGIGL+NRFI F+ QPI+IRTPF CR+TSWICRLCYGRSP HGDLV
Sbjct: 256 IYMGPRCIAARNQDIGIGLVNRFITFRAQPIYIRTPFLCRSTSWICRLCYGRSPAHGDLV 315
Query: 219 ELGEAVGIIAGQSIGEPGTQLTLITFHTGGVFTGGTAEYVRSPSNGKIKFNENSAYPTRT 278
ELGEAVGIIAGQSIGEPGTQLTL TFHTGGVFTGGTAE+VR+P NGKI+FNE+ +PTRT
Sbjct: 316 ELGEAVGIIAGQSIGEPGTQLTLRTFHTGGVFTGGTAEHVRAPFNGKIQFNEDLVHPTRT 375
Query: 279 RHGHPAFLCYIDLYVTIESNDIMHNVIIPPKSFLLVQNDQYVKSEQIIAEIRAGTYTLNL 338
RHGHPAFLCY DLYVTIES+DI+HNV IP KSFLLVQNDQYV+SEQ+IAEIRAGT T NL
Sbjct: 376 RHGHPAFLCYTDLYVTIESHDILHNVNIPQKSFLLVQNDQYVESEQVIAEIRAGTSTFNL 435
Query: 339 --KEKIRKHIFSDSEGEMHWSTNIYHVSEFAYSNVHILPKTSHLWILSGNSHKSDTVSLS 396
KEK+RKHI+SDSEGEMHWST++YH E+ Y NVH+LPKTSHLWILSG +S V S
Sbjct: 436 KVKEKVRKHIYSDSEGEMHWSTDVYHAPEYTYGNVHLLPKTSHLWILSGGLCRSSIVPFS 495
Query: 397 LLKDQDQMSTHSLPTAKRNTSNFLVSNNQVR--------------LCPD----------- 431
L KDQDQM+ HSL +R S+ V+N +VR PD
Sbjct: 496 LHKDQDQMNVHSLSVEQRYISDLSVTNVRVRHKLFSSDSSGKKGGRAPDYSGPDRIISNG 555
Query: 432 HCHFMHPTISPDTSNLLAKKRRNRFIIPFLFRSIRERNNELMP--DISVEIPIDGIIHKN 489
H +F++P I + S+LLAK+RRNRFIIP F+S +ER ELMP IS+EIPI+GI+ +N
Sbjct: 556 HWNFIYPAILHENSDLLAKRRRNRFIIP--FQSDQEREKELMPRSGISIEIPINGILRRN 613
Query: 490 SILAYFDDPQYRTQSSGIAKYKTIGIHSIFQKEDLIEYRGIREFKPKYQIKVDRFFFIPQ 549
SILAYFDDP+YR SSGI KY TIG+ SI +KEDLIEYR +EF+PKYQ+KVDRFFFIP+
Sbjct: 614 SILAYFDDPRYRRSSSGITKYGTIGVDSIVKKEDLIEYRRAKEFRPKYQMKVDRFFFIPE 673
Query: 550 EVHILSESSSIMVRNNSIIGVNTPITLNKKSRVGGLVRVEKNKKKIELKIFSGDIHFPGE 609
EVHIL SS +MVRNNSIIGVNT I LN +SRVGGLVRVE+ KK+IELKIFSGDIHFPGE
Sbjct: 674 EVHILPASSPVMVRNNSIIGVNTRIALNTRSRVGGLVRVERKKKRIELKIFSGDIHFPGE 733
Query: 610 IDKISQHSAILIPPEMVKKKILRNQKKKTNWRYIQWITTTKKKYFVLVRPVILYDIADSI 669
DKIS+HS ILIPP KK + + KK NW Y+Q IT TKKKYFVLVRPV+ Y+IAD I
Sbjct: 734 TDKISRHSGILIPPGTGKKNV-KESKKWKNWIYVQRITPTKKKYFVLVRPVVTYEIADGI 792
Query: 670 NLVKLFPQDLFKEWDNLELKVLNFILYGNGKSIRGILDTSIQLVRTCLVLNWNEDEKSSS 729
NL LFPQD +E DN++L+V+N+ILYGNGK IRGI TS+QLVRTCLVLNW++D ++ S
Sbjct: 793 NLETLFPQDPLQERDNVQLRVVNYILYGNGKPIRGISHTSLQLVRTCLVLNWDQD-RNGS 851
Query: 730 IEEALASFVEVSTNGLIRYFLRIDLVKSHISYIRKRNDPSSSGLISYNESDRININPFFS 789
IEE ASFVEV NGLIR FL+IDLVKS I Y KRND +SSG I N SDR NINPF+
Sbjct: 852 IEEVHASFVEVRANGLIRDFLKIDLVKSPILYSGKRNDTTSSGFIPNNGSDRTNINPFY- 910
Query: 790 IYKENIQQSLSQKHGTIRMLLNRNKENRSFIILSSSNCFQMGPFNNVKYHNGIKEEINQF 849
+K I QSL+Q GTIR LLNRNKE +SF+ILSSS+C ++G FN K H KE I
Sbjct: 911 -FKARI-QSLTQHQGTIRTLLNRNKECQSFLILSSSDCSRIGSFNGSKSHKVTKESIT-I 967
Query: 850 KRNHKIPIKISLGPLGVAPQIANFFSFYHLITHNKISSIKKNLQLNKFKETFQVIKYYLM 909
K + IPI+ SLGPLG P+IANF S Y+LITHN+I + K L L+ K+TFQV+KYYLM
Sbjct: 968 KEDPTIPIRNSLGPLGTVPKIANFDSSYYLITHNQI-LLNKYLSLDNLKQTFQVLKYYLM 1026
Query: 910 DENERIYKPDLYNNIILNPFHLNWDFIHPNYCEKTFPIISLGQFICENVCIVQTKNGPNL 969
DEN RIY PD +NII NPF LNW F+ +YCE+T II+ GQFICENVCI +K GP++
Sbjct: 1027 DENGRIYNPDPRSNIIFNPFDLNWCFLPHDYCEETSTIINPGQFICENVCI--SKYGPHI 1084
Query: 970 KSGQVITVQMDFVGIRLANPYLATPGATIHGHYGEMLYEGDILVTFIYEKSRSGDITQGL 1029
KSGQ++ V++D + IR A P+LATPGAT+HGH GE+LYEGD LVTFIYEKSRSGDITQGL
Sbjct: 1085 KSGQILIVRVDSLVIRSAKPHLATPGATVHGHCGEILYEGDTLVTFIYEKSRSGDITQGL 1144
Query: 1030 PKVEQVLEVRSIDSISMNLEKRIDAWNERITGILGIPWSRKISMSRKLLQDNIS 1083
PKVEQVLE RSIDSISMNLEKR++ WNERIT ILGIPW I + Q IS
Sbjct: 1145 PKVEQVLEARSIDSISMNLEKRVEGWNERITKILGIPWGFLIGAELTIAQSRIS 1198
>dbj|BAD93459.1| RNA polymerase beta chain [Silene latifolia]
Length = 1373
Score = 1209 bits (3129), Expect = 0.0
Identities = 626/955 (65%), Positives = 733/955 (76%), Gaps = 47/955 (4%)
Query: 159 IYIGSRCIVVRNQDIGIGLINRFINFQTQPIFIRTPFTCRNTSWICRLCYGRSPIHGDLV 218
IY+GSRCI RNQDIG+GL+NRFI F+TQPI IRTPFTCR+TSWICRLCYGRSP HGDLV
Sbjct: 253 IYLGSRCIATRNQDIGVGLVNRFITFRTQPIAIRTPFTCRSTSWICRLCYGRSPTHGDLV 312
Query: 219 ELGEAVGIIAGQSIGEPGTQLTLITFHTGGVFTGGTAEYVRSPSNGKIKFNENSAYPTRT 278
ELGEAVGIIAGQSIGEPGTQLTL TFHTGGVFTGGTAE+VR+P NGKIKFNE +PTRT
Sbjct: 313 ELGEAVGIIAGQSIGEPGTQLTLRTFHTGGVFTGGTAEHVRAPYNGKIKFNEGLVHPTRT 372
Query: 279 RHGHPAFLCYIDLYVTIESNDIMHNVIIPPKSFLLVQNDQYVKSEQIIAEIRAGTYTLNL 338
RHGHPAFLCYIDLYVTIES D +HNV IPPKSFLLVQNDQYV+SEQ+IAEIRAG TLN
Sbjct: 373 RHGHPAFLCYIDLYVTIESEDSLHNVNIPPKSFLLVQNDQYVESEQVIAEIRAGASTLNF 432
Query: 339 KEKIRKHIFSDSEGEMHWSTNIYHVSEFAYSNVHILPKTSHLWILSGNSHKSDTVSLSLL 398
KEK+RKHI+SDSEGEMHWST++YH EF Y NVH+LPK S LWILSG ++S VS SL
Sbjct: 433 KEKVRKHIYSDSEGEMHWSTDVYHAPEFTYGNVHLLPKASRLWILSGRPYRSSVVSFSLH 492
Query: 399 KDQDQMSTHSLPTAKRNTSNFLVSNNQVR---LCP---------------------DHCH 434
KDQDQ + +SL + ++ N ++N+QV+ L P HC+
Sbjct: 493 KDQDQTTGNSL-SFEQKIYNLSMTNDQVQNKFLDPYIKKSSKKEDRSPNYSELNGMSHCN 551
Query: 435 FMHPTISPDTSNLLAKKRRNRFIIPFLFRSIRERNNELMP---DISVEIPIDGIIHKNSI 491
++P S+LLAK+R+NR IIPF F+ +ER ELM IS+EIPI+GI +NSI
Sbjct: 552 HIYPA---KNSDLLAKRRKNRLIIPFQFQLSQEREKELMSLSNGISIEIPINGIFRRNSI 608
Query: 492 LAYFDDPQYRTQSSGIAKYKTIGIHSIFQKEDLIEYRGIREFKPKYQIKVDRFFFIPQEV 551
AYF+DP+YRT+SSGI KY+TI HS +KEDLIEYRG++EF+PKYQ+KVDRFFFI QEV
Sbjct: 609 FAYFNDPRYRTKSSGITKYETIETHSSVKKEDLIEYRGVKEFRPKYQMKVDRFFFISQEV 668
Query: 552 HILSESSSIMVRNNSIIGVNTPITLNKKSRVGGLVRVEKNKKKIELKIFSGDIHFPGEID 611
HIL SSSIMVRNNSIIGV+T ITLN +SRVGG+VRVE+ KKKIELKIFSGDI+FPGE D
Sbjct: 669 HILPGSSSIMVRNNSIIGVDTQITLNTRSRVGGVVRVERKKKKIELKIFSGDIYFPGETD 728
Query: 612 KISQHSAILIPPEMVKKKILRNQKKKTNWRYIQWITTTKKKYFVLVRPVILYDIADSINL 671
KIS+HS ILIPP K +N K NW Y+Q IT TKKKYFVLVRPV+ Y+I D INL
Sbjct: 729 KISRHSGILIPPGKTNYKESKNIK---NWLYVQRITPTKKKYFVLVRPVVTYEITDGINL 785
Query: 672 VKLFPQDLFKEWDNLELKVLNFILYGNGKSIRGILDTSIQLVRTCLVLNWNEDEKSSSIE 731
L PQDL +E N++L+V N+ILYGNGK RGI DTSIQLVRTCLVLNWN+D+K SSIE
Sbjct: 786 ATLLPQDLLQERGNVQLRVFNYILYGNGKVTRGIYDTSIQLVRTCLVLNWNQDKKDSSIE 845
Query: 732 EALASFVEVSTNGLIRYFLRIDLVKSHISYIRKRNDPSSSGLISYNESDRININPFFSIY 791
EA ASFVEV TNG+IRYFL+I L+ +SYI KRN+P L S + + N+NPFFSIY
Sbjct: 846 EARASFVEVRTNGIIRYFLKIGLMNRALSYIGKRNNPP---LFSDDGLEYTNMNPFFSIY 902
Query: 792 -KENIQQSLSQKHGTIRMLLNRNKENRSFIILSSSNCFQMGPFNNVKYHNGIKEEINQFK 850
K +QQ+ + GT+RML+ +NKE +SFIILSSSNCF+MGPF NG+K K
Sbjct: 903 SKPKLQQAFNPNQGTVRMLVGKNKECQSFIILSSSNCFRMGPFT----LNGVKYPKESIK 958
Query: 851 RNHKIPIKISLGPLGVAPQIANFFSFYHLITHNKISSIKKNLQLNKFKETFQVIK--YYL 908
++ I IK S GPLG NFF FYHLITHN+I + LQL+ K+T QV+K YYL
Sbjct: 959 KDRLILIKNSFGPLGTVLNFVNFFFFYHLITHNQI-LVNNYLQLDNLKQTCQVLKYQYYL 1017
Query: 909 MDENERIYKPDLYNNIILNPFHLNWDFIHPNYCEKTFPIISLGQFICENVCIVQTKNGPN 968
MDEN IY PD +NIILNPF+L+WDF+H N+C++T + LGQFICEN+CI KNG +
Sbjct: 1018 MDENGIIYNPDFCSNIILNPFNLHWDFLHYNFCDETSTKMRLGQFICENICI--KKNGLH 1075
Query: 969 LKSGQVITVQMDFVGIRLANPYLATPGATIHGHYGEMLYEGDILVTFIYEKSRSGDITQG 1028
LK GQ+I VQ D V IR A P LATPGAT+HGHYGE++YEGD LVTFIYEKSRSGDITQG
Sbjct: 1076 LKPGQIIIVQFDSVVIRSAKPCLATPGATVHGHYGEIIYEGDTLVTFIYEKSRSGDITQG 1135
Query: 1029 LPKVEQVLEVRSIDSISMNLEKRIDAWNERITGILGIPWSRKISMSRKLLQDNIS 1083
LPKVEQVLEVRS++SISMNLEKRI+ WNERI ILGIPW + + Q IS
Sbjct: 1136 LPKVEQVLEVRSVESISMNLEKRINGWNERIKKILGIPWGFLVGAELTIAQSRIS 1190
>dbj|BAA84375.1| RNA polymerase beta' subunit-2 [Arabidopsis thaliana]
gi|7525023|ref|NP_051049.1| RNA polymerase beta'' chain
[Arabidopsis thaliana] gi|6685905|sp|P56764|RPOC2_ARATH
DNA-directed RNA polymerase beta'' chain (PEP)
(Plastid-encoded RNA polymerase beta'' subunit) (RNA
polymerase beta'' subunit)
Length = 1376
Score = 1187 bits (3071), Expect = 0.0
Identities = 621/958 (64%), Positives = 734/958 (75%), Gaps = 50/958 (5%)
Query: 159 IYIGSRCIVVRNQDIGIGLINRFINFQTQPIFIRTPFTCRNTSWICRLCYGRSPIHGDLV 218
IYIGSRC+ RNQD+GIGL+NR I F TQ I IRTPFTCR+TSWICRLCYGRSP HGDLV
Sbjct: 255 IYIGSRCVAFRNQDLGIGLVNRLITFGTQSISIRTPFTCRSTSWICRLCYGRSPTHGDLV 314
Query: 219 ELGEAVGIIAGQSIGEPGTQLTLITFHTGGVFTGGTAEYVRSPSNGKIKFNENSAYPTRT 278
ELGEAVGIIAGQSIGEPGTQLTL TFHTGGVFTGGTAE+VR+P NGKIKFNE+ +PTRT
Sbjct: 315 ELGEAVGIIAGQSIGEPGTQLTLRTFHTGGVFTGGTAEHVRAPYNGKIKFNEDLVHPTRT 374
Query: 279 RHGHPAFLCYIDLYVTIESNDIMHNVIIPPKSFLLVQNDQYVKSEQIIAEIRAGTYTLNL 338
RHGHPAFLCYIDL V IES DI+H+V IPPKSFLLVQNDQYV+SEQ+IAEIR GTYT +
Sbjct: 375 RHGHPAFLCYIDLSVIIESEDIIHSVTIPPKSFLLVQNDQYVESEQVIAEIREGTYTFHF 434
Query: 339 KEKIRKHIFSDSEGEMHWSTNIYHVSEFAYSNVHILPKTSHLWILSGNSHKSDTVSLSLL 398
KE++RK+I+SDSEGEMHWST++ H EF YSNVH+LPKTSHLWILSG S S + S+
Sbjct: 435 KERVRKYIYSDSEGEMHWSTDVSHAPEFTYSNVHLLPKTSHLWILSGGSCGSSLIRFSIH 494
Query: 399 KDQDQMSTHSLPTAKRNTSNFLVSNNQV-------------------------RLCPDHC 433
KDQDQM+ L +++ S+ V+N+QV L H
Sbjct: 495 KDQDQMNIPFLSAERKSISSLSVNNDQVSQKFFSSDFADPKKLGIYDYSELNGNLGTSHY 554
Query: 434 HFMHPTISPDTSNLLAKKRRNRFIIPFLFRSIRERNNELMPD--ISVEIPIDGIIHKNSI 491
+ ++ I + S+LLAK+RRNRF+IP F+SI+E+ E +P ISVEIPI+GI +NSI
Sbjct: 555 NLIYSAIFHENSDLLAKRRRNRFLIP--FQSIQEQEKEFIPQSGISVEIPINGIFRRNSI 612
Query: 492 LAYFDDPQYRTQSSGIAKYKTIGIHSIFQKEDLIEYRGIREFKPKYQIKVDRFFFIPQEV 551
A+FDDP+YR +SSGI KY T+ SI QKED+IEYRG+++ K KY++KVDRFFFIP+EV
Sbjct: 613 FAFFDDPRYRRKSSGILKYGTLKADSIIQKEDMIEYRGVQKIKTKYEMKVDRFFFIPEEV 672
Query: 552 HILSESSSIMVRNNSIIGVNTPITLNKKSRVGGLVRVEKNKKKIELKIFSGDIHFPGEID 611
HIL ESS+IMV+N SIIGV+T +TLN +S+VGGL+RVEK KK+IELKIFSGDIHFP + D
Sbjct: 673 HILPESSAIMVQNYSIIGVDTRLTLNIRSQVGGLIRVEKKKKRIELKIFSGDIHFPDKTD 732
Query: 612 KISQHSAILIPPEMVKKKILRNQKKKTNWRYIQWITTTKKKYFVLVRPVILYDIADSINL 671
KIS+HS ILIPP KK + KK NW Y+Q IT TKKK+FVLVRPV Y+IADSINL
Sbjct: 733 KISRHSGILIPPGRGKKN-SKESKKFKNWIYVQRITPTKKKFFVLVRPVATYEIADSINL 791
Query: 672 VKLFPQDLFKEWDNLELKVLNFILYGNGKSIRGILDTSIQLVRTCLVLNWNEDEKSSSIE 731
LFPQDLF+E DN++L+V N+ILYGNGK RGI DTSIQLVRTCLVLNW +K+SS+E
Sbjct: 792 ATLFPQDLFREKDNIQLRVFNYILYGNGKPTRGISDTSIQLVRTCLVLNW---DKNSSLE 848
Query: 732 EALASFVEVSTNGLIRYFLRIDLVKSHISYIRKRNDPSSSGLISYNESDRININPFFSIY 791
E A FVEVST GLI+ F+RI LVKSHISYIRKRN+ SGLIS + ++NPF+SI
Sbjct: 849 EVRAFFVEVSTKGLIQDFIRIGLVKSHISYIRKRNNSPDSGLISAD-----HMNPFYSIS 903
Query: 792 KEN--IQQSLSQKHGTIRMLLNRNKENRSFIILSSSNCFQMGPFNNVKYHNGIKEEINQF 849
++ +QQSL Q HGTIRM LNRNKE++S +ILSSSNCF+MGPFN+VK+HN I + I
Sbjct: 904 PKSGILQQSLRQNHGTIRMFLNRNKESQSLLILSSSNCFRMGPFNHVKHHNVINQSI--- 960
Query: 850 KRNHKIPIKISLGPLGVAPQIANFFSFYHLITHNKISSIKKNLQLNKFKETFQVIKYYLM 909
K+N I IK S GPLG A I+NF+SF L+T+N+IS I K QL+ K FQ I YL+
Sbjct: 961 KKNTLITIKNSSGPLGTATPISNFYSFLPLLTYNQISLI-KYFQLDNLKYIFQKINSYLI 1019
Query: 910 DENERIYKPDLYNNIILNPFHLNWDFIHP----NYCEKTFPIISLGQFICENVCIVQTKN 965
DEN I D Y+N++LNPF LNW F+H NYCE+T IISLGQF CENVCI K
Sbjct: 1020 DENGIILNLDPYSNVVLNPFKLNWYFLHQNYHHNYCEETSTIISLGQFFCENVCI--AKK 1077
Query: 966 GPNLKSGQVITVQMDFVGIRLANPYLATPGATIHGHYGEMLYEGDILVTFIYEKSRSGDI 1025
P+LKSGQV+ VQ D IR A PYLATPGA +HGHY E+LYEGD LVTFIYEKSRSGDI
Sbjct: 1078 EPHLKSGQVLIVQRDSAVIRSAKPYLATPGAKVHGHYSEILYEGDTLVTFIYEKSRSGDI 1137
Query: 1026 TQGLPKVEQVLEVRSIDSISMNLEKRIDAWNERITGILGIPWSRKISMSRKLLQDNIS 1083
TQGLPKVEQVLEVRSIDSIS+NLEKRI WN+ IT ILGIPW I ++Q IS
Sbjct: 1138 TQGLPKVEQVLEVRSIDSISLNLEKRIKGWNKCITRILGIPWGFLIGAELTIVQSRIS 1195
>emb|CAB67153.1| RNA polymerase beta'' subunit [Oenothera elata subsp. hookeri]
gi|13518329|ref|NP_084688.1| RNA polymerase beta'' chain
[Oenothera elata subsp. hookeri]
gi|32699686|sp|Q9MTM3|RPOC2_OENHO DNA-directed RNA
polymerase beta'' chain (PEP) (Plastid-encoded RNA
polymerase beta'' subunit) (RNA polymerase beta''
subunit)
Length = 1386
Score = 1176 bits (3042), Expect = 0.0
Identities = 612/963 (63%), Positives = 736/963 (75%), Gaps = 52/963 (5%)
Query: 159 IYIGSRCIVVRNQDIGIGLINRFINFQTQPIFIRTPFTCRNTSWICRLCYGRSPIHGDLV 218
IYIGSRCI +RNQDIGIGL+NRFI F QPI IRTPFT R+ SWICRLCYGRSP HGDLV
Sbjct: 251 IYIGSRCIAIRNQDIGIGLVNRFITFGIQPISIRTPFTGRSPSWICRLCYGRSPTHGDLV 310
Query: 219 ELGEAVGIIAGQSIGEPGTQLTLITFHTGGVFTGGTAEYVRSPSNGKIKFNENSA--YPT 276
ELGEAVGIIAGQSIGEPGTQLTL TFHTGGVFTGGTAE+VR+PSNGKIKFN N A +P
Sbjct: 311 ELGEAVGIIAGQSIGEPGTQLTLRTFHTGGVFTGGTAEHVRAPSNGKIKFNFNEALVHPA 370
Query: 277 RTRHGHPAFLCYIDLYVTIESNDIMHNVIIPPKSFLLVQNDQYVKSEQIIAEIRAGTYTL 336
RTRHGHPA LC +DL VTIES DI+HN+ IPPKSFLLVQN+QYV+SEQ+IAEI AGT T
Sbjct: 371 RTRHGHPALLCSMDLDVTIESEDILHNLTIPPKSFLLVQNNQYVESEQVIAEICAGTSTF 430
Query: 337 NLKEKIRKHIFSDSEGEMHWSTNIYHVSEFAYSNVHILPKTSHLWILSGNSHKSDTVSLS 396
+ KE++RKHI+SDSEGEMHWST++YH EF YSNVH+LPKTSHLWILSG S +S S
Sbjct: 431 HFKERVRKHIYSDSEGEMHWSTDVYHAPEFTYSNVHLLPKTSHLWILSGGSCRSRGAPFS 490
Query: 397 LLKDQDQMSTHSLPTAKRNTSNFLVSNNQVR---------------------------LC 429
L KDQDQM+ S +R S+ +N+Q+R +C
Sbjct: 491 LHKDQDQMNPRSTERERRYLSSLSANNDQIRYKFFSSSFSGKKKDDRESWFISEMNRIIC 550
Query: 430 PDHCHFMHPTISPDTSNLLAKKRRNRFIIPFLFRSIRERNNELMPD--ISVEIPIDGIIH 487
HC+ ++P+I + S+LLAK+RRNR +IP +S +ER EL+P IS+E+PI+GI
Sbjct: 551 TLHCNLIYPSILRENSDLLAKRRRNRLVIPV--QSSQEREKELIPHSGISIELPINGIFR 608
Query: 488 KNSILAYFDDPQYRTQSSGIAKYKTIGIHSIFQKEDLIEYRGIREFKPKYQIKVDRFFFI 547
K SILA+FDDP+YRT+SSGI +Y+T+G+HSI +KE L++YRGI EFKPKYQ+ +DRFFFI
Sbjct: 609 KKSILAFFDDPRYRTKSSGITQYETMGMHSIVKKEGLVDYRGINEFKPKYQMTIDRFFFI 668
Query: 548 PQEVHILSESSSIMVRNNSIIGVNTPITLNKKSRVGGLVRVEKNKKKIELKIFSGDIHFP 607
P+EVHIL ESSSIMVRNNS+IGV+T I LN +SR GGLVRVE+ K+ I L+IFSG IHFP
Sbjct: 669 PEEVHILPESSSIMVRNNSLIGVDTRIALNTRSRAGGLVRVERKKRGIALQIFSGTIHFP 728
Query: 608 GEIDKISQHSAILIPPEMVKKKILRNQKKKTNWR---YIQWITTTKKKYFVLVRPVILYD 664
GE DKIS S ILIPP K RN K+ W+ Y+Q IT TKKK+FVL RPV+ Y+
Sbjct: 729 GETDKISWDSGILIPPGTGK----RNSKESKKWKNGIYVQRITPTKKKHFVLFRPVVTYE 784
Query: 665 IADSINLVKLFPQDLFKEWDNLELKVLNFILYGNGKSIRGILDTSIQLVRTCLVLNWNED 724
IAD +NL +LFP DL +E DN++L+++N+I+YGNGK IR I DTSIQLVRT +LNW++D
Sbjct: 785 IADGLNLARLFPPDLCQEKDNMQLQIVNYIVYGNGKPIREISDTSIQLVRTWFILNWDQD 844
Query: 725 EKSSSIEEALASFVEVSTNGLIRYFLRIDLVKSHISYIRKRNDPSSSGLISYNESDRINI 784
+KS+S E A ASFVEV GLIR FLRIDLVKS I RKRNDPS SGLIS N SD NI
Sbjct: 845 KKSASAEAAHASFVEVRAKGLIRDFLRIDLVKSPILDPRKRNDPSGSGLISDNVSDHTNI 904
Query: 785 NPFFSIYKENIQQSLSQKHGTIRMLLNRNKENRSFIILSSSNCFQMGPFNNVKYHNGIKE 844
NPF+S K ++QS Q HGTIR LLN+NKE S +ILS+SN F+MGPFN+VK N IKE
Sbjct: 905 NPFYS--KPKMKQSPRQNHGTIRTLLNQNKECPSLMILSASNWFRMGPFNDVKSQNVIKE 962
Query: 845 EINQFKRNHKIPIKISLGPLGVAPQIANFFSFYHLITHNKISSIKKNLQLNKFKETFQVI 904
I K++ I I+ S+GPLG A Q+ NF SFY+ ITHN++ + K LQ+ K+TFQV+
Sbjct: 963 SI---KKDAIIQIRNSIGPLGTALQVVNFDSFYYFITHNQV-LLTKYLQVENLKQTFQVL 1018
Query: 905 KYYLMDENERIYKPDLYNNIILNPFHLNWDFI-HPNY---CEKTFPIISLGQFICENVCI 960
+YYLMDE+ RIY PD +NI+LN F+L+W F+ H NY CE+ I+SLGQFICEN CI
Sbjct: 1019 QYYLMDESGRIYNPDPRSNIVLNSFNLSWYFLPHNNYENSCEEISTIVSLGQFICENGCI 1078
Query: 961 VQTKNGPNLKSGQVITVQMDFVGIRLANPYLATPGATIHGHYGEMLYEGDILVTFIYEKS 1020
KNGP L+SGQV+ VQ+D V IR A PYLATPGAT+HGHYGE+LY+GD +VTF+YEKS
Sbjct: 1079 --AKNGPYLRSGQVLIVQLDSVVIRSAKPYLATPGATVHGHYGEILYDGDTVVTFLYEKS 1136
Query: 1021 RSGDITQGLPKVEQVLEVRSIDSISMNLEKRIDAWNERITGILGIPWSRKISMSRKLLQD 1080
RSGDITQGLPKVEQVLEVRS+DSIS+NLEKR++ WNE IT ILG PW I ++Q
Sbjct: 1137 RSGDITQGLPKVEQVLEVRSVDSISVNLEKRVENWNEHITRILGFPWGFLIGAELTIVQS 1196
Query: 1081 NIS 1083
IS
Sbjct: 1197 RIS 1199
>gb|AAX58144.1| RNA polymerase beta II subunit [Lactuca sativa]
Length = 1386
Score = 1170 bits (3028), Expect = 0.0
Identities = 618/959 (64%), Positives = 731/959 (75%), Gaps = 52/959 (5%)
Query: 159 IYIGSRCIVVRNQDIGIGLINRFINFQTQPIFIRTPFTCRNTSWICRLCYGRSPIHGDLV 218
IYIGSRCI RNQDIG+GL++RFI F+ QPI IRTPFTCR+TSWIC+LCYGRSP H DLV
Sbjct: 257 IYIGSRCIATRNQDIGVGLVSRFITFRAQPISIRTPFTCRSTSWICQLCYGRSPAHDDLV 316
Query: 219 ELGEAVGIIAGQSIGEPGTQLTLITFHTGGVFTGGTAEYVRSPSNGKIKFNENSAYPTRT 278
ELGEAVGIIAGQSIGEPGTQLTL TFHTGGVFTGGTAE+VR+PSNGKIKFNE+ +PTRT
Sbjct: 317 ELGEAVGIIAGQSIGEPGTQLTLRTFHTGGVFTGGTAEHVRAPSNGKIKFNEDLVHPTRT 376
Query: 279 RHGHPAFLCYIDLYVTIESNDIMHNVIIPPKSFLLVQNDQYVKSEQIIAEIRAGTYTLNL 338
RHGHPAFLC DLYVTIES DI+HNV IPPKSFLLVQNDQYV+SEQ+IAEIRA T TLNL
Sbjct: 377 RHGHPAFLCSRDLYVTIESEDIIHNVCIPPKSFLLVQNDQYVESEQVIAEIRARTSTLNL 436
Query: 339 KEKIRKHIFSDSEGEMHWSTNIYHVSEFAYSNVHILPKTSHLWILSGNSHKSDTVSLSLL 398
KEK+RKHI+SDSEGEMHW+T++YH EF Y N+H+LPKTSHLWIL G + S+
Sbjct: 437 KEKVRKHIYSDSEGEMHWNTDVYHAPEFTYGNIHLLPKTSHLWILLGEPWRYSLGPCSIH 496
Query: 399 KDQDQMSTHSLPTAKRNTSNFLVSNNQVR---------------------------LCPD 431
KDQDQM+ +SL R +N V+NNQVR C D
Sbjct: 497 KDQDQMNAYSLSVKPRYIANPSVTNNQVRHKFFSSYFSGKNQKGDRIPDCSELNRMTCTD 556
Query: 432 HCHFMHPTISPDTSNLLAKKRRNRFIIPFLFRSIRERNNELMPD--ISVEIPIDGIIHKN 489
H + +P I S+LLAK+RRNRFIIP SI+E N+L+P IS+EIP +GI+ +N
Sbjct: 557 HSNLRYPAILDGNSDLLAKRRRNRFIIP--LESIQEGENQLIPSSGISMEIPRNGILRRN 614
Query: 490 SILAYFDDPQYRTQSSGIAKYKTIGIHSIFQKEDLIEYRGIREFKPKYQIKVDRFFFIPQ 549
SILAYFDDP+Y +SSG+ KY+T ++SI +E+LIEYRG++ F PKYQ +V+ FFFIP
Sbjct: 615 SILAYFDDPRYIRKSSGLTKYETRELNSIVNEENLIEYRGVKVFWPKYQKEVNPFFFIPV 674
Query: 550 EVHILSESSSIMVRNNSIIGVNTPITLNKKSRVGGLVRVEKNKKKIELKIFSGDIHFPGE 609
EVHILSESSSIMVR+NSIIG +T IT N++SRVGGLVRV+K +K++L IFSGDIHFPG+
Sbjct: 675 EVHILSESSSIMVRHNSIIGADTQITFNRRSRVGGLVRVKKKAEKMKLIIFSGDIHFPGK 734
Query: 610 IDKISQHSAILIPPEMVKKKILRNQKKKTNWRYIQWITTTK--KKYFVLVRPVILYDIAD 667
+K + LIPP K + KK NW YIQ + ++ KKYFVLV+PV+ Y D
Sbjct: 735 TNKAFR----LIPPGGGKPN-SKEYKKLKNWLYIQRMKLSRYEKKYFVLVQPVVPYKKTD 789
Query: 668 SINLVKLFPQDLFKEWDNLELKVLNFILYGNGKSIRGILDTSIQLVRTCLVLNWNEDEKS 727
INL +LFP DL +E DNL+L+V+N+ILY + I I DTSIQLVRT LVLNW++D+K
Sbjct: 790 GINLGRLFPPDLLQESDNLQLRVVNYILYYD--PILEIWDTSIQLVRTSLVLNWDQDKK- 846
Query: 728 SSIEEALASFVEVSTNGLIRYFLRIDLVKSHISYIRKRNDPSSSGLISYNESDRININPF 787
IE+A ASFVE+ TNGL+RYFLRIDL KS ISY KRND S SGLIS N SDR N+NPF
Sbjct: 847 --IEKACASFVEIRTNGLLRYFLRIDLAKSPISYTGKRNDLSGSGLISENGSDRANVNPF 904
Query: 788 FSIY---KENIQQSLSQKHGTIRMLLNRNKENRSFIILSSSNCFQMGPFNNVKYHNGIKE 844
SIY K I++SL+ GTI LLNRNKE++S IILSSSNCF++GPFN+VK N IKE
Sbjct: 905 SSIYSYSKSRIKESLNPNQGTIHTLLNRNKESQSLIILSSSNCFRIGPFNDVKSPNVIKE 964
Query: 845 EINQFKRNHKIPIKISLGPLGVAPQIANFFSFYHLITHNKISSIKKNLQLNKFKETFQVI 904
I K+N IPI+ SLGPLG I NF F HLITHN+I + LQL+ FK+ FQ++
Sbjct: 965 SI---KKNPLIPIRNSLGPLGTGFPIYNFDLFSHLITHNQI-LVTNYLQLDNFKQIFQIL 1020
Query: 905 KYYLMDENERIYKPDLYNNIILNPFHLNWDFIHPNYCEKTFPIISLGQFICENVCIVQTK 964
KYYL+DEN +IY P +NIILNPFHLNW F+H NYCE+T PI+SLGQF+CENVCI K
Sbjct: 1021 KYYLLDENGQIYNPYSCSNIILNPFHLNWYFLHYNYCEETSPIVSLGQFLCENVCI--AK 1078
Query: 965 NGPNLKSGQVITVQMDFVGIRLANPYLATPGATIHGHYGEMLYEGDILVTFIYEKSRSGD 1024
GP+LKSGQV+ VQ+D V IR A PYLATPGAT+HGHYGE+LYEGD LVTFIYEKSRSGD
Sbjct: 1079 KGPHLKSGQVLIVQVDSVVIRSAKPYLATPGATVHGHYGEILYEGDTLVTFIYEKSRSGD 1138
Query: 1025 ITQGLPKVEQVLEVRSIDSISMNLEKRIDAWNERITGILGIPWSRKISMSRKLLQDNIS 1083
ITQGLPKVEQVLEVRSIDSISMNLEKRI+ WN+ IT ILGIPW+ I ++Q IS
Sbjct: 1139 ITQGLPKVEQVLEVRSIDSISMNLEKRIEGWNKSITRILGIPWAFLIGAELTIVQSRIS 1197
>emb|CAB48415.2| RNA polymerase A beta prime prime subunit [Sinapis alba]
gi|12229937|sp|Q9THV5|RPOC2_SINAL DNA-directed RNA
polymerase beta'' chain (PEP) (Plastid-encoded RNA
polymerase beta'' subunit) (RNA polymerase beta''
subunit)
Length = 1384
Score = 1151 bits (2978), Expect = 0.0
Identities = 609/957 (63%), Positives = 714/957 (73%), Gaps = 44/957 (4%)
Query: 159 IYIGSRCIVVRNQDIGIGLINRFINFQTQPIFIRTPFTCRNTSWICRLCYGRSPIHGDLV 218
IYIGSRC+ RNQD+GIGL+NRFI F TQPI IRTPFTCR+TSWICRLCYGRSP HGDLV
Sbjct: 259 IYIGSRCVAFRNQDLGIGLVNRFITFGTQPISIRTPFTCRSTSWICRLCYGRSPTHGDLV 318
Query: 219 ELGEAVGIIAGQSIGEPGTQLTLITFHTGGVFTGGTAEYVRSPSNGKIKFNENSAYPTRT 278
ELGEAVGIIAGQSIGEPGTQLTL TFHTGGVFTGGTAE+VR+P NGKIKFNE+ + TRT
Sbjct: 319 ELGEAVGIIAGQSIGEPGTQLTLRTFHTGGVFTGGTAEHVRAPYNGKIKFNEDLVHSTRT 378
Query: 279 RHGHPAFLCYIDLYVTIESNDIMHNVIIPPKSFLLVQNDQYVKSEQIIAEIRAGTYTLNL 338
RHGHPAFLCYIDL V IES DI+H+V IPPKSFLLVQNDQYV+SEQ+IAEIR GTYT
Sbjct: 379 RHGHPAFLCYIDLSVIIESEDIIHSVTIPPKSFLLVQNDQYVESEQVIAEIREGTYTFQF 438
Query: 339 KEKIRKHIFSDSEGEMHWSTNIYHVSEFAYSNVHILPKTSHLWILSGNSHKSDTVSLSLL 398
KE++RK+I+SDSEG MHWST++ H EF YSNVH+LPKTSHLWILSG S S + S+
Sbjct: 439 KERVRKYIYSDSEGGMHWSTDVSHAPEFTYSNVHLLPKTSHLWILSGGSCGSSLILFSIH 498
Query: 399 KDQDQMSTHSLPTAKRNTSNFLVSNNQVR-------------LCPD-----------HCH 434
KDQDQM+ L +++ S+ V+N+QV L P+ H +
Sbjct: 499 KDQDQMNIPFLSVERKSISSLSVNNDQVSQKFFSSDFSDKKILIPNYSELNGIVGTSHYN 558
Query: 435 FMHPTISPDTSNLLAKKRRNRFIIPFLFRSIRERNNELMP--DISVEIPIDGIIHKNSIL 492
F++ I + S+LLAK+RRNRF+IPF +E+ E +P ISVEIPI+GI +NSI
Sbjct: 559 FIYSAIFHENSDLLAKRRRNRFLIPFQSIQEQEQEKEFIPHSGISVEIPINGIFRRNSIF 618
Query: 493 AYFDDPQYRTQSSGIAKYKTIGIHSIFQKEDLIEYRGIREFKPKYQIKVDRFFFIPQEVH 552
A+FDDP+YR +SSGI KY T+ SI QKED+IEYRG+++FK KY++KVDRFFFIP+EVH
Sbjct: 619 AFFDDPRYRRKSSGILKYGTLKADSIIQKEDMIEYRGVQKFKTKYEMKVDRFFFIPEEVH 678
Query: 553 ILSESSSIMVRNNSIIGVNTPITLNKKSRVGGLVRVEKNKKKIELKIFSGDIHFPGEIDK 612
IL ESS+IMV N SIIGV+T ITLN +S+VGGL+RVE+ KK+IELKIFSGDIHFP + DK
Sbjct: 679 ILPESSAIMVENYSIIGVDTRITLNIRSQVGGLIRVERKKKRIELKIFSGDIHFPDKTDK 738
Query: 613 ISQHSAILIPPEMVKKKILRNQKKKTNWRYIQWITTTKKKYFVLVRPVILYDIADSINLV 672
IS+HS ILIPP K + K NW Y+Q IT TKKK+FVLVRPV Y+IADSINL
Sbjct: 739 ISRHSGILIPPGRGKTN-SKESKIVKNWIYVQRITPTKKKFFVLVRPVATYEIADSINLA 797
Query: 673 KLFPQDLFKEWDNLELKVLNFILYGNGKSIRGILDTSIQLVRTCLVLNWNEDEKSSSIEE 732
LFP+DLF+E DN++L+V N+ILYGNGK RGI DTSIQLVRTCLVLNW++D K+SS+EE
Sbjct: 798 TLFPKDLFREKDNIQLRVFNYILYGNGKPTRGISDTSIQLVRTCLVLNWDQDNKNSSLEE 857
Query: 733 ALASFVEVSTNGLIRYFLRIDLVKSHISYIRKRNDPSSSGLISYNESDRININPFFSIYK 792
A FVEV+T GLIR F+RI LVKSHISYIRKRN+PSS E ++NPF+SI
Sbjct: 858 VRAFFVEVNTKGLIRDFIRIGLVKSHISYIRKRNNPSS----EKKEGSDHSMNPFYSISP 913
Query: 793 EN--IQQSLSQKHGTIRMLLNRNKENRSFIILSSSNCFQMGPFNNVKYHNGIKEEINQFK 850
+ + QSL Q HGTIRM LNRN+ N +ILSSSNCF++GPFN+VKYHN I + I +
Sbjct: 914 KAGILHQSLRQNHGTIRMFLNRNR-NPILLILSSSNCFRIGPFNHVKYHNVINQSIKKKT 972
Query: 851 RNHKIPIKISLGPLGVAPQIANFFSFYHLITHNKISSIKKNLQLNKFKETFQVIKYYLMD 910
N+ IK P G A QI F F N+IS I K L L F VI YL+D
Sbjct: 973 SNY---IKNCRAPYGTAIQILIFIHFAFTKLINQISCI-KYLHLQTSNVFFPVIHSYLID 1028
Query: 911 ENERIYKPDLYNNIILNPFHLNWDFIHP----NYCEKTFPIISLGQFICENVCIVQTKNG 966
EN RI+ D Y+N++LNPF LNW F+H NYCE+T IISLGQF CENVCI K
Sbjct: 1029 ENGRIFNLDPYSNLVLNPFKLNWYFLHQNYNNNYCEETSTIISLGQFFCENVCI--AKKE 1086
Query: 967 PNLKSGQVITVQMDFVGIRLANPYLATPGATIHGHYGEMLYEGDILVTFIYEKSRSGDIT 1026
P LKSGQV+ VQ D V IR A PYLATPGA +HGHY E+LYEGD LVTFIYEKSRSGDIT
Sbjct: 1087 PYLKSGQVLIVQRDSVVIRSAKPYLATPGAKVHGHYREILYEGDTLVTFIYEKSRSGDIT 1146
Query: 1027 QGLPKVEQVLEVRSIDSISMNLEKRIDAWNERITGILGIPWSRKISMSRKLLQDNIS 1083
QGLPKVEQVLEVRSIDSIS+NLEKRI WN IT ILGIPW I ++Q IS
Sbjct: 1147 QGLPKVEQVLEVRSIDSISLNLEKRIKGWNRCITRILGIPWGFLIGAELTIVQSRIS 1203
>emb|CAD45097.2| RNA polymerase beta' subunit-2 [Amborella trichopoda]
gi|34500904|ref|NP_904089.1| RNA polymerase beta'
subunit-2 [Amborella trichopoda]
gi|41017896|sp|P60289|RPOC2_AMBTC DNA-directed RNA
polymerase beta'' chain (PEP) (Plastid-encoded RNA
polymerase beta'' subunit) (RNA polymerase beta''
subunit)
Length = 1373
Score = 1145 bits (2963), Expect = 0.0
Identities = 609/953 (63%), Positives = 717/953 (74%), Gaps = 45/953 (4%)
Query: 159 IYIGSRCIVVRNQDIGIGLINRFINFQTQPIFIRTPFTCRNTSWICRLCYGRSPIHGDLV 218
+Y+G RCI RNQDIGIGL+NRFI + QPI+IR+PFTCR+TSWIC+LCYGRS HG+LV
Sbjct: 258 VYMGLRCIATRNQDIGIGLVNRFITSRAQPIYIRSPFTCRSTSWICQLCYGRSTTHGNLV 317
Query: 219 ELGEAVGIIAGQSIGEPGTQLTLITFHTGGVFTGGTAEYVRSPSNGKIKFNENSAYPTRT 278
ELGEAVGIIAGQSIGEPGTQLTL TFHTGGVFTGG AE+VR+PSNGKIKFNE+ +PTRT
Sbjct: 318 ELGEAVGIIAGQSIGEPGTQLTLRTFHTGGVFTGGIAEHVRAPSNGKIKFNEDLVHPTRT 377
Query: 279 RHGHPAFLCYIDLYVTIESNDIMHNVIIPPKSFLLVQNDQYVKSEQIIAEIRAGTYTLNL 338
RHGHPAFLC+IDL+VTIES DI+H V IPPKSFLLVQNDQYV+SEQ+IAEIRAGT TL
Sbjct: 378 RHGHPAFLCHIDLHVTIESQDIIHKVNIPPKSFLLVQNDQYVESEQVIAEIRAGTSTL-- 435
Query: 339 KEKIRKHIFSDSEGEMHWSTNIYHVSEFAYSNVHILPKTSHLWILSGNSHKSDTVSLSLL 398
KE+++KHI+SDSEGEMHWST++YH E+ + NVH+LPKTSHLW+LSG+ +S V L
Sbjct: 436 KERVQKHIYSDSEGEMHWSTDVYHTPEYTHGNVHLLPKTSHLWVLSGSPCRSSIVPFPLH 495
Query: 399 KDQDQMSTHSLPTAKRNTSNFLVSNNQVR----------------------LCPDHCHFM 436
KDQDQM+ SL +R S+ ++N++VR + + +
Sbjct: 496 KDQDQMNVQSLYVEERYISDLSMNNDRVRHKLFGWDQKRGRVSYYSGPDRIISNRNWDSI 555
Query: 437 HPTISPDTSNLLAKKRRNRFIIPFLFRSIRERNNELMPD-ISVEIPIDGIIHKNSILAYF 495
+P I + S+LLAK+RRNRFIIPF + +E+ EL P I ++IPI GI+ +NSILAYF
Sbjct: 556 YPLILHENSDLLAKRRRNRFIIPFQYD--QEQEKELRPPGIVIKIPIKGILRRNSILAYF 613
Query: 496 DDPQYRTQSSGIAKYKTIGIHSIFQKEDLIEYRGIREFKPKYQI--KVDRFFFIPQEVHI 553
DDP+YR SSGIAKY TI + SI +KEDLIEYR REF PKYQI KV+RFFFIP+EVHI
Sbjct: 614 DDPRYRRSSSGIAKYGTIEVDSIIKKEDLIEYRKTREFGPKYQIQIKVNRFFFIPEEVHI 673
Query: 554 LSESSSIMVRNNSIIGVNTPITLNKKSRVGGLVRVEKNKKKIELKIFSGDIHFPGEIDKI 613
L SSSIMVRNNSIIGV+T ITLN +S+VGGLVRVEK KK+IELKI SGDIHFPGE D I
Sbjct: 674 LPRSSSIMVRNNSIIGVDTRITLNIRSQVGGLVRVEKKKKRIELKISSGDIHFPGETDNI 733
Query: 614 SQHSAILIPPEMVKKKILRNQKKKTNWRYIQWITTTKKKYFVLVRPVILYDIADSINLVK 673
+++S ILIPP VK + K NW Y+Q IT KKKYFV VRPV+ Y+IAD INL
Sbjct: 734 ARYSGILIPPGRVKN----TESKFKNWIYVQRITPIKKKYFVSVRPVVTYEIADGINLAT 789
Query: 674 LFPQDLFKEWDNLELKVLNFILYGNGKSIRGILDTSIQLVRTCLVLNWNEDEKSS-SIEE 732
FPQDL +E +NL+L+V+N+ILYG+GK IRGI TSIQLVRTCLVLNW++D S EE
Sbjct: 790 FFPQDLLQEKNNLQLRVVNYILYGDGKPIRGIFHTSIQLVRTCLVLNWDQDRAGSIEEEE 849
Query: 733 ALASFVEVSTNGLIRYFLRIDLVKSHISYIRKRNDPSSSGLISYNESDRININPFFSIYK 792
A S EV N LIR F+RIDLVKS IS K ND + SGLI N SDRIN NPFFS K
Sbjct: 850 AYTSLAEVRVNDLIRNFIRIDLVKSPISSTGKENDMAGSGLIPNNGSDRINTNPFFSKAK 909
Query: 793 ENIQQSLSQKHGTIRMLLNRNKENR--SFIILSSSNCFQMGPFNNVKYHNGIKEEINQFK 850
QSLSQ GTIR LLNRNKE + S ++LSSSNC ++GP N KYHN KE I +
Sbjct: 910 T---QSLSQHQGTIRTLLNRNKEGQGESLMVLSSSNCSRIGPLNGSKYHNVTKESIQE-- 964
Query: 851 RNHKIPIKISLGPLGVAPQIANFFSFYHLITHNKISSIKKNLQLNKFKETFQVIKYYLMD 910
+ I I+ SLGPLG P I NF S YH ITHN+I K L + +ETF V K Y MD
Sbjct: 965 -DPMISIRNSLGPLGTVPNILNFSSSYHSITHNEIL-FNKYLLPDNSRETFLVPKSYFMD 1022
Query: 911 ENERIYKPDLYNNIILNPFHLNWDFIHPNYCEKTFPIISLGQFICENVCIVQTKNGPNLK 970
EN RIY D +NIIL PF+LNW F+H +Y E T IISLGQF+CEN+CI +K+GP +K
Sbjct: 1023 ENRRIYNLDPCSNIILTPFNLNWCFLHHDYWEDTSTIISLGQFLCENICI--SKDGPCVK 1080
Query: 971 SGQVITVQMDFVGIRLANPYLATPGATIHGHYGEMLYEGDILVTFIYEKSRSGDITQGLP 1030
SGQ+I V +D + IRLA +LAT GAT+HGHYGE+LYEGD LVTFIYEKSRSGDITQGLP
Sbjct: 1081 SGQIIIVHVDSLVIRLAKYHLATRGATVHGHYGEILYEGDTLVTFIYEKSRSGDITQGLP 1140
Query: 1031 KVEQVLEVRSIDSISMNLEKRIDAWNERITGILGIPWSRKISMSRKLLQDNIS 1083
KVEQVLEVRSIDSISMNLEKR++ WNERITG LGIPW IS ++Q IS
Sbjct: 1141 KVEQVLEVRSIDSISMNLEKRVEGWNERITGFLGIPWEFFISAQLTIVQSRIS 1193
>emb|CAF28583.1| RNA polymerase beta' subunit-2 [Nymphaea alba]
gi|50346772|ref|YP_053145.1| RNA polymerase beta'
subunit-2 [Nymphaea alba]
Length = 1401
Score = 1100 bits (2845), Expect = 0.0
Identities = 600/962 (62%), Positives = 702/962 (72%), Gaps = 54/962 (5%)
Query: 159 IYIGSRCIVVRNQDIGIGLINRFINFQTQPIFIRTPFTCRNTSWICRLCYGRSPIHGDLV 218
+Y+G RCI RNQDIGIGL+NRF+ + QPI+IRTPFTCR+ SWICRLCYGRSP HGDLV
Sbjct: 256 VYLGLRCIATRNQDIGIGLVNRFMTSRAQPIYIRTPFTCRSASWICRLCYGRSPTHGDLV 315
Query: 219 ELGEAVGIIAGQSIGEPGTQLTLITFHTGGVFTGGTAEYVRSPSNGKIKFNENSAYPTRT 278
ELGEAVGIIAGQSIGEPGTQLTL TFHTGGVFTGGTAE+VR+PSNGKIKFNE+ +PTRT
Sbjct: 316 ELGEAVGIIAGQSIGEPGTQLTLRTFHTGGVFTGGTAEHVRAPSNGKIKFNEDLVHPTRT 375
Query: 279 RHGHPAFLCYIDLYVTIESNDIMHNVIIPPKSFLLVQNDQYVKSEQIIAEIRAGTYTLNL 338
RHGHPAFLCY+DLYVTIES DI+H+V IPPKSFLLVQNDQYV+SEQ+IAEIRAGT T +
Sbjct: 376 RHGHPAFLCYVDLYVTIESQDIIHSVNIPPKSFLLVQNDQYVESEQVIAEIRAGTSTFHF 435
Query: 339 KEKIRKHIFSDSEGEMHWSTNIYHVSEFAYSNVHILPKTSHLWILSGNSHKSDTVSLSLL 398
KE++RKHI+SDSEGEMHWST +YH E+ + NVH LPKTSHLWILSG KS V SL
Sbjct: 436 KERVRKHIYSDSEGEMHWSTGVYHAPEYTHGNVHFLPKTSHLWILSGGPCKSSLVPFSLH 495
Query: 399 KDQDQMSTHSLPTAKRNTSNFLVSNNQV--------------RLCPDHC----------- 433
KDQDQM+ SL +R+ S+F V+NN+V R D+
Sbjct: 496 KDQDQMNVQSLSVQERSISDFSVNNNRVKHKLFGSDPLARKGRRISDYAAGSERVISNGD 555
Query: 434 -HFMHPTISPDTSNLLAKKRRNRFIIPFLFRSIRERNNELMP----DISVEIPIDGIIHK 488
F++P I + S LLAK+RRNRFIIPF + E EL P I+VEIP +GI+ +
Sbjct: 556 GDFIYPAILRENSYLLAKRRRNRFIIPFQYDP--EWEKELTPHSSTSITVEIPANGILRR 613
Query: 489 NSILAYFDDPQYRTQSSGIAKYKTIGIHSIFQKEDLIEYRGIREFKPKYQIKVDRFFFIP 548
NSILAYFDDP+YR SSGI KY I + SI +KE L+EYR +E +PKYQ+KVDRFF IP
Sbjct: 614 NSILAYFDDPRYRRSSSGITKYGIIEVDSIVKKEGLVEYRRPKESRPKYQMKVDRFFVIP 673
Query: 549 QEVHILSESSSIMVRNNSIIGVNTPITLNKKSRVGGLVRVEKNKKKIELKIFSGDIHFPG 608
+EVHIL SSSIMVRNNSIIGV+T IT N +S++GGLVR+EK KKKIELKIFSG IHFPG
Sbjct: 674 EEVHILPGSSSIMVRNNSIIGVDTRITFNTRSQIGGLVRIEK-KKKIELKIFSGGIHFPG 732
Query: 609 EIDKISQHSAILIPPEMVKKKILRNQKKK----TNWRYIQWITTTKKKYFVLVRPVILYD 664
E DKIS+H ILIPP +KK+ + K K NW Y+Q IT KKKYFV VRPV+ Y+
Sbjct: 733 ETDKISRHIGILIPPG-ARKKMDKGSKGKNWEGNNWVYVQRITPIKKKYFVSVRPVVTYE 791
Query: 665 IADSINLVKLFPQDLFKEWDNLELKVLNFILYGNGKSIRGILDTSIQLVRTCLVLNWNED 724
IAD INLV LFP D+ +E DNL L+V+N+ILYG+GK IRGI TSIQLVRTCLVLNW++D
Sbjct: 792 IADGINLVTLFPGDMLQEKDNLRLQVVNYILYGDGKPIRGISHTSIQLVRTCLVLNWDQD 851
Query: 725 EKSSSIEEALASFVEVSTNGLIRYFLRIDLVKSHISYIRKRNDPSSSGLISYNESDRINI 784
+K SIE+ AS EV N LIRYF+RIDLVKS I Y KRND S S +I S N
Sbjct: 852 KK-GSIEKVQASSAEVRANDLIRYFIRIDLVKSPILYTGKRNDRSGS-VIPDTGSYCANT 909
Query: 785 NPFFSIYKENIQQSLSQKHGTIRMLLNRNKENRSFIILSSSNCFQMGPFNNVKYHNGIKE 844
N F S K +SLSQ GT+R LNRNKE +S I+ SSSNC ++ N KYHN KE
Sbjct: 910 NLFSSKVK---IKSLSQHQGTVRTFLNRNKEGQSLIVFSSSNCSRI---NVSKYHNVTKE 963
Query: 845 EINQFKRNHKIPIKISLGPLGVAPQIANFFSFYHLITHNKISSIKKNLQLNKF-KETFQV 903
I + K + IPI LGPLG P+I NF YH ITHN+I K + NK K+TFQ+
Sbjct: 964 SIKE-KEDTPIPILNLLGPLGTVPKIHNFSPSYHSITHNEILLNKYLILDNKNPKQTFQL 1022
Query: 904 IKYYLMDENERIYKPDLYNNIILNPFHLNWDFIHPNYCE--KTFPIISLGQFICENVCIV 961
+KYYL+DEN RI + ++II N F F+ +YCE T IISLGQFICENVC+
Sbjct: 1023 LKYYLVDENGRISNANPCSDIIFNLF--GSCFLPHDYCEGTSTTRIISLGQFICENVCL- 1079
Query: 962 QTKNGPNLKSGQVITVQMDFVGIRLANPYLATPGATIHGHYGEMLYEGDILVTFIYEKSR 1021
+K+G +KSGQVI V +D IR A PYLAT GAT+HG YGE+ YEGD LVTFIYEKSR
Sbjct: 1080 -SKHGTRIKSGQVIMVYLDSFIIRSAKPYLATRGATVHGDYGEIFYEGDTLVTFIYEKSR 1138
Query: 1022 SGDITQGLPKVEQVLEVRSIDSISMNLEKRIDAWNERITGILGIPWSRKISMSRKLLQDN 1081
SGDIT GLPKVEQVLEVRSIDSISMNLEKR++ WNE ITGILGIPW I + Q
Sbjct: 1139 SGDITHGLPKVEQVLEVRSIDSISMNLEKRVEGWNEHITGILGIPWGFLIGAELTIAQSR 1198
Query: 1082 IS 1083
+S
Sbjct: 1199 VS 1200
>pir||A05028 rpoC protein homolog - common tobacco chloroplast
Length = 862
Score = 852 bits (2202), Expect = 0.0
Identities = 442/663 (66%), Positives = 525/663 (78%), Gaps = 16/663 (2%)
Query: 428 LCPDHCHFMHPTISPDTSNLLAKKRRNRFIIPFLFRSIRERNNELMP--DISVEIPIDGI 485
+C + ++ I + S+LL+K+RRN+FIIP SI+E NELMP IS+EIP++GI
Sbjct: 21 ICAGQYNLVYSPILHENSDLLSKRRRNKFIIPL--HSIQELENELMPCSGISIEIPVNGI 78
Query: 486 IHKNSILAYFDDPQYRTQSSGIAKYKTIGIHSIFQKEDLIEYRGIREFKPKYQIKVDRFF 545
+NSILAYFDDP+YR +SSGI KY T+ HS+ +KEDL+EYRG++EF+PKYQ+KVDRFF
Sbjct: 79 FRRNSILAYFDDPRYRRKSSGIIKYGTVETHSVIKKEDLLEYRGVKEFRPKYQMKVDRFF 138
Query: 546 FIPQEVHILSESSSIMVRNNSIIGVNTPITLNKKSRVGGLVRVEKNKKKIELKIFSGDIH 605
FIP+EVHIL SSSIMVRNNSI+GV+T ITLN +SRVGGLVRVE+ KK+IELKIFSGDIH
Sbjct: 139 FIPEEVHILPGSSSIMVRNNSIVGVDTQITLNLRSRVGGLVRVERKKKRIELKIFSGDIH 198
Query: 606 FPGEIDKISQHSAILIPPEMVKKKILRNQKKKTNWRYIQWITTTKKKYFVLVRPVILYDI 665
FPGE DKIS+H+ +LIPP K+ + KK NW Y+Q IT +KKK+FVLVRPV+ Y+I
Sbjct: 199 FPGETDKISRHTGVLIPPGTGKRN-SKESKKVKNWIYVQRITPSKKKFFVLVRPVVTYEI 257
Query: 666 ADSINLVKLFPQDLFKEWDNLELKVLNFILYGNGKSIRGILDTSIQLVRTCLVLNWNEDE 725
D INL LFP D +E DN++L+++N+ILYGNGK IRGI DTSIQLVRTCLVLNWN+D+
Sbjct: 258 TDGINLATLFPPDPLQERDNVQLRIVNYILYGNGKPIRGISDTSIQLVRTCLVLNWNQDK 317
Query: 726 KSSSIEEALASFVEVSTNGLIRYFLRIDLVKSHISYIRKRNDPSSSGLISYNESDRININ 785
KSSS EEA ASFVE+ TNGLIR+FLRI+LVKS ISYI KRNDPS SGL+S N SD NIN
Sbjct: 318 KSSSCEEARASFVEIRTNGLIRHFLRINLVKSPISYIGKRNDPSGSGLLSDNGSDCTNIN 377
Query: 786 PFFSIY---KENIQQSLSQKHGTIRMLLNRNKENRSFIILSSSNCFQMGPFNNVKYHNGI 842
PF SIY K IQQS++Q GTI LLNRNKE +S IILS++NC +MGPF +VKYH+ I
Sbjct: 378 PFSSIYSYSKAKIQQSINQPQGTIHTLLNRNKECQSLIILSAANCSRMGPFKDVKYHSVI 437
Query: 843 KEEINQFKRNHKIPIKISLGPLGVAPQIANFFSFYHLITHNKISSIKKNLQLNKFKETFQ 902
K+ I K++ IPI+ SLGPLG + I NF+S YHLITHN+I + LQL+ K+TFQ
Sbjct: 438 KKSI---KKDPLIPIRNSLGPLGTSLPIENFYSSYHLITHNQI-LVTNYLQLDNLKQTFQ 493
Query: 903 VI--KYYLMDENERIYKPDLYNNIILNPFHLNWDFIHPNYCEKTFPIISLGQFICENVCI 960
VI KYYLMDEN +I+ PD NIILNPF+LNW F+H NYCE+T IISLGQFICENVCI
Sbjct: 494 VIKFKYYLMDENGKIFNPDPCRNIILNPFNLNWYFLHHNYCEETSKIISLGQFICENVCI 553
Query: 961 VQTKNGPNLKSGQVITVQMDFVGIRLANPYLATPGATIHGHYGEMLYEGDILVTFIYEKS 1020
KNGP LKSGQVI VQ+D + IR A PYLATPGAT+HGHYGE LYEGD LVTFIYEKS
Sbjct: 554 --AKNGPPLKSGQVILVQVDSIVIRSAKPYLATPGATVHGHYGETLYEGDTLVTFIYEKS 611
Query: 1021 RSGDITQGLPKVEQVLEVRSIDSISMNLEKRIDAWNERITGILGIPWSRKISMSRKLLQD 1080
RSGDITQGLPKVEQVLEVRS+DSISMNLEKRI+ WN+ IT ILGIPW I + Q
Sbjct: 612 RSGDITQGLPKVEQVLEVRSVDSISMNLEKRIEGWNKCITRILGIPWGFLIGAELTIAQS 671
Query: 1081 NIS 1083
IS
Sbjct: 672 RIS 674
>emb|CAA28063.1| rpoC2 [Marchantia polymorpha] gi|66985|pir||RNLVC2 DNA-directed RNA
polymerase (EC 2.7.7.6) beta'-2 chain - liverwort
(Marchantia polymorpha) chloroplast
gi|11466681|ref|NP_039277.1| RNA polymerase beta'' chain
[Marchantia polymorpha] gi|133444|sp|P06274|RPOC2_MARPO
DNA-directed RNA polymerase beta'' chain (PEP)
(Plastid-encoded RNA polymerase beta'' subunit) (RNA
polymerase beta'' subunit)
Length = 1386
Score = 681 bits (1758), Expect = 0.0
Identities = 411/989 (41%), Positives = 600/989 (60%), Gaps = 83/989 (8%)
Query: 139 NDVRKNFDTNINWSCISRRYIYIGSRCIVVRNQDIGIGLINRFINFQTQPIFIRTPFTCR 198
++ + NF + I+ IYI RCI RNQDIG L NR I +T+ IF+R+P TC+
Sbjct: 232 SEKKNNFQQKLIGRVIAEN-IYIDHRCIAPRNQDIGALLANRLITLKTKQIFLRSPLTCK 290
Query: 199 NTSWICRLCYGRSPIHGDLVELGEAVGIIAGQSIGEPGTQLTLITFHTGGVFTGGTAEYV 258
+ +WIC+LCYG S HG+L+E+GEAVGIIAGQSIGEPGTQLTL TFHTGGVFTG AE+V
Sbjct: 291 SMNWICQLCYGWSLSHGNLIEMGEAVGIIAGQSIGEPGTQLTLRTFHTGGVFTGDIAEHV 350
Query: 259 RSPSNGKIKFNENSAYPTRTRHGHPAFLCYIDLYVTIESNDIMHNVIIPPKSFLLVQNDQ 318
R+P NG I+FNEN YPTRTRHGHPA++C+ +L++ I+S + +HN+ IPPKS LLVQN+Q
Sbjct: 351 RTPFNGIIEFNENFVYPTRTRHGHPAWMCHTNLFLVIKSKNKVHNLTIPPKSLLLVQNNQ 410
Query: 319 YVKSEQIIAEIRAGTYTLNLKEKIRKHIFSDSEGEMHWSTNIYHVSEFAYSNVHILPKTS 378
YV+S+Q+IAEIRA T KEK++K+I+S+ EGEMHWST + H SE+ +SN+H++ KT
Sbjct: 411 YVESKQVIAEIRAKTSP--FKEKVQKYIYSNLEGEMHWSTKVRHASEYIHSNIHLILKTC 468
Query: 379 HLWILSGNSH-KSDTVSLSLLKDQDQMSTHSLPTAKRNTSNFLVSNNQVRLCPDHCH--- 434
H+WILSGN H K++ +S+ K+QD++ T ++N +F+ + Q+ L H +
Sbjct: 469 HIWILSGNFHKKNNDLSVLFYKNQDKIDFPISLTKEKNEFSFVKNKTQLNLFLFHFYLYK 528
Query: 435 ----FMHPTISPDTSNLLAKKRRNRFIIP---------FLFRSIRERNNELMPDISVEIP 481
F+ ++ + N + + FI+ F F +N L + ++I
Sbjct: 529 KNKIFIKSQLTNNILNKINNSKNYNFILQEYNIKKKKNFYFL----KNKNLTCPLFLKIK 584
Query: 482 IDGIIHKNSILAYFDDPQYRTQSSGIAKYKTIGIHSIFQKEDLIEYRGIREFKPKYQ-IK 540
+G++ N I A DDP Y+ ++SGI KY I + I Q + E + F+P+Y IK
Sbjct: 585 KNGVLKNNEIFAILDDPSYKVKNSGILKYGNIKVDLINQNTN-FEDPQTKLFRPRYSIIK 643
Query: 541 VDRFFFIPQEVHILSES-SSIMVRNNSIIGVNTPITLNKKSRVGGLVRVE-KNKKKIELK 598
FFFIP+EV++L++S SS+ ++NN I T IT N +S GLV+++ K ELK
Sbjct: 644 EGNFFFIPEEVYVLTQSLSSVFIKNNKFIQAGTLITSNIRSNTNGLVKIQKKGNNNYELK 703
Query: 599 IFSGDIHFPGEIDKISQHSAILIPPEMVKKKILRNQKKKTNWRYIQWITTTKKKYFVLVR 658
I G I++P E KIS+ +ILIPP K L N+ + NW Y+QWI +K+K FVL+R
Sbjct: 704 ILPGTIYYPNETYKISKQISILIPP----GKKLFNEFECKNWTYLQWIMPSKEKPFVLIR 759
Query: 659 PVILYDIADSINLVKLFPQDLFKEWDNLELKVLNFILYGNGKSIRGILDTSIQLVRTCLV 718
P + Y I+ +N LF DL K+ +E+K +N++LY + + I+ I + +IQL++TCL+
Sbjct: 760 PAVEYKISKKLNKSTLF--DLLKKNKKVEIKTINYLLYEDDEQIQIINEKNIQLIQTCLL 817
Query: 719 LNWNEDEKSSSIEEALASFVEVSTNGLIRYFLRIDLVKSHISYIRKRNDPSSSGLISYNE 778
++W +K +EA SF+++ T + FL+I L++ + + +K+ S ++ N
Sbjct: 818 VHW---KKKYFFKEANVSFLKIKTKNNFKTFLQISLIE-YSNLEKKKEKTISKNVLKKNY 873
Query: 779 SDRININPFFSIYKENIQQSLSQKHGTIRMLLNRNKENRSFIILSSSNCFQMGPFNNVKY 838
D FFSI K ++ ++K G IR++ N+N +SFIILSSS+ + F +
Sbjct: 874 YDH-----FFSISKNELK---NKKQGVIRIISNQNNGMQSFIILSSSDLVKTFKFKKLTK 925
Query: 839 HNGIKEEIN-------QFKRNHKIPIK------------------ISLGPLGVAPQI-AN 872
+ IK N +F +N KI K LG LG I N
Sbjct: 926 NISIKTNTNTSTAKFFEFNKNFKILNKKKKLNLTKKNFSIGLLLFKKLGFLGNLHNIVTN 985
Query: 873 FFSFYHLITHNKISSIKKNLQLNKFKETFQVIKYYLMDENERIYKPDLYNNIILNPFHLN 932
FS ++LI + K+ S K ++ + KF+ T Q K+YL+DE+++I K L +I N F N
Sbjct: 986 SFSSFYLINYTKLISNKYSI-ITKFQHTCQNPKWYLIDESKKINKLILGKHINYNLF--N 1042
Query: 933 WDFIHPNYCEK--TFPIISLGQFICENVCIVQTKNGPNLKSGQVITVQMDFVGIRLANPY 990
W F + +K F I LGQ + EN I + K + SGQ+I++ +++ IRLA PY
Sbjct: 1043 WCFPLFSLLKKKIDFQTIKLGQLLFENFVISKYKT--SYPSGQIISININYFIIRLAKPY 1100
Query: 991 LATPGATIHGHYGEMLYEGDILVTFIYEKSRSGDITQGLPKVEQVLEVRSIDSISMNLEK 1050
LAT GATIH +YGE + EGD L+T IYE+ +SGDI QGLPKVEQ+LE R I+S+S+NLE
Sbjct: 1101 LATGGATIHNNYGEFIKEGDTLITLIYERLKSGDIIQGLPKVEQLLEARPINSVSINLEN 1160
Query: 1051 RIDAWNERITGILGIPW----SRKISMSR 1075
+ WN + +G W S KISM +
Sbjct: 1161 GFEDWNNDMIKFIGNLWGFFLSTKISMEQ 1189
>dbj|BAC85071.1| RNA polymerase beta'' subunit [Physcomitrella patens subsp. patens]
gi|34501434|ref|NP_904221.1| RNA polymerase beta'' chain
[Physcomitrella patens subsp. patens]
gi|41017897|sp|P60290|RPOC2_PHYPA DNA-directed RNA
polymerase beta'' chain (PEP) (Plastid-encoded RNA
polymerase beta'' subunit) (RNA polymerase beta''
subunit)
Length = 1330
Score = 639 bits (1649), Expect = 0.0
Identities = 378/952 (39%), Positives = 561/952 (58%), Gaps = 71/952 (7%)
Query: 159 IYIGSRCIVVRNQDIGIGLINRFINFQTQPIFIRTPFTCRNTSWICRLCYGRSPIHGDLV 218
IYI RCI +RNQDI L+ INFQ + IFIR+P C++ WIC+LCYG S HG+L+
Sbjct: 244 IYINGRCIAIRNQDITTNLVISLINFQRKGIFIRSPLICKSMLWICQLCYGWSLTHGNLI 303
Query: 219 ELGEAVGIIAGQSIGEPGTQLTLITFHTGGVFTGGTAEYVRSPSNGKIKFNENSAYPTRT 278
ELGEAVGIIAGQSIGEPGTQLTL TFHTGGVFTG AE++R+P NG I+F+ NS YPTRT
Sbjct: 304 ELGEAVGIIAGQSIGEPGTQLTLRTFHTGGVFTGDIAEHIRTPFNGIIQFDTNSVYPTRT 363
Query: 279 RHGHPAFLCYIDLYVTIESNDIMHNVIIPPKSFLLVQNDQYVKSEQIIAEIRAGTYTLNL 338
RHGHPA++C +L V I+S +HN++IP +S LLVQ++QYV+S+Q+IAE+RA T
Sbjct: 364 RHGHPAWICNNNLSVVIKSKKKLHNLVIPTQSLLLVQSNQYVESKQVIAEVRAKTSP--F 421
Query: 339 KEKIRKHIFSDSEGEMHWSTNIYHVSEFAYSNVHILPKTSHLWILSGNSHKSDTVSLSLL 398
KEK++K+I+S+ GEMHWS+ + H SE+ +SNVH+L KT H+WIL+GN K + S
Sbjct: 422 KEKVQKYIYSNLSGEMHWSSKVQHSSEYIHSNVHLLRKTGHIWILAGNFDKDNKFSFIFY 481
Query: 399 KDQDQMSTHSLPTAKRNTSNFLVSNNQVRLCPDHCHFMHPTISPDTSNLLAKKRRNRFII 458
++QD++ + LP AK+ + F + HF++ + S+++ R
Sbjct: 482 QNQDKLD-NKLPIAKQTLNYFQLKE----------HFLNNFWNSIYSSIILYNYR----- 525
Query: 459 PFLFRSIRERNNELMPDISVEIPIDGIIHKNSILAYFDDPQYRTQSSGIAKYKTIGIHSI 518
FL + + +L+ +++P +GI+ +N I A F+DP+YR ++SGI KY I + I
Sbjct: 526 -FLEKKNNKYEKKLLFQFMLKLPKNGILKQNDIFAIFNDPKYRIKNSGIIKYGNIKVDLI 584
Query: 519 FQKEDLIEYRGIREFKPKYQI-KVDRFFFIPQEVHILSES--SSIMVRNNSIIGVNTPIT 575
+K D+ E + + +P+Y+I K FF +P+EV+IL +S SSI+V+NNS I T IT
Sbjct: 585 NKKNDIFEDQKTKTVRPRYKILKEGNFFLLPEEVYILDQSSFSSILVKNNSFIKAGTKIT 644
Query: 576 LNKKSRVGGLVRVEKNKKKIELKIFSGDIHFPGEIDKISQHSAILIPPEMVKKKILRNQK 635
N S++ G V+++K ++KI G I++P E K + + ILIPP +KI +
Sbjct: 645 FNISSKITGFVKIKKKFNNFKIKILPGSIYYPKEKQKNFKQNGILIPP---GEKIFEQFR 701
Query: 636 KKTNWRYIQWITTTKKKYFVLVRPVILYDIADSINLVKL---FPQDLFKEWDNLELKVLN 692
K NW Y++WI +K F L+RP I Y I + N + L F DL KE ++++ +
Sbjct: 702 AK-NWIYLEWIVLSKDNSFFLIRPAIEYKIIFNDNPLTLPIPFYLDLLKEQKKIKIQTVK 760
Query: 693 FILYGNGKSIRGILDTSIQLVRTCLVLNWNEDEKSSSIEEALASFVEVSTNGLIRYFLRI 752
+ILY + + + DT IQL++TCL+LNW E I+EA SF+++ N +I+ F +I
Sbjct: 761 YILYEDSEEVEINPDTDIQLIQTCLILNW---ETKVFIKEAHISFIKIRINKIIKNFFQI 817
Query: 753 DLVKSHISYIRKRNDPSSSGLISYNESDRININPFFSIYKENIQQS-------LSQKHGT 805
+L++ + L++ +++ I +N F + I Q LS+ G
Sbjct: 818 NLIE-------------NINLMNKKKNNNIILNYLFKKKRYIINQKDCEKILLLSKTWGI 864
Query: 806 IRMLLNRNKENRSFIILSSSNCFQMGPFN----NVKYHNGI--------KEEINQFKRNH 853
IR N+N+E F+ILS N FQ F+ N+K N + K+ I F
Sbjct: 865 IRTPSNKNQEKSFFLILSPFNLFQTILFDKTKQNLKIENNVEKLFTYEPKKIIKTFNIEK 924
Query: 854 KIPIKISLGPLGVAPQIANFFSFYHLITHNKISSIKKNLQ-LNKFKETFQVIKYYLMDEN 912
+ LG LG I F + + SI N ++ K+ ++ K++ ++EN
Sbjct: 925 RKNFVEFLGLLGYLQNITKSFQLFSCKKFSD-KSIPINFSIIDNLKKKIKISKWFFLNEN 983
Query: 913 ERIYKPDLYNNIILNPFHLNWDFIHPNYCEKTFPIISLGQFICENVCIVQTKNGPNLKSG 972
+++ K L N IL+ LNW F + +K + +LG F C+ + I + +SG
Sbjct: 984 KKVQKFFLTQNTILS--LLNWSFPIFDLAKKKTQLFNLGHFFCDGLSIAEYPTFS--ESG 1039
Query: 973 QVITVQMDF-VGIRLANPYLATPGATIHGHYGEMLYEGDILVTFIYEKSRSGDITQGLPK 1031
Q+I + D + IRLA PYLAT GA IH +YGE++ EGDIL+T IYE+ +SGDI QGLPK
Sbjct: 1040 QIIAIYDDLSLVIRLAKPYLATGGAIIHNNYGEIVKEGDILITLIYERLKSGDIIQGLPK 1099
Query: 1032 VEQVLEVRSIDSISMNLEKRIDAWNERITGILGIPWSRKISMSRKLLQDNIS 1083
VEQ+LE R + +S+NLEK WN+ +T G W +S + Q ++
Sbjct: 1100 VEQLLEARLTNPVSINLEKGFGEWNKDMTNFFGSLWGYFLSAQISMEQSQVN 1151
Database: nr
Posted date: Jul 5, 2005 12:34 AM
Number of letters in database: 863,360,394
Number of sequences in database: 2,540,612
Lambda K H
0.327 0.142 0.441
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,862,927,283
Number of Sequences: 2540612
Number of extensions: 81597646
Number of successful extensions: 221685
Number of sequences better than 10.0: 784
Number of HSP's better than 10.0 without gapping: 720
Number of HSP's successfully gapped in prelim test: 64
Number of HSP's that attempted gapping in prelim test: 219771
Number of HSP's gapped (non-prelim): 1594
length of query: 1085
length of database: 863,360,394
effective HSP length: 139
effective length of query: 946
effective length of database: 510,215,326
effective search space: 482663698396
effective search space used: 482663698396
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 81 (35.8 bits)
Lotus: description of TM0269b.9