BLAST2 result
BLASTP 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TM0269b.10
(382 letters)
Database: nr
2,540,612 sequences; 863,360,394 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
dbj|BAB33256.1| hypothetical protein [Lotus corniculatus var. ja... 802 0.0
emb|CAJ00820.1| ycf2 [Cucumis sativus] 691 0.0
emb|CAJ00802.1| Ycf2 [Cucumis sativus] 691 0.0
ref|YP_087028.1| ycf2 protein [Panax ginseng] gi|52220853|ref|YP... 681 0.0
emb|CAA77438.1| Ycf2 protein [Nicotiana tabacum] gi|2924274|emb|... 680 0.0
pir||A05205 hypothetical protein 1708 - common tobacco chloroplast 680 0.0
emb|CAC88087.1| ycf2 protein [Atropa belladonna] gi|28261760|ref... 665 0.0
emb|CAC88108.1| ycf2 protein [Atropa belladonna] gi|28261781|ref... 664 0.0
emb|CAD28786.1| Ycf2 protein [Calycanthus floridus var. glaucus]... 642 0.0
dbj|BAA84449.1| ycf2 [Arabidopsis thaliana] gi|5881737|dbj|BAA84... 639 0.0
emb|CAD45168.1| Ycf2 protein [Amborella trichopoda] gi|34481672|... 621 e-176
emb|CAB88802.1| ycf2 protein [Spinacia oleracea] gi|11497598|ref... 620 e-176
pir||S01446 hypothetical protein 2131 - spinach chloroplast gi|1... 616 e-175
dbj|BAD93471.1| ycf2 protein [Silene latifolia] 606 e-172
gb|AAA65873.1| ORF2216 [Epifagus virginiana] gi|336938|gb|AAA658... 569 e-161
emb|CAF28659.1| ycf2 [Nymphaea alba] gi|50250372|emb|CAF28638.1|... 549 e-155
gb|AAA73173.1| ORF2280 [Pelargonium x hortorum] gi|7521949|pir||... 422 e-117
emb|CAB67242.1| Ycf2 protein [Oenothera elata subsp. hookeri] gi... 403 e-111
dbj|BAA99493.1| orf393 [Beta vulgaris subsp. vulgaris] gi|546066... 311 2e-83
ref|NP_042505.1| ORF2054 [Pinus thunbergii] gi|7484504|pir||T075... 245 1e-63
>dbj|BAB33256.1| hypothetical protein [Lotus corniculatus var. japonicus]
gi|13359021|dbj|BAB33238.1| hypothetical protein [Lotus
corniculatus var. japonicus] gi|13518498|ref|NP_084856.1|
Ycf2 [Lotus corniculatus var. japonicus]
gi|13518480|ref|NP_084839.1| ycf2 [Lotus corniculatus
var. japonicus] gi|23822370|sp|Q9B1K6|YCF2_LOTJA Protein
ycf2
Length = 2298
Score = 802 bits (2072), Expect = 0.0
Identities = 382/382 (100%), Positives = 382/382 (100%)
Query: 1 KPFLLDDHDTSQKSRFLINGGTISPFLFNKIPKWMIDSFDTIKNRRKFFDNTDSYFSMIS 60
KPFLLDDHDTSQKSRFLINGGTISPFLFNKIPKWMIDSFDTIKNRRKFFDNTDSYFSMIS
Sbjct: 939 KPFLLDDHDTSQKSRFLINGGTISPFLFNKIPKWMIDSFDTIKNRRKFFDNTDSYFSMIS 998
Query: 61 HDEDNWLNPVKPFHRSSLISSFYKANRLRFLNNRYHFCFYCNKRLPFYVEKACINNYDFT 120
HDEDNWLNPVKPFHRSSLISSFYKANRLRFLNNRYHFCFYCNKRLPFYVEKACINNYDFT
Sbjct: 999 HDEDNWLNPVKPFHRSSLISSFYKANRLRFLNNRYHFCFYCNKRLPFYVEKACINNYDFT 1058
Query: 121 YGQFLNILFIRNKRFSLCGGKKKHAFLERDTISPIESRVFNILILNDFPQSGDEGYNLYK 180
YGQFLNILFIRNKRFSLCGGKKKHAFLERDTISPIESRVFNILILNDFPQSGDEGYNLYK
Sbjct: 1059 YGQFLNILFIRNKRFSLCGGKKKHAFLERDTISPIESRVFNILILNDFPQSGDEGYNLYK 1118
Query: 181 SFHFPIRSDPFVHRAIYSIADISVTPLTEGQIVNFERTYCQPLSDMNLPDSEGKNLHQYL 240
SFHFPIRSDPFVHRAIYSIADISVTPLTEGQIVNFERTYCQPLSDMNLPDSEGKNLHQYL
Sbjct: 1119 SFHFPIRSDPFVHRAIYSIADISVTPLTEGQIVNFERTYCQPLSDMNLPDSEGKNLHQYL 1178
Query: 241 KFNSNMGLIHIPCSEKYLPSENRKKGIPCLKKCLEKGQMYRTFQRDSVFSTLSKWNLFQT 300
KFNSNMGLIHIPCSEKYLPSENRKKGIPCLKKCLEKGQMYRTFQRDSVFSTLSKWNLFQT
Sbjct: 1179 KFNSNMGLIHIPCSEKYLPSENRKKGIPCLKKCLEKGQMYRTFQRDSVFSTLSKWNLFQT 1238
Query: 301 YIPWFLTSTGYKYLNFIFLDTFSDLLPILSSSQKFVSIFHDIMHRSDISWRILQKKWCLS 360
YIPWFLTSTGYKYLNFIFLDTFSDLLPILSSSQKFVSIFHDIMHRSDISWRILQKKWCLS
Sbjct: 1239 YIPWFLTSTGYKYLNFIFLDTFSDLLPILSSSQKFVSIFHDIMHRSDISWRILQKKWCLS 1298
Query: 361 QWNLISEISSKCFHNLLLSEEI 382
QWNLISEISSKCFHNLLLSEEI
Sbjct: 1299 QWNLISEISSKCFHNLLLSEEI 1320
>emb|CAJ00820.1| ycf2 [Cucumis sativus]
Length = 1988
Score = 691 bits (1784), Expect = 0.0
Identities = 339/385 (88%), Positives = 348/385 (90%), Gaps = 3/385 (0%)
Query: 1 KPFLLDDHDTSQKSRFLINGGTISPFLFNKIPKWMIDSFDTIKNRRKFFDNTDSYFSMIS 60
KPFLLDDH TSQKS+FLINGGTISPFLFNKIPKWMIDSFDT NRRK FDNTDSYFSMIS
Sbjct: 644 KPFLLDDHYTSQKSKFLINGGTISPFLFNKIPKWMIDSFDTRNNRRKSFDNTDSYFSMIS 703
Query: 61 HDEDNWLNPVKPFHRSSLISSFYKANRLRFLNNRYHFCFYCNKRLPFYV---EKACINNY 117
HD+DNWLNPVKPFHRSSLISSFYKA RLRFLNN +HFCFYCNKR PFYV EKA INNY
Sbjct: 704 HDQDNWLNPVKPFHRSSLISSFYKATRLRFLNNPHHFCFYCNKRFPFYVDYVEKARINNY 763
Query: 118 DFTYGQFLNILFIRNKRFSLCGGKKKHAFLERDTISPIESRVFNILILNDFPQSGDEGYN 177
DFTYGQFLNILFIRNK FSLCGGKKKHAFLERDTISPIES+V NI I NDFPQSGDE YN
Sbjct: 764 DFTYGQFLNILFIRNKIFSLCGGKKKHAFLERDTISPIESQVSNIFIPNDFPQSGDERYN 823
Query: 178 LYKSFHFPIRSDPFVHRAIYSIADISVTPLTEGQIVNFERTYCQPLSDMNLPDSEGKNLH 237
LYKSFHFPIRS+PFV RAIYSIADISVTPLTEGQIVNFERTYCQPLSDMNL DSEGKNLH
Sbjct: 824 LYKSFHFPIRSNPFVRRAIYSIADISVTPLTEGQIVNFERTYCQPLSDMNLSDSEGKNLH 883
Query: 238 QYLKFNSNMGLIHIPCSEKYLPSENRKKGIPCLKKCLEKGQMYRTFQRDSVFSTLSKWNL 297
QYL FNSNMGLIH PCSEKYLPSE RKK KKCLEKGQMYRTFQRDS FSTLSKWNL
Sbjct: 884 QYLNFNSNMGLIHTPCSEKYLPSEKRKKQSLYRKKCLEKGQMYRTFQRDSAFSTLSKWNL 943
Query: 298 FQTYIPWFLTSTGYKYLNFIFLDTFSDLLPILSSSQKFVSIFHDIMHRSDISWRILQKKW 357
FQTY+PWF TSTGYKYLN +FLDTFSDLLPILSSS KFVSIF DIMHRSD SWRIL+KK
Sbjct: 944 FQTYMPWFFTSTGYKYLNLLFLDTFSDLLPILSSSPKFVSIFDDIMHRSDRSWRILRKKL 1003
Query: 358 CLSQWNLISEISSKCFHNLLLSEEI 382
CL QWNLISEIS KC NLLLSEE+
Sbjct: 1004 CLPQWNLISEISIKCLPNLLLSEEM 1028
>emb|CAJ00802.1| Ycf2 [Cucumis sativus]
Length = 1990
Score = 691 bits (1784), Expect = 0.0
Identities = 339/385 (88%), Positives = 348/385 (90%), Gaps = 3/385 (0%)
Query: 1 KPFLLDDHDTSQKSRFLINGGTISPFLFNKIPKWMIDSFDTIKNRRKFFDNTDSYFSMIS 60
KPFLLDDH TSQKS+FLINGGTISPFLFNKIPKWMIDSFDT NRRK FDNTDSYFSMIS
Sbjct: 644 KPFLLDDHYTSQKSKFLINGGTISPFLFNKIPKWMIDSFDTRNNRRKSFDNTDSYFSMIS 703
Query: 61 HDEDNWLNPVKPFHRSSLISSFYKANRLRFLNNRYHFCFYCNKRLPFYV---EKACINNY 117
HD+DNWLNPVKPFHRSSLISSFYKA RLRFLNN +HFCFYCNKR PFYV EKA INNY
Sbjct: 704 HDQDNWLNPVKPFHRSSLISSFYKATRLRFLNNPHHFCFYCNKRFPFYVDYVEKARINNY 763
Query: 118 DFTYGQFLNILFIRNKRFSLCGGKKKHAFLERDTISPIESRVFNILILNDFPQSGDEGYN 177
DFTYGQFLNILFIRNK FSLCGGKKKHAFLERDTISPIES+V NI I NDFPQSGDE YN
Sbjct: 764 DFTYGQFLNILFIRNKIFSLCGGKKKHAFLERDTISPIESQVSNIFIPNDFPQSGDERYN 823
Query: 178 LYKSFHFPIRSDPFVHRAIYSIADISVTPLTEGQIVNFERTYCQPLSDMNLPDSEGKNLH 237
LYKSFHFPIRS+PFV RAIYSIADISVTPLTEGQIVNFERTYCQPLSDMNL DSEGKNLH
Sbjct: 824 LYKSFHFPIRSNPFVRRAIYSIADISVTPLTEGQIVNFERTYCQPLSDMNLSDSEGKNLH 883
Query: 238 QYLKFNSNMGLIHIPCSEKYLPSENRKKGIPCLKKCLEKGQMYRTFQRDSVFSTLSKWNL 297
QYL FNSNMGLIH PCSEKYLPSE RKK KKCLEKGQMYRTFQRDS FSTLSKWNL
Sbjct: 884 QYLNFNSNMGLIHTPCSEKYLPSEKRKKQSLYRKKCLEKGQMYRTFQRDSAFSTLSKWNL 943
Query: 298 FQTYIPWFLTSTGYKYLNFIFLDTFSDLLPILSSSQKFVSIFHDIMHRSDISWRILQKKW 357
FQTY+PWF TSTGYKYLN +FLDTFSDLLPILSSS KFVSIF DIMHRSD SWRIL+KK
Sbjct: 944 FQTYMPWFFTSTGYKYLNLLFLDTFSDLLPILSSSPKFVSIFDDIMHRSDRSWRILRKKL 1003
Query: 358 CLSQWNLISEISSKCFHNLLLSEEI 382
CL QWNLISEIS KC NLLLSEE+
Sbjct: 1004 CLPQWNLISEISIKCLPNLLLSEEM 1028
>ref|YP_087028.1| ycf2 protein [Panax ginseng] gi|52220853|ref|YP_087009.1| ycf2
protein [Panax ginseng] gi|51235377|gb|AAT98573.1| ycf2
protein [Panax ginseng] gi|51235356|gb|AAT98552.1| ycf2
protein [Panax ginseng]
Length = 2110
Score = 681 bits (1757), Expect = 0.0
Identities = 341/389 (87%), Positives = 347/389 (88%), Gaps = 8/389 (2%)
Query: 1 KPFLLD---DHDTSQKSRFLINGGTISPFLFNKIPKWMIDSFDTIKNRRKFFDNTDSYFS 57
KPFLLD DHDTSQKS+FLINGGTISPFLFNKIPKWMIDSF T NRRK FDNTDSYFS
Sbjct: 731 KPFLLDLLDDHDTSQKSKFLINGGTISPFLFNKIPKWMIDSFHTRNNRRKSFDNTDSYFS 790
Query: 58 MISHDEDNWLNPVKPFHRSSLISSFYKANRLRFLNNRYHFCFYCNKRLPFYVEKACINNY 117
I HD+DNWLNPVKPFHRSSLISSFYKANRLRFLNN +HFCFYCNKR PFYVEKA INN
Sbjct: 791 TIFHDQDNWLNPVKPFHRSSLISSFYKANRLRFLNNPHHFCFYCNKRFPFYVEKARINNS 850
Query: 118 DFTYGQFLNILFIRNKRFSLCGGKKKHAFLERDTISPIESRVFNILILNDFPQS-GDEGY 176
DFTYGQFLNILFI NK FSLC GKKKHAF RDTISPIES+V NI I NDFPQS GDE Y
Sbjct: 851 DFTYGQFLNILFIHNKIFSLCVGKKKHAFWGRDTISPIESQVSNIFIPNDFPQSGGDETY 910
Query: 177 NLYKSFHFPIRSDPFVHRAIYSIADISVTPLTEGQIVNFERTYCQPLSDMNLPDSEGKNL 236
NLYKSFHFP RSDPFV RAIYSIADIS TPLTEGQIVNFERTYCQPLSDMNL DSEGKN
Sbjct: 911 NLYKSFHFPSRSDPFVRRAIYSIADISGTPLTEGQIVNFERTYCQPLSDMNLSDSEGKNS 970
Query: 237 HQYLKFNSNMGLIHIPCSEKYLPSENRKKGIPCLKKCLEKGQMYRTFQRDSVFSTLSKWN 296
HQYL FNSNMGLIH PCSEKYLPSE RKK CLKKC+EKGQMYRTFQRDS FSTLSKWN
Sbjct: 971 HQYLNFNSNMGLIHTPCSEKYLPSEKRKKRSLCLKKCVEKGQMYRTFQRDSAFSTLSKWN 1030
Query: 297 LFQTYIPWFLTSTGYKYLNFIFLDTFSDLLPI--LSSSQKFVSIFHDIMHRSDISWRILQ 354
LFQTY+PWFLTSTGYKYLNFIFLDTFSDLLPI LSSSQKFVSIFHDIMH SDISWRILQ
Sbjct: 1031 LFQTYMPWFLTSTGYKYLNFIFLDTFSDLLPILSLSSSQKFVSIFHDIMHGSDISWRILQ 1090
Query: 355 KKWCLSQ--WNLISEISSKCFHNLLLSEE 381
KK CL Q WNLISEISSKCFHNLLLSEE
Sbjct: 1091 KKLCLLQWKWNLISEISSKCFHNLLLSEE 1119
>emb|CAA77438.1| Ycf2 protein [Nicotiana tabacum] gi|2924274|emb|CAA77427.1| Ycf2
protein [Nicotiana tabacum] gi|11466033|ref|NP_054575.1|
Ycf2 [Nicotiana tabacum] gi|11466000|ref|NP_054542.1|
Ycf2 [Nicotiana tabacum] gi|3915961|sp|P09976|YCF2_TOBAC
Protein ycf2
Length = 2280
Score = 680 bits (1754), Expect = 0.0
Identities = 334/382 (87%), Positives = 341/382 (88%)
Query: 1 KPFLLDDHDTSQKSRFLINGGTISPFLFNKIPKWMIDSFDTIKNRRKFFDNTDSYFSMIS 60
KPFLLDDHDTSQKS+FLINGGTISPFLFNKIPKWMIDSF T NRRK FDN DSYFSMI
Sbjct: 934 KPFLLDDHDTSQKSKFLINGGTISPFLFNKIPKWMIDSFHTRNNRRKSFDNPDSYFSMIF 993
Query: 61 HDEDNWLNPVKPFHRSSLISSFYKANRLRFLNNRYHFCFYCNKRLPFYVEKACINNYDFT 120
HD+DNWLNPVKPFHRSSLISSFYKANRLRFLNN +HFCFY N R PF VEKA INN DFT
Sbjct: 994 HDQDNWLNPVKPFHRSSLISSFYKANRLRFLNNPHHFCFYWNTRFPFSVEKARINNSDFT 1053
Query: 121 YGQFLNILFIRNKRFSLCGGKKKHAFLERDTISPIESRVFNILILNDFPQSGDEGYNLYK 180
YGQFLNILFIRNK FSLC GKKKHAF RDTISPIES+V NI I NDFPQSGDE YNLYK
Sbjct: 1054 YGQFLNILFIRNKIFSLCVGKKKHAFWGRDTISPIESQVSNIFIPNDFPQSGDETYNLYK 1113
Query: 181 SFHFPIRSDPFVHRAIYSIADISVTPLTEGQIVNFERTYCQPLSDMNLPDSEGKNLHQYL 240
SFHFP RSDPFV RAIYSIADIS TPLTEGQIVNFERTYCQPLSDMNL DSEGKNLHQYL
Sbjct: 1114 SFHFPSRSDPFVRRAIYSIADISGTPLTEGQIVNFERTYCQPLSDMNLSDSEGKNLHQYL 1173
Query: 241 KFNSNMGLIHIPCSEKYLPSENRKKGIPCLKKCLEKGQMYRTFQRDSVFSTLSKWNLFQT 300
FNSNMGLIH PCSEK L SE RKK CLKKC+EKGQMYRTFQRDS FSTLSKWNLFQT
Sbjct: 1174 NFNSNMGLIHTPCSEKDLSSEKRKKRSLCLKKCVEKGQMYRTFQRDSAFSTLSKWNLFQT 1233
Query: 301 YIPWFLTSTGYKYLNFIFLDTFSDLLPILSSSQKFVSIFHDIMHRSDISWRILQKKWCLS 360
Y+PWFLTSTGYKYLN IFLDTFSDLLPILSSSQKFV IFHDIMH S ISWRILQKK CL
Sbjct: 1234 YMPWFLTSTGYKYLNLIFLDTFSDLLPILSSSQKFVPIFHDIMHGSGISWRILQKKLCLP 1293
Query: 361 QWNLISEISSKCFHNLLLSEEI 382
QWNLISEISSKC HNLLLSEE+
Sbjct: 1294 QWNLISEISSKCLHNLLLSEEM 1315
>pir||A05205 hypothetical protein 1708 - common tobacco chloroplast
Length = 1708
Score = 680 bits (1754), Expect = 0.0
Identities = 334/382 (87%), Positives = 341/382 (88%)
Query: 1 KPFLLDDHDTSQKSRFLINGGTISPFLFNKIPKWMIDSFDTIKNRRKFFDNTDSYFSMIS 60
KPFLLDDHDTSQKS+FLINGGTISPFLFNKIPKWMIDSF T NRRK FDN DSYFSMI
Sbjct: 362 KPFLLDDHDTSQKSKFLINGGTISPFLFNKIPKWMIDSFHTRNNRRKSFDNPDSYFSMIF 421
Query: 61 HDEDNWLNPVKPFHRSSLISSFYKANRLRFLNNRYHFCFYCNKRLPFYVEKACINNYDFT 120
HD+DNWLNPVKPFHRSSLISSFYKANRLRFLNN +HFCFY N R PF VEKA INN DFT
Sbjct: 422 HDQDNWLNPVKPFHRSSLISSFYKANRLRFLNNPHHFCFYWNTRFPFSVEKARINNSDFT 481
Query: 121 YGQFLNILFIRNKRFSLCGGKKKHAFLERDTISPIESRVFNILILNDFPQSGDEGYNLYK 180
YGQFLNILFIRNK FSLC GKKKHAF RDTISPIES+V NI I NDFPQSGDE YNLYK
Sbjct: 482 YGQFLNILFIRNKIFSLCVGKKKHAFWGRDTISPIESQVSNIFIPNDFPQSGDETYNLYK 541
Query: 181 SFHFPIRSDPFVHRAIYSIADISVTPLTEGQIVNFERTYCQPLSDMNLPDSEGKNLHQYL 240
SFHFP RSDPFV RAIYSIADIS TPLTEGQIVNFERTYCQPLSDMNL DSEGKNLHQYL
Sbjct: 542 SFHFPSRSDPFVRRAIYSIADISGTPLTEGQIVNFERTYCQPLSDMNLSDSEGKNLHQYL 601
Query: 241 KFNSNMGLIHIPCSEKYLPSENRKKGIPCLKKCLEKGQMYRTFQRDSVFSTLSKWNLFQT 300
FNSNMGLIH PCSEK L SE RKK CLKKC+EKGQMYRTFQRDS FSTLSKWNLFQT
Sbjct: 602 NFNSNMGLIHTPCSEKDLSSEKRKKRSLCLKKCVEKGQMYRTFQRDSAFSTLSKWNLFQT 661
Query: 301 YIPWFLTSTGYKYLNFIFLDTFSDLLPILSSSQKFVSIFHDIMHRSDISWRILQKKWCLS 360
Y+PWFLTSTGYKYLN IFLDTFSDLLPILSSSQKFV IFHDIMH S ISWRILQKK CL
Sbjct: 662 YMPWFLTSTGYKYLNLIFLDTFSDLLPILSSSQKFVPIFHDIMHGSGISWRILQKKLCLP 721
Query: 361 QWNLISEISSKCFHNLLLSEEI 382
QWNLISEISSKC HNLLLSEE+
Sbjct: 722 QWNLISEISSKCLHNLLLSEEM 743
>emb|CAC88087.1| ycf2 protein [Atropa belladonna] gi|28261760|ref|NP_783274.1| Ycf2
[Atropa belladonna] gi|47117597|sp|Q8S8V2|YC2A_ATRBE
Protein ycf2
Length = 2291
Score = 665 bits (1717), Expect = 0.0
Identities = 332/385 (86%), Positives = 339/385 (87%), Gaps = 3/385 (0%)
Query: 1 KPFLLDDHDTSQKSRFLINGGTISPFLFNKIPKWMIDSFDTIKNRRKFFDNTDSYFSMIS 60
KPFLLDDHDTSQKS+FLINGGTISPFLFNKIPKWMIDSF T NRRK FDN DS FSMI
Sbjct: 942 KPFLLDDHDTSQKSKFLINGGTISPFLFNKIPKWMIDSFHTRNNRRKSFDNPDSNFSMIF 1001
Query: 61 HDEDNWLNPVKPFHRSSLISSFYKANRLRFLNNRYHFCFYCNKRLPFYVEKACINNYDFT 120
HD+DNWLNPVKPFHRSSLISSFYKANRLRFLNN +HFCFY N R PF VEKA INN FT
Sbjct: 1002 HDQDNWLNPVKPFHRSSLISSFYKANRLRFLNNPHHFCFYWNTRFPFSVEKARINNSYFT 1061
Query: 121 YGQFLNILFIRNKRFSLCGGKKKHAFLERDTISPIESRVFNILILNDFPQSGDEGYNLYK 180
YGQFLNILFIRNK FSLC GKKKHAF RDTISPIES+V NI I NDFPQSGDE YNLYK
Sbjct: 1062 YGQFLNILFIRNKIFSLCVGKKKHAFWGRDTISPIESQVSNIFIPNDFPQSGDETYNLYK 1121
Query: 181 SFHFPIRSDPFVHRAIYSIADISVTPLTEGQIVNFERTYCQPLSDMNLPDSEGKNLHQYL 240
SFHFP RSDPFV RAIYSIADIS TPLTEGQIVNFERTYCQPLSDMNL DSEGKNLHQYL
Sbjct: 1122 SFHFPSRSDPFVRRAIYSIADISGTPLTEGQIVNFERTYCQPLSDMNLSDSEGKNLHQYL 1181
Query: 241 KFNSNMGLIHIPCSEKYLPSENRKKGIPCLKKCLEKGQMYRTFQRDSVFSTLSKWNLFQT 300
FNSNMGLIH PCSEK L SE RKK CLKKC+EKGQMYRTFQRDS FSTLSKWNLFQT
Sbjct: 1182 NFNSNMGLIHTPCSEKDLSSEKRKKRSLCLKKCVEKGQMYRTFQRDSAFSTLSKWNLFQT 1241
Query: 301 YIPWFLTSTGYKYLNFIFLDTFSDLLPILSSSQKFVSIFHDIMHRSDISWRILQKKWCLS 360
Y+PWFLTSTGYKYLN IFLDTFSDLLPILSSSQKFVSIF DIMH S ISWRILQKK CL
Sbjct: 1242 YMPWFLTSTGYKYLNLIFLDTFSDLLPILSSSQKFVSIFPDIMHGSGISWRILQKKLCLP 1301
Query: 361 QWNL---ISEISSKCFHNLLLSEEI 382
QWNL ISEISSKC HNLLLSEE+
Sbjct: 1302 QWNLISEISEISSKCLHNLLLSEEM 1326
>emb|CAC88108.1| ycf2 protein [Atropa belladonna] gi|28261781|ref|NP_783294.1| Ycf2
[Atropa belladonna] gi|47117596|sp|Q8S8U1|YC2B_ATRBE
Protein ycf2
Length = 2291
Score = 664 bits (1712), Expect = 0.0
Identities = 331/385 (85%), Positives = 338/385 (86%), Gaps = 3/385 (0%)
Query: 1 KPFLLDDHDTSQKSRFLINGGTISPFLFNKIPKWMIDSFDTIKNRRKFFDNTDSYFSMIS 60
KPFLLDDHDTSQKS+FLINGGTISPFLFNKIPKWMIDSF T NRRK FDN DS FSMI
Sbjct: 942 KPFLLDDHDTSQKSKFLINGGTISPFLFNKIPKWMIDSFHTRNNRRKSFDNPDSNFSMIF 1001
Query: 61 HDEDNWLNPVKPFHRSSLISSFYKANRLRFLNNRYHFCFYCNKRLPFYVEKACINNYDFT 120
HD+DNWLNPVKPFHRSSLISSFYKANRLRFLNN +HFCFY N R PF VEKA INN FT
Sbjct: 1002 HDQDNWLNPVKPFHRSSLISSFYKANRLRFLNNPHHFCFYWNTRFPFSVEKARINNSYFT 1061
Query: 121 YGQFLNILFIRNKRFSLCGGKKKHAFLERDTISPIESRVFNILILNDFPQSGDEGYNLYK 180
YGQFLNILFIRNK FSLC G KKHAF RDTISPIES+V NI I NDFPQSGDE YNLYK
Sbjct: 1062 YGQFLNILFIRNKIFSLCVGNKKHAFWGRDTISPIESQVSNIFIPNDFPQSGDETYNLYK 1121
Query: 181 SFHFPIRSDPFVHRAIYSIADISVTPLTEGQIVNFERTYCQPLSDMNLPDSEGKNLHQYL 240
SFHFP RSDPFV RAIYSIADIS TPLTEGQIVNFERTYCQPLSDMNL DSEGKNLHQYL
Sbjct: 1122 SFHFPSRSDPFVRRAIYSIADISGTPLTEGQIVNFERTYCQPLSDMNLSDSEGKNLHQYL 1181
Query: 241 KFNSNMGLIHIPCSEKYLPSENRKKGIPCLKKCLEKGQMYRTFQRDSVFSTLSKWNLFQT 300
FNSNMGLIH PCSEK L SE RKK CLKKC+EKGQMYRTFQRDS FSTLSKWNLFQT
Sbjct: 1182 NFNSNMGLIHTPCSEKDLSSEKRKKRSLCLKKCVEKGQMYRTFQRDSAFSTLSKWNLFQT 1241
Query: 301 YIPWFLTSTGYKYLNFIFLDTFSDLLPILSSSQKFVSIFHDIMHRSDISWRILQKKWCLS 360
Y+PWFLTSTGYKYLN IFLDTFSDLLPILSSSQKFVSIF DIMH S ISWRILQKK CL
Sbjct: 1242 YMPWFLTSTGYKYLNLIFLDTFSDLLPILSSSQKFVSIFPDIMHGSGISWRILQKKLCLP 1301
Query: 361 QWNL---ISEISSKCFHNLLLSEEI 382
QWNL ISEISSKC HNLLLSEE+
Sbjct: 1302 QWNLISEISEISSKCLHNLLLSEEM 1326
>emb|CAD28786.1| Ycf2 protein [Calycanthus floridus var. glaucus]
gi|32399422|emb|CAD28764.1| Ycf2 protein [Calycanthus
floridus var. glaucus] gi|32480909|ref|NP_862818.1| Ycf2
protein [Calycanthus floridus var. glaucus]
gi|32480886|ref|NP_862797.1| Ycf2 protein [Calycanthus
floridus var. glaucus] gi|47117498|sp|Q7Y667|YCF2_CALFE
Protein ycf2
Length = 2287
Score = 642 bits (1656), Expect = 0.0
Identities = 322/384 (83%), Positives = 332/384 (85%), Gaps = 5/384 (1%)
Query: 1 KPFLLDDHDTSQKSRFLINGGTISPFLFNKIPKWMIDSFDTIKNRRKFFDNTDSYFSMIS 60
KPFLLDDHDTSQ+S+FLINGGTISP NKIPKWMIDSF T NRRK F+NTDSYFSMIS
Sbjct: 931 KPFLLDDHDTSQRSKFLINGGTISP---NKIPKWMIDSFHTRNNRRKSFENTDSYFSMIS 987
Query: 61 HDEDNWLNPVKPFHRSSLISSFYKANRLRFLNNRYHFCFYCNKRLPFYVEKACINNYDFT 120
HD DNWLNPVKPFHRSSLISSFYKANRLRFLN+ +HF FYCNK PFYVEK INNYD T
Sbjct: 988 HDRDNWLNPVKPFHRSSLISSFYKANRLRFLNHPHHFWFYCNKGFPFYVEKTRINNYDLT 1047
Query: 121 YGQFLNILFIRNKRFSLCGGKKKHAFLERDTISPIESRVFNILILNDFPQSGDEGYNLYK 180
YGQFLNILFIRNK FSLC GKKKH FLERDTISPIES+V +I I NDFPQSGDE YNLYK
Sbjct: 1048 YGQFLNILFIRNKIFSLCVGKKKHVFLERDTISPIESQVSDIFIPNDFPQSGDETYNLYK 1107
Query: 181 SFHFPIRSDPFVHRAIYSIADISVTPLTEGQIVNFERTYCQPLSDMNLPDSEGKNLHQYL 240
SFHFPIRSDPFV RAIYSIADIS TPLTE QIVNFERTYCQPLSDMNL DSEGKNLHQYL
Sbjct: 1108 SFHFPIRSDPFVRRAIYSIADISGTPLTEEQIVNFERTYCQPLSDMNLSDSEGKNLHQYL 1167
Query: 241 KFNSNMGLIHIPCSEKYLPSENRKKGIPCLKKCLEKGQMYRTFQRDSVFSTLSKWNLFQT 300
FNSNMGLIH PCSEKYLPS RKK CLKKC+EK QM RTFQRDS FS LSKWNLFQT
Sbjct: 1168 SFNSNMGLIHTPCSEKYLPSGKRKKRSLCLKKCVEKRQMDRTFQRDSAFSNLSKWNLFQT 1227
Query: 301 YIPWFLTSTGYKYLNFIFLDTFSDLLPILSSSQKFVSIFHDIMHRSDISWRILQKK-WC- 358
Y+PWFLTSTG KYLN LDTFSD LPILSSSQKFVSIFHDIMH SDISW I QKK W
Sbjct: 1228 YMPWFLTSTGCKYLNLTLLDTFSDPLPILSSSQKFVSIFHDIMHGSDISWPIPQKKLWAI 1287
Query: 359 LSQWNLISEISSKCFHNLLLSEEI 382
L QWNLISE SSKC NLLLSEE+
Sbjct: 1288 LPQWNLISESSSKCLQNLLLSEEM 1311
>dbj|BAA84449.1| ycf2 [Arabidopsis thaliana] gi|5881737|dbj|BAA84428.1| ycf2
[Arabidopsis thaliana] gi|7525097|ref|NP_051121.1| ycf2
[Arabidopsis thaliana] gi|7525076|ref|NP_051101.1| ycf2
[Arabidopsis thaliana] gi|6686165|sp|P56786|YCF2_ARATH
Protein ycf2
Length = 2294
Score = 639 bits (1648), Expect = 0.0
Identities = 323/387 (83%), Positives = 336/387 (86%), Gaps = 8/387 (2%)
Query: 1 KPFLLDDHDTSQKSRFLINGGTISPFLFNKIPKWMIDSFDTIKNRRKFFDNTDS-YFSMI 59
KPFLLDDH+TSQKS+FLINGGTISPFLFNKIPKWMIDSF T KNRRK FDNTDS YFS++
Sbjct: 945 KPFLLDDHNTSQKSKFLINGGTISPFLFNKIPKWMIDSFHTRKNRRKSFDNTDSAYFSIV 1004
Query: 60 SHDEDNWLNPVKPFHRSSLISSFYKANRLRFLNNRYHFCFYCNKRLPFYVEKACINNYDF 119
SHD+DNWLNPVKPF RSSLISSF KANRLRFLNN +HFCFYCNKR PFYVEKA +NN DF
Sbjct: 1005 SHDQDNWLNPVKPFQRSSLISSFSKANRLRFLNNPHHFCFYCNKRFPFYVEKARLNNSDF 1064
Query: 120 T--YGQFLNILFIRNKRFSLCGGKKKHAFLERDTISP--IESRVFNILILNDFPQSGDEG 175
T YGQFL ILFI NK FS CGGKKKHAFLERDTISP IES+V NI I NDFPQSGDE
Sbjct: 1065 TFTYGQFLTILFIHNKTFSSCGGKKKHAFLERDTISPSSIESQVSNIFISNDFPQSGDER 1124
Query: 176 YNLYKSFHFPIRSDPFVHRAIYSIADISVTPLTEGQIVNFERTYCQPLSDMNLPDSEGKN 235
YNLYKSFHFPIRSDP V RAIYSIADIS TPL EGQ VNFERTYCQ LSDMNL DSE K+
Sbjct: 1125 YNLYKSFHFPIRSDPLVRRAIYSIADISGTPLIEGQRVNFERTYCQTLSDMNLSDSEEKS 1184
Query: 236 LHQYLKFNSNMGLIHIPCSEKYLPSENRKKGIPCLKKCLEKGQMYRTFQRDSVFSTLSKW 295
LHQYL FNSNMGLIH PCSEKYL RKK CLKKC++KGQM RTFQRDS FSTLSKW
Sbjct: 1185 LHQYLNFNSNMGLIHTPCSEKYL---QRKKRSLCLKKCVDKGQMDRTFQRDSAFSTLSKW 1241
Query: 296 NLFQTYIPWFLTSTGYKYLNFIFLDTFSDLLPILSSSQKFVSIFHDIMHRSDISWRILQK 355
NLFQTY+PWF TSTGYKYLN IFLDTFSDLL ILSSSQKFVSIFHDIMH DISWRILQK
Sbjct: 1242 NLFQTYMPWFFTSTGYKYLNLIFLDTFSDLLRILSSSQKFVSIFHDIMHGLDISWRILQK 1301
Query: 356 KWCLSQWNLISEISSKCFHNLLLSEEI 382
K CL Q NLISEISSK HNLLLSEE+
Sbjct: 1302 KLCLPQRNLISEISSKSLHNLLLSEEM 1328
>emb|CAD45168.1| Ycf2 protein [Amborella trichopoda] gi|34481672|emb|CAD45149.1| Ycf2
protein [Amborella trichopoda]
gi|34500977|ref|NP_904161.1| Ycf2 protein [Amborella
trichopoda] gi|34500957|ref|NP_904142.1| Ycf2 protein
[Amborella trichopoda] gi|47117378|sp|P61241|YCF2_AMBTC
Protein ycf2
Length = 2304
Score = 621 bits (1602), Expect = e-176
Identities = 311/386 (80%), Positives = 326/386 (83%), Gaps = 6/386 (1%)
Query: 1 KPFLLDDHDTSQKSRFLINGGTISPFLFNKIPKWMIDSFDTIKNRRKFFDNTDSYFSMIS 60
KPFLLDDHDTSQ+S+ LINGGTI+ F FNKIPKWMIDSF T NR K F+NTDSYFSMIS
Sbjct: 930 KPFLLDDHDTSQRSKLLINGGTIARFWFNKIPKWMIDSFHTRNNRGKSFENTDSYFSMIS 989
Query: 61 HDEDNWLNPVKPFHRSSLISSFYKANRLRFLNNRYHFCFYCNKRLPFYVEKACINNYDFT 120
HD DNWLNPVKPFHRSSLISSFYKAN+LRFLNN +HF FYCNKR PFY EK INNYD T
Sbjct: 990 HDRDNWLNPVKPFHRSSLISSFYKANQLRFLNNPHHFWFYCNKRFPFYAEKTRINNYDLT 1049
Query: 121 YGQFLNILFIRNKRFSLCGGKKKHAFLERDTISP--IESRVFNILILNDFPQSGDEGYNL 178
YGQFLNI FIRNK FSLC GKKKH FLERDTISP IES+V +I I NDFPQSGDE YNL
Sbjct: 1050 YGQFLNISFIRNKIFSLCVGKKKHVFLERDTISPSPIESQVSDIFIPNDFPQSGDETYNL 1109
Query: 179 YKSFHFPIRSDPFVHRAIYSIADISVTPLTEGQIVNFERTYCQPLSDMNLPDSEGKNLHQ 238
YKSFHFP RSDPFV RAIYSIADIS TPLTE Q VNFE TYCQPLSD+NL DSEGKNLHQ
Sbjct: 1110 YKSFHFPTRSDPFVRRAIYSIADISGTPLTEEQRVNFEGTYCQPLSDLNLSDSEGKNLHQ 1169
Query: 239 YLKFNSNMGLIHIPCSEKYLPSENRKKGIPCLKKCLEKGQMYRTFQRDSVFSTLSKWNLF 298
YL FNSNMGLIH PCSEKYLPS RKK CL KC+EK QMYRTFQRDS FS +SKWNLF
Sbjct: 1170 YLSFNSNMGLIHTPCSEKYLPSGKRKKRNLCLNKCVEKRQMYRTFQRDSAFSNISKWNLF 1229
Query: 299 QTYIPWFLTSTGYKYLNFIFLDTFSDLLPILSSSQKFVSIFHDIMHRSDISWRILQKKW- 357
QTY+PWFLTSTG KY+NFI LDTFSD LPILSSS KFVSIFHDIMH S +W I QKK
Sbjct: 1230 QTYMPWFLTSTGCKYINFILLDTFSDPLPILSSSHKFVSIFHDIMHGS--AWSIPQKKLR 1287
Query: 358 -CLSQWNLISEISSKCFHNLLLSEEI 382
L QWNLISEISSKC NLLLSEE+
Sbjct: 1288 AILPQWNLISEISSKCLQNLLLSEEM 1313
>emb|CAB88802.1| ycf2 protein [Spinacia oleracea] gi|11497598|ref|NP_055004.1| ycf2
protein [Spinacia oleracea]
gi|19855392|sp|P08973|YCF2_SPIOL Protein ycf2
Length = 2131
Score = 620 bits (1599), Expect = e-176
Identities = 307/382 (80%), Positives = 323/382 (84%), Gaps = 16/382 (4%)
Query: 1 KPFLLDDHDTSQKSRFLINGGTISPFLFNKIPKWMIDSFDTIKNRRKFFDNTDSYFSMIS 60
K FLLDDHDT QKS+FLINGGTISPFLFNKIPKWMIDSF T N K FDNTDSYFSMIS
Sbjct: 795 KAFLLDDHDTFQKSKFLINGGTISPFLFNKIPKWMIDSFHTRNNSGKSFDNTDSYFSMIS 854
Query: 61 HDEDNWLNPVKPFHRSSLISSFYKANRLRFLNNRYHFCFYCNKRLPFYVEKACINNYDFT 120
HD++NWLNPVKPFHRSSLISSFYKAN+LRFLNN +HFCFYCNKR PFY+EKA INN DFT
Sbjct: 855 HDQNNWLNPVKPFHRSSLISSFYKANQLRFLNNPHHFCFYCNKRFPFYMEKARINNSDFT 914
Query: 121 YGQFLNILFIRNKRFSLCGGKKKHAFLERDTISPIESRVFNILILNDFPQSGDEGYNLYK 180
Y QFLNILFI NK FSLC GKKKHAFLERDTISPIES+V NI + NDFP
Sbjct: 915 YRQFLNILFIHNKLFSLCVGKKKHAFLERDTISPIESQVSNIFLPNDFP----------- 963
Query: 181 SFHFPIRSDPFVHRAIYSIADISVTPLTEGQIVNFERTYCQPLSDMNLPDSEGKNLHQYL 240
IRSD V R IYSIADIS TPLTEGQ+V+FERTYCQPLSDMNL DSE KNLHQYL
Sbjct: 964 -----IRSDLLVRRTIYSIADISGTPLTEGQLVHFERTYCQPLSDMNLSDSEKKNLHQYL 1018
Query: 241 KFNSNMGLIHIPCSEKYLPSENRKKGIPCLKKCLEKGQMYRTFQRDSVFSTLSKWNLFQT 300
FNSNMG I+ PCSEKYL SE RKK CLKKC+EKGQMYRTFQRDS FSTLSKWNLFQT
Sbjct: 1019 NFNSNMGFIYTPCSEKYLLSEKRKKRSLCLKKCVEKGQMYRTFQRDSAFSTLSKWNLFQT 1078
Query: 301 YIPWFLTSTGYKYLNFIFLDTFSDLLPILSSSQKFVSIFHDIMHRSDISWRILQKKWCLS 360
Y+PWFLTSTGYKYLNF+FLDTFSDLLPILSSSQKF+SI HDIMH S ISWRILQKK CL
Sbjct: 1079 YMPWFLTSTGYKYLNFLFLDTFSDLLPILSSSQKFLSILHDIMHGSGISWRILQKKLCLP 1138
Query: 361 QWNLISEISSKCFHNLLLSEEI 382
WNLISEISSKC HNLLL EE+
Sbjct: 1139 PWNLISEISSKCLHNLLLPEEM 1160
>pir||S01446 hypothetical protein 2131 - spinach chloroplast
gi|12246|emb|CAA30743.1| unnamed protein product
[Spinacia oleracea]
Length = 2131
Score = 616 bits (1588), Expect = e-175
Identities = 305/382 (79%), Positives = 321/382 (83%), Gaps = 16/382 (4%)
Query: 1 KPFLLDDHDTSQKSRFLINGGTISPFLFNKIPKWMIDSFDTIKNRRKFFDNTDSYFSMIS 60
K FLLDDHDT QKS+FLINGGTISPFLFNKIPKWMIDSF T N K FDNTDSYFSM S
Sbjct: 795 KAFLLDDHDTFQKSKFLINGGTISPFLFNKIPKWMIDSFHTRNNSGKSFDNTDSYFSMTS 854
Query: 61 HDEDNWLNPVKPFHRSSLISSFYKANRLRFLNNRYHFCFYCNKRLPFYVEKACINNYDFT 120
HD++NWLNPVKPFHRSSLISSFYKAN+LRFLNN +HFCFYCNKR PFY+EKA INN DFT
Sbjct: 855 HDQNNWLNPVKPFHRSSLISSFYKANQLRFLNNPHHFCFYCNKRFPFYMEKARINNSDFT 914
Query: 121 YGQFLNILFIRNKRFSLCGGKKKHAFLERDTISPIESRVFNILILNDFPQSGDEGYNLYK 180
Y QFLNILFI NK FSLC GKK HAFLERDTISPIES+V NI + NDFP
Sbjct: 915 YRQFLNILFIHNKLFSLCVGKKNHAFLERDTISPIESQVSNIFLPNDFP----------- 963
Query: 181 SFHFPIRSDPFVHRAIYSIADISVTPLTEGQIVNFERTYCQPLSDMNLPDSEGKNLHQYL 240
IRSD V R IYSIADIS TPLTEGQ+V+FERTYCQPLSDMNL DSE KNLHQYL
Sbjct: 964 -----IRSDLLVRRPIYSIADISGTPLTEGQLVHFERTYCQPLSDMNLSDSEKKNLHQYL 1018
Query: 241 KFNSNMGLIHIPCSEKYLPSENRKKGIPCLKKCLEKGQMYRTFQRDSVFSTLSKWNLFQT 300
FNSNMG I+ PCSEKYL SE RKK CLKKC+EKGQMYRTFQRDS FSTLSKWNLFQT
Sbjct: 1019 NFNSNMGFIYTPCSEKYLLSEKRKKRSLCLKKCVEKGQMYRTFQRDSAFSTLSKWNLFQT 1078
Query: 301 YIPWFLTSTGYKYLNFIFLDTFSDLLPILSSSQKFVSIFHDIMHRSDISWRILQKKWCLS 360
Y+PWFLTSTGYKYLNF+FLDTFSDLLPILSSSQKF+SI HDIMH S ISWRILQKK CL
Sbjct: 1079 YMPWFLTSTGYKYLNFLFLDTFSDLLPILSSSQKFLSILHDIMHGSGISWRILQKKLCLP 1138
Query: 361 QWNLISEISSKCFHNLLLSEEI 382
WNLISEISSKC HNLLL EE+
Sbjct: 1139 PWNLISEISSKCLHNLLLPEEM 1160
>dbj|BAD93471.1| ycf2 protein [Silene latifolia]
Length = 2223
Score = 606 bits (1563), Expect = e-172
Identities = 304/382 (79%), Positives = 322/382 (83%), Gaps = 18/382 (4%)
Query: 1 KPFLLDDHDTSQKSRFLINGGTISPFLFNKIPKWMIDSFDTIKNRRKFFDNTDSYFSMIS 60
K FLL+DHDT QKS+ LING TISPFLFNKIPKWMIDSFDT N R TDSYFSMIS
Sbjct: 894 KAFLLNDHDTFQKSKLLINGRTISPFLFNKIPKWMIDSFDTRNNHRN--GKTDSYFSMIS 951
Query: 61 HDEDNWLNPVKPFHRSSLISSFYKANRLRFLNNRYHFCFYCNKRLPFYVEKACINNYDFT 120
HD++NWLNPVKPFHRSSLISSFYKANRLRFLNN +HFCFYCNKR PFY+EKA INNYDFT
Sbjct: 952 HDQNNWLNPVKPFHRSSLISSFYKANRLRFLNNPHHFCFYCNKRFPFYMEKARINNYDFT 1011
Query: 121 YGQFLNILFIRNKRFSLCGGKKKHAFLERDTISPIESRVFNILILNDFPQSGDEGYNLYK 180
Y QFL+ILFIRNK F+LC GKKKHAFLERDTISPIES+V NI I NDF
Sbjct: 1012 YRQFLDILFIRNKIFALCVGKKKHAFLERDTISPIESQVSNIFIPNDFT----------- 1060
Query: 181 SFHFPIRSDPFVHRAIYSIADISVTPLTEGQIVNFERTYCQPLSDMNLPDSEGKNLHQYL 240
IRSD FV R I SI DIS TPLTEGQIV+FERT+ QPLSDMNL DSE KNLHQYL
Sbjct: 1061 -----IRSDLFVRRTIDSITDISGTPLTEGQIVHFERTFYQPLSDMNLSDSERKNLHQYL 1115
Query: 241 KFNSNMGLIHIPCSEKYLPSENRKKGIPCLKKCLEKGQMYRTFQRDSVFSTLSKWNLFQT 300
FNSNMGLI+ PCS+KYLPSE RKK CLKKC+EKGQMYRTFQRDS FSTLSKWNLFQT
Sbjct: 1116 NFNSNMGLIYTPCSDKYLPSEKRKKRSLCLKKCVEKGQMYRTFQRDSAFSTLSKWNLFQT 1175
Query: 301 YIPWFLTSTGYKYLNFIFLDTFSDLLPILSSSQKFVSIFHDIMHRSDISWRILQKKWCLS 360
Y+PWFLTSTGYKYLNF+F DTFSDLLPILSSSQKFVSIFHDIMH S ISWRILQKK CL
Sbjct: 1176 YMPWFLTSTGYKYLNFLFFDTFSDLLPILSSSQKFVSIFHDIMHGSYISWRILQKKVCLP 1235
Query: 361 QWNLISEISSKCFHNLLLSEEI 382
QWNLISEIS+KC HNLLLSEE+
Sbjct: 1236 QWNLISEISNKCLHNLLLSEEM 1257
>gb|AAA65873.1| ORF2216 [Epifagus virginiana] gi|336938|gb|AAA65867.1| ORF2216
[Epifagus virginiana] gi|11466978|ref|NP_054397.1| Ycf2
[Epifagus virginiana] gi|11466972|ref|NP_054393.1| Ycf2
[Epifagus virginiana] gi|7489314|pir||S78398 hypothetical
protein 2216 - beechdrops plastid
gi|231442|sp|P30072|YCF2_EPIVI Protein ycf2
Length = 2216
Score = 569 bits (1467), Expect = e-161
Identities = 290/384 (75%), Positives = 313/384 (80%), Gaps = 9/384 (2%)
Query: 1 KPFLLDDHDTSQKSRFLINGGTISPFLFNKIPKWMIDSFDTIKNRRKFFDNTDSYFSMIS 60
KPFLL H TS+K + LI GG PFLFNKIP+ MIDSF TI NR K FDNTDSY SMI
Sbjct: 878 KPFLLGYHGTSRKLKLLITGGR--PFLFNKIPRCMIDSFHTINNRSKSFDNTDSYLSMIF 935
Query: 61 HDEDNWLNPVKPFHRSSLISSFYKANRLRFLNNRYHFCFYCNKRLPFYVEKACINNYDFT 120
H++DNWLN VKPFHRSSLIS FYKANRL+FLNN ++FCFYCN RLPFYVEKA I+NY FT
Sbjct: 936 HNKDNWLNLVKPFHRSSLISYFYKANRLQFLNNPHNFCFYCNTRLPFYVEKAHIHNYYFT 995
Query: 121 YGQFLNILFIRNKRFSLCGGKKKHAFL-ERDTISPIESRVFNILILNDFPQSGDEGYNLY 179
YGQFLNILFIRNK FSLC KKKHAF RDTISPIES+V I I +FPQSGDE YNL
Sbjct: 996 YGQFLNILFIRNKIFSLCVDKKKHAFWGGRDTISPIESQVSKIFIPKNFPQSGDETYNLS 1055
Query: 180 KSFHFPIRSDPFVHRAIYSIADISVTPLTEGQIVNFERTYCQPLSDMNLPDSEGKNLHQY 239
+ FHFP R DPFV IA+I TPLTEGQIVN RTYCQPLSDMNL DSEGKN HQY
Sbjct: 1056 QPFHFPSRYDPFVR----LIANIYGTPLTEGQIVNLGRTYCQPLSDMNLSDSEGKNFHQY 1111
Query: 240 LKFNSNMGLIHIPCSEKYLPSENRKKGIPCLK--KCLEKGQMYRTFQRDSVFSTLSKWNL 297
L FNSNMGLIH PCS+KYLPSE RKK C+ KC+EKGQMYRTFQR FSTLSKWNL
Sbjct: 1112 LNFNSNMGLIHTPCSDKYLPSEKRKKRSLCINKYKCVEKGQMYRTFQRKVAFSTLSKWNL 1171
Query: 298 FQTYIPWFLTSTGYKYLNFIFLDTFSDLLPILSSSQKFVSIFHDIMHRSDISWRILQKKW 357
FQTY+PWFLTS GYKY+N IFLDTFS+LL ILSSS+KFVSIF++IMH S ISWRI+ KK
Sbjct: 1172 FQTYMPWFLTSAGYKYINLIFLDTFSELLSILSSSKKFVSIFNNIMHGSGISWRIINKKR 1231
Query: 358 CLSQWNLISEISSKCFHNLLLSEE 381
CL QWNLISEISSKC HNLLLSEE
Sbjct: 1232 CLPQWNLISEISSKCLHNLLLSEE 1255
>emb|CAF28659.1| ycf2 [Nymphaea alba] gi|50250372|emb|CAF28638.1| ycf2 [Nymphaea alba]
gi|50346848|ref|YP_053219.1| ycf2 [Nymphaea alba]
gi|50346827|ref|YP_053198.1| ycf2 [Nymphaea alba]
Length = 2253
Score = 549 bits (1414), Expect = e-155
Identities = 282/384 (73%), Positives = 298/384 (77%), Gaps = 36/384 (9%)
Query: 1 KPFLLDDHDTSQKSRFLINGGTISPFLFNKIPKWMIDSFDTIKNRRKFFDNTDSYFSMIS 60
KPFLLDDHDTSQ+S+FLINGGTIS FLFNKIPKWMIDS T NRRKFFDNTDSYFSMIS
Sbjct: 929 KPFLLDDHDTSQRSKFLINGGTISAFLFNKIPKWMIDSLHTRNNRRKFFDNTDSYFSMIS 988
Query: 61 HDEDNWLNPVKPFHRSSLISSFYKANRLRFLNNRYHFCFYCNKRLPFYVEKACINNYDFT 120
HD DNWLNPVKPFHRSSLISSFYKAN LRFLNN +HFCFY NKR PFY EK I+NYD T
Sbjct: 989 HDRDNWLNPVKPFHRSSLISSFYKANLLRFLNNPHHFCFYSNKRFPFYAEKTRIDNYDLT 1048
Query: 121 YGQFLNILFIRNKRFSLCGGKKKHAFLERDTISPIESRVFNILILNDFPQSGDEGYNLYK 180
YGQFL+I FIRNK FSLC GKKKH FLERDTISPIES+V +I I NDFPQSGDE YNLYK
Sbjct: 1049 YGQFLHISFIRNKIFSLCVGKKKHVFLERDTISPIESQVSDIFIPNDFPQSGDETYNLYK 1108
Query: 181 SFHFPIRSDPFVHRAIYSIADISVTPLTEGQIVNFERTYCQPLSDMNLPDSEGKNLHQYL 240
S PL+ TYCQPLSDMNL DSEGKNLHQYL
Sbjct: 1109 S-----------------------QPLS---------TYCQPLSDMNLSDSEGKNLHQYL 1136
Query: 241 KFNSNMGLIHIPCSEKYLPSENRKKGIPCLKKCLEKGQMYRTFQRDSVFSTLSKWNLFQT 300
FNSNMGLIH PCSEK LPS KK CLKKC+EK QMYR FQRDS FS LSKWNLFQT
Sbjct: 1137 SFNSNMGLIHTPCSEKDLPS--AKKRNLCLKKCVEKRQMYRAFQRDSAFSNLSKWNLFQT 1194
Query: 301 YIPWFLTSTGYKYLNFIFLDTFSDLLPILSSSQKFVSIFHDIMHRSDISWRILQ-KKWC- 358
Y+PWFLTS G KY+NFI LDTFSD LPILSSS +FVS F+DIMH SDISW ILQ W
Sbjct: 1195 YMPWFLTSAGCKYINFILLDTFSDPLPILSSSHQFVSFFYDIMHGSDISWSILQIPLWAI 1254
Query: 359 LSQWNLISEISSKCFHNLLLSEEI 382
L +WNLISEISSKC N+LL EE+
Sbjct: 1255 LPRWNLISEISSKCLQNILLPEEM 1278
>gb|AAA73173.1| ORF2280 [Pelargonium x hortorum] gi|7521949|pir||T31352 hypothetical
protein - Pelargonium x hortorum
gi|47117398|sp|Q32836|YCF2_PELHO Protein ycf2
Length = 2109
Score = 422 bits (1085), Expect = e-117
Identities = 241/401 (60%), Positives = 268/401 (66%), Gaps = 51/401 (12%)
Query: 1 KPFLLDDHDTSQKSRFLINGGTISPFLFNKIPKWMIDSFDTIKNRRKFFDNTDSYFSMIS 60
KP LLDDH+TSQKS+ + GTI DNTDSYFS++
Sbjct: 654 KPCLLDDHETSQKSKIV---GTI--------------------------DNTDSYFSILF 684
Query: 61 HDEDNWLNPVKPFHRSSLISSFYKANRLRFLNNRYHFCFYCNKRLPFYVEKACINNYDFT 120
DE+NW+NPVK F RSSLIS+FYKANRLRFLNN + F FYCNK PF VEKA N DF
Sbjct: 685 DDEENWMNPVKAFQRSSLISAFYKANRLRFLNNPHRFSFYCNKIFPFVVEKARFKNSDFL 744
Query: 121 YGQFLNILFIRNKRFSLCGGKKKHAFLERDTISPIES--------RVFNILILNDFPQSG 172
YGQFL FIR K FSLCG +KHAF ER T+ PIES +V ILI +DFPQSG
Sbjct: 745 YGQFLKTFFIRKKPFSLCG--EKHAFGERATLLPIESEVSKILIPQVSKILIPDDFPQSG 802
Query: 173 DEGYNLYKSFHFPIRSDPFVHRAIYSIADISVTPLTEGQIVNFERTYCQPLSDMNLPDSE 232
DE YNL KSFHFP RS P V RA+YSIADIS PLTEGQ+VN ERT QPLSD++L DSE
Sbjct: 803 DERYNLCKSFHFPTRSVPLVDRALYSIADISERPLTEGQMVNLERTSFQPLSDIHLSDSE 862
Query: 233 GKNLHQYLKFNSNMGLIHIPCSEKYLPSENRKKGI--PCLKKCLEKGQMYRTFQRDSVFS 290
KNLHQ L FNSNMGLIH P SEK LPSE RKK LKKC+EKGQM+RT +
Sbjct: 863 RKNLHQDLNFNSNMGLIHTPYSEKDLPSEKRKKRNLGRNLKKCVEKGQMFRTLLSKMYRT 922
Query: 291 TLSKWNLFQTYIPWFLTSTGYKYLNFIFLDTFSDLLPILSSS--QKFVSIFHDIMH--RS 346
LSKWNLFQTY+PWFLTSTGYKYL +FLD FSDL+PILS Q VS+F I+ R
Sbjct: 923 LLSKWNLFQTYMPWFLTSTGYKYLTLLFLDLFSDLVPILSLGIRQNCVSLFDHILGDIRD 982
Query: 347 DI------SWRILQKKWCLSQWNLISEISSKCFHNLLLSEE 381
DI W+ILQ+KW L Q N I EIS C NL LS E
Sbjct: 983 DIRQGVIRPWQILQEKWVLPQRNRIREISRMCLRNLTLSAE 1023
>emb|CAB67242.1| Ycf2 protein [Oenothera elata subsp. hookeri]
gi|6723793|emb|CAB67203.1| Ycf2 protein [Oenothera elata
subsp. hookeri] gi|13518414|ref|NP_084773.1| Ycf2 protein
[Oenothera elata subsp. hookeri]
gi|13518377|ref|NP_084736.1| Ycf2 protein [Oenothera
elata subsp. hookeri] gi|23822374|sp|Q9MEF2|YCF2_OENHO
Protein ycf2
Length = 2280
Score = 403 bits (1035), Expect = e-111
Identities = 207/272 (76%), Positives = 219/272 (80%), Gaps = 16/272 (5%)
Query: 1 KPFLLDDHDTSQKSRFLINGGTISPFLFNKIPKWMIDSFDTIKNRRKFFDNTDSYFSMIS 60
KP LLDDH+T QKS+ L FNK P+ MIDSF T NR K + DSYFSMIS
Sbjct: 886 KPLLLDDHETFQKSKLL----------FNKKPEGMIDSFHTRNNRGK---SLDSYFSMIS 932
Query: 61 HDEDNWLNPVKPFHRSSLISSFYKANRLRFLNNRYHFCFYCNKRLPFYVEKACINNYDFT 120
HD+DNWLNPVKPFHRSSLISSFYKANRLRFLNN + F F+CNKR PFYV+ I N DFT
Sbjct: 933 HDQDNWLNPVKPFHRSSLISSFYKANRLRFLNNPHDFGFFCNKRFPFYVD---IKNLDFT 989
Query: 121 YGQFLNILFIRNKRFSLCGGKKKHAFLERDTISPIESRVFNILILNDFPQSGDEGYNLYK 180
YGQFLNILFIRN +FSLCG KKKHAFLERDTIS IES+V N+ I NDFPQSGDE YNLYK
Sbjct: 990 YGQFLNILFIRNTKFSLCGDKKKHAFLERDTISSIESQVSNLFIPNDFPQSGDETYNLYK 1049
Query: 181 SFHFPIRSDPFVHRAIYSIADISVTPLTEGQIVNFERTYCQPLSDMNLPDSEGKNLHQYL 240
SFHFP RSDPFV RAIYSIADIS TPLTEGQIVNFERTYCQPLSDMNL DSEGKNLHQYL
Sbjct: 1050 SFHFPSRSDPFVRRAIYSIADISGTPLTEGQIVNFERTYCQPLSDMNLSDSEGKNLHQYL 1109
Query: 241 KFNSNMGLIHIPCSEKYLPSENRKKGIPCLKK 272
FNSNMGLIH PCSEK SE RKK P +K
Sbjct: 1110 NFNSNMGLIHTPCSEKEKKSEKRKKKKPEKRK 1141
Score = 124 bits (311), Expect = 5e-27
Identities = 70/129 (54%), Positives = 84/129 (64%), Gaps = 2/129 (1%)
Query: 255 EKYLPSENRKKGIPCLKKCLEKGQMYRTFQRDSVFSTLSKWNLFQTYI-PWFLTSTGYKY 313
EK KK LK+ +EK QM R Q + V LS WNLF+TY+ P+ LTSTGY +
Sbjct: 1182 EKKPEKRKEKKQSLYLKQLVEKVQMDRALQGERVSLILSNWNLFKTYVMPFSLTSTGYNF 1241
Query: 314 LNFIFLDTF-SDLLPILSSSQKFVSIFHDIMHRSDISWRILQKKWCLSQWNLISEISSKC 372
+ +FLDT S ++P+L SS KFVSI + I ISWRILQKK CL QWN IS IS+KC
Sbjct: 1242 VKLMFLDTLGSYVMPLLRSSPKFVSICYAISDPCGISWRILQKKLCLLQWNWISAISNKC 1301
Query: 373 FHNLLLSEE 381
FH L LSEE
Sbjct: 1302 FHKLFLSEE 1310
>dbj|BAA99493.1| orf393 [Beta vulgaris subsp. vulgaris] gi|54606691|dbj|BAD66714.1|
orf393 [Beta vulgaris subsp. vulgaris]
gi|9838487|ref|NP_064099.1| hypothetical protein [Beta
vulgaris subsp. vulgaris]
Length = 393
Score = 311 bits (798), Expect = 2e-83
Identities = 155/197 (78%), Positives = 161/197 (81%), Gaps = 16/197 (8%)
Query: 1 KPFLLDDHDTSQKSRFLINGGTISPFLFNKIPKWMIDSFDTIKNRRKFFDNTDSYFSMIS 60
K FLLDDHDT QKS+FLINGGTISPFLFNKIPKWMIDSF T N K FDNTDSYFSMIS
Sbjct: 194 KAFLLDDHDTFQKSKFLINGGTISPFLFNKIPKWMIDSFHTRNNHGKSFDNTDSYFSMIS 253
Query: 61 HDEDNWLNPVKPFHRSSLISSFYKANRLRFLNNRYHFCFYCNKRLPFYVEKACINNYDFT 120
HD++NWLNPVKPFHRSSLISSFYKANRLRFLNN +HFCFYCNKR PFY+EKA INNYDFT
Sbjct: 254 HDQNNWLNPVKPFHRSSLISSFYKANRLRFLNNPHHFCFYCNKRFPFYMEKARINNYDFT 313
Query: 121 YGQFLNILFIRNKRFSLCGGKKKHAFLERDTISPIESRVFNILILNDFPQSGDEGYNLYK 180
Y QFLNILFI NKRFSLC GKKKHAFLERDTISPIES+V NI I ND
Sbjct: 314 YRQFLNILFIHNKRFSLCVGKKKHAFLERDTISPIESQVSNIFIPND------------- 360
Query: 181 SFHFPIRSDPFVHRAIY 197
FPIRSD FV R IY
Sbjct: 361 ---FPIRSDLFVRRTIY 374
>ref|NP_042505.1| ORF2054 [Pinus thunbergii] gi|7484504|pir||T07584 hypothetical
protein 2054 - Japanese black pine chloroplast
gi|1175644|sp|P41653|YCF2_PINTH Protein ycf2
gi|1262745|dbj|BAA04460.1| ORF2054 [Pinus thunbergii]
Length = 2054
Score = 245 bits (626), Expect = 1e-63
Identities = 172/418 (41%), Positives = 233/418 (55%), Gaps = 54/418 (12%)
Query: 1 KPFLLDDHDTSQKSRFLINGGTISPFLFNKIP--KWMIDSFDTIKNRRKFFDNTDSYFSM 58
K FLL DH+ SQ+S+ LI+ GTI+PF+ NKIP +ID FD NR + FDNT YFS
Sbjct: 689 KTFLLYDHNLSQRSKLLIDEGTIAPFVTNKIPINPLIIDFFDNENNRMESFDNT--YFST 746
Query: 59 ISHDEDNWLNPVKPFHRSSLISSFYKANRLRFLNNRYHFCFYCNKRLPFYVEKACINNYD 118
IS+D DNWLNPVK +SSLI+SF+ AN L+F + +H RLP +++ I +
Sbjct: 747 ISNDRDNWLNPVKLSDQSSLIASFHGANTLQFFDYLHHTRPNYRNRLPSDMKRFYIKRNN 806
Query: 119 FTYGQFLNILFIRNKRFSLCGGKKKHAFLERDTISPIESRVFNILILNDF--PQSGDEG- 175
FTYGQ N+L I N SL G+ E++TIS I+S+V NIL+ +SGD+
Sbjct: 807 FTYGQLFNLLIIHNNLSSLPIGEIGPVHSEKETISFIKSQVSNILLPKYLKRKRSGDQTF 866
Query: 176 ---YNLYKSFHFPIRSDPFVH--RAIYSIADISVTPLTEGQIVNFERTYCQPLSDMNLPD 230
Y+LY+SF+ R +PFV R + SI +IS TPLT+ QIVNFE+ +CQP D
Sbjct: 867 VLIYDLYRSFNLLTRLNPFVREKRYLSSIEEISTTPLTKEQIVNFEKNFCQPF--FKRSD 924
Query: 231 SEGKNLHQYLK--FNSNMGLIHIPCSEKYLPSE---NRKKGI----------PCLKKCL- 274
SE N Q K F+SN+GLI + L SE N+ + I CLK +
Sbjct: 925 SEENNFDQCFKRGFSSNVGLIQTRSYQDDLLSEMFSNKNEEIFPRIQDWFVTECLKNKIV 984
Query: 275 ---------------EKGQMYRTFQRDSVFSTLSKWNLFQTYIPWFLTSTGYKYLNFIFL 319
E+ +YR Q DS+F SKW+LF+TY+PWF TS KY+ + L
Sbjct: 985 NEDIDGRSTLSNSSKEEQNIYRISQIDSIF---SKWDLFKTYMPWFFTSAWCKYIENMLL 1041
Query: 320 DTFSDLLPILSSSQKFVSIF----HDIMHRSDISWRILQKKWCLSQWNLISEISSKCF 373
DT S++L L S FVSI H+I+ + +I W + W Q L + + +K F
Sbjct: 1042 DTLSEIL--LHGSNPFVSILQNIKHNILLKRNILWELSHPLWEPIQCKLRTNLINKFF 1097
Database: nr
Posted date: Jul 5, 2005 12:34 AM
Number of letters in database: 863,360,394
Number of sequences in database: 2,540,612
Lambda K H
0.325 0.141 0.447
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 693,765,456
Number of Sequences: 2540612
Number of extensions: 30463092
Number of successful extensions: 84364
Number of sequences better than 10.0: 56
Number of HSP's better than 10.0 without gapping: 28
Number of HSP's successfully gapped in prelim test: 28
Number of HSP's that attempted gapping in prelim test: 84246
Number of HSP's gapped (non-prelim): 88
length of query: 382
length of database: 863,360,394
effective HSP length: 130
effective length of query: 252
effective length of database: 533,080,834
effective search space: 134336370168
effective search space used: 134336370168
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 76 (33.9 bits)
Lotus: description of TM0269b.10