BLAST2 result
BLASTP 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TM0266.20
(284 letters)
Database: nr
2,540,612 sequences; 863,360,394 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pir||S31164 endopeptidase Clp (EC 3.4.21.-) ATP-binding chain, c... 532 e-150
emb|CAE05148.2| OSJNBa0039C07.4 [Oryza sativa (japonica cultivar... 521 e-147
pir||B35905 endopeptidase Clp (EC 3.4.21.-) ATP-binding chain cd... 515 e-145
pir||A35905 endopeptidase Clp (EC 3.4.21.-) ATP-binding chain cd... 515 e-145
dbj|BAB08738.1| ATP-dependent Clp protease, ATP-binding subunit ... 506 e-142
gb|AAC04687.1| ClpC [Arabidopsis thaliana] gi|25289891|pir||T522... 500 e-140
emb|CAB87915.1| AtClpC [Arabidopsis thaliana] gi|18408722|ref|NP... 494 e-138
dbj|BAA82062.1| AtClpC [Arabidopsis thaliana] gi|25289890|pir||T... 494 e-138
emb|CAA53077.1| clpA [Brassica napus] gi|1168972|sp|P46523|CLPA_... 483 e-135
gb|AAD02267.1| ClpC protease [Spinacia oleracea] 468 e-131
ref|YP_063564.1| Clp protease ATP binding subunit [Gracilaria te... 433 e-120
dbj|BAB74698.1| endopeptidase Clp ATP-binding chain [Nostoc sp. ... 432 e-120
ref|ZP_00110397.1| COG0542: ATPases with chaperone activity, ATP... 431 e-119
ref|ZP_00162274.2| COG0542: ATPases with chaperone activity, ATP... 431 e-119
ref|ZP_00325035.1| COG0542: ATPases with chaperone activity, ATP... 429 e-119
ref|NP_893205.1| ClpC [Prochlorococcus marinus subsp. pastoris s... 428 e-119
ref|ZP_00514408.1| UvrB/UvrC protein:AAA ATPase, central region:... 427 e-118
pir||S71553 endopeptidase Clp (EC 3.4.21.-) ATP-binding chain cl... 427 e-118
ref|ZP_00163644.2| COG0542: ATPases with chaperone activity, ATP... 427 e-118
ref|NP_681098.1| ATP-dependent Clp protease regulatory subunit [... 427 e-118
>pir||S31164 endopeptidase Clp (EC 3.4.21.-) ATP-binding chain, chloroplast
[similarity] - garden pea gi|461753|sp|P35100|CLPA_PEA
ATP-dependent clp protease ATP-binding subunit clpA
homolog, chloroplast precursor gi|169128|gb|AAA33680.1|
nuclear encoded precursor to chloroplast protein
Length = 922
Score = 532 bits (1371), Expect = e-150
Identities = 271/283 (95%), Positives = 277/283 (97%)
Query: 1 SFIFSGPTGVGKSELAKTLASYYFGSEEAMIRLDMSEFMERHTVSKLIGSPPGYVGYTEG 60
SFIFSGPTGVGKSELAK LA+YYFGSEEAMIRLDMSEFMERHTVSKLIGSPPGYVGYTEG
Sbjct: 638 SFIFSGPTGVGKSELAKALAAYYFGSEEAMIRLDMSEFMERHTVSKLIGSPPGYVGYTEG 697
Query: 61 GQLTEAVRRRPYTVVLFDEIEKAHPDVFNMMLQILEDGRLTDSKGRTVDFKNTLLIMTSN 120
GQLTEAVRRRPYTVVLFDEIEKAHPDVFNMMLQILEDGRLTDSKGRTVDFKNTLLIMTSN
Sbjct: 698 GQLTEAVRRRPYTVVLFDEIEKAHPDVFNMMLQILEDGRLTDSKGRTVDFKNTLLIMTSN 757
Query: 121 VGSSVIEKGGRKIGFDLDYDEKDSSYNRIKSLVTEELKQYFRPEFLNRLDEMIVFRQLTK 180
VGSSVIEKGGR+IGFDLDYDEKDSSYNRIKSLVTEELKQYFRPEFLNRLDEMIVFRQLTK
Sbjct: 758 VGSSVIEKGGRRIGFDLDYDEKDSSYNRIKSLVTEELKQYFRPEFLNRLDEMIVFRQLTK 817
Query: 181 LEVKEIADIMLKEVFDRLKTKEIDLSVTERFRDRVVEEGYDPSYGARPLRRAIMRLLEDS 240
LEVKEIADIMLKEVF RLKTKEI+L VTERFRDRVV+EGY+PSYGARPLRRAIMRLLEDS
Sbjct: 818 LEVKEIADIMLKEVFQRLKTKEIELQVTERFRDRVVDEGYNPSYGARPLRRAIMRLLEDS 877
Query: 241 MAEKMLAGEIKEGDSVIIDADSDGKVIVLNGSSGAPESLPEAL 283
MAEKMLA EIKEGDSVI+D DSDGKVIVLNGSSG PESLPEAL
Sbjct: 878 MAEKMLAREIKEGDSVIVDVDSDGKVIVLNGSSGTPESLPEAL 920
>emb|CAE05148.2| OSJNBa0039C07.4 [Oryza sativa (japonica cultivar-group)]
gi|50923949|ref|XP_472335.1| OSJNBa0039C07.4 [Oryza
sativa (japonica cultivar-group)]
Length = 888
Score = 521 bits (1343), Expect = e-147
Identities = 263/283 (92%), Positives = 273/283 (95%)
Query: 1 SFIFSGPTGVGKSELAKTLASYYFGSEEAMIRLDMSEFMERHTVSKLIGSPPGYVGYTEG 60
SFIFSGPTGVGKSELAK LA+YYFGSEEAMIRLDMSEFMERHTVSKLIGSPPGYVGYTEG
Sbjct: 604 SFIFSGPTGVGKSELAKALAAYYFGSEEAMIRLDMSEFMERHTVSKLIGSPPGYVGYTEG 663
Query: 61 GQLTEAVRRRPYTVVLFDEIEKAHPDVFNMMLQILEDGRLTDSKGRTVDFKNTLLIMTSN 120
GQLTEAVRRRPYTVVLFDEIEKAHPDVFNMMLQILEDGRLTDSKGRTVDFKNTLLIMTSN
Sbjct: 664 GQLTEAVRRRPYTVVLFDEIEKAHPDVFNMMLQILEDGRLTDSKGRTVDFKNTLLIMTSN 723
Query: 121 VGSSVIEKGGRKIGFDLDYDEKDSSYNRIKSLVTEELKQYFRPEFLNRLDEMIVFRQLTK 180
VGSSVIEKGGRKIGFDLDYDEKD+SYNRIKSLVTEELKQYFRPEFLNRLDEMIVFRQLTK
Sbjct: 724 VGSSVIEKGGRKIGFDLDYDEKDTSYNRIKSLVTEELKQYFRPEFLNRLDEMIVFRQLTK 783
Query: 181 LEVKEIADIMLKEVFDRLKTKEIDLSVTERFRDRVVEEGYDPSYGARPLRRAIMRLLEDS 240
LEVKEIADIMLKEVFDRLK K+IDL VTE+FRDRVV+EGY+PSYGARPLRRAIMRLLEDS
Sbjct: 784 LEVKEIADIMLKEVFDRLKAKDIDLQVTEKFRDRVVDEGYNPSYGARPLRRAIMRLLEDS 843
Query: 241 MAEKMLAGEIKEGDSVIIDADSDGKVIVLNGSSGAPESLPEAL 283
+AEKMLAGE+KEGDS I+D DS+GKVIVLNG SG PE L AL
Sbjct: 844 LAEKMLAGEVKEGDSAIVDVDSEGKVIVLNGGSGVPEPLAPAL 886
>pir||B35905 endopeptidase Clp (EC 3.4.21.-) ATP-binding chain cd4B, chloroplast
[similarity] - tomato gi|399213|sp|P31542|CLAB_LYCES
ATP-dependent clp protease ATP-binding subunit clpA
homolog CD4B, chloroplast precursor
gi|170435|gb|AAA34161.1| ATP-dependent protease (CD4B)
Length = 923
Score = 515 bits (1327), Expect = e-145
Identities = 263/285 (92%), Positives = 272/285 (95%), Gaps = 1/285 (0%)
Query: 1 SFIFSGPTGVGKSELAKTLASYYFGSEEAMIRLDMSEFMERHTVSKLIGSPPGYVGYTEG 60
SFIFSGPTGVGKSELAK LA+YYFGSEEAMIRLDMSEFMERHTVSKLIGSPPGYVGYTEG
Sbjct: 638 SFIFSGPTGVGKSELAKALAAYYFGSEEAMIRLDMSEFMERHTVSKLIGSPPGYVGYTEG 697
Query: 61 GQLTEAVRRRPYTVVLFDEIEKAHPDVFNMMLQILEDGRLTDSKGRTVDFKNTLLIMTSN 120
GQLTEAVRRRPYTVVLFDEIEKAHPDVFNMMLQILEDGRLTDSKGRTVDFKNTLLIMTSN
Sbjct: 698 GQLTEAVRRRPYTVVLFDEIEKAHPDVFNMMLQILEDGRLTDSKGRTVDFKNTLLIMTSN 757
Query: 121 VGSSVIEKGGRKIGFDLDYDEKDSSYNRIKSLVTEELKQYFRPEFLNRLDEMIVFRQLTK 180
VGSSVIEKGGR+IGFDLD DEKDSSYNRIKSLVTEELKQYFRPEFLNRLDEMIVFRQLTK
Sbjct: 758 VGSSVIEKGGRRIGFDLDLDEKDSSYNRIKSLVTEELKQYFRPEFLNRLDEMIVFRQLTK 817
Query: 181 LEVKEIADIMLKEVFDRLKTKEIDLSVTERFRDRVVEEGYDPSYGARPLRRAIMRLLEDS 240
LEVKEIADIMLKEVF+RLK KEI+L VTERFRDRVV+EGY+PSYGARPLRRAIMRLLEDS
Sbjct: 818 LEVKEIADIMLKEVFERLKVKEIELQVTERFRDRVVDEGYNPSYGARPLRRAIMRLLEDS 877
Query: 241 MAEKMLAGEIKEGDSVIIDADSDGKVIVLNGSSGAP-ESLPEALP 284
MAEKMLA EIKEGDSVI+D DSDG V VLNGSSG P + PE +P
Sbjct: 878 MAEKMLANEIKEGDSVIVDVDSDGNVTVLNGSSGTPSDPAPEPIP 922
>pir||A35905 endopeptidase Clp (EC 3.4.21.-) ATP-binding chain cd4A, chloroplast
[similarity] - tomato gi|399212|sp|P31541|CLAA_LYCES
ATP-dependent clp protease ATP-binding subunit clpA
homolog CD4A, chloroplast precursor
gi|170433|gb|AAA34160.1| ATP-dependent protease (CD4A)
Length = 926
Score = 515 bits (1326), Expect = e-145
Identities = 263/284 (92%), Positives = 274/284 (95%), Gaps = 1/284 (0%)
Query: 1 SFIFSGPTGVGKSELAKTLASYYFGSEEAMIRLDMSEFMERHTVSKLIGSPPGYVGYTEG 60
SFIFSGPTGVGKSELAK+LA+YYFGSEEAMIRLDMSEFMERHTVSKLIGSPPGYVGYTEG
Sbjct: 641 SFIFSGPTGVGKSELAKSLATYYFGSEEAMIRLDMSEFMERHTVSKLIGSPPGYVGYTEG 700
Query: 61 GQLTEAVRRRPYTVVLFDEIEKAHPDVFNMMLQILEDGRLTDSKGRTVDFKNTLLIMTSN 120
GQLTEAVRRRPYTVVLFDEIEKAHPDVFNMMLQILEDGRLTDSKGRTVDFKNTLLIMTSN
Sbjct: 701 GQLTEAVRRRPYTVVLFDEIEKAHPDVFNMMLQILEDGRLTDSKGRTVDFKNTLLIMTSN 760
Query: 121 VGSSVIEKGGRKIGFDLDYDEKDSSYNRIKSLVTEELKQYFRPEFLNRLDEMIVFRQLTK 180
VGSSVIEKGGR+IGFDLD+DEKDSSYNRIKSLVTEELKQYFRPEFLNRL EMIVFRQLTK
Sbjct: 761 VGSSVIEKGGRRIGFDLDFDEKDSSYNRIKSLVTEELKQYFRPEFLNRLSEMIVFRQLTK 820
Query: 181 LEVKEIADIMLKEVFDRLKTKEIDLSVTERFRDRVVEEGYDPSYGARPLRRAIMRLLEDS 240
LEVKEIADIMLKEVF RLK KEI+L VTERFRDRVV+EGY+PSYGARPLRRAIMRLLEDS
Sbjct: 821 LEVKEIADIMLKEVFVRLKNKEIELQVTERFRDRVVDEGYNPSYGARPLRRAIMRLLEDS 880
Query: 241 MAEKMLAGEIKEGDSVIIDADSDGKVIVLNGSSGAP-ESLPEAL 283
MAEKMLAGEIKEGDSVI+D DSDG V VLNG+SGAP +S PE +
Sbjct: 881 MAEKMLAGEIKEGDSVIVDVDSDGNVTVLNGTSGAPSDSAPEPI 924
>dbj|BAB08738.1| ATP-dependent Clp protease, ATP-binding subunit [Arabidopsis
thaliana] gi|20856956|gb|AAM26692.1| AT5g50920/K3K7_7
[Arabidopsis thaliana] gi|18423214|ref|NP_568746.1|
ATP-dependent Clp protease ATP-binding subunit / ClpC
[Arabidopsis thaliana]
Length = 929
Score = 506 bits (1304), Expect = e-142
Identities = 258/288 (89%), Positives = 272/288 (93%), Gaps = 4/288 (1%)
Query: 1 SFIFSGPTGVGKSELAKTLASYYFGSEEAMIRLDMSEFMERHTVSKLIGSPPGYVGYTEG 60
SFIFSGPTGVGKSELAK LA+YYFGSEEAMIRLDMSEFMERHTVSKLIGSPPGYVGYTEG
Sbjct: 640 SFIFSGPTGVGKSELAKALAAYYFGSEEAMIRLDMSEFMERHTVSKLIGSPPGYVGYTEG 699
Query: 61 GQLTEAVRRRPYTVVLFDEIEKAHPDVFNMMLQILEDGRLTDSKGRTVDFKNTLLIMTSN 120
GQLTEAVRRRPYTVVLFDEIEKAHPDVFNMMLQILEDGRLTDSKGRTVDFKNTLLIMTSN
Sbjct: 700 GQLTEAVRRRPYTVVLFDEIEKAHPDVFNMMLQILEDGRLTDSKGRTVDFKNTLLIMTSN 759
Query: 121 VGSSVIEKGGRKIGFDLDYDEKDSSYNRIKSLVTEELKQYFRPEFLNRLDEMIVFRQLTK 180
VGSSVIEKGGR+IGFDLDYDEKDSSYNRIKSLVTEELKQYFRPEFLNRLDEMIVFRQLTK
Sbjct: 760 VGSSVIEKGGRRIGFDLDYDEKDSSYNRIKSLVTEELKQYFRPEFLNRLDEMIVFRQLTK 819
Query: 181 LEVKEIADIMLKEVFDRLKTKEIDLSVTERFRDRVVEEGYDPSYGARPLRRAIMRLLEDS 240
LEVKEIADI+LKEVF+RLK KEI+L VTERF++RVV+EGY+PSYGARPLRRAIMRLLEDS
Sbjct: 820 LEVKEIADILLKEVFERLKKKEIELQVTERFKERVVDEGYNPSYGARPLRRAIMRLLEDS 879
Query: 241 MAEKMLAGEIKEGDSVIIDADSDGKVIVLNGSSGAP----ESLPEALP 284
MAEKMLA EIKEGDSVI+D D++G V VLNG SG P E ++LP
Sbjct: 880 MAEKMLAREIKEGDSVIVDVDAEGNVTVLNGGSGTPTTSLEEQEDSLP 927
>gb|AAC04687.1| ClpC [Arabidopsis thaliana] gi|25289891|pir||T52292 endopeptidase
Clp (EC 3.4.21.92) ATP-binding chain C, chloroplast
[imported] - Arabidopsis thaliana
Length = 928
Score = 500 bits (1288), Expect = e-140
Identities = 256/288 (88%), Positives = 270/288 (92%), Gaps = 4/288 (1%)
Query: 1 SFIFSGPTGVGKSELAKTLASYYFGSEEAMIRLDMSEFMERHTVSKLIGSPPGYVGYTEG 60
SFIFSGPTGVGKSELAK LA+YYFGSEEAMIRLDMSEFMERHTVS LIGS PGYVGYTEG
Sbjct: 639 SFIFSGPTGVGKSELAKALAAYYFGSEEAMIRLDMSEFMERHTVSTLIGSLPGYVGYTEG 698
Query: 61 GQLTEAVRRRPYTVVLFDEIEKAHPDVFNMMLQILEDGRLTDSKGRTVDFKNTLLIMTSN 120
GQLTEAVRRRPYTVVLFDEIEKAHPDVFNMMLQILEDGRLTDSKGRTVDFKNTLLIMTSN
Sbjct: 699 GQLTEAVRRRPYTVVLFDEIEKAHPDVFNMMLQILEDGRLTDSKGRTVDFKNTLLIMTSN 758
Query: 121 VGSSVIEKGGRKIGFDLDYDEKDSSYNRIKSLVTEELKQYFRPEFLNRLDEMIVFRQLTK 180
VGSSVIEKGGR+IGFDLDYDEKDSSYNRIKSLVTEELKQYFRPEFLNRLDEMIVFRQLTK
Sbjct: 759 VGSSVIEKGGRRIGFDLDYDEKDSSYNRIKSLVTEELKQYFRPEFLNRLDEMIVFRQLTK 818
Query: 181 LEVKEIADIMLKEVFDRLKTKEIDLSVTERFRDRVVEEGYDPSYGARPLRRAIMRLLEDS 240
LEVKEIADI+LKEVF+RLK KEI+L VTERF++RVV+EGY+PSYGARPLRRAIMRLLEDS
Sbjct: 819 LEVKEIADILLKEVFERLKKKEIELQVTERFKERVVDEGYNPSYGARPLRRAIMRLLEDS 878
Query: 241 MAEKMLAGEIKEGDSVIIDADSDGKVIVLNGSSGAP----ESLPEALP 284
MAEKMLA EIKEGDSVI+D D++G V VLNG SG P E ++LP
Sbjct: 879 MAEKMLAREIKEGDSVIVDVDAEGNVTVLNGGSGTPTTSLEEQEDSLP 926
>emb|CAB87915.1| AtClpC [Arabidopsis thaliana] gi|18408722|ref|NP_566912.1|
ATP-dependent Clp protease ATP-binding subunit (ClpC)
[Arabidopsis thaliana] gi|11265212|pir||T49283 AtClpC -
Arabidopsis thaliana
Length = 952
Score = 494 bits (1272), Expect = e-138
Identities = 250/290 (86%), Positives = 273/290 (93%), Gaps = 6/290 (2%)
Query: 1 SFIFSGPTGVGKSELAKTLASYYFGSEEAMIRLDMSEFMERHTVSKLIGSPPGYVGYTEG 60
SFIFSGPTGVGKSELAK LA+YYFGSEEAMIRLDMSEFMERHTVSKLIGSPPGYVGYTEG
Sbjct: 661 SFIFSGPTGVGKSELAKALAAYYFGSEEAMIRLDMSEFMERHTVSKLIGSPPGYVGYTEG 720
Query: 61 GQLTEAVRRRPYTVVLFDEIEKAHPDVFNMMLQILEDGRLTDSKGRTVDFKNTLLIMTSN 120
GQLTEAVRRRPYT+VLFDEIEKAHPDVFNMMLQILEDGRLTDSKGRTVDFKNTLLIMTSN
Sbjct: 721 GQLTEAVRRRPYTLVLFDEIEKAHPDVFNMMLQILEDGRLTDSKGRTVDFKNTLLIMTSN 780
Query: 121 VGSSVIEKGGRKIGFDLDYDEKDSSYNRIKSLVTEELKQYFRPEFLNRLDEMIVFRQLTK 180
VGSSVIEKGGR+IGFDLD+DEKDSSYNRIKSLVTEELKQYFRPEFLNRLDEMIVFRQLTK
Sbjct: 781 VGSSVIEKGGRRIGFDLDHDEKDSSYNRIKSLVTEELKQYFRPEFLNRLDEMIVFRQLTK 840
Query: 181 LEVKEIADIMLKEVFDRLKTKEIDLSVTERFRDRVVEEGYDPSYGARPLRRAIMRLLEDS 240
LEVKEIADIMLKEV RL+ KEI+L VTERF++RVV+EG+DPSYGARPLRRAIMRLLEDS
Sbjct: 841 LEVKEIADIMLKEVVARLEVKEIELQVTERFKERVVDEGFDPSYGARPLRRAIMRLLEDS 900
Query: 241 MAEKMLAGEIKEGDSVIIDADSDGKVIVLNGSSG------APESLPEALP 284
MAEKML+ +IKEGDSVI+D D++G V+VL+G++G A E++ + +P
Sbjct: 901 MAEKMLSRDIKEGDSVIVDVDAEGSVVVLSGTTGRVGGFAAEEAMEDPIP 950
>dbj|BAA82062.1| AtClpC [Arabidopsis thaliana] gi|25289890|pir||T52456 endopeptidase
Clp ATP-binding chain C [imported] - Arabidopsis
thaliana
Length = 952
Score = 494 bits (1272), Expect = e-138
Identities = 250/290 (86%), Positives = 273/290 (93%), Gaps = 6/290 (2%)
Query: 1 SFIFSGPTGVGKSELAKTLASYYFGSEEAMIRLDMSEFMERHTVSKLIGSPPGYVGYTEG 60
SFIFSGPTGVGKSELAK LA+YYFGSEEAMIRLDMSEFMERHTVSKLIGSPPGYVGYTEG
Sbjct: 661 SFIFSGPTGVGKSELAKALAAYYFGSEEAMIRLDMSEFMERHTVSKLIGSPPGYVGYTEG 720
Query: 61 GQLTEAVRRRPYTVVLFDEIEKAHPDVFNMMLQILEDGRLTDSKGRTVDFKNTLLIMTSN 120
GQLTEAVRRRPYT+VLFDEIEKAHPDVFNMMLQILEDGRLTDSKGRTVDFKNTLLIMTSN
Sbjct: 721 GQLTEAVRRRPYTLVLFDEIEKAHPDVFNMMLQILEDGRLTDSKGRTVDFKNTLLIMTSN 780
Query: 121 VGSSVIEKGGRKIGFDLDYDEKDSSYNRIKSLVTEELKQYFRPEFLNRLDEMIVFRQLTK 180
VGSSVIEKGGR+IGFDLD+DEKDSSYNRIKSLVTEELKQYFRPEFLNRLDEMIVFRQLTK
Sbjct: 781 VGSSVIEKGGRRIGFDLDHDEKDSSYNRIKSLVTEELKQYFRPEFLNRLDEMIVFRQLTK 840
Query: 181 LEVKEIADIMLKEVFDRLKTKEIDLSVTERFRDRVVEEGYDPSYGARPLRRAIMRLLEDS 240
LEVKEIADIMLKEV RL+ KEI+L VTERF++RVV+EG+DPSYGARPLRRAIMRLLEDS
Sbjct: 841 LEVKEIADIMLKEVVARLEVKEIELQVTERFKERVVDEGFDPSYGARPLRRAIMRLLEDS 900
Query: 241 MAEKMLAGEIKEGDSVIIDADSDGKVIVLNGSSG------APESLPEALP 284
MAEKML+ +IKEGDSVI+D D++G V+VL+G++G A E++ + +P
Sbjct: 901 MAEKMLSRDIKEGDSVIVDVDAEGSVVVLSGTTGRVGGFAAEEAMEDPIP 950
>emb|CAA53077.1| clpA [Brassica napus] gi|1168972|sp|P46523|CLPA_BRANA ATP-dependent
clp protease ATP-binding subunit clpA homolog,
chloroplast precursor gi|480969|pir||S37557
endopeptidase Clp ATP-binding chain A, chloroplast -
rape (fragment)
Length = 874
Score = 483 bits (1243), Expect = e-135
Identities = 248/288 (86%), Positives = 267/288 (92%), Gaps = 5/288 (1%)
Query: 1 SFIFSGPTGVGKSELAKTLASYYFGSEEAMIRLDMSEFMERHTVSKLIGSPPGYVGYTEG 60
SFIF GPTGVGKSELAK LA+YYFG EEAMIRLDMSEFMERHTVSKLIGSPPGYVGYTE
Sbjct: 586 SFIFFGPTGVGKSELAKALAAYYFGCEEAMIRLDMSEFMERHTVSKLIGSPPGYVGYTEP 645
Query: 61 GQLTEAVRRRPYTVVLFDEIEKAHPDVFNMMLQILEDGRLTDSKGRTVDFKNTLLIMTSN 120
QLTEAVRRRPYTVVLFDEIEKAHPDVFNMMLQILEDGRLT+SKGRTVDFKNTLLIMTSN
Sbjct: 646 PQLTEAVRRRPYTVVLFDEIEKAHPDVFNMMLQILEDGRLTNSKGRTVDFKNTLLIMTSN 705
Query: 121 VGSSVIEKGGRKIGFDLDYDEKDSSYNRIKSLVTEELKQYFRPEFLNRLDEMIVFRQLTK 180
VGSSVIEKGGR+IGFDLDY EKDSSYNRIKSLVT+ELKQYFRPEFLNRLDEMI+FRQLTK
Sbjct: 706 VGSSVIEKGGRRIGFDLDY-EKDSSYNRIKSLVTQELKQYFRPEFLNRLDEMILFRQLTK 764
Query: 181 LEVKEIADIMLKEVFDRLKTKEIDLSVTERFRDRVVEEGYDPSYGARPLRRAIMRLLEDS 240
LEVKEIADI+L+E+F+RLK KE++L VTERF++RVV+EGY+PSYGARPLRRAIMRLLEDS
Sbjct: 765 LEVKEIADILLQELFERLKKKEVELQVTERFKERVVDEGYNPSYGARPLRRAIMRLLEDS 824
Query: 241 MAEKMLAGEIKEGDSVIIDADSDGKVIVLNGSSGAP----ESLPEALP 284
M EKMLA EIKEGDSVI+D DS+GKV VLNG SG P E ++LP
Sbjct: 825 MEEKMLAREIKEGDSVIVDVDSEGKVTVLNGGSGTPTTSLEEQEDSLP 872
>gb|AAD02267.1| ClpC protease [Spinacia oleracea]
Length = 891
Score = 468 bits (1204), Expect = e-131
Identities = 238/251 (94%), Positives = 244/251 (96%)
Query: 1 SFIFSGPTGVGKSELAKTLASYYFGSEEAMIRLDMSEFMERHTVSKLIGSPPGYVGYTEG 60
SFIFSGPTGVGKSELAK LA+YYFGSEEAMIRLDMSEFMERHTVSKLIGSPPGYVGYTEG
Sbjct: 637 SFIFSGPTGVGKSELAKALAAYYFGSEEAMIRLDMSEFMERHTVSKLIGSPPGYVGYTEG 696
Query: 61 GQLTEAVRRRPYTVVLFDEIEKAHPDVFNMMLQILEDGRLTDSKGRTVDFKNTLLIMTSN 120
GQLTEAVRRRPYTVVLFDEIEKAHPDVFNMMLQILEDGRLTDSKGRT DFKNTLLIMTSN
Sbjct: 697 GQLTEAVRRRPYTVVLFDEIEKAHPDVFNMMLQILEDGRLTDSKGRTADFKNTLLIMTSN 756
Query: 121 VGSSVIEKGGRKIGFDLDYDEKDSSYNRIKSLVTEELKQYFRPEFLNRLDEMIVFRQLTK 180
VGSSVIEKGGR+IGFDLDYDEKDSSYNRIKSLVTEELKQYFRPEFLNRLDEMIVFRQLTK
Sbjct: 757 VGSSVIEKGGRRIGFDLDYDEKDSSYNRIKSLVTEELKQYFRPEFLNRLDEMIVFRQLTK 816
Query: 181 LEVKEIADIMLKEVFDRLKTKEIDLSVTERFRDRVVEEGYDPSYGARPLRRAIMRLLEDS 240
LEVKEIADIMLKEVF RLK KEI+L VTERFRDRVV+EGY+PSYGARPLRRAIMRLLEDS
Sbjct: 817 LEVKEIADIMLKEVFGRLKNKEIELQVTERFRDRVVDEGYNPSYGARPLRRAIMRLLEDS 876
Query: 241 MAEKMLAGEIK 251
MAEKMLA + K
Sbjct: 877 MAEKMLARKSK 887
>ref|YP_063564.1| Clp protease ATP binding subunit [Gracilaria tenuistipitata var.
liui] gi|50657654|gb|AAT79639.1| Clp protease ATP
binding subunit [Gracilaria tenuistipitata var. liui]
Length = 823
Score = 433 bits (1114), Expect = e-120
Identities = 208/271 (76%), Positives = 249/271 (91%)
Query: 1 SFIFSGPTGVGKSELAKTLASYYFGSEEAMIRLDMSEFMERHTVSKLIGSPPGYVGYTEG 60
SFIFSGPTGVGK+EL K LASY+FGS+EAM+RLDMSE+MERHTVSKLIGSPPGYVGY+EG
Sbjct: 544 SFIFSGPTGVGKTELTKALASYFFGSQEAMVRLDMSEYMERHTVSKLIGSPPGYVGYSEG 603
Query: 61 GQLTEAVRRRPYTVVLFDEIEKAHPDVFNMMLQILEDGRLTDSKGRTVDFKNTLLIMTSN 120
G LTEAVR+RPYTV+LFDEIEKAHPD+FN++LQILEDGRLTD+KGRT+DFKNTLLIMTSN
Sbjct: 604 GYLTEAVRKRPYTVILFDEIEKAHPDIFNLLLQILEDGRLTDAKGRTIDFKNTLLIMTSN 663
Query: 121 VGSSVIEKGGRKIGFDLDYDEKDSSYNRIKSLVTEELKQYFRPEFLNRLDEMIVFRQLTK 180
+GS VIEKGG +GF+L + +S YNRI+SLV EELKQYFRPEFLNRLDE+IVFRQLTK
Sbjct: 664 IGSKVIEKGGGSLGFELGESQTESQYNRIRSLVNEELKQYFRPEFLNRLDEIIVFRQLTK 723
Query: 181 LEVKEIADIMLKEVFDRLKTKEIDLSVTERFRDRVVEEGYDPSYGARPLRRAIMRLLEDS 240
EV+EIA+IML+EVF+R+K +EI+L VTERF++R+V+EGY+PSYGARPLRRA+MRLLEDS
Sbjct: 724 DEVREIAEIMLQEVFNRIKQQEIELEVTERFKNRLVDEGYNPSYGARPLRRAVMRLLEDS 783
Query: 241 MAEKMLAGEIKEGDSVIIDADSDGKVIVLNG 271
+AE++L+G+IK GDS ++D +GKV VL G
Sbjct: 784 LAEEVLSGKIKAGDSAVVDVTDEGKVTVLLG 814
>dbj|BAB74698.1| endopeptidase Clp ATP-binding chain [Nostoc sp. PCC 7120]
gi|17230491|ref|NP_487039.1| endopeptidase Clp
ATP-binding chain [Nostoc sp. PCC 7120]
gi|25289939|pir||AH2180 endopeptidase Clp ATP-binding
chain [imported] - Nostoc sp. (strain PCC 7120)
Length = 839
Score = 432 bits (1112), Expect = e-120
Identities = 218/283 (77%), Positives = 248/283 (87%), Gaps = 2/283 (0%)
Query: 1 SFIFSGPTGVGKSELAKTLASYYFGSEEAMIRLDMSEFMERHTVSKLIGSPPGYVGYTEG 60
SF+FSGPTGVGK+ELAK+LASY+FGSEEAMIRLDMSE+MERHTVSKLIGSPPGYVGY EG
Sbjct: 557 SFVFSGPTGVGKTELAKSLASYFFGSEEAMIRLDMSEYMERHTVSKLIGSPPGYVGYNEG 616
Query: 61 GQLTEAVRRRPYTVVLFDEIEKAHPDVFNMMLQILEDGRLTDSKGRTVDFKNTLLIMTSN 120
GQLTEAVRRRPYTVVLFDEIEKAHPDVFNM+LQILEDGRLTD+KGRTVDFKNTLLI+TSN
Sbjct: 617 GQLTEAVRRRPYTVVLFDEIEKAHPDVFNMLLQILEDGRLTDAKGRTVDFKNTLLILTSN 676
Query: 121 VGSSVIEKGGRKIGFDLDYDEKDSSYNRIKSLVTEELKQYFRPEFLNRLDEMIVFRQLTK 180
+GS VIEKGG IGF+ D+ ++ YNRI+SLV EELKQYFRPEFLNRLDE+IVFRQL+K
Sbjct: 677 IGSKVIEKGGGGIGFEFSEDQTETQYNRIRSLVNEELKQYFRPEFLNRLDEIIVFRQLSK 736
Query: 181 LEVKEIADIMLKEVFDRLKTKEIDLSVTERFRDRVVEEGYDPSYGARPLRRAIMRLLEDS 240
LEV EIADIMLKEVF RL K I L V++RF+ R++EEGY PSYGARPLRRAIMRLLEDS
Sbjct: 737 LEVTEIADIMLKEVFGRLTEKGITLEVSDRFKGRLIEEGYSPSYGARPLRRAIMRLLEDS 796
Query: 241 MAEKMLAGEIKEGDSVIIDADSDGKVIVLNGSSGAPESLPEAL 283
+AE++L+G IK+GD +ID D +G V V S E LP+ +
Sbjct: 797 LAEEILSGRIKDGDVALIDIDENGNVQVT--SQQRRELLPQGV 837
>ref|ZP_00110397.1| COG0542: ATPases with chaperone activity, ATP-binding subunit
[Nostoc punctiforme PCC 73102]
Length = 822
Score = 431 bits (1108), Expect = e-119
Identities = 215/283 (75%), Positives = 249/283 (87%), Gaps = 2/283 (0%)
Query: 1 SFIFSGPTGVGKSELAKTLASYYFGSEEAMIRLDMSEFMERHTVSKLIGSPPGYVGYTEG 60
SF+FSGPTGVGK+ELAK+LA+Y+FGSEEAMIRLDMSE+MERHTVSKLIGSPPGYVGY EG
Sbjct: 541 SFVFSGPTGVGKTELAKSLAAYFFGSEEAMIRLDMSEYMERHTVSKLIGSPPGYVGYNEG 600
Query: 61 GQLTEAVRRRPYTVVLFDEIEKAHPDVFNMMLQILEDGRLTDSKGRTVDFKNTLLIMTSN 120
GQLTEAVRRRPYTVVLFDEIEKAHPDVFNM+LQILEDGRLTD+KGRTVDFKNTLLI+TSN
Sbjct: 601 GQLTEAVRRRPYTVVLFDEIEKAHPDVFNMLLQILEDGRLTDAKGRTVDFKNTLLILTSN 660
Query: 121 VGSSVIEKGGRKIGFDLDYDEKDSSYNRIKSLVTEELKQYFRPEFLNRLDEMIVFRQLTK 180
+GS VIEKGG IGF+ D +S+YNRI+SLV EELKQYFRPEFLNRLDE+IVFRQL+K
Sbjct: 661 IGSKVIEKGGSGIGFEFSEDASESTYNRIRSLVNEELKQYFRPEFLNRLDEIIVFRQLSK 720
Query: 181 LEVKEIADIMLKEVFDRLKTKEIDLSVTERFRDRVVEEGYDPSYGARPLRRAIMRLLEDS 240
EV +IA+IMLKEVF RL K I L VT+RF+DR+++EGY PSYGARPLRRAIMRLLEDS
Sbjct: 721 PEVTQIAEIMLKEVFGRLTEKGITLEVTDRFKDRLIQEGYSPSYGARPLRRAIMRLLEDS 780
Query: 241 MAEKMLAGEIKEGDSVIIDADSDGKVIVLNGSSGAPESLPEAL 283
+AE++L+G IK+GD+ ++D D +G V V S E LP+ +
Sbjct: 781 LAEEILSGRIKDGDTALVDVDENGVVQV--SSQQRRELLPQGV 821
>ref|ZP_00162274.2| COG0542: ATPases with chaperone activity, ATP-binding subunit
[Anabaena variabilis ATCC 29413]
Length = 839
Score = 431 bits (1107), Expect = e-119
Identities = 217/283 (76%), Positives = 247/283 (86%), Gaps = 2/283 (0%)
Query: 1 SFIFSGPTGVGKSELAKTLASYYFGSEEAMIRLDMSEFMERHTVSKLIGSPPGYVGYTEG 60
SF+FSGPTGVGK+ELAK+LASY+FGSEEAMIRLDMSE+MERHTVSKLIGSPPGYVGY EG
Sbjct: 557 SFVFSGPTGVGKTELAKSLASYFFGSEEAMIRLDMSEYMERHTVSKLIGSPPGYVGYNEG 616
Query: 61 GQLTEAVRRRPYTVVLFDEIEKAHPDVFNMMLQILEDGRLTDSKGRTVDFKNTLLIMTSN 120
GQLTEAVRRRPYTVVLFDEIEKAHPDVFNM+LQILEDGRLTD+KGRTVDFKNTLLI+TSN
Sbjct: 617 GQLTEAVRRRPYTVVLFDEIEKAHPDVFNMLLQILEDGRLTDAKGRTVDFKNTLLILTSN 676
Query: 121 VGSSVIEKGGRKIGFDLDYDEKDSSYNRIKSLVTEELKQYFRPEFLNRLDEMIVFRQLTK 180
+GS VIEKGG IGF+ D+ ++ YNRI+SLV EELKQYFRPEFLNRLDE+IVFRQL+K
Sbjct: 677 IGSKVIEKGGGGIGFEFSEDQTETQYNRIRSLVNEELKQYFRPEFLNRLDEIIVFRQLSK 736
Query: 181 LEVKEIADIMLKEVFDRLKTKEIDLSVTERFRDRVVEEGYDPSYGARPLRRAIMRLLEDS 240
EV EIADIMLKEVF RL K I L V++RF+ R++EEGY PSYGARPLRRAIMRLLEDS
Sbjct: 737 AEVTEIADIMLKEVFGRLTEKGITLEVSDRFKGRLIEEGYSPSYGARPLRRAIMRLLEDS 796
Query: 241 MAEKMLAGEIKEGDSVIIDADSDGKVIVLNGSSGAPESLPEAL 283
+AE++L+G IK+GD +ID D +G V V S E LP+ +
Sbjct: 797 LAEEILSGRIKDGDVALIDIDDNGNVQVT--SQQRRELLPQGV 837
>ref|ZP_00325035.1| COG0542: ATPases with chaperone activity, ATP-binding subunit
[Trichodesmium erythraeum IMS101]
Length = 825
Score = 429 bits (1104), Expect = e-119
Identities = 210/271 (77%), Positives = 243/271 (89%)
Query: 1 SFIFSGPTGVGKSELAKTLASYYFGSEEAMIRLDMSEFMERHTVSKLIGSPPGYVGYTEG 60
SF+FSGPTGVGK+EL K LA+Y+FGSEEAMIRLDMSE+MERHTVSKLIGSPPGYVGY EG
Sbjct: 541 SFVFSGPTGVGKTELTKALAAYFFGSEEAMIRLDMSEYMERHTVSKLIGSPPGYVGYNEG 600
Query: 61 GQLTEAVRRRPYTVVLFDEIEKAHPDVFNMMLQILEDGRLTDSKGRTVDFKNTLLIMTSN 120
GQLTEAVRRRPYTVVLFDEIEKAHPDVFNM+LQILEDGRLTD+KGRTVDFKNTL+IMTSN
Sbjct: 601 GQLTEAVRRRPYTVVLFDEIEKAHPDVFNMLLQILEDGRLTDAKGRTVDFKNTLIIMTSN 660
Query: 121 VGSSVIEKGGRKIGFDLDYDEKDSSYNRIKSLVTEELKQYFRPEFLNRLDEMIVFRQLTK 180
+GS VIEKGG +GF+ +E D+ YNRI++LV EELKQYFRPEFLNRLDE+IVFRQLTK
Sbjct: 661 IGSKVIEKGGGGLGFEFSENEADAQYNRIRNLVNEELKQYFRPEFLNRLDEIIVFRQLTK 720
Query: 181 LEVKEIADIMLKEVFDRLKTKEIDLSVTERFRDRVVEEGYDPSYGARPLRRAIMRLLEDS 240
EVKEI+ I+LKEVF RL K I L +T+RF++R+VEEGY+PSYGARPLRRAIMRLLEDS
Sbjct: 721 DEVKEISVILLKEVFSRLTEKGIKLEITDRFQERLVEEGYNPSYGARPLRRAIMRLLEDS 780
Query: 241 MAEKMLAGEIKEGDSVIIDADSDGKVIVLNG 271
+AE++LAG+I EGD+ ++D G++IV G
Sbjct: 781 LAEEILAGKINEGDTAVVDVGESGQIIVSKG 811
>ref|NP_893205.1| ClpC [Prochlorococcus marinus subsp. pastoris str. CCMP1986]
gi|33634221|emb|CAE19547.1| ClpC [Prochlorococcus
marinus subsp. pastoris str. CCMP1986]
Length = 842
Score = 428 bits (1101), Expect = e-119
Identities = 213/269 (79%), Positives = 243/269 (90%), Gaps = 1/269 (0%)
Query: 1 SFIFSGPTGVGKSELAKTLASYYFGSEEAMIRLDMSEFMERHTVSKLIGSPPGYVGYTEG 60
SFIFSGPTGVGK+EL K+LASY+FGSEEAMIRLDMSEFMERHTVSKLIGSPPGYVG+ EG
Sbjct: 558 SFIFSGPTGVGKTELTKSLASYFFGSEEAMIRLDMSEFMERHTVSKLIGSPPGYVGFNEG 617
Query: 61 GQLTEAVRRRPYTVVLFDEIEKAHPDVFNMMLQILEDGRLTDSKGRTVDFKNTLLIMTSN 120
GQLTEAVRRRPYTVVLFDE+EKAHPDVFN++LQ+LEDGRLTDSKGRTVDFKNTLLIMTSN
Sbjct: 618 GQLTEAVRRRPYTVVLFDEVEKAHPDVFNLLLQLLEDGRLTDSKGRTVDFKNTLLIMTSN 677
Query: 121 VGSSVIEKGGRKIGFDLDYDE-KDSSYNRIKSLVTEELKQYFRPEFLNRLDEMIVFRQLT 179
+GS VIEKGG +GF+ D +DS YNRIKSLV EELKQYFRPEFLNRLDE+IVFRQL+
Sbjct: 678 IGSKVIEKGGGGLGFEFSGDSVEDSQYNRIKSLVNEELKQYFRPEFLNRLDEIIVFRQLS 737
Query: 180 KLEVKEIADIMLKEVFDRLKTKEIDLSVTERFRDRVVEEGYDPSYGARPLRRAIMRLLED 239
K EVK+IA+IMLKEVF RL K I L VT+ F++R+VEEGY+P+YGARPLRRA+MRLLED
Sbjct: 738 KNEVKDIAEIMLKEVFSRLNEKGIKLDVTDAFKERLVEEGYNPAYGARPLRRAVMRLLED 797
Query: 240 SMAEKMLAGEIKEGDSVIIDADSDGKVIV 268
S+AE++L+G IK+GD I+D D + KVIV
Sbjct: 798 SLAEEVLSGRIKDGDKAIVDIDENKKVIV 826
>ref|ZP_00514408.1| UvrB/UvrC protein:AAA ATPase, central region:Clp, N terminal:Clp, N
terminal [Crocosphaera watsonii WH 8501]
gi|67857006|gb|EAM52246.1| UvrB/UvrC protein:AAA ATPase,
central region:Clp, N terminal:Clp, N terminal
[Crocosphaera watsonii WH 8501]
Length = 823
Score = 427 bits (1098), Expect = e-118
Identities = 208/276 (75%), Positives = 245/276 (88%)
Query: 1 SFIFSGPTGVGKSELAKTLASYYFGSEEAMIRLDMSEFMERHTVSKLIGSPPGYVGYTEG 60
SF+FSGPTGVGK+EL K+LA+Y+FGSEEAMIRLDMSE+MERHTVSKLIGSPPGYVGY EG
Sbjct: 540 SFVFSGPTGVGKTELTKSLAAYFFGSEEAMIRLDMSEYMERHTVSKLIGSPPGYVGYNEG 599
Query: 61 GQLTEAVRRRPYTVVLFDEIEKAHPDVFNMMLQILEDGRLTDSKGRTVDFKNTLLIMTSN 120
GQLTEAVRRRPYTVVLFDEIEKAHPDVFNM+LQILEDGRLTD+KGRTVDFKNTLLIMTSN
Sbjct: 600 GQLTEAVRRRPYTVVLFDEIEKAHPDVFNMLLQILEDGRLTDAKGRTVDFKNTLLIMTSN 659
Query: 121 VGSSVIEKGGRKIGFDLDYDEKDSSYNRIKSLVTEELKQYFRPEFLNRLDEMIVFRQLTK 180
+GS VIEKGG +GF+ + D+ ++ YNRI++LV EELKQYFRPEFLNRLDE+IVFRQL K
Sbjct: 660 IGSKVIEKGGGGLGFEFEDDQNEAQYNRIRNLVNEELKQYFRPEFLNRLDEIIVFRQLNK 719
Query: 181 LEVKEIADIMLKEVFDRLKTKEIDLSVTERFRDRVVEEGYDPSYGARPLRRAIMRLLEDS 240
EVKEI++I+LKEVF RL KEI L VT++F++R+VEEGY+P+YGARPLRRAIMRLLED
Sbjct: 720 EEVKEISEILLKEVFARLTEKEITLQVTDKFKERLVEEGYNPAYGARPLRRAIMRLLEDV 779
Query: 241 MAEKMLAGEIKEGDSVIIDADSDGKVIVLNGSSGAP 276
+AE++L+G + EGD ++D DGKV V++ P
Sbjct: 780 LAEEILSGRVGEGDVAVVDIGEDGKVQVVSNEKQQP 815
>pir||S71553 endopeptidase Clp (EC 3.4.21.-) ATP-binding chain clpC [similarity]
- Synechococcus sp. (strain PCC 7942)
gi|755163|gb|AAB67745.1| ClpC
Length = 839
Score = 427 bits (1098), Expect = e-118
Identities = 214/284 (75%), Positives = 250/284 (87%), Gaps = 3/284 (1%)
Query: 1 SFIFSGPTGVGKSELAKTLASYYFGSEEAMIRLDMSEFMERHTVSKLIGSPPGYVGYTEG 60
SFIFSGPTGVGK+EL K LA+Y+FGSEEAMIRLDMSE+MERHTVSKLIGSPPGYVGY EG
Sbjct: 557 SFIFSGPTGVGKTELTKALAAYFFGSEEAMIRLDMSEYMERHTVSKLIGSPPGYVGYNEG 616
Query: 61 GQLTEAVRRRPYTVVLFDEIEKAHPDVFNMMLQILEDGRLTDSKGRTVDFKNTLLIMTSN 120
GQLTEAVRRRPYTVVL DEIEKAHPDVFN++LQ+LEDGRLTD+KGRTVDFKNTL+I+TSN
Sbjct: 617 GQLTEAVRRRPYTVVLLDEIEKAHPDVFNLLLQLLEDGRLTDAKGRTVDFKNTLIILTSN 676
Query: 121 VGSSVIEKGGRKIGFDLD-YDEKDSSYNRIKSLVTEELKQYFRPEFLNRLDEMIVFRQLT 179
+GS VIEKGG +GF+ DE ++ YNRI+SLV EELKQYFRPEFLNRLDE+IVFRQL
Sbjct: 677 IGSKVIEKGGGGLGFEFSGVDEAENQYNRIRSLVNEELKQYFRPEFLNRLDEIIVFRQLN 736
Query: 180 KLEVKEIADIMLKEVFDRLKTKEIDLSVTERFRDRVVEEGYDPSYGARPLRRAIMRLLED 239
K EVKEIADIML+EVF R+ K I LSVTE+F+DR+VEEGY+PSYGARPLRRAIMRLLED
Sbjct: 737 KEEVKEIADIMLREVFGRMLEKGISLSVTEKFKDRLVEEGYNPSYGARPLRRAIMRLLED 796
Query: 240 SMAEKMLAGEIKEGDSVIIDADSDGKVIVLNGSSGAPESLPEAL 283
S+AE+ L+G+++EGD+ ++D +GKV VL + E LP+A+
Sbjct: 797 SLAEEFLSGKLREGDTAVVDIGEEGKVQVL--AQEKRELLPQAV 838
>ref|ZP_00163644.2| COG0542: ATPases with chaperone activity, ATP-binding subunit
[Synechococcus elongatus PCC 7942]
Length = 839
Score = 427 bits (1098), Expect = e-118
Identities = 214/284 (75%), Positives = 250/284 (87%), Gaps = 3/284 (1%)
Query: 1 SFIFSGPTGVGKSELAKTLASYYFGSEEAMIRLDMSEFMERHTVSKLIGSPPGYVGYTEG 60
SFIFSGPTGVGK+EL K LA+Y+FGSEEAMIRLDMSE+MERHTVSKLIGSPPGYVGY EG
Sbjct: 557 SFIFSGPTGVGKTELTKALAAYFFGSEEAMIRLDMSEYMERHTVSKLIGSPPGYVGYNEG 616
Query: 61 GQLTEAVRRRPYTVVLFDEIEKAHPDVFNMMLQILEDGRLTDSKGRTVDFKNTLLIMTSN 120
GQLTEAVRRRPYTVVL DEIEKAHPDVFN++LQ+LEDGRLTD+KGRTVDFKNTL+I+TSN
Sbjct: 617 GQLTEAVRRRPYTVVLLDEIEKAHPDVFNLLLQLLEDGRLTDAKGRTVDFKNTLIILTSN 676
Query: 121 VGSSVIEKGGRKIGFDLD-YDEKDSSYNRIKSLVTEELKQYFRPEFLNRLDEMIVFRQLT 179
+GS VIEKGG +GF+ DE ++ YNRI+SLV EELKQYFRPEFLNRLDE+IVFRQL
Sbjct: 677 IGSKVIEKGGGGLGFEFSGVDEAENQYNRIRSLVNEELKQYFRPEFLNRLDEIIVFRQLN 736
Query: 180 KLEVKEIADIMLKEVFDRLKTKEIDLSVTERFRDRVVEEGYDPSYGARPLRRAIMRLLED 239
K EVKEIADIML+EVF R+ K I LSVTE+F+DR+VEEGY+PSYGARPLRRAIMRLLED
Sbjct: 737 KEEVKEIADIMLREVFGRMLEKGISLSVTEKFKDRLVEEGYNPSYGARPLRRAIMRLLED 796
Query: 240 SMAEKMLAGEIKEGDSVIIDADSDGKVIVLNGSSGAPESLPEAL 283
S+AE+ L+G+++EGD+ ++D +GKV VL + E LP+A+
Sbjct: 797 SLAEEFLSGKLREGDTAVVDIGEEGKVQVL--AQEKRELLPQAV 838
>ref|NP_681098.1| ATP-dependent Clp protease regulatory subunit [Thermosynechococcus
elongatus BP-1] gi|22294028|dbj|BAC07860.1|
ATP-dependent Clp protease regulatory subunit
[Thermosynechococcus elongatus BP-1]
Length = 824
Score = 427 bits (1097), Expect = e-118
Identities = 216/284 (76%), Positives = 248/284 (87%), Gaps = 3/284 (1%)
Query: 1 SFIFSGPTGVGKSELAKTLASYYFGSEEAMIRLDMSEFMERHTVSKLIGSPPGYVGYTEG 60
SFIFSGPTGVGK+EL K LA+Y+FGSEEAMIRLDMSE+MERHTVSKLIGSPPGYVGY EG
Sbjct: 542 SFIFSGPTGVGKTELTKALAAYFFGSEEAMIRLDMSEYMERHTVSKLIGSPPGYVGYNEG 601
Query: 61 GQLTEAVRRRPYTVVLFDEIEKAHPDVFNMMLQILEDGRLTDSKGRTVDFKNTLLIMTSN 120
GQLTEAVRRRPYTVVLFDEIEKAHPDVFN++LQILEDGRLTDSKGRTVDFKNTLLIMTSN
Sbjct: 602 GQLTEAVRRRPYTVVLFDEIEKAHPDVFNLLLQILEDGRLTDSKGRTVDFKNTLLIMTSN 661
Query: 121 VGSSVIEKGGRKIGFDL-DYDEKDSSYNRIKSLVTEELKQYFRPEFLNRLDEMIVFRQLT 179
+GS VIEKG +GF+ D +S YNRI+SLV EELKQYFRPEFLNRLDE+IVFRQLT
Sbjct: 662 IGSKVIEKGAAGLGFEFGTEDAAESQYNRIRSLVNEELKQYFRPEFLNRLDEIIVFRQLT 721
Query: 180 KLEVKEIADIMLKEVFDRLKTKEIDLSVTERFRDRVVEEGYDPSYGARPLRRAIMRLLED 239
K EVK+IADI+LKEVF RL K I L VTERF++R+++EGY+PSYGARPLRRAIMRLLED
Sbjct: 722 KDEVKQIADILLKEVFSRLTEKGITLEVTERFKERLIDEGYNPSYGARPLRRAIMRLLED 781
Query: 240 SMAEKMLAGEIKEGDSVIIDADSDGKVIVLNGSSGAPESLPEAL 283
++AE+ML+G I+EGD+ +ID D G+V + + E LP+A+
Sbjct: 782 TLAEEMLSGRIREGDTALIDVDESGQVKI--QAQPRRELLPQAV 823
Database: nr
Posted date: Jul 5, 2005 12:34 AM
Number of letters in database: 863,360,394
Number of sequences in database: 2,540,612
Lambda K H
0.317 0.137 0.375
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 463,303,125
Number of Sequences: 2540612
Number of extensions: 18623662
Number of successful extensions: 77408
Number of sequences better than 10.0: 1419
Number of HSP's better than 10.0 without gapping: 986
Number of HSP's successfully gapped in prelim test: 433
Number of HSP's that attempted gapping in prelim test: 75060
Number of HSP's gapped (non-prelim): 1710
length of query: 284
length of database: 863,360,394
effective HSP length: 126
effective length of query: 158
effective length of database: 543,243,282
effective search space: 85832438556
effective search space used: 85832438556
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 74 (33.1 bits)
Lotus: description of TM0266.20