BLAST2 result
BLASTP 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TM0265.4
(822 letters)
Database: nr
2,540,612 sequences; 863,360,394 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_475041.1| OSJNBa0042F21.11 [Oryza sativa (japonica cultiv... 298 6e-79
gb|AAX92771.1| Transposable element protein, putative [Oryza sat... 288 4e-76
gb|AAF24529.1| F7F22.15 [Arabidopsis thaliana] 281 5e-74
emb|CAB81134.1| putative athila transposon protein [Arabidopsis ... 281 8e-74
gb|AAF24531.1| F7F22.17 [Arabidopsis thaliana] 275 4e-72
gb|AAP51916.1| putative polyprotein [Oryza sativa (japonica cult... 271 8e-71
ref|NP_909568.1| hypothetical protein [Oryza sativa] gi|14018108... 237 1e-60
gb|AAP44598.1| putative retrotransposon gag protein [Oryza sativ... 233 3e-59
gb|AAT76351.1| hypothetical protein [Oryza sativa (japonica cult... 215 4e-54
gb|AAX95303.1| hypothetical protein [Oryza sativa (japonica cult... 207 1e-51
gb|AAX92872.1| Transposable element protein, putative [Oryza sat... 207 1e-51
emb|CAE75955.1| B1159F04.18 [Oryza sativa (japonica cultivar-gro... 204 7e-51
pir||T12086 hypothetical protein - fava bean (fragment) gi|25222... 187 9e-46
gb|AAF79809.1| T32E20.9 [Arabidopsis thaliana] 173 2e-41
gb|AAF19229.1| Similar to Athila ORF 1 [Arabidopsis thaliana] gi... 173 2e-41
gb|AAN04521.1| Hypothetical protein with similarity to putative ... 165 6e-39
gb|AAD19780.2| hypothetical protein [Arabidopsis thaliana] 163 2e-38
gb|AAP53442.1| hypothetical protein similar to putative retroele... 161 7e-38
gb|AAG52027.1| Athila ORF 1, putative; 43045-40843 [Arabidopsis ... 158 6e-37
gb|AAP52811.1| hypothetical protein similar to putative retroele... 154 9e-36
>ref|XP_475041.1| OSJNBa0042F21.11 [Oryza sativa (japonica cultivar-group)]
gi|38347309|emb|CAE02304.2| OSJNBa0042F21.11 [Oryza
sativa (japonica cultivar-group)]
Length = 920
Score = 298 bits (762), Expect = 6e-79
Identities = 211/674 (31%), Positives = 334/674 (49%), Gaps = 61/674 (9%)
Query: 189 SQYGGGSSEDPHAHMERFIRNCNTYRVSNVSSEAIRLSLFPFSLKDAAEEWLNSQPQGSI 248
S + G +ED +AH+ +F+ C+ Y + VS +A+RL LFPFSL A++W + +I
Sbjct: 266 SPFCGKPNEDANAHLLQFLEICSMYTIKGVSPDAVRLRLFPFSLLRRAKQWFYANC-AAI 324
Query: 249 TTWEDLAEKFTTRFFPRALLRKLKKDIMNFVQSAEENLYEAWERFKKLLRKCPQHNLTQA 308
TW+ + F ++FFP L+ I F Q+ +E++ EAWER ++ + CP H +
Sbjct: 325 NTWDKCSTSFLSKFFPIGKTNALRGRISRFQQTRDESIPEAWERLQEYVAACPHHGMDDW 384
Query: 309 ELVATFYDGLEYSWRFGLDTASSGEFDALPPQAGYDLIEKMAARAMNSENDRQTRRRMFE 368
++ FY+GL R LD A+ G F + Q +LIEKM + S+ QTR+R
Sbjct: 385 LILQNFYNGLTLMSRDHLDAAAGGAFFSKTVQGAVELIEKMVSNTGWSKERLQTRQRGMH 444
Query: 369 FEAYDKLLASNKQISEKVAEIQNHIKVTK-LVGASVAKVECVTRGGPNFS-NSCTMTN-- 424
+LLA+ + K + +H K + V A + V C GG S N C T+
Sbjct: 445 TVKETELLAAKLDLLMKC--LDDHEKRPQGTVKALDSHVTCEVCGGTGHSGNDCLETHEE 502
Query: 425 ------------QGFQGQSS------------------GLFQQVQEQVDVKDGGKKSL-- 452
QG +G + L V Q D +K L
Sbjct: 503 AMYMGKNNEYRPQGGEGWNQPRPYYPGGNNNGNFSNQPSLMDLVFAQAKTTDALRKKLAA 562
Query: 453 -EELLESFINRME---SNYKIQDAAIKNLKSQFGQLAKQMAKIPQGKF--SPNALILSKH 506
+++LE+ +++ S ++ Q + K +++Q QLA + G+ P++ I
Sbjct: 563 NDKILENINVKLDGFASAFQNQLSFNKMIETQLAQLASLVPANESGRIPGQPDSSI---- 618
Query: 507 ENADDVTTRSGRVLHESKKQVEGEKNDKVEEKDEGVIKKRVSEPVKARVLSTPSPELSKI 566
EN +TTR G+ + N +E + +P K L +
Sbjct: 619 ENVKAITTRGGKSTRDPPYPNPAGTNGMSKETPSTDSDDKEIQPDKTVPQEYCDTRL--L 676
Query: 567 PFPKALANKNLDKQFSKFLEVFKKLHINIPFSEALEQMLIYAKFMRDILSKKRKLSEVDE 626
PFP+ ++DKQF+ F+EV +K+HIN+P +A+ Q+ YA++++DIL+ KR L E
Sbjct: 677 PFPQQSRKPSVDKQFACFVEVIQKIHINVPLLDAM-QVPTYARYLKDILNNKRPLPTT-E 734
Query: 627 TVMLTEECSAILQRKIPRKRRDPGSFTIPVEIEGLSKVDALCDLGASINLMPLSMFRRLN 686
V LTE CS ++ K+P K++DPG TI I ALCDLGAS+++MP +F +LN
Sbjct: 735 VVKLTEHCSNLILHKLPEKKKDPGCPTITCSIGAQQFDQALCDLGASVSVMPKDVFDKLN 794
Query: 687 LGEVTPTMLSLQMADRSLKTPYGIIEDVMVKVDKYVFPIDFVVLDMEEDAKIPLILGRPF 746
+ PT + LQ+AD S+ P GI EDV K+ + P+DFVVLDM+ + PLILGRPF
Sbjct: 795 FTVLAPTPMRLQLADSSVHYPVGIAEDVPAKIRDFFIPVDFVVLDMDTGKETPLILGRPF 854
Query: 747 LATARAKIDVDKGQLILRVGKDKVRFSVFNPNLQANLNDGFFCDMIQSLSRSSKETPKVS 806
L+TA A IDV G + + +F F P ++ C M++ R + + +V
Sbjct: 855 LSTAGANIDVGTGSIRFHTNGKEEKFE-FQPRMEQ-------CTMVRIKYRPNPQNIQVV 906
Query: 807 EKDVGLNQALIKLV 820
+ + +L++ +
Sbjct: 907 DVEPPKTDSLVRFM 920
>gb|AAX92771.1| Transposable element protein, putative [Oryza sativa (japonica
cultivar-group)]
Length = 689
Score = 288 bits (738), Expect = 4e-76
Identities = 203/659 (30%), Positives = 335/659 (50%), Gaps = 78/659 (11%)
Query: 175 NFKLRPAFINLVSQSQYGGGSSEDPHAHMERFIRNCNTYRVSNVSSEAIRLSLFPFSLKD 234
+F L+ + I + S + G +ED +AH+++F+ C+TY + VS +A+RL LFPFSL
Sbjct: 29 DFDLKSSLIMMAQASLFCGKPNEDANAHLQQFLEICSTYTIKGVSPDAVRLRLFPFSLLG 88
Query: 235 AAEEWLNSQPQGSITTWEDLAEKFTTRFFPRALLRKLKKDIMNFVQSAEENLYEAWERFK 294
A++W + ++ TW+ + F ++FFP L+ I +F Q+ +E++ EAWER +
Sbjct: 89 RAKQWFYAN-HAAVNTWDKCSTAFLSKFFPMGKTNALRGRISSFQQTRDESIPEAWERLQ 147
Query: 295 KLLRKCPQHNLTQAELVATFYDGLEYSWRFGLDTASSGEFDALPPQAGYDLIEKMAARAM 354
F++GL R LDT + G F + Q +LIEKM +
Sbjct: 148 DY----------------NFHNGLTPMSRNHLDTTTGGAFFSKTVQGAVELIEKMVSNMG 191
Query: 355 NSENDRQTRRRMFEFEAYDKLLASNKQISEKVAEIQNHIKVTK-LVGASVAKVECVTRGG 413
SE QTR+R +L+A+ ++ K + +H K + V A + V C GG
Sbjct: 192 WSEERLQTRQRGMHTVKETELVAAKLELLMK--HLDDHEKRPQGTVKALDSHVTCEVCGG 249
Query: 414 P-NFSNSCTMTNQG--FQGQSSG----LFQQVQEQVDVKDGGKKSLEELLESFINRMESN 466
+ N C T + + G ++G ++ E ++VK L+ +F N++ N
Sbjct: 250 TGHLGNDCPETREEAMYMGNNNGKKLAANDKILENINVK------LDGFASAFQNQLSYN 303
Query: 467 YKIQDAAIKNLKSQFGQLAKQMAKIPQGKFS-----PNALILSKHENADDVTTRSGRVLH 521
I+ QLA+ + +P + P++ I EN +T G +
Sbjct: 304 KMIET-----------QLARLQSLVPTNETGRIPGQPDSSI----ENVKAITMTGGTI-G 347
Query: 522 ESKKQVEGEKNDKVEEKDEGVIKKRVSEPVKARVLSTPSPELSKIPFPKALANKNLDKQF 581
SK+ + K + ++ V + E R+L PFP+ + ++D+QF
Sbjct: 348 MSKEAPSNDSAGKEIQPEKTVPQ----EYCNTRLL----------PFPQRMRKPSVDEQF 393
Query: 582 SKFLEVFKKLHINIPFSEALEQMLIYAKFMRDILSKKRKLSEVDETVMLTEECSAILQRK 641
++F+EV +K+HIN+P +A+ Q+ YA +++DIL+ KR L + E V LTE+CS ++ K
Sbjct: 394 ARFVEVIQKIHINVPLLDAM-QVPTYAHYLKDILNNKRPLPTM-EVVKLTEQCSNVILHK 451
Query: 642 IPRKRRDPGSFTIPVEIEGLSKVDALCDLGASINLMPLSMFRRLNLGEVTPTMLSLQMAD 701
+P K++ PG TI I ALCDLGAS+++MP +F +L + PT + LQ+AD
Sbjct: 452 LPEKKKYPGCPTITCSIRAQQFDQALCDLGASVSVMPKDVFDKLKFTVLAPTPMRLQLAD 511
Query: 702 RSLKTPYGIIEDVMVKVDKYVFPIDFVVLDMEEDAKIPLILGRPFLATARAKIDVDKGQL 761
S++ P GI EDV VK+ + P+DFVVLDM+ + PLILGRPFL+T A ID+ G +
Sbjct: 512 SSVRYPAGIAEDVPVKIRDFFTPVDFVVLDMDTGKETPLILGRPFLSTGGANIDMGTGSI 571
Query: 762 ILRVGKDKVRFSVFNPNLQANLNDGFFCDMIQSLSRSSKETPKVSEKDVGLNQALIKLV 820
+ + + RF F P + C M++ R + + +V E + +L+K +
Sbjct: 572 HFHINRKEERFE-FQPRTEQ-------CSMVKIKYRPNPQNIQVVEVEPPKKDSLVKFM 622
>gb|AAF24529.1| F7F22.15 [Arabidopsis thaliana]
Length = 1862
Score = 281 bits (720), Expect = 5e-74
Identities = 206/673 (30%), Positives = 331/673 (48%), Gaps = 92/673 (13%)
Query: 189 SQYGGGSSEDPHAHMERFIRNCNTYRVSNVSSEAIRLSLFPFSLKDAAEEWLNSQPQGSI 248
+++ G EDP H++ F R CN +++ VS + +L LFPFSL D A W + P SI
Sbjct: 170 NKFHGLPMEDPLDHLDEFDRLCNLTKINGVSEDGFKLRLFPFSLGDKAHIWEKNLPHDSI 229
Query: 249 TTWEDLAEKFTTRFFPRALLRKLKKDIMNFVQSAEENLYEAWERFKKLLRKCPQHNLTQA 308
TTW+D + F ++FF A +L+ +I F Q E+ EAWERFK +C H T+A
Sbjct: 230 TTWDDCKKAFLSKFFSNARTARLRNEISGFSQKTGESFCEAWERFKGYTNQCSHHGFTKA 289
Query: 309 ELVATFYDGLEYSWRFGLDTASSGEFDALPPQAGYDLIEKMAARAMN-SENDRQTRRRMF 367
L++T Y G+ R LDTAS+G F + G++L+E +A N +EN +T R
Sbjct: 290 SLLSTLYRGVLPRIRMLLDTASNGNFQNKDVEEGWELVENLAQSNGNYNENCDRTVRGTA 349
Query: 368 EFEAYDKLLASNKQISEKVAEI--QNHIKVTKLVGASVAKVECVTRGGPNFSNSCTMTNQ 425
+ + DK K +++K+ I H V LV
Sbjct: 350 DSD--DKHRKEIKALNDKLDRILLSQHKHVHFLVD------------------------- 382
Query: 426 GFQGQSSGLFQQVQEQVDVKDGGKKSLEELLESFINRMESNYK-------------IQDA 472
EQ +V+DG LEE+ S+IN + YK +
Sbjct: 383 -------------DEQYEVQDGEGNQLEEV--SYINNNQGGYKGYNNFKTNNPNLSYRST 427
Query: 473 AIKNLKSQ----------------FGQLAKQMAKIPQGKFSPN----ALILSKHENADDV 512
+ N + Q + Q KQ +++P GK N A ++ H
Sbjct: 428 NVANPQDQVYPPQQQQSQNKPFVPYNQATKQTSQLP-GKAVQNPKEYAHAITLHSGKALP 486
Query: 513 TTRSGRVLHESKKQVEGEKNDKVEEKDEGVIKKRVSEPVKARVLSTPSPELSKIPFPKA- 571
T + + E + +GE +++ + + + +P+ + + P L P
Sbjct: 487 TREEPKTVTEDSEDQDGEDLSLKKDQADKPLDLSLEQPLDLSLQQSLDPPLDSFTRPTTR 546
Query: 572 ----LANKNLDKQFSKFLEVFKKLHINIPFSEALEQMLIYAKFMRDILSKKRKLSEVDET 627
A+ K + ++ +K+ + IP +AL + KF++D++ + ++ EV
Sbjct: 547 PVIPAASPTAPKPVA--VKNKEKVELRIPLVDALALIPDSHKFLKDLIVE--RIQEVQGM 602
Query: 628 VMLTEECSAILQRK-IPRKRRDPGSFTIPVEIEGLSKVDALCDLGASINLMPLSMFRRLN 686
V+L+ ECSAI+Q+K IP+K DPGSFT+P + L+ LCDLGAS++LMPLS+ +RL
Sbjct: 603 VVLSHECSAIIQKKIIPKKLSDPGSFTLPCSLGPLAFNRCLCDLGASVSLMPLSVAKRLG 662
Query: 687 LGEVTPTMLSLQMADRSLKTPYGIIEDVMVKVDKYVFPIDFVVLDMEEDAKIPLILGRPF 746
+ +SL +ADRS++ P+G++E++ +++ P DFVVL+M+E+ K PLILGRPF
Sbjct: 663 FTQYKSCNISLILADRSVRIPHGLLENLPIRIGAVEIPTDFVVLEMDEEPKDPLILGRPF 722
Query: 747 LATARAKIDVDKGQLILRVGKD-KVRFSVFNPNLQANLNDGFFCDMIQSLSRSSKETPKV 805
LATA A IDV KG++ L +GKD ++ F V + + + F I+ + + + E +
Sbjct: 723 LATAGAMIDVKKGKIDLNLGKDFRMTFDVKDAMKKPTIEGQLF--WIEEMDQLADELLEE 780
Query: 806 SEKDVGLNQALIK 818
++ LN AL K
Sbjct: 781 LAEEDHLNSALTK 793
>emb|CAB81134.1| putative athila transposon protein [Arabidopsis thaliana]
gi|25354974|pir||B85075 probable athila transposon
protein [imported] - Arabidopsis thaliana
Length = 866
Score = 281 bits (718), Expect = 8e-74
Identities = 207/713 (29%), Positives = 334/713 (46%), Gaps = 113/713 (15%)
Query: 175 NFKLRPAFINLVSQSQYGGGSSEDPHAHMERFIRNCNTYRVSNVSSEAIRLSLFPFSLKD 234
NF+++ I+++ +++ G EDP H++ F R CN +++ VS++ +L LFPFSL D
Sbjct: 38 NFEIKSGLISMIQGNKFYGLPMEDPLDHLDEFDRLCNLTKINGVSADGFKLRLFPFSLGD 97
Query: 235 AAEEWLNSQPQGSITTWEDLAEKFTTRFFPRALLRKLKKDIMNFVQSAEENLYEAWERFK 294
A W + P SI TW+D + F ++FF A +L+ +I F Q E+ EAWERFK
Sbjct: 98 KAHIWEKNLPHDSIITWDDCKKAFLSKFFSNARTARLRNEISGFSQKTGESFCEAWERFK 157
Query: 295 KLLRKCPQHNLTQAELVATFYDGLEYSWRFGLDTASSGEFDALPPQAGYDLIEKMAARAM 354
+CP H T+A +++T Y G+ R LDTAS+G F + G++L++ +A
Sbjct: 158 GYTNQCPHHGFTKASMLSTLYRGVLPRIRMLLDTASNGNFQNKDVEEGWELVDNLAQSDG 217
Query: 355 NSENDRQTRRRMFEFEAYDKLLASNKQISEKVAEIQNHIKVTKLVGASVAKVECVTRGGP 414
N D ++ + + H K K + + ++
Sbjct: 218 NYNED------------------CDRTVRDTADSDDKHRKEIKALNDKLDRI-------- 251
Query: 415 NFSNSCTMTNQGFQGQSSGLFQQVQEQVDVKDGGKKSLEELLESFINRMESNYK------ 468
+ NQ Q F EQ V+DG LEE+ S+IN +S YK
Sbjct: 252 -------LLNQ----QKHVHFLVDDEQFQVQDGEGNQLEEV--SYINNNQSGYKGYNNFK 298
Query: 469 -------IQDAAIKNLKSQFGQLAKQMAK-----------IPQGKFS--------PNALI 502
+ I N + Q +Q + +P+ +F P
Sbjct: 299 TNNPNLSYRSTNIANPQDQVYPPQQQQVQNKPFVPYNQGFVPKQQFQGNYQPPPPPGGKA 358
Query: 503 LSKHENADDVTTRS----GRVLHESKKQVEGEKNDKVEEKDEGVIKKRVSEPV------- 551
L E VT S G L K Q + +++ E + + +P+
Sbjct: 359 LPTREEPKTVTEDSEDQDGEDLSLEKDQADKPHEQPLDQSLEQPLDLSLEQPLDLPLDNV 418
Query: 552 ------------------------KARVLSTPSPELSKIPFPKALANKNLDKQFSKFLEV 587
K +V P P ++PFP DK + F +
Sbjct: 419 TRPTTRPIFPAASATAPKPITVKNKEKVF-VPPPYKPELPFPGRHKKALADKYRAMFAKN 477
Query: 588 FKKLHINIPFSEALEQMLIYAKFMRDILSKKRKLSEVDETVMLTEECSAILQRKI-PRKR 646
K++ + IP +AL + KF++D++ ++ + EV V+L+ CSAI+Q+KI P+K
Sbjct: 478 IKEVELRIPLVDALALIPDSHKFLKDLIVER--IQEVQGMVVLSHGCSAIIQKKIIPKKL 535
Query: 647 RDPGSFTIPVEIEGLSKVDALCDLGASINLMPLSMFRRLNLGEVTPTMLSLQMADRSLKT 706
DPGSFT+P + L+ LCDLGAS++LM LS+ +RL + + +SL +ADRS++
Sbjct: 536 SDPGSFTLPCSLGPLAFNRCLCDLGASVSLMALSVAKRLGFTQYKSSNISLILADRSVRI 595
Query: 707 PYGIIEDVMVKVDKYVFPIDFVVLDMEEDAKIPLILGRPFLATARAKIDVDKGQLILRVG 766
P+G++++ + + P DFVVL+M+E+ K PLILGRPFLATA A IDV KG++ L +G
Sbjct: 596 PHGLLKNFGITIGAVEIPTDFVVLEMDEEPKDPLILGRPFLATAGAMIDVKKGKIDLSLG 655
Query: 767 KD-KVRFSVFNPNLQANLNDGFFCDMIQSLSRSSKETPKVSEKDVGLNQALIK 818
KD ++ F V + + + F I+ + + + E + ++ LN AL K
Sbjct: 656 KDFRMTFDVKDAMKKPTIEGQLF--WIKEMDQLADELLEELAEEDHLNSALTK 706
>gb|AAF24531.1| F7F22.17 [Arabidopsis thaliana]
Length = 1799
Score = 275 bits (703), Expect = 4e-72
Identities = 218/758 (28%), Positives = 354/758 (45%), Gaps = 135/758 (17%)
Query: 189 SQYGGGSSEDPHAHMERFIRNCNTYRVSNVSSEAIRLSLFPFSLKDAAEEWLNSQPQGSI 248
+++ G EDP H++ F R CN +++ VS + +L LFPFSL D A W + P SI
Sbjct: 35 NKFHGLPMEDPLDHLDEFDRLCNLTKINGVSEDGFKLRLFPFSLGDKAHIWEKNLPHDSI 94
Query: 249 TTWEDLAEKFTTRFFPRALLRKLKKDIMNFVQSAEENLYEAWERFKKLLRKCPQHNLTQA 308
TTW+D + F ++FF A +L+ +I F Q E+ EAWERFK +CP H T+A
Sbjct: 95 TTWDDCKKVFLSKFFSNARTARLRNEISGFSQKTGESFCEAWERFKGYTNQCPHHGFTKA 154
Query: 309 ELVATFYDGLEYSWRFGLDTASSGEFDALPPQAGYDLIEKMAAR--AMNSENDRQTRRRM 366
L++T Y G+ R LDTAS+G F + G++L+E +A N + DR R
Sbjct: 155 SLLSTLYRGVLPRIRMLLDTASNGNFQNKDVEEGWELVENLAQSDGNYNEDCDRTVRGTA 214
Query: 367 FEFEAYDKLLASNKQISEKVAEI--QNHIKVTKLV-----------GASVAKVECV--TR 411
++ DK K +++K+ I H V LV G + +V + +
Sbjct: 215 ---DSDDKHRKEIKALNDKLDRILLSQHKHVHFLVDDEQYEVQDGEGNQLEEVSYINNNQ 271
Query: 412 GG-----------PNFSNSCTMT-----------------------NQGF--QGQSSGLF 435
GG PN S T NQGF + Q G +
Sbjct: 272 GGYKGYNYFKTNNPNLSYRSTNVANPQDQVYPPQQQQSQNKPFVPYNQGFVPKQQFQGNY 331
Query: 436 QQ-----------------------VQEQVDVKDGGKKSLEELLESFINRMESNYKIQDA 472
QQ +Q+ + + + + + N+++ +Y +
Sbjct: 332 QQQPPGFAPPQHQGPAAPDADMKQMLQQLLHGQASCSMEMAKKISELHNKLDCSYNDLNV 391
Query: 473 AIKNLKSQFGQL---AKQMAKIPQGKFSPNALILSKHENADDVTTRSGRVL--------- 520
++ L ++ L + + Q P + + E A +T RSG+ L
Sbjct: 392 KMETLDTKVRYLEGHSTSSSATKQTSQLPGKAVQNPKEYAHAITLRSGKALPTREEPKTV 451
Query: 521 HESKKQVEGEKNDKVEEKDEGVIKKRVSEPVKARVLSTPSPELSK---------IP---- 567
E + +GE +++ + + + +P+ + + P L IP
Sbjct: 452 TEDSEDQDGEDLSLEKDQADKPLDLSLEQPLDLSLQQSLDPPLDSFTRPTTRPVIPAASP 511
Query: 568 -FPKALANKNLDKQF------------------------SKFLEVFKKLHINIPFSEALE 602
PK +A KN +K F + F + K++ + IP +AL
Sbjct: 512 TAPKPVAVKNKEKVFVPPPYKSQLPFPGRHKKALADKYRAMFAKNIKEVELRIPLVDALA 571
Query: 603 QMLIYAKFMRDILSKKRKLSEVDETVMLTEECSAILQRK-IPRKRRDPGSFTIPVEIEGL 661
+ KF++D++ + ++ EV V+L+ ECSAI+Q+K IP+K DPGSFT+P + L
Sbjct: 572 LIPDSHKFLKDLIVE--RIQEVQGMVVLSHECSAIIQKKIIPKKLSDPGSFTLPCSLGPL 629
Query: 662 SKVDALCDLGASINLMPLSMFRRLNLGEVTPTMLSLQMADRSLKTPYGIIEDVMVKVDKY 721
+ LCDLGAS++LMPLS+ +RL + +SL +ADRS++ P+G++E++ +++
Sbjct: 630 AFNRCLCDLGASVSLMPLSVAKRLGFTQYKSCNISLILADRSVRIPHGLLENLPIRIGAV 689
Query: 722 VFPIDFVVLDMEEDAKIPLILGRPFLATARAKIDVDKGQLILRVGKD-KVRFSVFNPNLQ 780
P DFVVL+M+E+ K PLILGRPFLATA A IDV KG++ L +GKD ++ F V + +
Sbjct: 690 EIPTDFVVLEMDEEPKDPLILGRPFLATAGAMIDVKKGKIDLNLGKDFRMTFDVKDAMKK 749
Query: 781 ANLNDGFFCDMIQSLSRSSKETPKVSEKDVGLNQALIK 818
+ F I+ + + + E + ++ LN AL K
Sbjct: 750 PTIEGQLF--WIEEMDQLADELLEELAEEDHLNSALTK 785
>gb|AAP51916.1| putative polyprotein [Oryza sativa (japonica cultivar-group)]
gi|37530654|ref|NP_919629.1| putative polyprotein [Oryza
sativa (japonica cultivar-group)]
gi|20042899|gb|AAM08727.1| Putative polyprotein [Oryza
sativa] gi|18997221|gb|AAL83338.1| Putative polyprotein
[Oryza sativa (japonica cultivar-group)]
Length = 689
Score = 271 bits (692), Expect = 8e-71
Identities = 208/699 (29%), Positives = 340/699 (47%), Gaps = 82/699 (11%)
Query: 147 ANRSLRELTSAPMSYDYPGSIVFPEGVGNFKLRPAFINLVSQSQYGGGSSEDPHAHMERF 206
A+++LRE +AP + + G +F L+ + I + S + G +ED +AH+++F
Sbjct: 2 ASKTLREF-AAPFADNVAIGPQVNIGDADFDLKSSHITMAQASPFCGKPNEDANAHLQQF 60
Query: 207 IRNCNTYRVSNVSSEAIRLSLFPFSLKDAAEEWLNSQPQGSITTWEDLAEKFTTRFFPRA 266
+ C+TY + VS + ++L LFPFSL A++W + + ++ TW+ + F ++FFP
Sbjct: 61 LEICSTYTIKGVSPDVVKLRLFPFSLLGRAKQWFYAN-RTAVNTWDKCSTAFLSKFFPM- 118
Query: 267 LLRKLKKDIMNFVQSAEENLYEAWERFKKLLRKCPQHNLTQAELVATFYDGLEYSWRFGL 326
EAWER ++ + CP + ++ FY+GL R L
Sbjct: 119 ---------------------EAWERLQEYVAACPHLGMDDWLILQNFYNGLTPMSRDHL 157
Query: 327 DTASSGEFDALPPQAGYDLIEKMAARAMNSENDRQTRRRMFEFEAYDKLLASNKQISEKV 386
D A+ G F + Q +LIEKM + SE QTR+R +LLA+ + K
Sbjct: 158 DAAARGAFFSKTVQGAVELIEKMVSNMGWSEERLQTRQRGMHTVKETELLAAKLDLLMK- 216
Query: 387 AEIQNHIK-VTKLVGASVAKVECVTRGGPNFS-NSCTMTNQG--FQGQSSGLFQQV---- 438
+ +H K + V A + V C G S N C T + + G ++G Q
Sbjct: 217 -RLDDHEKGPQRTVKALDSHVMCEVCGNTGHSGNDCLETCEEAMYMGNNNGYCPQGGQGW 275
Query: 439 -QEQVDVKDGGKKSLEELLESFINRMESNYKIQDAAIKNLKS--QFGQL--AKQMAKIPQ 493
Q + + G S S + + + K DA K L + + L A + +IP
Sbjct: 276 NQPRPYYQGGNNNSNFPNQPSLKDLVFAQAKTTDALSKKLAANDKLASLVPANETGRIP- 334
Query: 494 GKFSPNALILSKHENADDVTTRSGRVLHE------------SKKQVEGEKNDKVEEKDEG 541
G+ P+ EN +T R G+ + SK + DK E + E
Sbjct: 335 GQPDPSI------ENVKAITMRRGKSTRDPPYPNPVGTNEISKGAPSNDSADK-EVQPEN 387
Query: 542 VIKKRVSEPVKARVLSTPSPELSKIPFPKALANKNLDKQFSKFLEVFKKLHINIPFSEAL 601
+ + + R+LS FP+ + ++D+QF++F+EV +K+HIN+P +A+
Sbjct: 388 TVPQEYCD---TRLLS----------FPQRMRKPSVDEQFARFVEVIQKIHINVPLLDAM 434
Query: 602 EQMLIYAKFMRDILSKKRKLSEVDETVMLTEECSAILQRKIPRKRRDPGSFTIPVEIEGL 661
Q+ YA++++DIL+ KR L E V LTE+CS ++ K+P K++DPG TI I
Sbjct: 435 -QVPTYARYLKDILNNKRPLPTT-EVVKLTEQCSNLILHKLPEKKKDPGCPTITCSIGAQ 492
Query: 662 SKVDALCDLGASINLMPLSMFRRLNLGEVTPTMLSLQMADRSLKTPYGIIEDVMVKVDKY 721
C+LGAS++++ +F +LN + PT + LQ+AD S++ P GI EDV VK+ +
Sbjct: 493 QFDQVSCNLGASVSVVLKDVFDKLNFTVLAPTPMRLQLADSSVRYPAGIAEDVPVKIRDF 552
Query: 722 VFPIDFVVLDMEEDAKIPLILGRPFLATARAKIDVDKGQLILRVGKDKVRFSVFNPNLQA 781
P+DFVVLDM+ + PLILGRPFL+TA A IDV G + + K +F F P +
Sbjct: 553 FIPVDFVVLDMDTGKETPLILGRPFLSTAGANIDVGTGSIRFHINGKKEKFE-FQPRTEQ 611
Query: 782 NLNDGFFCDMIQSLSRSSKETPKVSEKDVGLNQALIKLV 820
C M++ + + +V + + +L+K +
Sbjct: 612 -------CSMVRIKHGLNPQNTQVVKVEPPKTDSLVKFM 643
>ref|NP_909568.1| hypothetical protein [Oryza sativa] gi|14018108|gb|AAK52171.1|
hypothetical protein [Oryza sativa]
Length = 657
Score = 237 bits (605), Expect = 1e-60
Identities = 186/679 (27%), Positives = 301/679 (43%), Gaps = 92/679 (13%)
Query: 147 ANRSLRELTSAPMSYDYPGSIVFPEGVGNFKLRPAFINLVSQSQYGGGSSEDPHAHMERF 206
A+++LRE +AP + + G +F L+ + I + + G +ED +AH+++F
Sbjct: 2 ADKTLREF-AAPSTGNVAIGPQINMGDVDFDLKSSLIMMAQACPFCGEPNEDANAHLQQF 60
Query: 207 IRNCNTYRVSN---VSSEAIRLSLFPFSLKDAAEEWLNSQPQGSITTWEDLAEKFTTRFF 263
+ C TY + VS +A+RL LF F L ++W + + + W+ + F ++FF
Sbjct: 61 LEICITYTIKGIKGVSPDAVRLRLFLFFLLGKTKQWFYAN-RAVVNIWDKCSTAFLSKFF 119
Query: 264 PRALLRKLKKDIMNFVQSAEENLYEAWERFKKLLRKCPQHNLTQAELVATFYDGLEYSWR 323
P L I +F + E++ EAWER ++ + CP H + ++ FY+GL R
Sbjct: 120 PMGKTNALGGRISSFQLTRVESIPEAWERLQEYVAVCPHHGMDGWLILQNFYNGLTPMSR 179
Query: 324 FGLDTASSGEFDALPPQAGYDLIEKMAARAMNSENDRQTRRRMFEFEAYDKLLASNKQIS 383
LD A+ G F + + DLIEKM + SE QT +R F +LLA+ +
Sbjct: 180 DHLDAAAEGSFFSKVVRGAVDLIEKMVSNMGWSEERLQTHQRGMCFVKETELLAAKLDLL 239
Query: 384 EKVAEIQNHIKVTK-LVGASVAKVECVTRGGPNFS-NSCTMTNQGFQGQSSGLFQQVQEQ 441
K + +H K + + A + V C GG S N C T + +
Sbjct: 240 MK--RLDDHDKRPQGTIKALDSHVTCEVCGGTGHSGNDCLETREDAMYMGNN-------- 289
Query: 442 VDVKDGGKKSLEELLESFINRMESNYKIQDAAIKNLKSQFGQLAKQMAKIPQGKFSPNAL 501
N G A + +IP+ S
Sbjct: 290 ---------------------------------NNGNRPRGVPATETGRIPEQTDS---- 312
Query: 502 ILSKHENADDVTTRSGRVLHESKKQVEGEKNDKVEEKDEGVIKKRVSEPVKARVLSTPSP 561
EN +TTR G+ + N E + +P KA
Sbjct: 313 ---SIENVMAITTRGGKSTRDPPYPNPAGTNRVAREAPSSNSADKEVQPEKAVPQEYCDT 369
Query: 562 ELSKIPFPKALANKNLDKQFSKFLEVFKKLHINIPFSEALEQMLIYAKFMRDILSKKRKL 621
L +PF + ++D+QF++F+EV +K+HIN+P
Sbjct: 370 RL--LPFHQRSRKPSVDEQFARFVEVIQKIHINVPL------------------------ 403
Query: 622 SEVDETVMLTEECSAILQRKIPRKRRDPGSFTIPVEIEGLSKVDALCDLGASINLMPLSM 681
+ + V LTE+CS ++ K+ K++DPG TI I LCDLGAS+++MP ++
Sbjct: 404 -DAMQVVKLTEQCSNVILHKLLEKKKDPGCPTITCSIGAQQFDQVLCDLGASVSVMPKNV 462
Query: 682 FRRLNLGEVTPTMLSLQMADRSLKTPYGIIEDVMVKVDKYVFPIDFVVLDMEEDAKIPLI 741
F +LN + PT + LQ+AD ++ P GI ED++VK+ + P+DFVVLDM+ + PLI
Sbjct: 463 FDKLNFTVLAPTPMRLQLADSLVRYPTGIAEDMLVKIWDFFIPVDFVVLDMDNGKETPLI 522
Query: 742 LGRPFLATARAKIDVDKGQLILRVGKDKVRFSVFNPNLQANLNDGFFCDMIQSLSRSSKE 801
LGRPFL+TA A IDV+ + + K +F F P + C M++ + +
Sbjct: 523 LGRPFLSTAGANIDVETRSIRFHINGKKEKFQ-FQPRTEQ-------CSMVRIKYGPNPQ 574
Query: 802 TPKVSEKDVGLNQALIKLV 820
+V E + +L+K +
Sbjct: 575 NIQVVEVEPPKMDSLVKFM 593
>gb|AAP44598.1| putative retrotransposon gag protein [Oryza sativa (japonica
cultivar-group)] gi|34896534|ref|NP_909611.1| putative
retrotransposon gag protein [Oryza sativa (japonica
cultivar-group)]
Length = 697
Score = 233 bits (593), Expect = 3e-59
Identities = 184/691 (26%), Positives = 313/691 (44%), Gaps = 79/691 (11%)
Query: 147 ANRSLRELTSAPMSYDYPGSIVFPEGVGNFKLRPAFINLVSQSQYGGGSSEDPHAHMERF 206
AN++LRE + + G V V +F L+ + I + S + G +ED +AH+++F
Sbjct: 2 ANKTLREFIAPSVDNVAIGPQVNIGDV-DFDLKSSLITMAQASPFCGKPNEDANAHLQQF 60
Query: 207 IRNCNTYRVSNVSSEAIRLSLFPFSLKDAAEEWLNSQPQGSITTWEDLAEKFTTRFFPRA 266
+ C+ Y + VS +RL LFPFSL ++W + + TW+ + F ++FFP
Sbjct: 61 LEICSMYTIKGVSPNTVRLRLFPFSLLRRVKQWFYANCAAA-NTWDKCSMAFLSKFFPMG 119
Query: 267 LLRKLKKDIMNFVQSAEENLYEAWERFKKLLRKCPQHNLTQAELVATFYDGLEYSWRFGL 326
L+ I +F Q+ +E++ EAWER ++ + CP H + ++ FY+GL R L
Sbjct: 120 KTNALRGRISSFQQTMDESIPEAWERLQEYVAACPHHGMDDWLILQNFYNGLTPMSRDHL 179
Query: 327 DTASSGEFDALPPQAGYDLIEKMAARAMNSENDRQTRRRMFEFEAYDKLLASNKQISEKV 386
D A+ G F + Q + IEKM + SE QTR+R +LL + + K
Sbjct: 180 DAAAGGAFFSKTVQGAVEFIEKMVSNMGWSEERLQTRQRGMHTVKETELLPAKLDLLMK- 238
Query: 387 AEIQNHIKV----TKLVGASVAKVECVTRGGPNFSNSCTMT---------NQGFQGQSSG 433
+ +H K+ K + + V C G P N+C T N G++ Q
Sbjct: 239 -RLDDHEKMPQGTVKALDSHVTCEVCGDTGHP--GNNCPETREEAMYMGNNNGYRRQGDL 295
Query: 434 LFQQVQ--EQVDVKDGGKKSLEELLESFINRMESNYKIQDAAIKNLKSQFGQLAKQMAKI 491
+F Q + + + K + E ++ S ++ Q K +++Q QLA +
Sbjct: 296 VFAQAKTTDSLSKKLAANDKIVENRNVKLDGFASAFQNQLCFNKMMETQLAQLASLVPAN 355
Query: 492 PQGKF--SPNALILSKHENADDVTTRSGRVLHESKKQVEGEKNDKVEEKDEGVIKKRVSE 549
G+ P++ I EN +TTR G+ + N +E + + +
Sbjct: 356 ETGRIPGQPDSSI----ENVKAITTRGGKSTRDPPYPNPTRTNGLSKEAPSNGLADKEVQ 411
Query: 550 PVKARVLSTPSPELSKIPFPKALANKNLDKQFSKFLEVFKKLHINIPFSEALEQMLIYAK 609
P K + ++ +PFP+ + ++D+QF++F+EV +K+HIN+P +A+ Q+ YA+
Sbjct: 412 PEK--TMPQEYCDIRLLPFPQRMRKPSVDEQFARFVEVIQKIHINMPLLDAM-QVPTYAR 468
Query: 610 FMRDILSKKRKLSEVDETVMLTEECSAILQRKIPRKRRDPGSFTIPVEIEGLSKVDALCD 669
++DIL+ KR L E V LT + P + G+
Sbjct: 469 CLKDILNNKRPL-PTTEVVKLTGTMQQPDTPQAPGEEERSGA------------------ 509
Query: 670 LGASINLMPLSMFRRLNLGEVTPTMLSLQMADRSLKTPYGIIEDVMVKVDKYVFPIDFVV 729
PT + LQ+ D S++ I +DV VK+ + P+DFVV
Sbjct: 510 ----------------------PTPMRLQLVDSSIRYTARIAKDVPVKIRYFFIPVDFVV 547
Query: 730 LDMEEDAKIPLILGRPFLATARAKIDVDKGQLILRVGKDKVRFSVFNPNLQANLNDGFFC 789
LDM+ + P ILGRPFL+TA A IDV G + + + +F F P + C
Sbjct: 548 LDMDTGKETPFILGRPFLSTAGANIDVGTGSIYFHINGKEEKFE-FQPRTEQ-------C 599
Query: 790 DMIQSLSRSSKETPKVSEKDVGLNQALIKLV 820
M++ + + +V E++ +L+K +
Sbjct: 600 SMVRIKYGLNPQNIQVVEEEPPKTNSLVKFM 630
>gb|AAT76351.1| hypothetical protein [Oryza sativa (japonica cultivar-group)]
Length = 585
Score = 215 bits (548), Expect = 4e-54
Identities = 160/510 (31%), Positives = 250/510 (48%), Gaps = 34/510 (6%)
Query: 275 IMNFVQSAEENLYEAWERFKKLLRKCPQHNLTQAELVATFYDGLEYSWRFGLDTASSGEF 334
I +F Q+ +E++ EAWE ++ + CP H + ++ FY+ L R LD A+ G F
Sbjct: 11 ISSFQQTRDESIPEAWELLQEYVAACPHHGMDDWLILQNFYNRLTPMSRDHLDAAAGGAF 70
Query: 335 DALPPQAGYDLIEKMAARAMNSENDRQTRRRMFEFEAYDKLLASNKQISEKVAEIQNHIK 394
+ Q +LIEKM + S+ QTR+R +LLA+ + K + NH K
Sbjct: 71 FSKTVQGTVELIEKMVSNMGWSKERLQTRQRGMHTVKETELLAAKLDLLMK--RLDNHEK 128
Query: 395 VTK-LVGASVAKVECVTRGGPNFS-NSCTMTNQG--FQGQSSGLFQQVQEQVDVKDGGKK 450
+ V A + V C GG + S N C T + + G ++ ++ Q
Sbjct: 129 RPQGTVKALDSHVTCEVCGGTDHSGNDCPETREEAMYMGNNNNGYRPQGVQG-------- 180
Query: 451 SLEELLESFINRMESNYKIQDAAIKNLKSQFGQLAKQMAKIPQGKFSPNALILSKHENAD 510
N+ S Y+ N ++Q QLA + G+ S EN
Sbjct: 181 ---------WNQPRSYYQ----GGNNNETQLAQLAYLVPANETGRIPGQPY--SSIENVK 225
Query: 511 DVTTRSGRVLHESKKQVEGEKNDKVEEKDEGVIKKRVSEPVKARVLSTPSPELSKIPFPK 570
+TTR G+ + N +E + +P K L +PFP+
Sbjct: 226 AITTRGGKSTRDPPYPNPAGTNGMSKETPSNDSADKEIQPEKTVPQEYCDTRL--LPFPQ 283
Query: 571 ALANKNLDKQFSKFLEVFKKLHINIPFSEALEQMLIYAKFMRDILSKKRKLSEVDETVML 630
++D+ F++F+EV +++HIN+ +A+ Q+ IYA++++DIL+ KR L E V L
Sbjct: 284 WSRKTSVDELFARFVEVIQRIHINVLLLDAM-QVPIYARYLKDILNNKRPLPTT-EVVKL 341
Query: 631 TEECSAILQRKIPRKRRDPGSFTIPVEIEGLSKVDALCDLGASINLMPLSMFRRLNLGEV 690
TE CS ++ K+P K++ TI I ALCDLGAS+++MP +F RLN +
Sbjct: 342 TEHCSNVILHKLPEKKKYSECPTITCSIGAQQFDQALCDLGASVSVMPKDVFDRLNFTVL 401
Query: 691 TPTMLSLQMADRSLKTPYGIIEDVMVKVDKYVFPIDFVVLDMEEDAKIPLILGRPFLATA 750
PT + LQMAD S++ GI EDV +K+ + P+DFVVLDM+ + PLILGRPFL+TA
Sbjct: 402 APTPMRLQMADSSVRYQAGIAEDVPIKIWDFFIPVDFVVLDMDTRKETPLILGRPFLSTA 461
Query: 751 RAKIDVDKGQLILRVGKDKVRFSVFNPNLQ 780
A IDV+ + + + + +F F P +
Sbjct: 462 GANIDVETSSICFHINEKEEKFE-FQPRTE 490
>gb|AAX95303.1| hypothetical protein [Oryza sativa (japonica cultivar-group)]
Length = 553
Score = 207 bits (527), Expect = 1e-51
Identities = 171/628 (27%), Positives = 283/628 (44%), Gaps = 104/628 (16%)
Query: 147 ANRSLRELTSAPMSYDYPGSIVFPEGVGNFKLRPAFINLVSQSQYGGGSSEDPHAHMERF 206
A+++LRE GS + V +F L+ + I + S + G +ED +AH+++F
Sbjct: 2 ADKTLREFIDPSADNVAIGSQINMGDV-DFDLKSSLITMAQASPFCGKPNEDANAHLQQF 60
Query: 207 IRNCNTYRVSNVSSEAIRLSLFPFSLKDAAEEWLNSQPQGSITTWEDLAEKFTTRFFPRA 266
+ C+TY + +S +A+RL LFPFSL A++W + + ++ TW+
Sbjct: 61 LEICSTYTIKGISPDAVRLRLFPFSLLGRAKQWFYAN-RAAVNTWD-------------- 105
Query: 267 LLRKLKKDIMNFVQSAEENLYEAWERFKKLLRKCPQHNLTQAELVATFYDGLEYSWRFGL 326
KC ++ FY+GL R L
Sbjct: 106 --------------------------------KC------STLILQNFYNGLMPMSRNHL 127
Query: 327 DTASSGEFDALPPQAGYDLIEKMAARAMNSENDRQTRRRMFEFEAYDKLLASNKQISEK- 385
D A+ G F + + DLIE M + SE QT +R +LLA+ + K
Sbjct: 128 DAATGGAFFSKMVRGAVDLIENMVSNMGWSEERLQTHQRGMHTVKEIELLATKLDLLRKH 187
Query: 386 VAEIQNHIKVT-KLVGASVAKVECVTRGGPNFSNSCTMTNQGFQGQSSGLFQQVQEQVDV 444
+ + + +VT K + + V C G + N C T + ++
Sbjct: 188 LDDDKKRPQVTVKALDSHVTYEVCSNMG--HSGNDCPETRE------EAMYMGNNNNGHH 239
Query: 445 KDGGKKSLEELLESFINRMESNYKIQDAAIKNLKSQFGQLAKQMAKIPQGKFSPNALILS 504
GG+ + + + +++ S + + GQ P++ +
Sbjct: 240 PQGGQGWNQPRPDYYGDQLASLVPANET-----RRILGQ--------------PDSSV-- 278
Query: 505 KHENADDVTTRSGRVLHESKKQVEGEKNDKVEEKDEGVIKKRVSEPVKARVLSTPSPELS 564
EN +TTR G + E ND D+ V ++ + P P+ S
Sbjct: 279 --ENVKAITTRGGT----NGIAKEAPSNDSA---DKEVQPEKTVPQIYCDTRLLPFPQRS 329
Query: 565 KIPFPKALANKNLDKQFSKFLEVFKKLHINIPFSEALEQMLIYAKFMRDILSKKRKLSEV 624
+ P D+Q ++F+EV +K+HIN+P +A+ Q+ YA++++DIL+ KR L
Sbjct: 330 RKPLA--------DEQLARFVEVIQKIHINVPLLDAM-QVPTYARYLKDILNNKRLLPTT 380
Query: 625 DETVMLTEECSAILQRKIPRKRRDPGSFTIPVEIEGLSKVDALCDLGASINLMPLSMFRR 684
E V LTE+C+ ++ K+P K++DP TI I ALCDLGAS+++MP +F +
Sbjct: 381 -EVVKLTEQCNDVILHKLPEKKKDPRCPTITCSIRAHQFDRALCDLGASVSVMPKDVFDK 439
Query: 685 LNLGEVTPTMLSLQMADRSLKTPYGIIEDVMVKVDKYVFPIDFVVLDMEEDAKIPLILGR 744
LN + T + LQ+A+ S++ P GI E+V K+ + P DFVVLDM+ + PLILGR
Sbjct: 440 LNFTVLASTPMRLQLANSSVRYPAGIAEEVPFKIRDFFIPFDFVVLDMDTGKETPLILGR 499
Query: 745 PFLATARAKIDVDKGQLILRVGKDKVRF 772
FL+T A IDV G ++ + + +F
Sbjct: 500 SFLSTTGANIDVGTGSILFHINGKEEKF 527
>gb|AAX92872.1| Transposable element protein, putative [Oryza sativa (japonica
cultivar-group)]
Length = 548
Score = 207 bits (526), Expect = 1e-51
Identities = 170/628 (27%), Positives = 282/628 (44%), Gaps = 109/628 (17%)
Query: 147 ANRSLRELTSAPMSYDYPGSIVFPEGVGNFKLRPAFINLVSQSQYGGGSSEDPHAHMERF 206
A+++LRE GS + V +F L+ + I + S + G +ED +AH+++F
Sbjct: 2 ADKTLREFIDPSADNVAIGSQINMGDV-DFDLKSSLITMAQASPFCGKPNEDANAHLQQF 60
Query: 207 IRNCNTYRVSNVSSEAIRLSLFPFSLKDAAEEWLNSQPQGSITTWEDLAEKFTTRFFPRA 266
+ C+TY + +S +A+RL LFPFSL A++W + + ++ TW+
Sbjct: 61 LEICSTYTIKGISPDAVRLRLFPFSLLGRAKQWFYAN-RAAVNTWD-------------- 105
Query: 267 LLRKLKKDIMNFVQSAEENLYEAWERFKKLLRKCPQHNLTQAELVATFYDGLEYSWRFGL 326
KC ++ FY+GL R L
Sbjct: 106 --------------------------------KC------STLILQNFYNGLMPMSRNHL 127
Query: 327 DTASSGEFDALPPQAGYDLIEKMAARAMNSENDRQTRRRMFEFEAYDKLLASNKQISEK- 385
D A+ G F + + DLIE M + SE QT +R +LLA+ + K
Sbjct: 128 DAATGGAFFSKMVRGAVDLIENMVSNMGWSEERLQTHQRGMHTVKEIELLATKLDLLRKH 187
Query: 386 VAEIQNHIKVT-KLVGASVAKVECVTRGGPNFSNSCTMTNQGFQGQSSGLFQQVQEQVDV 444
+ + + +VT K + + V C G + N C T + ++
Sbjct: 188 LDDDKKRPQVTVKALDSHVTYEVCSNMG--HSGNDCPETRE------EAMYMGNNNNGHH 239
Query: 445 KDGGKKSLEELLESFINRMESNYKIQDAAIKNLKSQFGQLAKQMAKIPQGKFSPNALILS 504
GG+ + + + +++ S + + GQ P++ +
Sbjct: 240 PQGGQGWNQPRPDYYGDQLASLVPANET-----RRILGQ--------------PDSSV-- 278
Query: 505 KHENADDVTTRSGRVLHESKKQVEGEKNDKVEEKDEGVIKKRVSEPVKARVLSTPSPELS 564
EN +TTR + E ND D+ V ++ + P P+ S
Sbjct: 279 --ENVKAITTRGAK---------EAPSNDSA---DKEVQPEKTVPQIYCDTRLLPFPQRS 324
Query: 565 KIPFPKALANKNLDKQFSKFLEVFKKLHINIPFSEALEQMLIYAKFMRDILSKKRKLSEV 624
+ P D+Q ++F+EV +K+HIN+P +A+ Q+ YA++++DIL+ KR L
Sbjct: 325 RKPLA--------DEQLARFVEVIQKIHINVPLLDAM-QVPTYARYLKDILNNKRLLPTT 375
Query: 625 DETVMLTEECSAILQRKIPRKRRDPGSFTIPVEIEGLSKVDALCDLGASINLMPLSMFRR 684
E V LTE+C+ ++ K+P K++DP TI I ALCDLGAS+++MP +F +
Sbjct: 376 -EVVKLTEQCNDVILHKLPEKKKDPRCPTITCSIRAHQFDRALCDLGASVSVMPKDVFDK 434
Query: 685 LNLGEVTPTMLSLQMADRSLKTPYGIIEDVMVKVDKYVFPIDFVVLDMEEDAKIPLILGR 744
LN + T + LQ+A+ S++ P GI E+V K+ + P DFVVLDM+ + PLILGR
Sbjct: 435 LNFTVLASTPMRLQLANSSVRYPAGIAEEVPFKIRDFFIPFDFVVLDMDTGKETPLILGR 494
Query: 745 PFLATARAKIDVDKGQLILRVGKDKVRF 772
FL+T A IDV G ++ + + +F
Sbjct: 495 SFLSTTGANIDVGTGSILFHINGKEEKF 522
>emb|CAE75955.1| B1159F04.18 [Oryza sativa (japonica cultivar-group)]
gi|38605826|emb|CAE05235.3| OSJNBa0011K22.17 [Oryza
sativa (japonica cultivar-group)]
gi|50923135|ref|XP_471928.1| OSJNBa0011K22.17 [Oryza
sativa (japonica cultivar-group)]
gi|50923097|ref|XP_471909.1| B1159F04.18 [Oryza sativa
(japonica cultivar-group)]
Length = 551
Score = 204 bits (520), Expect = 7e-51
Identities = 153/518 (29%), Positives = 248/518 (47%), Gaps = 67/518 (12%)
Query: 271 LKKDIMNFVQSAEENLYEAWERFKKLLRKCPQHNLTQAELVATFYDGLEYSWRFGLDTAS 330
L+ I +F Q+ +E++ EAWER ++ + CP H + ++ FY+GL LD A+
Sbjct: 7 LRGRISSFQQTRDESIPEAWERLQEYMAACPHHGMDDWLILQNFYNGLTPMSHDHLDAAA 66
Query: 331 SGEFDALPPQAGYDLIEKMAARAMNSENDRQTRRRMFEFEAYDKLLASNKQISEKVAEIQ 390
G F + Q DLIEKM M +D +K+ V +
Sbjct: 67 RGAFFSKTVQGAVDLIEKMLDLLMKRLDDH------------------DKKPQGTVKVLD 108
Query: 391 NHIKVTKLVGASVAKVECV-TRGGPNFSNSCTMTNQGFQGQSSGLFQQVQEQVDVKDGG- 448
+H+ + +C+ TR N N G+ Q + Q VD K
Sbjct: 109 SHVTCEVCGNTGHSGNDCLDTREAMYMGN-----NNGYCPQRGQGWNQPCPYVDRKHEAW 163
Query: 449 -------KKSLEELL---ESFINRMESNYKIQDAAIKNLKSQFGQLAK------QMAKIP 492
+ SL++L+ I+ + D ++N+ + A + K+
Sbjct: 164 EICLTPVQPSLKDLVFAQAKTIDALSKKLATNDKILENINVKLDGFASAFQNQLRFNKML 223
Query: 493 QGKFSPNALILSKHENADDVTTRSGRVLHESKKQVEGEKNDKVEEKDEGVIKKRVSEPVK 552
+ + + A ++ +E + + + K+V+ EK E D ++
Sbjct: 224 ETQLAQFASLVPANETGTNGIAKEVPSSDSADKEVQLEKIVPQEYCDTWLLS-------- 275
Query: 553 ARVLSTPSPELSKIPFPKALANKNLDKQFSKFLEVFKKLHINIPFSEALEQMLIYAKFMR 612
F + ++D+QF++F EV +K+HIN+P +A+ Q+ YA++++
Sbjct: 276 ---------------FHQRSRKPSVDEQFARFAEVIQKIHINVPLLDAM-QVPTYARYLK 319
Query: 613 DILSKKRKLSEVDETVMLTEECSAILQRKIPRKRRDPGSFTIPVEIEGLSKVDALCDLGA 672
D+L+ KR L + E V LTE+CS+++ K+P K++DPG TI I A CDLGA
Sbjct: 320 DMLNNKRLLPTM-EVVKLTEQCSSVILHKLPEKKKDPGCPTITCSIGAQQFDQAFCDLGA 378
Query: 673 SINLMPLSMFRRLNLGEVTPTMLSLQMADRSLKTPYGIIEDVMVKVDKYVFPIDFVVLDM 732
SI++MP + +LN +TPT++ LQ+AD S+ P GI EDV VK+ + P+DFVVLDM
Sbjct: 379 SISVMPKDVPDKLNFTVLTPTLMCLQLADLSVHYPTGIAEDVPVKIRDFFIPVDFVVLDM 438
Query: 733 EEDAKIPLILGRPFLATARAKIDVDKGQLILRV-GKDK 769
+ + PLILGRPFL+TA A IDV G + + GK+K
Sbjct: 439 DMGKETPLILGRPFLSTAGANIDVGMGSIRFDINGKEK 476
>pir||T12086 hypothetical protein - fava bean (fragment)
gi|2522230|dbj|BAA22788.1| retrotransposon-like gene~the
first amino acid was determined to be leucine [Vicia
faba]
Length = 238
Score = 187 bits (476), Expect = 9e-46
Identities = 98/200 (49%), Positives = 140/200 (70%), Gaps = 3/200 (1%)
Query: 578 DKQFSKFLEVFKKLHINIPFSEALEQMLIYAKFMRDILSKKRKLSEVDETVMLTEECSAI 637
+K F FLE+FKKL +NI EALE+M YAKFM+DI+SKKR + + ++ TE CS+I
Sbjct: 11 EKNFEIFLEMFKKLELNILVLEALEKMPTYAKFMKDIISKKRTIDT--DPIIHTETCSSI 68
Query: 638 LQ-RKIPRKRRDPGSFTIPVEIEGLSKVDALCDLGASINLMPLSMFRRLNLGEVTPTMLS 696
LQ KIP K++D G T P I S +LGAS++L+P ++++L + V T ++
Sbjct: 69 LQGMKIPVKKKDRGFVTTPCTIGDRSFKKYFINLGASVSLLPFYIYKKLGISNVQNTRMT 128
Query: 697 LQMADRSLKTPYGIIEDVMVKVDKYVFPIDFVVLDMEEDAKIPLILGRPFLATARAKIDV 756
L+ AD S+K PYGI+EDV+VK+DK+VFP+DFVVL+M ED +I LILGRPFL T R ID+
Sbjct: 129 LRFADHSVKIPYGIVEDVLVKIDKFVFPVDFVVLEMPEDEEITLILGRPFLETRRCLIDI 188
Query: 757 DKGQLILRVGKDKVRFSVFN 776
++G + L+V ++++ V N
Sbjct: 189 EEGTVTLKVYDEELKIDVQN 208
>gb|AAF79809.1| T32E20.9 [Arabidopsis thaliana]
Length = 1586
Score = 173 bits (439), Expect = 2e-41
Identities = 122/389 (31%), Positives = 201/389 (51%), Gaps = 40/389 (10%)
Query: 432 SGLFQQVQEQVDVKDGGKKSLEELLESFINRMESNYKIQDAAIKNLKSQFGQLAKQMAKI 491
S L +Q+ + + G L + + N+++ +Y + ++ L S+ + Q
Sbjct: 385 SDLKNMLQQILQGQATGAMDLSKRMAEIHNKVDCSYNDINIKVEALTSKIRYIEGQTGST 444
Query: 492 PQGKFS-PNALILSKH-ENADDVTTRSGRVLHESKKQVEGEKNDKVEEKDEGVIK----- 544
KF+ P+ +S E A +T RSG+ L +K+ D +++ E +
Sbjct: 445 AAPKFTGPSGKSMSNSKEYAHAITLRSGKEL-PTKESPNQNTEDSLDQDGEDFCQNGNSA 503
Query: 545 -KRVSEPV-----------------KARVLST------PSPELSKIPFPKALANKNLDKQ 580
K + EP+ K T P P +PFP + K
Sbjct: 504 EKAIEEPILHQPTRPLAPAASPLVEKPAAAKTKENVFIPPPYKPPLPFPGRFKKVMIQKY 563
Query: 581 FSKFLEVFKKLHINIPFSEALEQMLIYAKFMRDILSKKRKLSEVDETVMLTEECSAILQR 640
+ + K L + +P + L + K+++D+++++ K EV V+L+ ECSAI+Q+
Sbjct: 564 KALLEKQLKNLEVTMPLVDCLALIPDSNKYVKDMITERIK--EVQGMVVLSHECSAIIQQ 621
Query: 641 KI-PRKRRDPGSFTIPVEIEGLSKVDALCDLGASINLMPLSMFRRLNLGEVTPTMLSLQM 699
KI P+K DPGSFT+P + L+ LCDLGAS++LMPL + ++L + P +SL +
Sbjct: 622 KIIPKKLGDPGSFTLPCALGPLAFSKCLCDLGASVSLMPLPVAKKLGFNKYKPCNISLIL 681
Query: 700 ADRSLKTPYGIIEDVMVKVDKYVFPIDFVVLDMEEDAKIPLILGRPFLATARAKIDVDKG 759
ADRS++ +G++ED+ V + P DFVVL+M+E+ K PLILGRPFLA ARA IDV KG
Sbjct: 682 ADRSVRISHGLLEDLPVMIGVVEVPTDFVVLEMDEEPKDPLILGRPFLARARAIIDVKKG 741
Query: 760 QLILRVGKD-KVRFSVFN----PNLQANL 783
++ L +G+D K+ F + N P ++ N+
Sbjct: 742 KIDLNLGRDLKMTFDITNTMKKPTIEGNI 770
Score = 132 bits (331), Expect = 6e-29
Identities = 78/241 (32%), Positives = 121/241 (49%), Gaps = 23/241 (9%)
Query: 157 APMSYDYPGSIVFPEGVGN-FKLRPAFINLVSQSQYGGGSSEDPHAHMERFIRNCNTYRV 215
AP +++ IV P N F+++ I +V +++ G EDP H++ F R C+ ++
Sbjct: 51 APRNHNQRNGIVPPPVQNNNFEIKSGLIAMVQSNKFHGLPMEDPLDHLDEFDRLCSLTKI 110
Query: 216 SNVSSEAIRLSLFPFSLKDAAEEWLNSQPQGSITTWEDLAEKFTTRFFPRALLRKLKKDI 275
+ VS + +L LFPFSL D A +W S PQGSIT+W D + F +FF + +L+ DI
Sbjct: 111 NRVSEDGFKLRLFPFSLGDKAHQWEKSLPQGSITSWNDCKKAFLAKFFSNSRTARLRNDI 170
Query: 276 MNFVQSAEENLYEAWERFKKLLRKCPQHNLTQAELVATFYDGLEYSWRFGLDTASSGEFD 335
F Q+ E YEAWERFK +CP H + LDTAS+G F
Sbjct: 171 SGFTQTNNETFYEAWERFKGYQTQCPHHEML-------------------LDTASNGNFL 211
Query: 336 ALPPQAGYDLIEKMAAR--AMNSENDRQTRRRMFEFEAYDK-LLASNKQISEKVAEIQNH 392
+ G++++E +A N + DR R E + + + A N ++ + + Q H
Sbjct: 212 NKDVEDGWEVVENLAQSDGNYNEDYDRSIRTSSDSDEKHRREMKAMNDKLDKLLLMQQKH 271
Query: 393 I 393
I
Sbjct: 272 I 272
>gb|AAF19229.1| Similar to Athila ORF 1 [Arabidopsis thaliana]
gi|25518186|pir||B86490 F28L22.6 protein - Arabidopsis
thaliana
Length = 719
Score = 173 bits (439), Expect = 2e-41
Identities = 122/389 (31%), Positives = 201/389 (51%), Gaps = 40/389 (10%)
Query: 432 SGLFQQVQEQVDVKDGGKKSLEELLESFINRMESNYKIQDAAIKNLKSQFGQLAKQMAKI 491
S L +Q+ + + G L + + N+++ +Y + ++ L S+ + Q
Sbjct: 282 SDLKNMLQQILQGQATGAMDLSKRMAEIHNKVDCSYNDINIKVEALTSKIRYIEGQTGST 341
Query: 492 PQGKFS-PNALILSKH-ENADDVTTRSGRVLHESKKQVEGEKNDKVEEKDEGVIK----- 544
KF+ P+ +S E A +T RSG+ L +K+ D +++ E +
Sbjct: 342 AAPKFTGPSGKSMSNSKEYAHAITLRSGKEL-PTKESPNQNTEDSLDQDGEDFCQNGNSA 400
Query: 545 -KRVSEPV-----------------KARVLST------PSPELSKIPFPKALANKNLDKQ 580
K + EP+ K T P P +PFP + K
Sbjct: 401 EKAIEEPILHQPTRPLAPAASPLVEKPAAAKTKENVFIPPPYKPPLPFPGRFKKVMIQKY 460
Query: 581 FSKFLEVFKKLHINIPFSEALEQMLIYAKFMRDILSKKRKLSEVDETVMLTEECSAILQR 640
+ + K L + +P + L + K+++D+++++ K EV V+L+ ECSAI+Q+
Sbjct: 461 KALLEKQLKNLEVTMPLVDCLALIPDSNKYVKDMITERIK--EVQGMVVLSHECSAIIQQ 518
Query: 641 KI-PRKRRDPGSFTIPVEIEGLSKVDALCDLGASINLMPLSMFRRLNLGEVTPTMLSLQM 699
KI P+K DPGSFT+P + L+ LCDLGAS++LMPL + ++L + P +SL +
Sbjct: 519 KIIPKKLGDPGSFTLPCALGPLAFSKCLCDLGASVSLMPLPVAKKLGFNKYKPCNISLIL 578
Query: 700 ADRSLKTPYGIIEDVMVKVDKYVFPIDFVVLDMEEDAKIPLILGRPFLATARAKIDVDKG 759
ADRS++ +G++ED+ V + P DFVVL+M+E+ K PLILGRPFLA ARA IDV KG
Sbjct: 579 ADRSVRISHGLLEDLPVMIGVVEVPTDFVVLEMDEEPKDPLILGRPFLARARAIIDVKKG 638
Query: 760 QLILRVGKD-KVRFSVFN----PNLQANL 783
++ L +G+D K+ F + N P ++ N+
Sbjct: 639 KIDLNLGRDLKMTFDITNTMKKPTIEGNI 667
>gb|AAN04521.1| Hypothetical protein with similarity to putative retroelements
[Oryza sativa (japonica cultivar-group)]
gi|19881695|gb|AAM01096.1| Hypothetical protein with
similarity to putative retroelement [Oryza sativa]
Length = 237
Score = 165 bits (417), Expect = 6e-39
Identities = 86/196 (43%), Positives = 128/196 (64%), Gaps = 2/196 (1%)
Query: 566 IPFPKALANKNLDKQFSKFLEVFKKLHINIPFSEALEQMLIYAKFMRDILSKKRKLSEVD 625
+PFP+ ++D+QF+ F+EV +K+HI++P +A+ Q+ YA +++DIL+ KR L
Sbjct: 33 LPFPQRSRKPSVDEQFAHFVEVIQKIHIDVPLLDAM-QVPTYACYLKDILNNKRPLPTT- 90
Query: 626 ETVMLTEECSAILQRKIPRKRRDPGSFTIPVEIEGLSKVDALCDLGASINLMPLSMFRRL 685
E V LT +CS ++ K+P K++DPG TI I ALCDLGAS+++MP +F +L
Sbjct: 91 EVVKLTLQCSNVILHKLPEKKKDPGCPTITCSIGAQQFDQALCDLGASVSVMPKYVFDKL 150
Query: 686 NLGEVTPTMLSLQMADRSLKTPYGIIEDVMVKVDKYVFPIDFVVLDMEEDAKIPLILGRP 745
N + PT + LQ+AD S++ P GI EDV VK+ + +DFVVLDM+ ++ +ILGRP
Sbjct: 151 NFTVLAPTPMRLQLADSSVRYPAGIAEDVPVKIRDFFILVDFVVLDMDTGKEMSIILGRP 210
Query: 746 FLATARAKIDVDKGQL 761
FL TA A I V G +
Sbjct: 211 FLGTAGANIHVGTGSI 226
>gb|AAD19780.2| hypothetical protein [Arabidopsis thaliana]
Length = 1048
Score = 163 bits (412), Expect = 2e-38
Identities = 98/267 (36%), Positives = 149/267 (55%), Gaps = 20/267 (7%)
Query: 505 KHENADDVTTRSGRVLH-----ESKKQVEGEKNDKVEEKDEGVIKKRVSEPVKARVLSTP 559
KH+N + +SGR L+ E K+ +D +EE + G + E K VL
Sbjct: 35 KHQNPEKGGHKSGRELNPILKKEKAKEKSKAASDDLEEDNTGKESDTLEEKAKKTVLP-- 92
Query: 560 SPELSKIPFPKALANKNLDKQFSKFLEVFKKLHINIPFSEALEQMLIYAKFMRDILSKKR 619
P + K+PFP +K++S F E+ ++L + +PF + ++ + IY K ++DIL+ KR
Sbjct: 93 -PYVPKLPFPGRQRKIQREKEYSLFDEIMRQLQVKLPFLDLVQNVSIYRKHLKDILTNKR 151
Query: 620 KLSEVDETVMLTEECSAILQRKIPRKRRDPGSFTIPVEIEGLSKVDALCDLGASINLMPL 679
L E V+++ ECSAILQ + R G +T LCDLGA ++LMP
Sbjct: 152 TLEEGH--VLISHECSAILQN-VALFSRMIGEYTFD---------RCLCDLGAGVSLMPF 199
Query: 680 SMFRRLNLGEVTPTMLSLQMADRSLKTPYGIIEDVMVKVDKYVFPIDFVVLDMEEDAKIP 739
S+ +RL TPT +SL + DRS+ P G+ EDV V+V + P DFV+++++E+ +
Sbjct: 200 SVAKRLGDTNFTPTKMSLVLGDRSISFPVGVAEDVQVRVGNFYIPTDFVIIELDEEPRHR 259
Query: 740 LILGRPFLATARAKIDVDKGQLILRVG 766
LILGRPFL A IDV K ++ LR+G
Sbjct: 260 LILGRPFLNIVAALIDVRKSKINLRIG 286
>gb|AAP53442.1| hypothetical protein similar to putative retroelements [Oryza
sativa (japonica cultivar-group)]
gi|37533706|ref|NP_921155.1| hypothetical protein
similar to putative retroelements [Oryza sativa
(japonica cultivar-group)]
Length = 725
Score = 161 bits (408), Expect = 7e-38
Identities = 84/189 (44%), Positives = 125/189 (65%), Gaps = 2/189 (1%)
Query: 566 IPFPKALANKNLDKQFSKFLEVFKKLHINIPFSEALEQMLIYAKFMRDILSKKRKLSEVD 625
+PFP+ ++D+QF+ F+EV +K+HI++P +A+ Q+ YA +++DIL+ KR L
Sbjct: 64 LPFPQRSRKPSVDEQFAHFVEVIQKIHIDVPLLDAM-QVPTYACYLKDILNNKRPLPTT- 121
Query: 626 ETVMLTEECSAILQRKIPRKRRDPGSFTIPVEIEGLSKVDALCDLGASINLMPLSMFRRL 685
E V LT +CS ++ K+P K++DPG TI I ALCDLGAS+++MP +F +L
Sbjct: 122 EVVKLTLQCSNVILHKLPEKKKDPGCPTITCSIGAQQFDQALCDLGASVSVMPKYVFDKL 181
Query: 686 NLGEVTPTMLSLQMADRSLKTPYGIIEDVMVKVDKYVFPIDFVVLDMEEDAKIPLILGRP 745
N + PT + LQ+AD S++ P GI EDV VK+ + +DFVVLDM+ ++ +ILGRP
Sbjct: 182 NFTVLAPTPMRLQLADSSVRYPAGIAEDVPVKIRDFFILVDFVVLDMDTGKEMSIILGRP 241
Query: 746 FLATARAKI 754
FL TA A I
Sbjct: 242 FLGTAGANI 250
>gb|AAG52027.1| Athila ORF 1, putative; 43045-40843 [Arabidopsis thaliana]
gi|25405058|pir||F96491 hypothetical protein T4I21.13
[imported] - Arabidopsis thaliana
Length = 530
Score = 158 bits (400), Expect = 6e-37
Identities = 84/185 (45%), Positives = 134/185 (72%), Gaps = 4/185 (2%)
Query: 594 NIPFSEALEQMLIYAKFMRDILSKKRKLSEVDETVMLTEECSAILQRKIPRKR-RDPGSF 652
++P + L + K+++D+++++ K EV V+L+ ECSAI+Q+KI +++ DPGSF
Sbjct: 120 DMPLVDCLALIPNEHKYVKDLITERIK--EVQGMVVLSHECSAIIQQKIVQEKLEDPGSF 177
Query: 653 TIPVEIEGLSKVDALCDLGASINLMPLSMFRRLNLGEVTPTMLSLQMADRSLKTPYGIIE 712
T+P I L+ ++LCDLGAS+++MPLSM R+L + P L+L +ADR+ + P+G++E
Sbjct: 178 TLPCSIRQLTFSNSLCDLGASVSIMPLSMARKLGFVQYKPCDLTLILADRTSRRPFGLLE 237
Query: 713 DVMVKVDKYVFPIDFVVLDMEEDAKIPLILGRPFLATARAKIDVDKGQLILRVGKD-KVR 771
DV V ++ PIDFVVL+M+E++K PLILGRPFLA+A A IDV +G++ L +G+D K++
Sbjct: 238 DVPVMINGVEVPIDFVVLEMDEESKDPLILGRPFLASAGAVIDVKQGKINLNLGEDFKMK 297
Query: 772 FSVFN 776
F + N
Sbjct: 298 FEIRN 302
>gb|AAP52811.1| hypothetical protein similar to putative retroelements [Oryza
sativa (japonica cultivar-group)]
gi|37532444|ref|NP_920524.1| hypothetical protein
similar to putative retroelements [Oryza sativa
(japonica cultivar-group)] gi|21672049|gb|AAM74411.1|
Hypothetical protein similar to putative retroelements
[Oryza sativa (japonica cultivar-group)]
Length = 322
Score = 154 bits (390), Expect = 9e-36
Identities = 82/194 (42%), Positives = 121/194 (62%), Gaps = 8/194 (4%)
Query: 579 KQFSKFLEVFKKLHINIPFSEALEQMLIYAKFMRDILSKKRKLSEVDETVMLTEECSAIL 638
+QF++ +EV +K+HIN+P +A+ Q+ YA++++DIL+ KR L TE CS ++
Sbjct: 123 QQFARSVEVIQKIHINVPLLDAM-QVPTYARYLKDILNNKRPLPT-------TEHCSNVI 174
Query: 639 QRKIPRKRRDPGSFTIPVEIEGLSKVDALCDLGASINLMPLSMFRRLNLGEVTPTMLSLQ 698
K+P K++DP TI I ALCDLGAS+++MP +F +LN + PT + LQ
Sbjct: 175 LHKLPEKKKDPRCPTITCSIGAQQFDQALCDLGASVSVMPKDVFDKLNFTVLAPTPMRLQ 234
Query: 699 MADRSLKTPYGIIEDVMVKVDKYVFPIDFVVLDMEEDAKIPLILGRPFLATARAKIDVDK 758
+AD S+ P GI EDV VK+ + P+DFVVLDM+ + LILG PFL+TA A IDV
Sbjct: 235 LADSSVHCPVGIEEDVPVKIWDFFIPVDFVVLDMDTGKETSLILGHPFLSTAGANIDVGM 294
Query: 759 GQLILRVGKDKVRF 772
G + + + +F
Sbjct: 295 GSIRFHINGKEEKF 308
Database: nr
Posted date: Jul 5, 2005 12:34 AM
Number of letters in database: 863,360,394
Number of sequences in database: 2,540,612
Lambda K H
0.326 0.139 0.408
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,256,260,139
Number of Sequences: 2540612
Number of extensions: 50827804
Number of successful extensions: 196797
Number of sequences better than 10.0: 961
Number of HSP's better than 10.0 without gapping: 535
Number of HSP's successfully gapped in prelim test: 428
Number of HSP's that attempted gapping in prelim test: 195507
Number of HSP's gapped (non-prelim): 1577
length of query: 822
length of database: 863,360,394
effective HSP length: 137
effective length of query: 685
effective length of database: 515,296,550
effective search space: 352978136750
effective search space used: 352978136750
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 79 (35.0 bits)
Lotus: description of TM0265.4