BLAST2 result
BLASTP 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TM0263.7
(787 letters)
Database: nr
2,540,612 sequences; 863,360,394 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAP52238.1| putative retroelement [Oryza sativa (japonica cul... 302 3e-80
emb|CAE03883.2| OSJNBb0015N08.11 [Oryza sativa (japonica cultiva... 292 3e-77
gb|AAX95804.1| retrotransposon protein, putative, unclassified [... 277 1e-72
gb|AAP53939.1| putative non-LTR retroelement reverse transcripta... 275 5e-72
gb|AAG51783.1| reverse transcriptase, putative; 16838-20266 [Ara... 272 3e-71
emb|CAB75484.1| putative protein [Arabidopsis thaliana] gi|11357... 272 3e-71
gb|AAD20714.1| putative non-LTR retroelement reverse transcripta... 271 5e-71
gb|AAD24831.1| putative non-LTR retroelement reverse transcripta... 271 5e-71
emb|CAD39568.2| OSJNBa0019G23.12 [Oryza sativa (japonica cultiva... 271 5e-71
emb|CAB81184.1| putative protein [Arabidopsis thaliana] gi|45393... 271 6e-71
gb|AAX92720.1| retrotransposon protein, putative, unclassified [... 271 6e-71
gb|AAC33961.1| contains similarity to reverse trancriptase (Pfam... 271 6e-71
pir||G96509 protein F27F5.21 [imported] - Arabidopsis thaliana g... 269 2e-70
dbj|BAC15618.2| unnamed protein product [Oryza sativa (japonica ... 263 1e-68
gb|AAD03565.2| putative non-LTR retroelement reverse transcripta... 262 3e-68
pir||T00833 RNA-directed DNA polymerase homolog T13L16.7 - Arabi... 262 3e-68
ref|XP_475426.1| putative non-LTR retroelement reverse transcrip... 261 5e-68
gb|AAV32224.1| hypothetical protein [Oryza sativa (japonica cult... 261 5e-68
gb|AAB82639.1| putative non-LTR retroelement reverse transcripta... 257 9e-67
gb|AAQ19327.1| bZIP-like protein [Oryza sativa (japonica cultiva... 257 9e-67
>gb|AAP52238.1| putative retroelement [Oryza sativa (japonica cultivar-group)]
gi|37531298|ref|NP_919951.1| putative retroelement
[Oryza sativa (japonica cultivar-group)]
gi|22655797|gb|AAN04214.1| Putative retroelement [Oryza
sativa (japonica cultivar-group)]
Length = 764
Score = 302 bits (773), Expect = 3e-80
Identities = 166/404 (41%), Positives = 245/404 (60%), Gaps = 7/404 (1%)
Query: 385 LRGGNASFITLIPKVENPQGLGNYRPISLVGCVYKIVAKLLSMRLREVLSKVIDDRQTAF 444
+R N ITLIPKV++ + ++RPI L+ +K + K+L+ RL E+ KVI + QTAF
Sbjct: 28 MRRLNYGVITLIPKVKDANTIKSFRPICLLNVCFKFLTKILTRRLSEIAQKVIGESQTAF 87
Query: 445 IGGRFMLDSVVVANEVVEEAKRRKKECFVFKVDFEKAYDSVDWNFLFYMMSRIGFSHKWI 504
I GR LD VV+ +EV+ E K+ KK +FK+DFEKAYD V W+FLF ++ + GFS +WI
Sbjct: 88 IPGRQNLDGVVILHEVLHELKKEKKSGIIFKLDFEKAYDKVQWSFLFDVLHKKGFSDRWI 147
Query: 505 HWIKGCIQSASSSVLVNGSPTEEFNMGRGLRQGDPLAPFLFLIVAEGLNGLMRQAVQQKL 564
W+K +V +NG + F RG+RQGDPL+P LF +VA+ L+ ++ A Q
Sbjct: 148 QWVKMATIGGKMAVNINGEVKDFFKTYRGVRQGDPLSPLLFNLVADALSEMLNNAKQA-- 205
Query: 565 FTGYRVGGDEVEISLLQFADDTLFFGEASTQNILVVKSILRWFEAMSGLKVNFFKSKLAG 624
+ V G ++ LQ+ADDT+ F + +NI+ VK +L +EAMSGLK+N+ KS++
Sbjct: 206 -VPHLVPGG---LTHLQYADDTILFMTNTEENIVTVKFLLYCYEAMSGLKINYQKSEIMV 261
Query: 625 ISMVSRETQIFAAMLNCKVMGVPFTYLGIPVGANPRKAATWEPVIKKMQRKLSL*KHKSL 684
I ETQ A + NC+ +PFTYLGIP+ N A + K++++L+ K L
Sbjct: 262 IGGDEMETQRVADLFNCQAGKMPFTYLGIPISMNKLTNADLDIPPNKIEKRLATWKCGYL 321
Query: 685 SFGGRICLIKSVLSSLPLFFFSFFKAPKCIIDQCNKIQRKFLWGG-EEGRGVAWVKWEEI 743
S+GG+ LI S LSS+PL+ + P+ + ++ + I+ +F W G E+ R +KWE +
Sbjct: 322 SYGGKAILINSCLSSIPLYMMGVYLLPEGVHNKMDSIRARFFWEGLEKKRKYHMIKWEAL 381
Query: 744 CKKKEEGGLGVKDLESFNKALLVKWRWRLLREREWLWCQVLESK 787
C+ KE GGLG D N ALL KW +RL +E C +L +K
Sbjct: 382 CRPKEFGGLGFIDTRKMNIALLCKWIYRLESGKEDPCCVLLRNK 425
>emb|CAE03883.2| OSJNBb0015N08.11 [Oryza sativa (japonica cultivar-group)]
gi|21741977|emb|CAD41785.1| OSJNBa0035M09.1 [Oryza
sativa (japonica cultivar-group)]
gi|50928543|ref|XP_473799.1| OSJNBb0015N08.11 [Oryza
sativa (japonica cultivar-group)]
Length = 1026
Score = 292 bits (747), Expect = 3e-77
Identities = 150/400 (37%), Positives = 235/400 (58%), Gaps = 3/400 (0%)
Query: 389 NASFITLIPKVENPQGLGNYRPISLVGCVYKIVAKLLSMRLREVLSKVIDDRQTAFIGGR 448
N ITLIPK ++ + +RPI L+ +KI+ K+L RL ++ +I +QTAF+ R
Sbjct: 296 NFGVITLIPKTKDASQIQKFRPICLLNVSFKIITKVLMNRLNGTMAYIISKQQTAFLKNR 355
Query: 449 FMLDSVVVANEVVEEAKRRKKECFVFKVDFEKAYDSVDWNFLFYMMSRIGFSHKWIHWIK 508
F+++ VV+ +EV+ ++K+ +FKVDFEKAYD V+W F++ M+ GF +W WI
Sbjct: 356 FIMEGVVILHEVLNSIHQKKQSGILFKVDFEKAYDKVNWVFIYRMLKAKGFPDQWCDWIM 415
Query: 509 GCIQSASSSVLVNGSPTEEFNMGRGLRQGDPLAPFLFLIVAEGLNGLMRQAVQQKLFTGY 568
+ +V VN F +GLRQGDPL+P LF + AE L L+++A + L G
Sbjct: 416 KVVMGGKVAVKVNDQIGSFFKTHKGLRQGDPLSPLLFNLAAEALTLLVQRAEENSLIEGL 475
Query: 569 RVGGDEVEISLLQFADDTLFFGEASTQNILVVKSILRWFEAMSGLKVNFFKSKLAGISMV 628
GD +I++LQ+ADDT+F + +K IL FE +SGLK+NF KS++
Sbjct: 476 GTNGDN-KIAILQYADDTIFLINDKLDHAKNLKYILCLFEQLSGLKINFNKSEVFCFGEA 534
Query: 629 SRETQIFAAMLNCKVMGVPFTYLGIPVGANPRKAATWEPVIKKMQRKLSL*KHKSLSFGG 688
+ +++ + CKV +P YLGIP+ W+ KM+ KL + + S GG
Sbjct: 535 KEKQDLYSNIFTCKVGSLPLKYLGIPIDQKRILNKDWKLAENKMEHKLGCWQGRLQSIGG 594
Query: 689 RICLIKSVLSSLPLFFFSFFKAPKCIIDQCNKIQRKFLWGGEEG-RGVAWVKWEEICKKK 747
R+ L+ S LSS+P++ SF++ PK + ++ + +++FLW ++G R V W +C +
Sbjct: 595 RLILLNSTLSSVPMYMISFYRLPKGVQERIDYFRKRFLWQEDQGIRKYHLVNWPLVCSPR 654
Query: 748 EEGGLGVKDLESFNKALLVKWRWRLLREREWLWCQVLESK 787
++GGLGV DLE+ NKA+L KW WRL E W W +++ +K
Sbjct: 655 DQGGLGVLDLEAMNKAMLGKWIWRLENEEGW-WQEIIYAK 693
>gb|AAX95804.1| retrotransposon protein, putative, unclassified [Oryza sativa
(japonica cultivar-group)]
Length = 849
Score = 277 bits (708), Expect = 1e-72
Identities = 153/400 (38%), Positives = 230/400 (57%), Gaps = 5/400 (1%)
Query: 389 NASFITLIPKVENPQGLGNYRPISLVGCVYKIVAKLLSMRLREVLSKVIDDRQTAFIGGR 448
N I+LIPKV++ + +RPI L+ +K++ K+L+ RL V VI + QTAFI GR
Sbjct: 211 NYGVISLIPKVKDANTIKAFRPICLLNVCFKLITKILTNRLTLVAHNVIGESQTAFIPGR 270
Query: 449 FMLDSVVVANEVVEEAKRRKKECFVFKVDFEKAYDSVDWNFLFYMMSRIGFSHKWIHWIK 508
F+LD V++ +EV+ E K+ + + K+DFEKAYD V W+FLF ++ + GF KWI WIK
Sbjct: 271 FILDGVIILHEVLHEVKKTHQSGIILKLDFEKAYDKVQWSFLFDVLQKKGFDDKWIKWIK 330
Query: 509 GCIQSASSSVLVNGSPTEEFNMGRGLRQGDPLAPFLFLIVAEGLNGLMRQAVQQKLFTGY 568
++ +NG + F RG+RQGDPL+P LF IVA+ L+ ++ +A + G
Sbjct: 331 SATIDGRVAININGEIDQYFKTFRGVRQGDPLSPLLFNIVADALSEILLKAKEAGHLEGL 390
Query: 569 RVGGDEVEISLLQFADDTLFFGEASTQNILVVKSILRWFEAMSGLKVNFFKSKLAGISMV 628
+ ++ LQ+ADDT+ F + QN++ K IL FEAMSGLK+N+ KS++ +
Sbjct: 391 VPHLVQGGLTHLQYADDTILFMTNNDQNVITTKFILHCFEAMSGLKINYQKSEVIVLGEN 450
Query: 629 SRETQIFAAMLNCKVMGVPFTYLGIPVGANPRKAATWEPVIKKMQRKLSL*KHKSLSFGG 688
ET+ A + NCK P TYLGIP+ AA K++++LS K LS+GG
Sbjct: 451 PEETKRVADLFNCKCGKFPMTYLGIPISEGRLTAADLAIPPDKIEKRLSTWKCGLLSYGG 510
Query: 689 RICLIKSVLSSLPLFFFSFFKAPKCIIDQCNKIQRKFLWGG-EEGRGVAWVKWEEICKKK 747
+ L+ +S P++ F+ P+ + + I+ +F W G E R VKWE +C+ K
Sbjct: 511 KAILV----NSSPMYMMGFYMLPEQTHQRMDSIRSRFFWEGIERKRKYHMVKWEALCRPK 566
Query: 748 EEGGLGVKDLESFNKALLVKWRWRLLREREWLWCQVLESK 787
+ GGLG D NK LL KW ++L ++ C +L K
Sbjct: 567 DFGGLGFLDTRVMNKVLLCKWIFKLESGQKDPCCDLLRRK 606
>gb|AAP53939.1| putative non-LTR retroelement reverse transcriptase [Oryza sativa
(japonica cultivar-group)] gi|37534700|ref|NP_921652.1|
putative non-LTR retroelement reverse transcriptase
[Oryza sativa (japonica cultivar-group)]
Length = 1652
Score = 275 bits (702), Expect = 5e-72
Identities = 152/396 (38%), Positives = 225/396 (56%), Gaps = 2/396 (0%)
Query: 393 ITLIPKVENPQGLGNYRPISLVGCVYKIVAKLLSMRLREVLSKVIDDRQTAFIGGRFMLD 452
ITL+PK ++ + YRPI L+ +KI K+++ R+ V KVI QT F+ GR +++
Sbjct: 1208 ITLLPKQKDASRIQQYRPICLLNVSFKIFTKVMANRIALVAQKVIKPSQTTFLSGRNIME 1267
Query: 453 SVVVANEVVEEAKRRKKECFVFKVDFEKAYDSVDWNFLFYMMSRIGFSHKWIHWIKGCIQ 512
VV+ +E + E ++KK + K+DFEKAYD VDW FL + GFS KW WI ++
Sbjct: 1268 GVVILHETLHELHKKKKNGVILKLDFEKAYDKVDWKFLQQSLRMKGFSSKWCDWIDSIVR 1327
Query: 513 SASSSVLVNGSPTEEFNMGRGLRQGDPLAPFLFLIVAEGLNGLMRQAVQQKLFTGYRVGG 572
S +V VN F +GLRQGDPL+P LF +V + L L+++A Q F G
Sbjct: 1328 GGSVAVKVNDEIGSYFQTRKGLRQGDPLSPILFNLVVDMLAILIQRAKDQGRFKGVVPHL 1387
Query: 573 DEVEISLLQFADDTLFFGEASTQNILVVKSILRWFEAMSGLKVNFFKSKLAGISMVSRET 632
+ +S+LQ+ADDT+ F + +K +L FE +S LK+NF+KS+L
Sbjct: 1388 VDNGLSILQYADDTILFMDHDLDEARDLKLVLSTFEKLSSLKINFYKSELFCYGKAKDVE 1447
Query: 633 QIFAAMLNCKVMGVPFTYLGIPVGANPRKAATWEPVIKKMQRKLSL*KHKSLSFGGRICL 692
+ + C PF YLGI + W+ V +++Q+KLS K K LS GGR+ L
Sbjct: 1448 HEYVKLFGCDTEDYPFKYLGIRMHHKRINNKDWQGVEERIQKKLSSWKGKFLSVGGRLVL 1507
Query: 693 IKSVLSSLPLFFFSFFKAPKCIIDQCNKIQRKFLWG-GEEGRGVAWVKWEEICKKKEEGG 751
I SVLS+L +F SFF+ PK I+ + + + +F W E + +W +CK KE GG
Sbjct: 1508 INSVLSNLAIFMLSFFEIPKGILKKLDYYRSRFFWQCDEHKKKYRLARWSVLCKPKECGG 1567
Query: 752 LGVKDLESFNKALLVKWRWRLLREREWLWCQVLESK 787
LG+++LE NK LL KW ++L+ E E +W +L +K
Sbjct: 1568 LGIQNLEIQNKCLLSKWLYKLINE-EGVWQDILRNK 1602
>gb|AAG51783.1| reverse transcriptase, putative; 16838-20266 [Arabidopsis thaliana]
gi|25405244|pir||E96519 probable reverse transcriptase,
16838-20266 [imported] - Arabidopsis thaliana
Length = 1142
Score = 272 bits (696), Expect = 3e-71
Identities = 145/404 (35%), Positives = 229/404 (55%), Gaps = 5/404 (1%)
Query: 389 NASFITLIPKVENPQGLGNYRPISLVGCVYKIVAKLLSMRLREVLSKVIDDRQTAFIGGR 448
N + I LIPK E P + RPISL YK+++K+L RL+ VL +I + Q+AF+ GR
Sbjct: 269 NTTNICLIPKTERPTRMTELRPISLCNVGYKVISKILCQRLKTVLPNLISETQSAFVDGR 328
Query: 449 FMLDSVVVANEVVEEAKRR---KKECFVFKVDFEKAYDSVDWNFLFYMMSRIGFSHKWIH 505
+ D++++A E+ + K + K D KAYD V+WNF+ ++ ++GF KWI
Sbjct: 329 LISDNILIAQEMFHGLRTNSSCKDKFMAIKTDMSKAYDQVEWNFIEALLRKMGFCEKWIS 388
Query: 506 WIKGCIQSASSSVLVNGSPTEEFNMGRGLRQGDPLAPFLFLIVAEGLNGLMRQAVQQKLF 565
WI CI + VL+NG P RGLRQGDPL+P+LF++ E L +R+A +Q L
Sbjct: 389 WIMWCITTVQYKVLINGQPKGLIIPERGLRQGDPLSPYLFILCTEVLIANIRKAERQNLI 448
Query: 566 TGYRVGGDEVEISLLQFADDTLFFGEASTQNILVVKSILRWFEAMSGLKVNFFKSKLA-G 624
TG +V +S L FADD+LFF +A+ + ++ IL+ +E++SG ++NF KS + G
Sbjct: 449 TGIKVATPSPAVSHLLFADDSLFFCKANKEQCGIILEILKQYESVSGQQINFSKSSIQFG 508
Query: 625 ISMVSRETQIFAAMLNCKVMGVPFTYLGIPVGANPRKAATWEPVIKKMQRKLSL*KHKSL 684
+ +L +G +YLG+P K + V ++Q +++ K L
Sbjct: 509 HKVEDSIKADIKLILGIHNLGGMGSYLGLPESLGGSKTKVFSFVRDRLQSRINGWSAKFL 568
Query: 685 SFGGRICLIKSVLSSLPLFFFSFFKAPKCIIDQCNKIQRKFLWGGE-EGRGVAWVKWEEI 743
S GG+ +IKSV ++LP + S F+ PK I + KF W + RG+ W+ W+++
Sbjct: 569 SKGGKEVMIKSVAATLPRYVMSCFRLPKAITSKLTSAVAKFWWSSNGDSRGMHWMAWDKL 628
Query: 744 CKKKEEGGLGVKDLESFNKALLVKWRWRLLREREWLWCQVLESK 787
C K +GGLG ++++ FN ALL K WRL+ + L+ +V + +
Sbjct: 629 CSSKSDGGLGFRNVDDFNSALLAKQLWRLITAPDSLFAKVFKGR 672
>emb|CAB75484.1| putative protein [Arabidopsis thaliana] gi|11357921|pir||T47495
hypothetical protein F9K21.130 - Arabidopsis thaliana
Length = 851
Score = 272 bits (696), Expect = 3e-71
Identities = 149/404 (36%), Positives = 231/404 (56%), Gaps = 5/404 (1%)
Query: 389 NASFITLIPKVENPQGLGNYRPISLVGCVYKIVAKLLSMRLREVLSKVIDDRQTAFIGGR 448
N + I +IPK++NPQ L +YRPI+L +YK+++K + RL+ L+ ++ D Q AFI GR
Sbjct: 106 NHTNICMIPKIQNPQTLSDYRPIALCNVLYKVISKCMVNRLKAHLNSIVSDSQAAFIPGR 165
Query: 449 FMLDSVVVANEVVEEAKRRK---KECFVFKVDFEKAYDSVDWNFLFYMMSRIGFSHKWIH 505
+ D+V++A+E++ K RK K K D KAYD V+W+FL M GF KWI
Sbjct: 166 IINDNVMIAHEIMHSLKVRKRVSKTYMAVKTDVSKAYDRVEWDFLETTMRLFGFCDKWIG 225
Query: 506 WIKGCIQSASSSVLVNGSPTEEFNMGRGLRQGDPLAPFLFLIVAEGLNGLMRQAVQQKLF 565
WI ++S SVL+NGSP + RG+RQGDPL+P+LF++ + L+ L++
Sbjct: 226 WIMAAVKSVHYSVLINGSPHGYISPTRGIRQGDPLSPYLFILCGDILSHLIKVKASSGDI 285
Query: 566 TGYRVGGDEVEISLLQFADDTLFFGEASTQNILVVKSILRWFEAMSGLKVNFFKSKLAGI 625
G R+G I+ LQFADD+LFF +A+ +N +K + +E SG K+N KS +
Sbjct: 286 RGVRIGNGAPAITHLQFADDSLFFCQANVRNCQALKDVFDVYEYYSGQKINVQKSLITFG 345
Query: 626 SMVSRETQI-FAAMLNCKVMGVPFTYLGIPVGANPRKAATWEPVIKKMQRKLSL*KHKSL 684
S V TQ +LN G YLG+P +K + +I +++ + + K L
Sbjct: 346 SRVYGSTQTRLKTLLNIPNQGGGGKYLGLPEQFGRKKKEMFNYIIDRVKERTASWSAKFL 405
Query: 685 SFGGRICLIKSVLSSLPLFFFSFFKAPKCIIDQCNKIQRKFLW-GGEEGRGVAWVKWEEI 743
S G+ L+KSV ++P++ S FK P+ I+ + + F W RG+ WV W+ +
Sbjct: 406 SPAGKEILLKSVALAMPVYAMSCFKLPQGIVSEIESLLMNFWWEKASNKRGIPWVAWKRL 465
Query: 744 CKKKEEGGLGVKDLESFNKALLVKWRWRLLREREWLWCQVLESK 787
K+EGGLG +DL FN ALL K WR+++ L+ +V++++
Sbjct: 466 QYSKKEGGLGFRDLAKFNDALLAKQAWRIIQYPNSLFARVMKAR 509
>gb|AAD20714.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
thaliana] gi|25412331|pir||G84649 hypothetical protein
At2g25550 [imported] - Arabidopsis thaliana
Length = 1750
Score = 271 bits (694), Expect = 5e-71
Identities = 151/404 (37%), Positives = 229/404 (56%), Gaps = 5/404 (1%)
Query: 389 NASFITLIPKVENPQGLGNYRPISLVGCVYKIVAKLLSMRLREVLSKVIDDRQTAFIGGR 448
N + I +IPK+ NP L +YRPI+L +YK+++K L RL+ L+ ++ D Q AFI GR
Sbjct: 867 NHTNICMIPKITNPTTLSDYRPIALCNVLYKVISKCLVNRLKSHLNSIVSDSQAAFIPGR 926
Query: 449 FMLDSVVVANEVVEEAKRRK---KECFVFKVDFEKAYDSVDWNFLFYMMSRIGFSHKWIH 505
+ D+V++A+EV+ K RK K K D KAYD V+W+FL M GF +KWI
Sbjct: 927 IINDNVMIAHEVMHSLKVRKRVSKTYMAVKTDVSKAYDRVEWDFLETTMRLFGFCNKWIG 986
Query: 506 WIKGCIQSASSSVLVNGSPTEEFNMGRGLRQGDPLAPFLFLIVAEGLNGLMRQAVQQKLF 565
WI ++S SVL+NGSP RG+RQGDPL+P+LF++ + L+ L+
Sbjct: 987 WIMAAVKSVHYSVLINGSPHGYITPTRGIRQGDPLSPYLFILCGDILSHLINGRASSGDL 1046
Query: 566 TGYRVGGDEVEISLLQFADDTLFFGEASTQNILVVKSILRWFEAMSGLKVNFFKSKLAGI 625
G R+G I+ LQFADD+LFF +A+ +N +K + +E SG K+N KS +
Sbjct: 1047 RGVRIGNGAPAITHLQFADDSLFFCQANVRNCQALKDVFDVYEYYSGQKINVQKSMITFG 1106
Query: 626 SMVSRETQI-FAAMLNCKVMGVPFTYLGIPVGANPRKAATWEPVIKKMQRKLSL*KHKSL 684
S V TQ +L G YLG+P +K +E +I +++++ S + L
Sbjct: 1107 SRVYGSTQSRLKQILEIPNQGGGGKYLGLPEQFGRKKKEMFEYIIDRVKKRTSTWSARFL 1166
Query: 685 SFGGRICLIKSVLSSLPLFFFSFFKAPKCIIDQCNKIQRKFLW-GGEEGRGVAWVKWEEI 743
S G+ ++KSV ++P++ S FK PK I+ + + F W RG+ WV W+ +
Sbjct: 1167 SPAGKEIMLKSVALAMPVYAMSCFKLPKGIVSEIESLLMNFWWEKASNQRGIPWVAWKRL 1226
Query: 744 CKKKEEGGLGVKDLESFNKALLVKWRWRLLREREWLWCQVLESK 787
K+EGGLG +DL FN ALL K WRL++ L+ +V++++
Sbjct: 1227 QYSKKEGGLGFRDLAKFNDALLAKQAWRLIQYPNSLFARVMKAR 1270
>gb|AAD24831.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
thaliana] gi|25408166|pir||G84721 hypothetical protein
At2g31520 [imported] - Arabidopsis thaliana
Length = 1524
Score = 271 bits (694), Expect = 5e-71
Identities = 151/404 (37%), Positives = 229/404 (56%), Gaps = 5/404 (1%)
Query: 389 NASFITLIPKVENPQGLGNYRPISLVGCVYKIVAKLLSMRLREVLSKVIDDRQTAFIGGR 448
N + I +IPK+ NP L +YRPI+L +YK+++K L RL+ L+ ++ D Q AFI GR
Sbjct: 641 NHTNICMIPKITNPTTLSDYRPIALCNVLYKVISKCLVNRLKSHLNSIVSDSQAAFIPGR 700
Query: 449 FMLDSVVVANEVVEEAKRRK---KECFVFKVDFEKAYDSVDWNFLFYMMSRIGFSHKWIH 505
+ D+V++A+EV+ K RK K K D KAYD V+W+FL M GF +KWI
Sbjct: 701 IINDNVMIAHEVMHSLKVRKRVSKTYMAVKTDVSKAYDRVEWDFLETTMRLFGFCNKWIG 760
Query: 506 WIKGCIQSASSSVLVNGSPTEEFNMGRGLRQGDPLAPFLFLIVAEGLNGLMRQAVQQKLF 565
WI ++S SVL+NGSP RG+RQGDPL+P+LF++ + L+ L+
Sbjct: 761 WIMAAVKSVHYSVLINGSPHGYITPTRGIRQGDPLSPYLFILCGDILSHLINGRASSGDL 820
Query: 566 TGYRVGGDEVEISLLQFADDTLFFGEASTQNILVVKSILRWFEAMSGLKVNFFKSKLAGI 625
G R+G I+ LQFADD+LFF +A+ +N +K + +E SG K+N KS +
Sbjct: 821 RGVRIGNGAPAITHLQFADDSLFFCQANVRNCQALKDVFDVYEYYSGQKINVQKSMITFG 880
Query: 626 SMVSRETQI-FAAMLNCKVMGVPFTYLGIPVGANPRKAATWEPVIKKMQRKLSL*KHKSL 684
S V TQ +L G YLG+P +K +E +I +++++ S + L
Sbjct: 881 SRVYGSTQSKLKQILEIPNQGGGGKYLGLPEQFGRKKKEMFEYIIDRVKKRTSTWSARFL 940
Query: 685 SFGGRICLIKSVLSSLPLFFFSFFKAPKCIIDQCNKIQRKFLW-GGEEGRGVAWVKWEEI 743
S G+ ++KSV ++P++ S FK PK I+ + + F W RG+ WV W+ +
Sbjct: 941 SPAGKEIMLKSVALAMPVYAMSCFKLPKGIVSEIESLLMNFWWEKASNQRGIPWVAWKRL 1000
Query: 744 CKKKEEGGLGVKDLESFNKALLVKWRWRLLREREWLWCQVLESK 787
K+EGGLG +DL FN ALL K WRL++ L+ +V++++
Sbjct: 1001 QYSKKEGGLGFRDLAKFNDALLAKQAWRLIQYPNSLFARVMKAR 1044
>emb|CAD39568.2| OSJNBa0019G23.12 [Oryza sativa (japonica cultivar-group)]
gi|50930119|ref|XP_474587.1| OSJNBa0019G23.12 [Oryza
sativa (japonica cultivar-group)]
Length = 1140
Score = 271 bits (694), Expect = 5e-71
Identities = 151/392 (38%), Positives = 218/392 (55%), Gaps = 5/392 (1%)
Query: 387 GGNASFITLIPKVENPQGLGNYRPISLVGCVYKIVAKLLSMRLREVLSKVIDDRQTAFIG 446
G N ITLIPKVE + YRPI L+ YKI K+ + R+ V +++ QTAF+
Sbjct: 719 GLNFGVITLIPKVEEANRIQQYRPICLLNVSYKIFTKVATNRISSVADNLVNPTQTAFMR 778
Query: 447 GRFMLDSVVVANEVVEEAKRRKKECFVFKVDFEKAYDSVDWNFLFYMMSRIGFSHKWIHW 506
GR +LD V + +E V E R+K +FK+DFEKAYD V W FL + GFS KWI W
Sbjct: 779 GRNILDGVAIIHETVHELHRKKLNGVIFKIDFEKAYDKVKWPFLLQTLRMKGFSPKWISW 838
Query: 507 IKGCIQSASSSVLVNGSPTEEFNMGRGLRQGDPLAPFLFLIVAEGLNGLMRQAVQQKLFT 566
IK I S +V VN F +GL+QGDPL+P LF + + L L+ +A Q
Sbjct: 839 IKSFIVGGSVAVKVNDDVGPFFQTKKGLQQGDPLSPILFNFIVDMLATLINRAKTQGQVD 898
Query: 567 GYRVGGDEVEISLLQFADDTLFFGEASTQNILVVKSILRWFEAMSGLKVNFFKSKLAGIS 626
G + +S+LQ+ DD + F + +KS+L FE +SGLK+NF KS+L
Sbjct: 899 GLIPHLIDGGLSILQYVDDIVLFMNHDLEKAQNMKSVLLAFEQLSGLKINFHKSELYCFG 958
Query: 627 MVSRETQIFAAMLNCKVMGVPFTYLGIPVGANPRKAATWEPVIKKMQRKLSL*KHKSLSF 686
+A + C+V PF YLGIP+ + A W+ V+++ ++KLS K K LS
Sbjct: 959 EALEYRDQYAQLFGCQVGNFPFRYLGIPIHCRKLRNAEWKEVVERFEKKLSSWKGKLLSL 1018
Query: 687 GGRICLIKSVLSSLPLFFFSFFKAPKCIIDQCNKIQRKFLWGGE-EGRGVAWVKWEEICK 745
GGR+ LI SVLSSLP++ SF P ++ + + ++ +F W G+ + KW+ IC+
Sbjct: 1019 GGRLTLINSVLSSLPMYMMSFLAIPSGVLKKLDYLRSRFYWQGDGHKKKYQLAKWDIICR 1078
Query: 746 KKEEGGLGVKDLESFNKALLVKW--RWRLLRE 775
K++G LG+ DLE L+ +W W +L +
Sbjct: 1079 PKDQGRLGIHDLEVI--TLVTRWLRTWAILHK 1108
>emb|CAB81184.1| putative protein [Arabidopsis thaliana] gi|4539357|emb|CAB40051.1|
putative protein [Arabidopsis thaliana]
gi|7486147|pir||T04278 hypothetical protein F25I24.40 -
Arabidopsis thaliana
Length = 1294
Score = 271 bits (693), Expect = 6e-71
Identities = 149/404 (36%), Positives = 232/404 (56%), Gaps = 5/404 (1%)
Query: 389 NASFITLIPKVENPQGLGNYRPISLVGCVYKIVAKLLSMRLREVLSKVIDDRQTAFIGGR 448
N + I +IPK+ NP+ L +YRPI+L +YKI++K L RL+ L ++ D Q AFI GR
Sbjct: 847 NHTNICMIPKITNPETLSDYRPIALCNVLYKIISKCLVERLKGHLDAIVSDSQAAFIPGR 906
Query: 449 FMLDSVVVANEVVEEAKRRKK---ECFVFKVDFEKAYDSVDWNFLFYMMSRIGFSHKWIH 505
+ D+V++A+E++ K RK+ K D KAYD V+WNFL M GFS WI
Sbjct: 907 LVNDNVMIAHEMMHSLKTRKRVSQSYMAVKTDVSKAYDRVEWNFLETTMRLFGFSETWIK 966
Query: 506 WIKGCIQSASSSVLVNGSPTEEFNMGRGLRQGDPLAPFLFLIVAEGLNGLMRQAVQQKLF 565
WI G ++S + SVLVNG P RG+RQGDPL+P+LF++ A+ LN L++ V +
Sbjct: 967 WIMGAVKSVNYSVLVNGIPHGTIQPQRGIRQGDPLSPYLFILCADILNHLIKNRVAEGDI 1026
Query: 566 TGYRVGGDEVEISLLQFADDTLFFGEASTQNILVVKSILRWFEAMSGLKVNFFKSKLAGI 625
G R+G ++ LQFADD+LFF +++ +N +K + +E SG K+N KS +
Sbjct: 1027 RGIRIGNGVPGVTHLQFADDSLFFCQSNVRNCQALKDVFDVYEYYSGQKINMSKSMITFG 1086
Query: 626 SMVSRETQ-IFAAMLNCKVMGVPFTYLGIPVGANPRKAATWEPVIKKMQRKLSL*KHKSL 684
S V TQ +L + G YLG+P +K + +I++++++ S K L
Sbjct: 1087 SRVHGTTQNRLKNILGIQSHGGGGKYLGLPEQFGRKKRDMFNYIIERVKKRTSSWSAKYL 1146
Query: 685 SFGGRICLIKSVLSSLPLFFFSFFKAPKCIIDQCNKIQRKFLW-GGEEGRGVAWVKWEEI 743
S G+ ++KSV S+P++ S FK P I+ + + F W + R + W+ W+ +
Sbjct: 1147 SPAGKEIMLKSVAMSMPVYAMSCFKLPLNIVSEIEALLMNFWWEKNAKKREIPWIAWKRL 1206
Query: 744 CKKKEEGGLGVKDLESFNKALLVKWRWRLLREREWLWCQVLESK 787
K+EGGLG +DL FN ALL K WR++ L+ ++++++
Sbjct: 1207 QYSKKEGGLGFRDLAKFNDALLAKQVWRMINNPNSLFARIMKAR 1250
>gb|AAX92720.1| retrotransposon protein, putative, unclassified [Oryza sativa
(japonica cultivar-group)] gi|62701880|gb|AAX92953.1|
retrotransposon protein, putative, unclassified [Oryza
sativa (japonica cultivar-group)]
Length = 838
Score = 271 bits (693), Expect = 6e-71
Identities = 145/381 (38%), Positives = 222/381 (58%), Gaps = 2/381 (0%)
Query: 389 NASFITLIPKVENPQGLGNYRPISLVGCVYKIVAKLLSMRLREVLSKVIDDRQTAFIGGR 448
N I LIPK+++ + YRPI L+ +KI+ K+L R+ E+++ +I QTAF+ R
Sbjct: 458 NFGVINLIPKIKDAAQIQKYRPICLLNVSFKIITKVLMNRITEIMTYIISKNQTAFLKNR 517
Query: 449 FMLDSVVVANEVVEEAKRRKKECFVFKVDFEKAYDSVDWNFLFYMMSRIGFSHKWIHWIK 508
F+++ V++ +E++ ++K+ +FKVDFEKAYD VDW F++ M+ F +W W+
Sbjct: 518 FIMEGVLILHEILNSLHQKKQSGVLFKVDFEKAYDKVDWVFIYRMLKAKEFPDQWCDWVM 577
Query: 509 GCIQSASSSVLVNGSPTEEFNMGRGLRQGDPLAPFLFLIVAEGLNGLMRQAVQQKLFTGY 568
I +V VN F +GLRQGDPL+P LF + A+ L L+++A L G
Sbjct: 578 KVIMGGKVAVQVNDQVGPYFKTHKGLRQGDPLSPLLFNLAAKALILLVQRAEDNLLIEGL 637
Query: 569 RVGGDEVEISLLQFADDTLFFGEASTQNILVVKSILRWFEAMSGLKVNFFKSKLAGISMV 628
D ++ +LQ+ADDT+F + +K IL FE +SGLK+NF KS++ I
Sbjct: 638 G-ENDNNKVVILQYADDTIFLLPDNETYAKNLKYILCLFEQLSGLKINFNKSEVFCIGEA 696
Query: 629 SRETQIFAAMLNCKVMGVPFTYLGIPVGANPRKAATWEPVIKKMQRKLSL*KHKSLSFGG 688
+ + ++F+ + C V +P YLGIP+ W KM+ KL + K S GG
Sbjct: 697 ADKAEVFSQIFTCSVGVLPMKYLGIPLDQKRITKKDWRNAENKMESKLGCWQGKLQSIGG 756
Query: 689 RICLIKSVLSSLPLFFFSFFKAPKCIIDQCNKIQRKFLWGGEEG-RGVAWVKWEEICKKK 747
R+ LI S LSS+P++ SFFK PK + ++ + +R+FLW ++G R V+W IC +
Sbjct: 757 RLILINSSLSSVPMYMISFFKLPKGVKEKMDFFRRRFLWQEDQGIRKYHLVQWPIICSPR 816
Query: 748 EEGGLGVKDLESFNKALLVKW 768
++GGLGV DL+ NKALL KW
Sbjct: 817 DQGGLGVLDLDIMNKALLGKW 837
>gb|AAC33961.1| contains similarity to reverse trancriptase (Pfam: rvt.hmm, score:
42.57) [Arabidopsis thaliana] gi|7486711|pir||T01893
hypothetical protein F8M12.22 - Arabidopsis thaliana
Length = 1662
Score = 271 bits (693), Expect = 6e-71
Identities = 149/404 (36%), Positives = 232/404 (56%), Gaps = 5/404 (1%)
Query: 389 NASFITLIPKVENPQGLGNYRPISLVGCVYKIVAKLLSMRLREVLSKVIDDRQTAFIGGR 448
N + I +IPK+ NP+ L +YRPI+L +YKI++K L RL+ L ++ D Q AFI GR
Sbjct: 867 NHTNICMIPKITNPETLSDYRPIALCNVLYKIISKCLVERLKGHLDAIVSDSQAAFIPGR 926
Query: 449 FMLDSVVVANEVVEEAKRRKK---ECFVFKVDFEKAYDSVDWNFLFYMMSRIGFSHKWIH 505
+ D+V++A+E++ K RK+ K D KAYD V+WNFL M GFS WI
Sbjct: 927 LVNDNVMIAHEMMHSLKTRKRVSQSYMAVKTDVSKAYDRVEWNFLETTMRLFGFSETWIK 986
Query: 506 WIKGCIQSASSSVLVNGSPTEEFNMGRGLRQGDPLAPFLFLIVAEGLNGLMRQAVQQKLF 565
WI G ++S + SVLVNG P RG+RQGDPL+P+LF++ A+ LN L++ V +
Sbjct: 987 WIMGAVKSVNYSVLVNGIPHGTIQPQRGIRQGDPLSPYLFILCADILNHLIKNRVAEGDI 1046
Query: 566 TGYRVGGDEVEISLLQFADDTLFFGEASTQNILVVKSILRWFEAMSGLKVNFFKSKLAGI 625
G R+G ++ LQFADD+LFF +++ +N +K + +E SG K+N KS +
Sbjct: 1047 RGIRIGNGVPGVTHLQFADDSLFFCQSNVRNCQALKDVFDVYEYYSGQKINMSKSMITFG 1106
Query: 626 SMVSRETQ-IFAAMLNCKVMGVPFTYLGIPVGANPRKAATWEPVIKKMQRKLSL*KHKSL 684
S V TQ +L + G YLG+P +K + +I++++++ S K L
Sbjct: 1107 SRVHGTTQNRLKNILGIQSHGGGGKYLGLPEQFGRKKRDMFNYIIERVKKRTSSWSAKYL 1166
Query: 685 SFGGRICLIKSVLSSLPLFFFSFFKAPKCIIDQCNKIQRKFLW-GGEEGRGVAWVKWEEI 743
S G+ ++KSV S+P++ S FK P I+ + + F W + R + W+ W+ +
Sbjct: 1167 SPAGKEIMLKSVAMSMPVYAMSCFKLPLNIVSEIEALLMNFWWEKNAKKREIPWIAWKRL 1226
Query: 744 CKKKEEGGLGVKDLESFNKALLVKWRWRLLREREWLWCQVLESK 787
K+EGGLG +DL FN ALL K WR++ L+ ++++++
Sbjct: 1227 QYSKKEGGLGFRDLAKFNDALLAKQVWRMINNPNSLFARIMKAR 1270
>pir||G96509 protein F27F5.21 [imported] - Arabidopsis thaliana
gi|7767672|gb|AAF69169.1| F27F5.21 [Arabidopsis
thaliana]
Length = 1023
Score = 269 bits (688), Expect = 2e-70
Identities = 147/404 (36%), Positives = 228/404 (56%), Gaps = 5/404 (1%)
Query: 389 NASFITLIPKVENPQGLGNYRPISLVGCVYKIVAKLLSMRLREVLSKVIDDRQTAFIGGR 448
N + I LIPK E P + RPISL YKI++K+L RL+++L +I + +AF+ GR
Sbjct: 335 NTTNICLIPKTERPTRMTELRPISLCNVGYKIISKILCQRLKKILPSLISETHSAFVEGR 394
Query: 449 FMLDSVVVANEVVEEAKRR---KKECFVFKVDFEKAYDSVDWNFLFYMMSRIGFSHKWIH 505
+ D++++A E+ + K + K D KAYD V+WNF+ ++ ++GF KWI
Sbjct: 395 LISDNILIAQEMFHGLRTNPSCKGKFMAIKTDMSKAYDRVEWNFIEELLKKMGFCEKWIS 454
Query: 506 WIKGCIQSASSSVLVNGSPTEEFNMGRGLRQGDPLAPFLFLIVAEGLNGLMRQAVQQKLF 565
WI CI + VL+NG P RGLRQGDPL+P+LF++ E L +R+A Q+KL
Sbjct: 455 WIMWCITTVQYRVLLNGQPRGLIVPKRGLRQGDPLSPYLFILCTEVLIANIRKAEQEKLI 514
Query: 566 TGYRVGGDEVEISLLQFADDTLFFGEASTQNILVVKSILRWFEAMSGLKVNFFKSKLAGI 625
TG +V +S L FA+D+LFF +A+ + V+ IL+ +EA+SG +NF KS +
Sbjct: 515 TGIKVATASPSVSHLLFANDSLFFCKANKEQCGVILGILKQYEAVSGQMINFSKSSIQFG 574
Query: 626 SMVSRETQI-FAAMLNCKVMGVPFTYLGIPVGANPRKAATWEPVIKKMQRKLSL*KHKSL 684
V + + + L +G +YLG+P K + V ++Q +++ K L
Sbjct: 575 HKVGDDIKAEIKSALGIHSIGGMGSYLGLPESLGGSKTRIFSFVRDRLQTRINGWSAKFL 634
Query: 685 SFGGRICLIKSVLSSLPLFFFSFFKAPKCIIDQCNKIQRKFLWGGE-EGRGVAWVKWEEI 743
S GG+ +IKSV++ LP + S F+ PK I + KF W + E RG+ W+ W ++
Sbjct: 635 SKGGKEVMIKSVVAVLPTYVMSCFRLPKTITSKLTSAVAKFWWSSDGESRGMHWMAWNKL 694
Query: 744 CKKKEEGGLGVKDLESFNKALLVKWRWRLLREREWLWCQVLESK 787
C K +GGLG + + FN ALL K WRL+ + L+ +V + +
Sbjct: 695 CSSKADGGLGFRSVNDFNSALLAKQLWRLITVPDSLFAKVFKGR 738
>dbj|BAC15618.2| unnamed protein product [Oryza sativa (japonica cultivar-group)]
Length = 1197
Score = 263 bits (673), Expect = 1e-68
Identities = 141/398 (35%), Positives = 237/398 (59%), Gaps = 11/398 (2%)
Query: 389 NASFITLIPKVENPQGLGNYRPISLVGCVYKIVAKLLSMRLREVLSKVIDDRQTAFIGGR 448
N + I LIPK + YRPISL C KI++K+L+ RL++VL+++I QT F+ GR
Sbjct: 498 NRAHIVLIPKPGKENTVDGYRPISLQNCSVKILSKVLANRLQKVLTRMIHLDQTGFLKGR 557
Query: 449 FMLDSVVVANEVVEEAKRRKKECFVFKVDFEKAYDSVDWNFLFYMMSRIGFSHKWIHWIK 508
+ ++++ A E+++ RK + + K+DF KA+DSV W LF +++ GF + WI WIK
Sbjct: 558 CISENLIYATELIQACHARKCKTLIIKLDFAKAFDSVLWTSLFQILAVRGFPNNWISWIK 617
Query: 509 GCIQSASSSVLVNGSPTEEFNMGRGLRQGDPLAPFLFLIVAEGLNGLMRQAVQQKLFTGY 568
+Q++ S+VL+NG P + N +GLRQGDPL+P+LF++VA+ L L+ + Q + +
Sbjct: 618 SLLQTSKSAVLLNGIPGKWINCKKGLRQGDPLSPYLFILVADVLQRLLEKNFQIR----H 673
Query: 569 RVGGDEVEISLLQFADDTLFFGEASTQNILVVKSILRWFEAMSGLKVNFFKSKLAGISMV 628
+ D + +Q+ADDTL A ++L ++S L F +GL++NF KS + + +
Sbjct: 674 PIYQDR-PCATIQYADDTLVICRAEEDDVLALRSTLLQFSKATGLQINFAKSTMISLHID 732
Query: 629 SRETQIFAAMLNCKVMGVPFTYLGIPVGANPRKAATWEPVIKKMQRKLSL*KHKSLSFGG 688
+ + +L CK+ +P +YLG+P+ + +P++ K+ L+ + LS
Sbjct: 733 RSKESSLSELLQCKLESLPMSYLGLPLSLHKLTNNDLQPIVVKVDSFLTGWEASLLSQAE 792
Query: 689 RICLIKSVLSSLPLFFFSFFKAPKCIIDQCNKIQRKFLWGGEE--GRGVAWVKWEEICKK 746
R+ L+ +VLSS+P++ S FK P +I+ +K +R F W G++ V W+E+C
Sbjct: 793 RLILVNAVLSSVPVYAMSAFKLPPKVIEAIDKRRRAFFWTGDDTCSGAKCLVAWDEVCTA 852
Query: 747 KEEGGLGVKDLESFNKALLVKWRWRLLRER----EWLW 780
KE+GGLG+K L++ N+ALL+K + L + W+W
Sbjct: 853 KEKGGLGIKSLKTQNEALLLKRLFNLFSDNSSWTNWIW 890
>gb|AAD03565.2| putative non-LTR retroelement reverse transcriptase [Arabidopsis
thaliana] gi|25411819|pir||H84557 hypothetical protein
At2g17910 [imported] - Arabidopsis thaliana
Length = 1344
Score = 262 bits (670), Expect = 3e-68
Identities = 144/404 (35%), Positives = 233/404 (57%), Gaps = 5/404 (1%)
Query: 389 NASFITLIPKVENPQGLGNYRPISLVGCVYKIVAKLLSMRLREVLSKVIDDRQTAFIGGR 448
N + I LIPK+ +PQ + + RPISL +YKI++K+L+ RL++ L ++ Q+AF+ R
Sbjct: 463 NHTHICLIPKITSPQRMSDLRPISLCSVLYKIISKILTQRLKKHLPAIVSTTQSAFVPQR 522
Query: 449 FMLDSVVVANEVVEEAK---RRKKECFVFKVDFEKAYDSVDWNFLFYMMSRIGFSHKWIH 505
+ D+++VA+E++ + R KE FK D KAYD V+W FL MM+ +GF++KWI
Sbjct: 523 LISDNILVAHEMIHSLRTNDRISKEHMAFKTDMSKAYDRVEWPFLETMMTALGFNNKWIS 582
Query: 506 WIKGCIQSASSSVLVNGSPTEEFNMGRGLRQGDPLAPFLFLIVAEGLNGLMRQAVQQKLF 565
WI C+ S S SVL+NG P RG+RQGDPL+P LF++ E L ++ +A Q
Sbjct: 583 WIMNCVTSVSYSVLINGQPYGHIIPTRGIRQGDPLSPALFVLCTEALIHILNKAEQAGKI 642
Query: 566 TGYRVGGDEVEISLLQFADDTLFFGEASTQNILVVKSILRWFEAMSGLKVNFFKSKLA-G 624
TG + +V ++ L FADDTL +A+ Q + L + +SG +N KS + G
Sbjct: 643 TGIQFQDKKVSVNHLLFADDTLLMCKATKQECEELMQCLSQYGQLSGQMINLNKSAITFG 702
Query: 625 ISMVSRETQIFAAMLNCKVMGVPFTYLGIPVGANPRKAATWEPVIKKMQRKLSL*KHKSL 684
++ + + + G YLG+P + K + + +K+Q +L+ K+L
Sbjct: 703 KNVDIQIKDWIKSRSGISLEGGTGKYLGLPECLSGSKRDLFGFIKEKLQSRLTGWYAKTL 762
Query: 685 SFGGRICLIKSVLSSLPLFFFSFFKAPKCIIDQCNKIQRKFLWGG-EEGRGVAWVKWEEI 743
S GG+ L+KS+ +LP++ S FK PK + + + F W ++ R + W+ W+ +
Sbjct: 763 SQGGKEVLLKSIALALPVYVMSCFKLPKNLCQKLTTVMMDFWWNSMQQKRKIHWLSWQRL 822
Query: 744 CKKKEEGGLGVKDLESFNKALLVKWRWRLLREREWLWCQVLESK 787
K++GG G KDL+ FN+ALL K WR+L+E+ L+ +V +S+
Sbjct: 823 TLPKDQGGFGFKDLQCFNQALLAKQAWRVLQEKGSLFSRVFQSR 866
>pir||T00833 RNA-directed DNA polymerase homolog T13L16.7 - Arabidopsis thaliana
(fragment)
Length = 1365
Score = 262 bits (670), Expect = 3e-68
Identities = 144/404 (35%), Positives = 233/404 (57%), Gaps = 5/404 (1%)
Query: 389 NASFITLIPKVENPQGLGNYRPISLVGCVYKIVAKLLSMRLREVLSKVIDDRQTAFIGGR 448
N + I LIPK+ +PQ + + RPISL +YKI++K+L+ RL++ L ++ Q+AF+ R
Sbjct: 484 NHTHICLIPKITSPQRMSDLRPISLCSVLYKIISKILTQRLKKHLPAIVSTTQSAFVPQR 543
Query: 449 FMLDSVVVANEVVEEAK---RRKKECFVFKVDFEKAYDSVDWNFLFYMMSRIGFSHKWIH 505
+ D+++VA+E++ + R KE FK D KAYD V+W FL MM+ +GF++KWI
Sbjct: 544 LISDNILVAHEMIHSLRTNDRISKEHMAFKTDMSKAYDRVEWPFLETMMTALGFNNKWIS 603
Query: 506 WIKGCIQSASSSVLVNGSPTEEFNMGRGLRQGDPLAPFLFLIVAEGLNGLMRQAVQQKLF 565
WI C+ S S SVL+NG P RG+RQGDPL+P LF++ E L ++ +A Q
Sbjct: 604 WIMNCVTSVSYSVLINGQPYGHIIPTRGIRQGDPLSPALFVLCTEALIHILNKAEQAGKI 663
Query: 566 TGYRVGGDEVEISLLQFADDTLFFGEASTQNILVVKSILRWFEAMSGLKVNFFKSKLA-G 624
TG + +V ++ L FADDTL +A+ Q + L + +SG +N KS + G
Sbjct: 664 TGIQFQDKKVSVNHLLFADDTLLMCKATKQECEELMQCLSQYGQLSGQMINLNKSAITFG 723
Query: 625 ISMVSRETQIFAAMLNCKVMGVPFTYLGIPVGANPRKAATWEPVIKKMQRKLSL*KHKSL 684
++ + + + G YLG+P + K + + +K+Q +L+ K+L
Sbjct: 724 KNVDIQIKDWIKSRSGISLEGGTGKYLGLPECLSGSKRDLFGFIKEKLQSRLTGWYAKTL 783
Query: 685 SFGGRICLIKSVLSSLPLFFFSFFKAPKCIIDQCNKIQRKFLWGG-EEGRGVAWVKWEEI 743
S GG+ L+KS+ +LP++ S FK PK + + + F W ++ R + W+ W+ +
Sbjct: 784 SQGGKEVLLKSIALALPVYVMSCFKLPKNLCQKLTTVMMDFWWNSMQQKRKIHWLSWQRL 843
Query: 744 CKKKEEGGLGVKDLESFNKALLVKWRWRLLREREWLWCQVLESK 787
K++GG G KDL+ FN+ALL K WR+L+E+ L+ +V +S+
Sbjct: 844 TLPKDQGGFGFKDLQCFNQALLAKQAWRVLQEKGSLFSRVFQSR 887
>ref|XP_475426.1| putative non-LTR retroelement reverse transcriptase [Oryza sativa
(japonica cultivar-group)] gi|46576009|gb|AAT01370.1|
putative non-LTR retroelement reverse transcriptase
[Oryza sativa (japonica cultivar-group)]
Length = 1614
Score = 261 bits (668), Expect = 5e-68
Identities = 142/400 (35%), Positives = 225/400 (55%), Gaps = 2/400 (0%)
Query: 389 NASFITLIPKVENPQGLGNYRPISLVGCVYKIVAKLLSMRLREVLSKVIDDRQTAFIGGR 448
N I+LIPK NP + +RPI ++ +K ++K + RL E+ VI QTAFI GR
Sbjct: 1115 NFGVISLIPKNSNPTDIKQFRPICVLNDCFKFISKCVCNRLTEIARDVISPTQTAFIPGR 1174
Query: 449 FMLDSVVVANEVVEEAKRRKKECFVFKVDFEKAYDSVDWNFLFYMMSRIGFSHKWIHWIK 508
F+L+ V+ +EV+ E R+ E + K+DFEKAYD V W+FL +M R GF KW++WIK
Sbjct: 1175 FILEGCVIIHEVLHEMNRKNLEGIILKIDFEKAYDKVSWDFLIEVMVRKGFPSKWVNWIK 1234
Query: 509 GCIQSASSSVLVNGSPTEEFNMGRGLRQGDPLAPFLFLIVAEGLNGLMRQAVQQKLFTGY 568
C+ + +NG T+ F RGLRQGDPL+P LF ++++ L ++ A ++ + +G
Sbjct: 1235 TCVMGGRVCININGERTDFFRTFRGLRQGDPLSPLLFNLISDALAAMLDSAKREGVLSGL 1294
Query: 569 RVGGDEVEISLLQFADDTLFFGEASTQNILVVKSILRWFEAMSGLKVNFFKSKLAGISMV 628
I+ LQ+ADDT+ F + I+ K IL FE M+ LKVN+ KS++ + +
Sbjct: 1295 VPDIFPGGITHLQYADDTVLFVANDDKQIVATKFILYCFEEMAVLKVNYHKSEIFTLGLS 1354
Query: 629 SRETQIFAAMLNCKVMGVPFTYLGIPVGANPRKAATWEPVIKKMQRKLSL*KHKSLSFGG 688
+T A M NC V P YLG+P+G + ++ + +K++++L+ +LS G
Sbjct: 1355 DNDTNRVAMMFNCPVGQFPMKYLGLPIGPDKILNLGFDFLGQKLEKRLNS-WGNNLSHAG 1413
Query: 689 RICLIKSVLSSLPLFFFSFFKAPKCIIDQCNKIQRKFLWGGEEGRG-VAWVKWEEICKKK 747
R I + LSS+P + F++ P+ + + I+ ++ W +G VKWE++ K
Sbjct: 1414 RAVQINTCLSSIPSYAMCFYQLPEGVHQKFGSIRGRYYWARNRLKGKYHMVKWEDLAFPK 1473
Query: 748 EEGGLGVKDLESFNKALLVKWRWRLLREREWLWCQVLESK 787
+ GGLG + N ALL KW ++ E + L ++L K
Sbjct: 1474 DYGGLGFTETRRMNTALLAKWIMKIESEDDSLCIELLRRK 1513
>gb|AAV32224.1| hypothetical protein [Oryza sativa (japonica cultivar-group)]
gi|45267888|gb|AAS55787.1| hypothetical protein [Oryza
sativa (japonica cultivar-group)]
Length = 1936
Score = 261 bits (668), Expect = 5e-68
Identities = 150/407 (36%), Positives = 224/407 (54%), Gaps = 5/407 (1%)
Query: 386 RGGNASFITLIPKVENPQGLGNYRPISLVGCVYKIVAKLLSMRLREVLSKVIDDRQTAFI 445
+G N + I LIPK + P L +YRPISL VYK+V+K L RLR +L ++ Q+AFI
Sbjct: 1122 KGVNDTAIVLIPKKDQPIDLKDYRPISLCNVVYKVVSKCLVNRLRPILDDLVSKEQSAFI 1181
Query: 446 GGRFMLDSVVVANEVVEEAKRRKKE---CFVFKVDFEKAYDSVDWNFLFYMMSRIGFSHK 502
GR + D+ ++A E ++ KK +K+D KAYD VDW FL ++++GF+H+
Sbjct: 1182 QGRMITDNALLAFECFHSIQKNKKANSAACAYKLDLSKAYDRVDWRFLELALNKLGFAHR 1241
Query: 503 WIHWIKGCIQSASSSVLVNGSPTEEFNMGRGLRQGDPLAPFLFLIVAEGLNGLMRQAVQQ 562
W+ WI C+ + SV NG+ F RGLRQG+PL+PFLFL VA+GL+ L+++ V Q
Sbjct: 1242 WVSWIMLCVTTVRYSVKFNGTLLRSFAPTRGLRQGEPLSPFLFLFVADGLSLLLKEKVAQ 1301
Query: 563 KLFTGYRVGGDEVEISLLQFADDTLFFGEASTQNILVVKSILRWFEAMSGLKVNFFK-SK 621
T ++ IS L FADDTL F +A + VVK +L + +G +N K S
Sbjct: 1302 NSLTPLKICRQAPGISYLLFADDTLLFFKAEKKEAEVVKEVLTNYAQGTGQLINPAKCSI 1361
Query: 622 LAGISMVSRETQIFAAMLNCKVMGVPFTYLGIPVGANPRKAATWEPVIKKMQRKLSL*KH 681
L G + S ++ L + YLG P ++ + K+ +++
Sbjct: 1362 LFGEASPSSVSEDIRNTLQVERDNFEDRYLGFPTPEGRMHKGRFQSLQAKIAKRVIQWGE 1421
Query: 682 KSLSFGGRICLIKSVLSSLPLFFFSFFKAPKCIIDQCNKIQRKFLWGGEEG-RGVAWVKW 740
LS GG+ LIK+V+ ++P++ FK P + D+ K+ R F WG + G R W W
Sbjct: 1422 NFLSSGGKEILIKAVIQAIPVYVMGLFKFPDSVYDELTKMTRNFWWGADNGRRRTHWRAW 1481
Query: 741 EEICKKKEEGGLGVKDLESFNKALLVKWRWRLLREREWLWCQVLESK 787
+ + K K GGLG +D + FN+ALL + WRL+ L QVL++K
Sbjct: 1482 DSLTKAKINGGLGFRDYKLFNQALLTRQAWRLIEFPNSLCAQVLKAK 1528
>gb|AAB82639.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
thaliana] gi|25408936|pir||A84888 hypothetical protein
At2g45230 [imported] - Arabidopsis thaliana
Length = 1374
Score = 257 bits (657), Expect = 9e-67
Identities = 144/406 (35%), Positives = 229/406 (55%), Gaps = 5/406 (1%)
Query: 387 GGNASFITLIPKVENPQGLGNYRPISLVGCVYKIVAKLLSMRLREVLSKVIDDRQTAFIG 446
G N + I LIPK+ + + ++RPISL +YK++ KL++ RL+++L +I + Q AF+
Sbjct: 483 GMNKTNICLIPKILKAEKMTDFRPISLCNVIYKVIGKLMANRLKKILPSLISETQAAFVK 542
Query: 447 GRFMLDSVVVANEVVEEAKRRKK---ECFVFKVDFEKAYDSVDWNFLFYMMSRIGFSHKW 503
GR + D++++A+E++ K E K D KAYD V+W FL M +GF+ W
Sbjct: 543 GRLISDNILIAHELLHALSSNNKCSEEFIAIKTDISKAYDRVEWPFLEKAMRGLGFADHW 602
Query: 504 IHWIKGCIQSASSSVLVNGSPTEEFNMGRGLRQGDPLAPFLFLIVAEGLNGLMRQAVQQK 563
I I C++S VL+NG+P E RGLRQGDPL+P+LF+I E L +++ A Q+
Sbjct: 603 IRLIMECVKSVRYQVLINGTPHGEIIPSRGLRQGDPLSPYLFVICTEMLVKMLQSAEQKN 662
Query: 564 LFTGYRVGGDEVEISLLQFADDTLFFGEASTQNILVVKSILRWFEAMSGLKVNFFKSKLA 623
TG +V IS L FADD++F+ + + + + + I+ + SG +VN+ KS +
Sbjct: 663 QITGLKVARGAPPISHLLFADDSMFYCKVNDEALGQIIRIIEEYSLASGQRVNYLKSSIY 722
Query: 624 GISMVSRETQ-IFAAMLNCKVMGVPFTYLGIPVGANPRKAATWEPVIKKMQRKLSL*KHK 682
+S E + + L + G YLG+P K AT + ++ +K+ +
Sbjct: 723 FGKHISEERRCLVKRKLGIEREGGEGVYLGLPESFQGSKVATLSYLKDRLGKKVLGWQSN 782
Query: 683 SLSFGGRICLIKSVLSSLPLFFFSFFKAPKCIIDQCNKIQRKFLW-GGEEGRGVAWVKWE 741
LS GG+ L+K+V +LP + S FK PK I Q + +F W +EGRG+ W W
Sbjct: 783 FLSPGGKEILLKAVAMALPTYTMSCFKIPKTICQQIESVMAEFWWKNKKEGRGLHWKAWC 842
Query: 742 EICKKKEEGGLGVKDLESFNKALLVKWRWRLLREREWLWCQVLESK 787
+ + K GGLG K++E+FN ALL K WR++ E++ L +V +S+
Sbjct: 843 HLSRPKAVGGLGFKEIEAFNIALLGKQLWRMITEKDSLMAKVFKSR 888
>gb|AAQ19327.1| bZIP-like protein [Oryza sativa (japonica cultivar-group)]
Length = 2367
Score = 257 bits (657), Expect = 9e-67
Identities = 148/406 (36%), Positives = 223/406 (54%), Gaps = 5/406 (1%)
Query: 387 GGNASFITLIPKVENPQGLGNYRPISLVGCVYKIVAKLLSMRLREVLSKVIDDRQTAFIG 446
G N + I LIPK E P L ++RPISL VYK+V+K L RLR +L ++ Q+AF+
Sbjct: 1217 GVNDTAIVLIPKKEQPVDLRDFRPISLCNVVYKVVSKCLVNRLRPILDDLVSVEQSAFVQ 1276
Query: 447 GRFMLDSVVVANEVVEEAKRRKKE---CFVFKVDFEKAYDSVDWNFLFYMMSRIGFSHKW 503
GR + D+ ++A E ++ KK +K+D KAYD VDW FL M+++GF+ +W
Sbjct: 1277 GRMITDNALLAFECFHAMQKNKKANHAACAYKLDLSKAYDRVDWRFLEMAMNKLGFARRW 1336
Query: 504 IHWIKGCIQSASSSVLVNGSPTEEFNMGRGLRQGDPLAPFLFLIVAEGLNGLMRQAVQQK 563
++WI C+ S V NG+ + F RGLRQGDPL PFLFL VA+GL+ L+++ V Q
Sbjct: 1337 VNWIMKCVTSVRYMVKFNGTLLQSFAPTRGLRQGDPLLPFLFLFVADGLSLLLKEKVAQN 1396
Query: 564 LFTGYRVGGDEVEISLLQFADDTLFFGEASTQNILVVKSILRWFEAMSGLKVNFFK-SKL 622
T ++V IS L FADDTL F +A + VVK +L + +G +N K S L
Sbjct: 1397 SLTPFKVCRAAPGISHLLFADDTLLFFKAHQREAEVVKEVLSSYAMGTGQLINPAKCSIL 1456
Query: 623 AGISMVSRETQIFAAMLNCKVMGVPFTYLGIPVGANPRKAATWEPVIKKMQRKLSL*KHK 682
G + ++ + +L + YLG P ++ + K+ +++
Sbjct: 1457 MGGASTPAVSEAISEILQVERDRFEDRYLGFPTPEGRMHKGRFQSLQAKIWKRVIQWGEN 1516
Query: 683 SLSFGGRICLIKSVLSSLPLFFFSFFKAPKCIIDQCNKIQRKFLWGGEEG-RGVAWVKWE 741
LS GG+ LIK+V+ ++P++ FK P+ +ID K+ + F W G R W W+
Sbjct: 1517 HLSTGGKEVLIKAVIQAIPVYVMGIFKLPESVIDDLTKLTKNFWWDSMNGQRKTHWKAWD 1576
Query: 742 EICKKKEEGGLGVKDLESFNKALLVKWRWRLLREREWLWCQVLESK 787
+ K K GGLG +D FN+ALL + WRL+ + L +VL++K
Sbjct: 1577 SLTKPKSLGGLGFRDYRLFNQALLARQAWRLITYPDSLCARVLKAK 1622
Database: nr
Posted date: Jul 5, 2005 12:34 AM
Number of letters in database: 863,360,394
Number of sequences in database: 2,540,612
Lambda K H
0.341 0.150 0.502
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,228,035,331
Number of Sequences: 2540612
Number of extensions: 47837503
Number of successful extensions: 135980
Number of sequences better than 10.0: 1271
Number of HSP's better than 10.0 without gapping: 935
Number of HSP's successfully gapped in prelim test: 336
Number of HSP's that attempted gapping in prelim test: 133297
Number of HSP's gapped (non-prelim): 1548
length of query: 787
length of database: 863,360,394
effective HSP length: 136
effective length of query: 651
effective length of database: 517,837,162
effective search space: 337111992462
effective search space used: 337111992462
T: 11
A: 40
X1: 15 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 39 (21.9 bits)
S2: 79 (35.0 bits)
Lotus: description of TM0263.7