BLAST2 result
BLASTP 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TM0262.11
(581 letters)
Database: nr
2,540,612 sequences; 863,360,394 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAR13317.1| gag-pol polyprotein [Phaseolus vulgaris] 182 2e-44
ref|XP_463537.1| putative polyprotein [Oryza sativa (japonica cu... 86 3e-15
emb|CAB77873.1| putative transposon protein [Arabidopsis thalian... 85 7e-15
dbj|BAD18985.1| GAG-POL precursor [Vitis vinifera] 81 8e-14
gb|AAF79618.1| F5M15.26 [Arabidopsis thaliana] gi|25402907|pir||... 72 6e-11
ref|XP_476195.1| putative polyprotein [Oryza sativa (japonica cu... 70 2e-10
ref|NP_909551.1| putative gag-pol precursor [Oryza sativa (japon... 69 4e-10
gb|AAD20433.1| putative retroelement pol polyprotein [Arabidopsi... 69 5e-10
emb|CAE03952.2| OSJNBb0085H11.1 [Oryza sativa (japonica cultivar... 66 3e-09
emb|CAC33017.1| hypothetical protein [Antirrhinum hispanicum] 66 4e-09
gb|AAP53331.1| putative polyprotein [Oryza sativa (japonica cult... 65 5e-09
gb|AAX96424.1| retrotransposon protein, putative, Ty3-gypsy sub-... 64 1e-08
gb|AAD20101.1| putative retroelement pol polyprotein [Arabidopsi... 64 1e-08
emb|CAE76024.1| B1292H11.10 [Oryza sativa (japonica cultivar-gro... 64 2e-08
emb|CAE01996.2| OSJNBb0033G08.12 [Oryza sativa (japonica cultiva... 63 2e-08
gb|AAT77832.1| putative gag-pol precursor [Oryza sativa (japonic... 63 3e-08
gb|AAP53721.1| contains similarity to gag-pol polyprotein [Oryza... 62 5e-08
gb|AAP53628.1| putative retroelement [Oryza sativa (japonica cul... 62 5e-08
gb|AAK50400.1| Putative retroelement [Oryza sativa] 62 5e-08
gb|AAP52839.1| putative retroelement [Oryza sativa (japonica cul... 62 7e-08
>gb|AAR13317.1| gag-pol polyprotein [Phaseolus vulgaris]
Length = 1859
Score = 182 bits (463), Expect = 2e-44
Identities = 137/458 (29%), Positives = 226/458 (48%), Gaps = 50/458 (10%)
Query: 142 ESLKTFLNRFNKEAGDIHYLLPQVRLVLVR*ALHPGPFLTSLDGKKAKTVEEFQARSEKY 201
ESL+TF+NRF+K +I L P++ + + A+ PG F SL + ++E + R+ K+
Sbjct: 320 ESLRTFMNRFSKVCMNIRNLNPEIAMHHLVSAILPGRFTESLIKRPPCNMDELRTRATKF 379
Query: 202 INMEDAAALRASNQADQQKAPEWAKDPGDTTRIRESRRKNQDEKKPKRKRYENYAPLN-S 260
+ +E+ A+ + + P T RE R N+ R+ NY PL
Sbjct: 380 MQIEEHIDYHRKTYAENTDNSKGIRPPTIPTD-RERHRPNRGP------RFHNYTPLIVP 432
Query: 261 LSQILRERASTDLRDRPPPMLTKGDKLDSKRFCEFHDSPDNNTDECLNLKDKVK*LIRAG 320
++L E +L P T + SKR C++H + + T+ C LKDK++ L++AG
Sbjct: 433 RGKVLDEALQIELIPTLRPSQTPPNADTSKR-CQYHRNYGHTTEGCQALKDKIEELVQAG 491
Query: 321 RLSKYVALSYGDLPLPRSPTSRRSPTPPRQRARTPPRH-RTDDRYCRAPQNGRSPDR-RR 378
L K+V + + PRSP P R R+ R RT D + R+ + RS RR
Sbjct: 492 HLRKFVKTT---ITAPRSPQRDHDP-----RERSGRRDDRTRDNHYRSSRRKRSESPIRR 543
Query: 379 SFDRGRIPDRHGRDEVIRHHRMNQIS-----------VGSIAGGFAAGGHTSNSRKSSI* 427
+ + P+R R + +N I+ + IAGGFA GG ++++RK +
Sbjct: 544 TRPKSESPERRSRTKQKVRTVINTIAGPVSLGQPPQEINYIAGGFAGGGCSNSARKKHLR 603
Query: 428 VIMSAMGRPRPR--HSEPSRQKVTIWFSDDDYDTYTGKEDDPIVI----------EALIG 475
I S P R H P I F+D+D+ +DDP+VI + L+
Sbjct: 604 AIQSVHSTPTQRRPHIPP------ITFTDEDFTAIDPSQDDPMVITVEIDKFAIAKVLVD 657
Query: 476 NGSSADVMFYDAYKKLHLSVKDLLLYDHDLVGFTGDRVLPLG*FDTCLSLEDPNICRTVK 535
GSS D+++++ +KK+ + ++ Y+ +VGF+ +RV G D + D + +T+
Sbjct: 658 QGSSVDILYWETFKKMKIPEAEIQPYNEQIVGFSRERVDTKGFIDLYTTFGDDYLSKTIN 717
Query: 536 L--IVVECQTKYNAILGRPSLNSYRAIISTHHLMLKYP 571
+ ++V T YN +LGRPS+N +AI+ST HL +K+P
Sbjct: 718 IRYLLVNANTSYNILLGRPSINRLKAIVSTPHLAMKFP 755
>ref|XP_463537.1| putative polyprotein [Oryza sativa (japonica cultivar-group)]
Length = 2001
Score = 86.3 bits (212), Expect = 3e-15
Identities = 105/487 (21%), Positives = 190/487 (38%), Gaps = 79/487 (16%)
Query: 140 PKESLKTFLNRFNKEAGDIHYLLPQVRLVLVR*ALHPGPFLTSLDGKKAKTVEEFQARSE 199
P E+L++F+ +F++ I ++ ++ + + AL PGP L + KT ++ R E
Sbjct: 449 PGETLRSFIVKFSRVRCQIRHVDDEMLIAAAKRALLPGPLRFDLARNRPKTTKDLFERME 508
Query: 200 KYIN--------MEDAAALRASNQADQQKAPEWAKDPGDTTR---------IRESRRK-- 240
+ E+ A L Q+ ++ + + G+ T R+ ++K
Sbjct: 509 SFARGEEDELRVQEEEAVLLGKKQSKNKQISQGEEQKGENTGKPWKKFKYDYRQDQKKQV 568
Query: 241 -------NQDEKKPKRKRYENYAPLNSLSQILRERASTDLRDRPPPMLTKGD-------K 286
N + +K K + N+ Q + R R + K
Sbjct: 569 NFIGDGSNNEREKGKHQWDNTRRGRNNWGQSGKGRGQWWNSGRGRGRWWNNERGKGRENK 628
Query: 287 LDSKRFCEFHDSPDNNTDECLNLKDKVK*LIRAGRLSKYVALSYGDLPLPRSPTSRRSPT 346
D +FC+ H ++T+EC SK+ + S
Sbjct: 629 PDQTKFCQTHGPGGHSTEECY---------------SKFCHIH---------GPGGHSTE 664
Query: 347 PPRQRARTPPRHRTDDRYCRAPQNGRSPDRRRSFDRGRIPDRHGRDEVIRHHRMNQISVG 406
RQ +H +RY + R + + + ++ +EV + +
Sbjct: 665 ECRQMTHLLEKHV--NRYENKYEGARDQRGQNAIEAPQVMKIEAIEEVPKR------VIN 716
Query: 407 SIAGGFAAGGHTSNSRKSSI*VIMSAMGRPRPRHSEPSRQKVTIWFSDDDYDTYTGKEDD 466
+I GG + G + RK+ + + + +G + + P K I F +D + D
Sbjct: 717 AITGGSSLGVESKRQRKAYVRQV-NHVGTSY-QSNPPVYSKTVISFGPEDAEGILFPHQD 774
Query: 467 PIVIEA----------LIGNGSSADVMFYDAYKKLHLSVKDLLLYDHDLVGFTGDRVLPL 516
P+V+ LI GSSADV+FYDA+KK+ + L L GF G +V +
Sbjct: 775 PLVVSVEIAQCEVQRVLIDGGSSADVLFYDAFKKMQIPEDRLTNAGVPLQGFGGQQVHAI 834
Query: 517 G*FDTCLSLEDPNICRTVKLI--VVECQTKYNAILGRPSLNSYRAIISTHHLMLKYP*AG 574
G + R +++ VV+ +YNAILGR ++N + AII +++ +K P
Sbjct: 835 GKISLQVVFGKGTNVRKEEIVFDVVDMPYQYNAILGRSTINIFEAIIHHNYICMKLPGLR 894
Query: 575 KAVAVRG 581
+ VRG
Sbjct: 895 GVITVRG 901
>emb|CAB77873.1| putative transposon protein [Arabidopsis thaliana]
gi|3377834|gb|AAC28207.1| T24H24.13 gene product
[Arabidopsis thaliana] gi|7487390|pir||T01469
hypothetical protein T24H24.13 - Arabidopsis thaliana
Length = 681
Score = 84.7 bits (208), Expect = 7e-15
Identities = 89/310 (28%), Positives = 140/310 (44%), Gaps = 47/310 (15%)
Query: 286 KLDSKRFCEFHDSPDNNTDECLNLKDKVK*LIRAGRLSKYVALSYGDLPLPRSPTSRRSP 345
+LD ++C++H +T+EC VK LI AG +K + + P P ++P
Sbjct: 379 ELDLGKYCKYHKKRGYSTEECR----AVKKLIAAGGKTKKGSNPKVETPPPDEQEEEQTP 434
Query: 346 TPPRQRARTPPRHRTDDRYCRAP--QNGRSPDRRRSFDRGRIPDRHGRDEVIRHHRMNQI 403
++R RTP T AP +N R P R F R E + R++ I
Sbjct: 435 KQ-KKRERTPEGITTPPP---APHKKNMRFPLRLLKFCRSAT-------EHLSPKRIDFI 483
Query: 404 SVGSIAGGFAAGGHTSNSRKSSI*VIMSAMGRPRPRHSEPSRQKVTIWFSDDDYDTYTGK 463
GS + ++ RK+ + + + P+ Q +T W S+
Sbjct: 484 MGGSQLCNDSINSIKTHQRKAD------SYTKGKSPMMGPNHQ-ITFWESETT--DLNKP 534
Query: 464 EDDPIVIEALIGN----------GSSADVMFYDAYKKLHLSVKDLLLYDHDLVGFTGDRV 513
DD +VI +GN GSS DV+FYDA+K++ +L L GF GD
Sbjct: 535 HDDALVIRIDVGNYELSHIMIDTGSSVDVLFYDAFKRMGHLDSELQGRKTPLTGFAGDTT 594
Query: 514 LPLG*FDTCLSLEDPNICRTVK----LIVVECQTKYNAILGRPSLNSYRAIISTHHLMLK 569
LG +++ P I R V+ +VV + +NAILGRP L++ +A+ ST+H +K
Sbjct: 595 FSLG------TIQLPTIARGVRRLTSFLVVNKKAPFNAILGRPWLHAMKAVPSTYHQCIK 648
Query: 570 YP*AGKAVAV 579
+P + K +AV
Sbjct: 649 FP-SDKGIAV 657
>dbj|BAD18985.1| GAG-POL precursor [Vitis vinifera]
Length = 549
Score = 81.3 bits (199), Expect = 8e-14
Identities = 102/429 (23%), Positives = 168/429 (38%), Gaps = 41/429 (9%)
Query: 142 ESLKTFLNRFNKEAGDIHYLLPQVRLVLVR*ALHPG-PFLTSLDGKKAKTVEEFQARSEK 200
ESL+ F+ RF + + L + + ++ PG PF SL K T+++ R+ K
Sbjct: 114 ESLREFVKRFGQAVLQVEACSMDAVLQIFKRSICPGTPFFESLAKKPPTTMDDLFRRANK 173
Query: 201 YINMEDAAALRASNQADQQKAPEWAKDPGDTTRIRESRRKNQDEKKPKRKRYENYAPLN- 259
Y +ED A+ Q P + +T + ++ ++ P R + PL+
Sbjct: 174 YSMLEDDVRA-ATQQVLVAGRPSGSNTERNTKPPDRPKPSDRRQEGPSRPKMPPLTPLSI 232
Query: 260 SLSQILRERASTDLRDRPPPMLTKGDKLDSKRFCEFHDSPDNNTDECLNLKDKVK*LIRA 319
S ++L P P+ T D R C FH + T+ C + + V+ LI+A
Sbjct: 233 SYEKLLPMIQGLSDFKWPRPIATDPSTRDRSRRCAFHKDHGHTTETCRSFQYLVERLIKA 292
Query: 320 GRLSKYVALSYGDLPLPRSPTSRRSPTPPRQRARTPPRHRTDDRYCRAPQNGRSPDRRRS 379
G L +Y+ G R + +P PR P + Y + D RR
Sbjct: 293 GHLKQYLRTDTGG----RDVSQHNNPGAPR----APVATKAVINYINGGPSDEEYDSRRK 344
Query: 380 FDRGRIPDRHGRDEVIRHHRMNQISVGSIAGGFAAGGHTSNSRKSSI*VIMSAMGRPRPR 439
R +++R + + + SI G G R +I + R
Sbjct: 345 -----------RQKLLRAASIRE-RINSIRPGLTGEG----PRPIDGTIIFPPVDPTRTL 388
Query: 440 HSEPSRQKVTIWFSDDDYDTYTGKEDDPIVIEALIGNGSSADVMFYDAYKKLHLSVKDLL 499
+P R + + D+D V L+ GSSAD++ + S+ L
Sbjct: 389 --QPHRDALILSLEIGDFD----------VRRILVDPGSSADLVQASVVGHMGHSLTGLE 436
Query: 500 LYDHDLVGFTGDRVLPLG*FDTCLSLEDPNICRTVKLIVVECQTKYNAILGRPSLNSYRA 559
L GF G LG D L ++ + V+ VV+ + +N ILGR L+ +A
Sbjct: 437 NPGRILSGFNGSSTTSLG--DIILPVQAGPVTLNVQFSVVQELSPFNIILGRTWLHYMKA 494
Query: 560 IISTHHLML 568
I ST+H M+
Sbjct: 495 IPSTYHQMV 503
>gb|AAF79618.1| F5M15.26 [Arabidopsis thaliana] gi|25402907|pir||H86337 protein
F5M15.26 [imported] - Arabidopsis thaliana
Length = 1838
Score = 71.6 bits (174), Expect = 6e-11
Identities = 96/446 (21%), Positives = 180/446 (39%), Gaps = 45/446 (10%)
Query: 141 KESLKTFLNRFNKEAGDIHYLLPQVRLVLVR*AL-HPGPFLTSLDGKKAKTVEEFQARSE 199
KESL++F++RF +I + + +V +R A+ + F + T+E+ R+
Sbjct: 314 KESLRSFVDRFKLVVTNIT-VPDEAAIVALRNAVWYDSRFRDDITLHAPSTLEDALHRAS 372
Query: 200 KYINMEDAAALRASNQADQQKAPEWAKDPGDTTRIRESRRKNQDEKKPKRKRYENYAPLN 259
++I +E+ + A + K P D I+ D +P++ N +
Sbjct: 373 RFIELEEEKLILARKH-NSTKTPACK----DAVVIKVGP---DDSNEPRQHLDRNPSAGR 424
Query: 260 SLSQILRERASTDLRDRPPPMLTKGDKLDSKRFCEFHDSPDNNTDECLNLKDKVK*LIRA 319
+ L + D + + +CE+H S ++T+ C L+ + ++
Sbjct: 425 KPTSFLVSTETPDAKPWNKYIRDADSPAAGPMYCEYHKSRAHSTENCRFLQGLLMAKYKS 484
Query: 320 GRLSKYVALSYGDLPLPRSPTSRRSPTPPRQRARTPPRHRTDDRYCRAPQNGRSPDRRRS 379
G ++ + R P + ++ ++R T R +D+ + P +
Sbjct: 485 GGIT---------IECDRPPINNKN----QRRNETTARQYLNDQ-TKPPTPAEQGIITSA 530
Query: 380 FDRGRIPDRHGRDEVIRHHRMNQISVGSIAGGFAAGGHTSNS----RKSSI*VIMSAMGR 435
D R+G+ + Q+ V I GG + S RK + V+
Sbjct: 531 DDPAAKRQRNGKAIAAEPVVVRQVHV--IMGGLQNCSDSVRSIKQYRKKAEMVVAWPSST 588
Query: 436 PRPRHSEPSRQKVTIWFSDDDYDTYTGKEDDPIVIE----------ALIGNGSSADVMFY 485
R+ Q I F+D D + +DP+V+E LI GSS D++F
Sbjct: 589 STTRNPN---QSAPISFTDVDLEGLDTPHNDPLVVELIISDSRVTRVLIDTGSSVDLIFK 645
Query: 486 DAYKKLHLSVKDLLLYDHDLVGFTGDRVLPLG*FDTCLSLEDPNICRTVKLIVVECQTKY 545
D ++++ + + L GF GD V+ +G L + + VK +V+ Y
Sbjct: 646 DVLTAMNITDRQIKPVSKPLAGFDGDFVMTIGTIK--LPIFVGGLIAWVKFVVIGKPAVY 703
Query: 546 NAILGRPSLNSYRAIISTHHLMLKYP 571
N ILG P ++ +AI ST+H +K+P
Sbjct: 704 NVILGTPWIHQMQAIPSTYHQCVKFP 729
>ref|XP_476195.1| putative polyprotein [Oryza sativa (japonica cultivar-group)]
gi|46981311|gb|AAT07629.1| putative polyprotein [Oryza
sativa (japonica cultivar-group)]
gi|46981243|gb|AAT07561.1| putative polyprotein [Oryza
sativa (japonica cultivar-group)]
Length = 1459
Score = 70.1 bits (170), Expect = 2e-10
Identities = 53/189 (28%), Positives = 87/189 (45%), Gaps = 14/189 (7%)
Query: 405 VGSIAGGFAAGGHTSNSRKSSI*VIMSAMGRPRPRHSEPSRQKVTIWFSDDDYDTYTGKE 464
+ +I GG + G + RK+ + I + P+ I F +D +
Sbjct: 211 INAITGGSSLGVESKRQRKAYVRQIHHV--GTSYQSVPPAYSNTVISFGPEDAEGILFPH 268
Query: 465 DDPIVIEA----------LIGNGSSADVMFYDAYKKLHLSVKDLLLYDHDLVGFTGDRVL 514
DP+VI L+ GSSADV+FYDA+KK+ + L L GF G +V
Sbjct: 269 QDPLVISVEIAQCEVQRVLVDGGSSADVLFYDAFKKMQIPEDRLTHAGIPLQGFGGHQVH 328
Query: 515 PLG*FDTCLSLEDPNICRTVKLI--VVECQTKYNAILGRPSLNSYRAIISTHHLMLKYP* 572
+G + R +++ VV+ +YNA+LGR ++N + AII +++ +K P
Sbjct: 329 TIGKISLQVVFGGGENKRREEVVFDVVDMPYQYNAVLGRSTINIFEAIIHHNYICMKLPG 388
Query: 573 AGKAVAVRG 581
++VRG
Sbjct: 389 PKGVISVRG 397
>ref|NP_909551.1| putative gag-pol precursor [Oryza sativa (japonica cultivar-group)]
gi|27764661|gb|AAO23086.1| putative gag-pol precursor
[Oryza sativa (japonica cultivar-group)]
Length = 971
Score = 68.9 bits (167), Expect = 4e-10
Identities = 101/471 (21%), Positives = 175/471 (36%), Gaps = 105/471 (22%)
Query: 140 PKESLKTFLNRFNKEAGDIHYLLPQVRLVLVR*ALHPGPFLTSLDGKKAKTVE------- 192
P ES++ ++ RF++ + + + L G + K+ +T+E
Sbjct: 464 PGESIREYMRRFSQARCQVEDITEASVINAASAGLLEGELTRKIANKEPQTLEHLVRIID 523
Query: 193 -----EFQARSEKYINME-DAAALRASNQADQQKAPEWAKDPGDTTRIRESRRKNQ---- 242
E ++ + I E D A++ A+ Q K P + P + R R
Sbjct: 524 GFAKSEEDSKRRQAIQTEYDKASIAAAQAQAQVKPPRQGQAPMTWRKFRTDRAGKAVMAV 583
Query: 243 DEKKPKRKRYENYAPLNSLSQILRERASTDLRDRPPPMLTKGDKLDSKRFCEFHDSPDNN 302
+E + RK ++ N Q +R++ DL +C FH +
Sbjct: 584 EEVQALRKEFDAQQASNH-QQPVRKKVRKDL------------------YCAFHGRSSHT 624
Query: 303 TDECLNLKDKVK*LIRAGRLSKYVALSYGDLPLPRSPTSRRSPTPPRQRARTPPRHRTDD 362
T++C N++ + G + + PR + TPP ++ R + R
Sbjct: 625 TEQCQNIRQR-------GNAQDTRSQQGTTIEAPREAAQEQ--TPPVEQ-RQDAQRRVIQ 674
Query: 363 RYCRAPQNGRSPDRRRSFDRGRIPDRHGRDEVIRHHRMNQISVGSIAGGFAAGGHTSNSR 422
RA G+ R++ +M+ +V SI
Sbjct: 675 VITRADPPGQLSKRQK--------------------KMHIRAVHSI-------------- 700
Query: 423 KSSI*VIMSAMGRPRPRHSEPSRQKVTIWFSDDDYDTYTGKEDDPIVIEA---------- 472
++ G+ P++ I F +D + DP+VI A
Sbjct: 701 --------TSAGKRAPQYVNQ-----LISFGPEDAEGVMFPHQDPLVISAEIAGFEVWRI 747
Query: 473 LIGNGSSADVMFYDAYKKLHLSVKDLLLYDHDLVGFTGDRVLPLG*FDTCLSLEDPNICR 532
L+ GSSADV+F +AY K+ L + L + GF G+ V LG ++ R
Sbjct: 748 LVDGGSSADVIFVEAYAKMGLPTQALTPAPASIRGFGGEAVQVLGQALLLIAFGSGENRR 807
Query: 533 TVKLI--VVECQTKYNAILGRPSLNSYRAIISTHHLMLKYP*AGKAVAVRG 581
+++ VV+ YNAILGR +LN + AI ++L LK P + V+G
Sbjct: 808 EEQVLFDVVDIPYNYNAILGRATLNKFEAISHHNYLKLKMPGPAGVIVVKG 858
>gb|AAD20433.1| putative retroelement pol polyprotein [Arabidopsis thaliana]
gi|25411489|pir||H84506 probable retroelement pol
polyprotein [imported] - Arabidopsis thaliana
Length = 889
Score = 68.6 bits (166), Expect = 5e-10
Identities = 54/148 (36%), Positives = 78/148 (52%), Gaps = 27/148 (18%)
Query: 448 VTIWFSD-DDYDTYTGKEDDPIVIEALIGN----------GSSADVMFYDAYKKL-HLSV 495
+T W S+ D D DD +VI +GN GSS DV+FYDA+K+ HL
Sbjct: 47 ITFWESEITDLDK---PHDDALVIRIDVGNYELSCIMVDTGSSVDVLFYDAFKRTGHLDS 103
Query: 496 KDLLLYDHDLVGFTGDRVLPLG*FDTCLSLEDPNICRTVK----LIVVECQTKYNAILGR 551
K L L GF GD +G +++ P I R V+ +VV+ + +NAILGR
Sbjct: 104 K-LQGRKTPLTGFAGDTTFSIG------TIQLPTIARGVRQLTNFLVVDKKAPFNAILGR 156
Query: 552 PSLNSYRAIISTHHLMLKYP*AGKAVAV 579
P L+ +A+ ST+H +K+P + K +AV
Sbjct: 157 PWLHVMKAVPSTYHQCIKFP-SYKGIAV 183
>emb|CAE03952.2| OSJNBb0085H11.1 [Oryza sativa (japonica cultivar-group)]
gi|50923259|ref|XP_471990.1| OSJNBb0085H11.1 [Oryza
sativa (japonica cultivar-group)]
Length = 1605
Score = 66.2 bits (160), Expect = 3e-09
Identities = 49/144 (34%), Positives = 70/144 (48%), Gaps = 12/144 (8%)
Query: 450 IWFSDDDYDTYTGKEDDPIVIEA----------LIGNGSSADVMFYDAYKKLHLSVKDLL 499
I F +D + DP+VI A L+G GSSADV+F +AY K+ L + L
Sbjct: 481 ISFGSEDAEGVMFPHQDPLVISAERAGFEVRRILVGRGSSADVIFAEAYAKMGLPTQALT 540
Query: 500 LYDHDLVGFTGDRVLPLG*FDTCLSLEDPNICRTVKLI--VVECQTKYNAILGRPSLNSY 557
L GF G+ V LG ++L R +++ VV+ YNAI GR +LN +
Sbjct: 541 PAPASLRGFGGEAVQVLGQALLLIALGSGENRREEQVLFDVVDIPYNYNAIFGRATLNKF 600
Query: 558 RAIISTHHLMLKYP*AGKAVAVRG 581
AI ++L LK P + V+G
Sbjct: 601 EAISHHNYLKLKMPGLTGVIVVKG 624
>emb|CAC33017.1| hypothetical protein [Antirrhinum hispanicum]
Length = 1455
Score = 65.9 bits (159), Expect = 4e-09
Identities = 48/151 (31%), Positives = 71/151 (46%), Gaps = 14/151 (9%)
Query: 435 RPRPRHSEPS-RQKVTIWFSDDDYDTYTGKEDDPIVIEA----------LIGNGSSADVM 483
RP R E R++ ++D ++ DDPI+I+A LI GSS DVM
Sbjct: 454 RPGERREESRPREQAQEHCKGGEFDRHSPPHDDPIIIQATIHGAKVSRVLIDTGSSVDVM 513
Query: 484 FYDAYKKLHLSVKDLLLYDHDLVGFTGDRVLPLG*FDTCLSLEDPNICRTVKL---IVVE 540
F + L L ++ ++ LVGF G LG +S ++ RT ++ I+
Sbjct: 514 FLPTFLALGLKIEQIVPETTPLVGFDGSTSETLGSIPLLMSWGRGHLRRTKEIRFWIINA 573
Query: 541 CQTKYNAILGRPSLNSYRAIISTHHLMLKYP 571
YN I GRPSL + A+ S HL +K+P
Sbjct: 574 LAKTYNVICGRPSLCLFEAVPSVLHLKVKFP 604
Score = 58.9 bits (141), Expect = 4e-07
Identities = 52/227 (22%), Positives = 93/227 (40%), Gaps = 18/227 (7%)
Query: 142 ESLKTFLNRFNKEAGDIHYLLPQVRLVLVR*ALHPGPFLTSLDGKKAKTVEEFQARSEKY 201
ESL+ ++ RF D+ ++ P + V F SL G+ A+++EE R+E+Y
Sbjct: 268 ESLREYMRRFANTVIDVRHVGPHILSEFVAQGTRSVEFANSLVGRPARSLEELMHRAERY 327
Query: 202 INMEDAAALRASNQADQQKAPEWAKDPGDTTRIRESRRKNQDEKKPKRKRYENYAPLNSL 261
+ ED + Q G R R R N ++ +RY PL L
Sbjct: 328 MLQEDTRLAKLGIQ-------------GHEDRSRNRRGDNTHGRQDMVRRYLEPLPLTPL 374
Query: 262 ----SQILRERASTDLRDRPPPMLTKGDKLDSKRFCEFHDSPDNNTDECLNLKDKVK*LI 317
++++ PP + ++C FH S + T+ LK +++ L+
Sbjct: 375 KISNTEVMNIMGGNQDLRCPPQARNFEAMRHTGKWCLFHRSWGHRTENYDQLKIEIERLL 434
Query: 318 RAGRLSKYVALSYGDLPLPRSPTSRRSPTPPRQRARTPPRHRTDDRY 364
+ G L +++ P P RR + PR++A+ + DR+
Sbjct: 435 KLGYLRRFIK-RMEVYPRNERPGERREESRPREQAQEHCKGGEFDRH 480
>gb|AAP53331.1| putative polyprotein [Oryza sativa (japonica cultivar-group)]
gi|37533484|ref|NP_921044.1| putative polyprotein [Oryza
sativa (japonica cultivar-group)]
gi|18057150|gb|AAL58173.1| putative polyprotein [Oryza
sativa (japonica cultivar-group)]
Length = 1931
Score = 65.5 bits (158), Expect = 5e-09
Identities = 50/157 (31%), Positives = 74/157 (46%), Gaps = 15/157 (9%)
Query: 440 HSEPSRQKVT---IWFSDDDYDTYTGKEDDPIVIEA----------LIGNGSSADVMFYD 486
H +P+R+K I F +D + DP+VI A L+ GSSADV+F +
Sbjct: 759 HQQPARKKYLNQLISFGPEDAEGVMFPHQDPLVISAEIAGFEVRRILVDGGSSADVIFAE 818
Query: 487 AYKKLHLSVKDLLLYDHDLVGFTGDRVLPLG*FDTCLSLEDPNICRTVKLI--VVECQTK 544
AY + L + L L GF G+ V LG ++ R +++ VV+
Sbjct: 819 AYATMGLPTQSLTPAPTSLHGFGGEAVQVLGQALLLIAFGSGENRREEQILFDVVDIPYN 878
Query: 545 YNAILGRPSLNSYRAIISTHHLMLKYP*AGKAVAVRG 581
YNAI GR +LN + AI ++L LK P + V+G
Sbjct: 879 YNAIFGRATLNKFEAICHHNYLKLKMPGPTWVIVVKG 915
>gb|AAX96424.1| retrotransposon protein, putative, Ty3-gypsy sub-class [Oryza
sativa (japonica cultivar-group)]
Length = 1587
Score = 64.3 bits (155), Expect = 1e-08
Identities = 49/164 (29%), Positives = 76/164 (45%), Gaps = 17/164 (10%)
Query: 430 MSAMGRPRPRHSEPSRQKVTIWFSDDDYDTYTGKEDDPIVIEA----------LIGNGSS 479
+++MG P++ I F +D + DP+VI A L+ GSS
Sbjct: 568 ITSMGEGAPQYLNQ-----LISFGPEDAEGVMFSHQDPLVISAEIAGFEVRRILVDGGSS 622
Query: 480 ADVMFYDAYKKLHLSVKDLLLYDHDLVGFTGDRVLPLG*FDTCLSLEDPNICRTVKLI-- 537
ADV+F +AY K+ L + L L GF G+ V LG ++ R +++
Sbjct: 623 ADVIFAEAYAKMELPTQTLTPAPASLRGFGGEAVQVLGQALLLIAFGSGENGREEQILFD 682
Query: 538 VVECQTKYNAILGRPSLNSYRAIISTHHLMLKYP*AGKAVAVRG 581
VV+ YNAI GR +LN + A+ ++L LK P + V+G
Sbjct: 683 VVDIPYNYNAIFGRATLNKFEAVSHHNYLKLKMPSPAGVIVVKG 726
>gb|AAD20101.1| putative retroelement pol polyprotein [Arabidopsis thaliana]
gi|25411560|pir||E84516 probable retroelement pol
polyprotein [imported] - Arabidopsis thaliana
Length = 764
Score = 63.9 bits (154), Expect = 1e-08
Identities = 95/402 (23%), Positives = 158/402 (38%), Gaps = 59/402 (14%)
Query: 210 LRASNQADQQKAPEWAKDPGDTTRIRESRRKN-----------QDEKKPKRKRYE-NYAP 257
LR++ QA QK + + +I E +K + + K K K YE N P
Sbjct: 97 LRSTIQAMSQKVHQATSSTPELEQILEKNQKTPFAVHISNVSVRHDNKIKLKSYEGNTDP 156
Query: 258 LNSLSQILRERASTDLRDRPPPMLTKGDKLDSKRFCEFHDSPDNNTDECLNLKDKVK*LI 317
LS +T P ++LD ++C+FH ++T C +L+ +
Sbjct: 157 QQFLSSF---SVATQRDHFHPSEAEVENRLD--QYCDFHKRSGHSTAACRHLQSIL---- 207
Query: 318 RAGRLSKYVALSYGDLPLPRSPTSRRSPTPPRQRARTPPR--HRTDDRYCRAPQNGRSPD 375
L+KY GD+ + + T + R HR P GR +
Sbjct: 208 ----LNKY---KKGDIEVQHRQYKSHNNTYAARGGRDGNNVFHRL------GPHTGRQQE 254
Query: 376 RRRSFDRGRIPD----RHGRDEVIRHHR--MNQISVGSIAGGFAAGGHTSNSRKSSI*VI 429
+ + R PD + R+ +H+ + + V I GG A + S K I
Sbjct: 255 APPANEEERHPDMEPPKKNRENDQQHNDAPVPRRRVNMIMGGLTACRDSFRSIKEYI--- 311
Query: 430 MSAMGRPRPRHSEPSRQKVTIWFSDDDYDTYTGKEDDPIVIEALIGN----------GSS 479
G S +++ + F+ +D +DP+VIE IG GSS
Sbjct: 312 --KSGAATLWSSPATKEMTPLTFTSEDLFGVDLPHNDPLVIELHIGESEVTRILIDTGSS 369
Query: 480 ADVMFYDAYKKLHLSVKDLLLYDHDLVGFTGDRVLPLG*FDTCLSLEDPNICRTVKLIVV 539
+V+F D +K+ + + + L GF G+ ++ G + L K +VV
Sbjct: 370 VNVVFKDVLQKMKVHDRHIKPSVRPLTGFDGNTMMTNGTIKLPIYLGGAATWH--KFVVV 427
Query: 540 ECQTKYNAILGRPSLNSYRAIISTHHLMLKYP*AGKAVAVRG 581
+ T YN ILG P ++ +AI S++H +K P + +RG
Sbjct: 428 DKPTIYNIILGTPWIHDMQAIPSSYHQCIKIPTSIGIETIRG 469
>emb|CAE76024.1| B1292H11.10 [Oryza sativa (japonica cultivar-group)]
Length = 1326
Score = 63.5 bits (153), Expect = 2e-08
Identities = 100/483 (20%), Positives = 170/483 (34%), Gaps = 92/483 (19%)
Query: 131 GNVGFK*ASPKESLKTFLNRFNKEAGDIHYLLPQVRLVLVR*ALHPGPFLTSLDGKKAKT 190
G+ K P ES++ ++ RF++ + + L G + K+ +T
Sbjct: 419 GDENTKAKRPGESIREYMRRFSQARCQVQDKTEASVINAASAGLLEGELTRKIANKELQT 478
Query: 191 VEEFQARSEKYINMEDAAALRASNQADQQKAPEWAK---------DPGDTTRIRESRRKN 241
+E + Y E+ + R + QA+ K A +P T IR+ + N
Sbjct: 479 LEHLLRIIDGYARGEEDSKRRQAIQAEYDKVSVAATQAQVQAQIAEPAPLT-IRQPQPAN 537
Query: 242 QDE-----------KKPKRKRYENYAPLNSLSQILRERASTDLRDRPPPMLTKGDKLDSK 290
Q++ +K + R Q LR+ ++ K K+
Sbjct: 538 QEQPPRPGQAPSTWRKFRNDRVRKTVMAVEDVQALRKEFDAQQAGSHQQLVRK--KVRKD 595
Query: 291 RFCEFHDSPDNNTDECLNLKDKVK*LIRAGRLSKYVALSYGDLPLPRSPTSRRSPTPPRQ 350
+C +H + T++C N+ RQ
Sbjct: 596 LYCAYHGRSSHTTEQCRNI---------------------------------------RQ 616
Query: 351 RARTPPRHRTDDRYCRAPQNGRSPDRRRSFDRGRIPDRHGRDEVIRHHRMNQISVGSIAG 410
R + PQ G + + R + + P R ++ R R+ Q+ +
Sbjct: 617 RGNAQDQR---------PQQGAAIEAPREAAQEQAPPIEQRQDIQR--RVIQVITRADPP 665
Query: 411 GFAAGGHTSNSRKSSI*VIMSAMGRPRPRHSEPSRQKVTIWFSDDDYDTYTGKEDDPIVI 470
+ ++ +I + G PR + + S F +D + DP+VI
Sbjct: 666 VQQSKRQKKMQLRTVYNIIAAGKGAPRYLNQQIS-------FGPEDVEGVLFPHQDPLVI 718
Query: 471 EA----------LIGNGSSADVMFYDAYKKLHLSVKDLLLYDHDLVGFTGDRVLPLG*FD 520
A L+ GSSADV+F +AY K+ L L L GF G V LG
Sbjct: 719 SAKVAGFEVRRILVDRGSSADVIFAEAYAKMGLPTLALTEAPASLRGFGGKAVQVLGQVQ 778
Query: 521 TCLSLEDPNICRTVKLI--VVECQTKYNAILGRPSLNSYRAIISTHHLMLKYP*AGKAVA 578
++ R +++ VV YNAI GR +LN + AI ++L LK P +
Sbjct: 779 LVIAFGTGENRREEQILFDVVNIPYNYNAIFGRATLNMFEAISHHNYLKLKMPGPTGVIV 838
Query: 579 VRG 581
V+G
Sbjct: 839 VKG 841
>emb|CAE01996.2| OSJNBb0033G08.12 [Oryza sativa (japonica cultivar-group)]
gi|50930473|ref|XP_474764.1| OSJNBb0033G08.12 [Oryza
sativa (japonica cultivar-group)]
Length = 1847
Score = 63.2 bits (152), Expect = 2e-08
Identities = 47/144 (32%), Positives = 68/144 (46%), Gaps = 12/144 (8%)
Query: 450 IWFSDDDYDTYTGKEDDPIVIEA----------LIGNGSSADVMFYDAYKKLHLSVKDLL 499
I F +D + DP+VI A L+ GSSADV+F +AY K+ L + L
Sbjct: 766 ISFGPEDAEEVMFPHQDPLVISAEIAGFEVRRILVDGGSSADVIFAEAYAKIGLPTQALT 825
Query: 500 LYDHDLVGFTGDRVLPLG*FDTCLSLEDPNICRTVKLI--VVECQTKYNAILGRPSLNSY 557
L GF G+ V LG ++ R +++ VV+ YNAI GR +LN +
Sbjct: 826 PAPASLRGFGGEAVQVLGQALLLIAFGSGENRREEQILFDVVDIPYNYNAIFGRATLNKF 885
Query: 558 RAIISTHHLMLKYP*AGKAVAVRG 581
AI ++L LK P + V+G
Sbjct: 886 EAIFHHNYLKLKMPGPTGVIVVKG 909
>gb|AAT77832.1| putative gag-pol precursor [Oryza sativa (japonica cultivar-group)]
Length = 1631
Score = 62.8 bits (151), Expect = 3e-08
Identities = 47/144 (32%), Positives = 68/144 (46%), Gaps = 12/144 (8%)
Query: 450 IWFSDDDYDTYTGKEDDPIVIEA----------LIGNGSSADVMFYDAYKKLHLSVKDLL 499
I F +D + DP+VI A L+ GSSADV+F +AY K+ L + L
Sbjct: 534 ISFGPEDAEGVMFPHQDPLVISAEIAGFEVRRILVDGGSSADVIFAEAYAKMGLPTQALT 593
Query: 500 LYDHDLVGFTGDRVLPLG*FDTCLSLEDPNICRTVKLI--VVECQTKYNAILGRPSLNSY 557
L GF G+ V LG ++ R +++ VV+ YNAI GR +LN +
Sbjct: 594 PAPASLRGFGGEAVRVLGQALLLIAFGSGENRREEQILFDVVDIPYNYNAIFGRATLNKF 653
Query: 558 RAIISTHHLMLKYP*AGKAVAVRG 581
AI ++L LK P + V+G
Sbjct: 654 EAISHHNYLKLKMPGPAGVIVVKG 677
>gb|AAP53721.1| contains similarity to gag-pol polyprotein [Oryza sativa (japonica
cultivar-group)] gi|37534264|ref|NP_921434.1| contains
similarity to gag-pol polyprotein [Oryza sativa
(japonica cultivar-group)]
Length = 1260
Score = 62.0 bits (149), Expect = 5e-08
Identities = 49/158 (31%), Positives = 69/158 (43%), Gaps = 12/158 (7%)
Query: 436 PRPRHSEPSRQKVTIWFSDDDYDTYTGKEDDPIVIEA----------LIGNGSSADVMFY 485
P+ P I F +D + DP+VI A L+ GSSADV+F
Sbjct: 374 PKQGEGAPQYLNQQISFGPEDAEGVMFPHQDPLVISAEIAGFEVRRILVDGGSSADVIFA 433
Query: 486 DAYKKLHLSVKDLLLYDHDLVGFTGDRVLPLG*FDTCLSLEDPNICRTVKLI--VVECQT 543
+AY K+ L L L GF G V LG ++ R +++ VV+
Sbjct: 434 EAYAKMGLPTLALTPAPASLRGFGGKAVQVLGQAQLLVAFGTGENRREEQVLFDVVDIPY 493
Query: 544 KYNAILGRPSLNSYRAIISTHHLMLKYP*AGKAVAVRG 581
YNAI GR +LN + AI ++L LK P + V+G
Sbjct: 494 NYNAIFGRATLNKFEAISHHNYLKLKMPSPTGVIVVKG 531
>gb|AAP53628.1| putative retroelement [Oryza sativa (japonica cultivar-group)]
gi|37534078|ref|NP_921341.1| putative retroelement
[Oryza sativa (japonica cultivar-group)]
gi|19881722|gb|AAM01123.1| Putative retroelement [Oryza
sativa (japonica cultivar-group)]
Length = 1292
Score = 62.0 bits (149), Expect = 5e-08
Identities = 47/144 (32%), Positives = 68/144 (46%), Gaps = 12/144 (8%)
Query: 450 IWFSDDDYDTYTGKEDDPIVIEA----------LIGNGSSADVMFYDAYKKLHLSVKDLL 499
I F +D + DP+VI A L+ GSSADV+F +AY K+ L + L
Sbjct: 345 ISFGPEDAEGVIFPHQDPLVISAEIAGFEVRRILVDGGSSADVIFAEAYAKMGLPTQALT 404
Query: 500 LYDHDLVGFTGDRVLPLG*FDTCLSLEDPNICRTVKLI--VVECQTKYNAILGRPSLNSY 557
L GF G+ V LG ++ R +++ VV+ YNAI GR +LN +
Sbjct: 405 PAPVSLRGFGGEAVQVLGQTLLLIAFGSGENRREEQILFDVVDIPYNYNAIFGRATLNKF 464
Query: 558 RAIISTHHLMLKYP*AGKAVAVRG 581
AI ++L LK P + V+G
Sbjct: 465 EAISHHNYLKLKMPGPTAVIVVKG 488
>gb|AAK50400.1| Putative retroelement [Oryza sativa]
Length = 1291
Score = 62.0 bits (149), Expect = 5e-08
Identities = 47/144 (32%), Positives = 68/144 (46%), Gaps = 12/144 (8%)
Query: 450 IWFSDDDYDTYTGKEDDPIVIEA----------LIGNGSSADVMFYDAYKKLHLSVKDLL 499
I F +D + DP+VI A L+ GSSADV+F +AY K+ L + L
Sbjct: 412 ISFGPEDAEGVIFPHQDPLVISAEIAGFEVRRILVDGGSSADVIFAEAYAKMGLPTQALT 471
Query: 500 LYDHDLVGFTGDRVLPLG*FDTCLSLEDPNICRTVKLI--VVECQTKYNAILGRPSLNSY 557
L GF G+ V LG ++ R +++ VV+ YNAI GR +LN +
Sbjct: 472 PAPVSLRGFGGEAVQVLGQTLLLIAFGSGENRREEQILFDVVDIPYNYNAIFGRATLNKF 531
Query: 558 RAIISTHHLMLKYP*AGKAVAVRG 581
AI ++L LK P + V+G
Sbjct: 532 EAISHHNYLKLKMPGPTAVIVVKG 555
>gb|AAP52839.1| putative retroelement [Oryza sativa (japonica cultivar-group)]
gi|37532500|ref|NP_920552.1| putative retroelement
[Oryza sativa (japonica cultivar-group)]
gi|13992677|gb|AAK51571.1| Putative retroelement [Oryza
sativa]
Length = 1497
Score = 61.6 bits (148), Expect = 7e-08
Identities = 46/144 (31%), Positives = 69/144 (46%), Gaps = 12/144 (8%)
Query: 450 IWFSDDDYDTYTGKEDDPIVIEA----------LIGNGSSADVMFYDAYKKLHLSVKDLL 499
I F +D + DP+VI A L+ GSSAD++F +AY K+ L + L
Sbjct: 425 ISFGPEDAEGVLFPHQDPLVISAEIAGFEVRRILVDEGSSADIIFAEAYAKMGLPTQALT 484
Query: 500 LYDHDLVGFTGDRVLPLG*FDTCLSLEDPNICRTVKLI--VVECQTKYNAILGRPSLNSY 557
L GF G+ V LG ++ + R +++ VV+ YNAI GR +LN +
Sbjct: 485 PAPASLRGFGGEPVQVLGQALLLIAFGSGDNRREEQILFDVVDIPYNYNAIFGRATLNKF 544
Query: 558 RAIISTHHLMLKYP*AGKAVAVRG 581
AI ++L LK P + V+G
Sbjct: 545 EAISHHNYLKLKMPGPTGVIVVKG 568
Database: nr
Posted date: Jul 5, 2005 12:34 AM
Number of letters in database: 863,360,394
Number of sequences in database: 2,540,612
Lambda K H
0.325 0.142 0.435
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,063,504,290
Number of Sequences: 2540612
Number of extensions: 49032457
Number of successful extensions: 191477
Number of sequences better than 10.0: 699
Number of HSP's better than 10.0 without gapping: 216
Number of HSP's successfully gapped in prelim test: 491
Number of HSP's that attempted gapping in prelim test: 188039
Number of HSP's gapped (non-prelim): 2641
length of query: 581
length of database: 863,360,394
effective HSP length: 134
effective length of query: 447
effective length of database: 522,918,386
effective search space: 233744518542
effective search space used: 233744518542
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 78 (34.7 bits)
Lotus: description of TM0262.11