BLAST2 result
BLASTP 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TM0262.10
(145 letters)
Database: nr
2,540,612 sequences; 863,360,394 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
dbj|BAC41840.1| unknown protein [Arabidopsis thaliana] gi|929414... 235 1e-61
gb|AAB47766.1| SNF5 homolog BSH [Arabidopsis thaliana] 232 1e-60
ref|XP_467545.1| putative SNF5 homolog BSH (bsh) [Oryza sativa (... 94 9e-19
gb|AAH85668.1| Zgc:92517 [Danio rerio] gi|55925556|ref|NP_001007... 78 5e-14
emb|CAG89206.1| unnamed protein product [Debaryomyces hansenii C... 77 7e-14
gb|AAH83229.1| SWI/SNF-related matrix associated protein [Danio ... 77 7e-14
emb|CAB56700.1| SWI/SNF-related matrix associated protein [Danio... 77 7e-14
gb|AAH76714.1| SWI/SNF related, matrix associated, actin depende... 77 1e-13
gb|AAH72865.1| MGC80271 protein [Xenopus laevis] 76 1e-13
dbj|BAB12428.1| Integrase interactor [Mus musculus] 76 1e-13
dbj|BAB12427.1| Integrase interactor 1 [Mus musculus] 76 1e-13
emb|CAA09759.1| Ini1b [Homo sapiens] gi|31338810|dbj|BAC77068.1|... 75 3e-13
ref|NP_035548.1| SWI/SNF related, matrix associated, actin depen... 75 3e-13
gb|AAA81905.1| Ini1 75 3e-13
ref|XP_342120.2| PREDICTED: similar to SWI/SNF related, matrix a... 75 3e-13
ref|XP_543533.1| PREDICTED: similar to SWI/SNF related, matrix a... 75 3e-13
ref|XP_515023.1| PREDICTED: similar to SWI/SNF related, matrix a... 75 3e-13
emb|CAG31903.1| hypothetical protein [Gallus gallus] 75 3e-13
dbj|BAB14784.1| unnamed protein product [Homo sapiens] 75 3e-13
ref|XP_415225.1| PREDICTED: similar to SWI/SNF related, matrix a... 75 3e-13
>dbj|BAC41840.1| unknown protein [Arabidopsis thaliana] gi|9294147|dbj|BAB02049.1|
SNF5, transcription regulatory protein homolog BSH
[Arabidopsis thaliana] gi|18401571|ref|NP_566581.1|
transcription regulatory protein SNF5, putative (BSH)
[Arabidopsis thaliana]
Length = 240
Score = 235 bits (600), Expect = 1e-61
Identities = 112/145 (77%), Positives = 127/145 (87%)
Query: 1 MKTPASVFYRNPVKFRMPTAENLVPIRLDIEIDAKRYKDAFTWNPSDPDHEVGVFARRTV 60
MK S ++ PVKFRMPTAENLVPIRLDI+ + +RYKDAFTWNPSDPD+EV +FA+RTV
Sbjct: 1 MKGLVSTGWKGPVKFRMPTAENLVPIRLDIQFEGQRYKDAFTWNPSDPDNEVVIFAKRTV 60
Query: 61 KDLKLPPPFVTQIAQSIESQLAEFRSYEGQDMYAGEKIIPIKLDLCVNHMLVKDQFLWDL 120
KDLKLP FVTQIAQSI+SQL++FR+YEGQDMY GEKIIPIKLDL VNH L+KDQFLWDL
Sbjct: 61 KDLKLPYAFVTQIAQSIQSQLSDFRAYEGQDMYTGEKIIPIKLDLRVNHTLIKDQFLWDL 120
Query: 121 NNFESDLEELARIFCKDMGIEDPEV 145
NNFESD EE AR CKD+G+EDPEV
Sbjct: 121 NNFESDPEEFARTLCKDLGVEDPEV 145
>gb|AAB47766.1| SNF5 homolog BSH [Arabidopsis thaliana]
Length = 240
Score = 232 bits (592), Expect = 1e-60
Identities = 111/145 (76%), Positives = 126/145 (86%)
Query: 1 MKTPASVFYRNPVKFRMPTAENLVPIRLDIEIDAKRYKDAFTWNPSDPDHEVGVFARRTV 60
MK S ++ PVKFRMPTAENLVPIRLDI+ + +RYKDAFTWNPSDPD+EV +FA+RTV
Sbjct: 1 MKGLVSTGWKGPVKFRMPTAENLVPIRLDIQFEGQRYKDAFTWNPSDPDNEVVIFAKRTV 60
Query: 61 KDLKLPPPFVTQIAQSIESQLAEFRSYEGQDMYAGEKIIPIKLDLCVNHMLVKDQFLWDL 120
KDLKLP FVTQIAQSI+SQL++FR+YEGQDMY GEKIIPIKLDL VN L+KDQFLWDL
Sbjct: 61 KDLKLPYAFVTQIAQSIQSQLSDFRAYEGQDMYTGEKIIPIKLDLRVNQTLIKDQFLWDL 120
Query: 121 NNFESDLEELARIFCKDMGIEDPEV 145
NNFESD EE AR CKD+G+EDPEV
Sbjct: 121 NNFESDPEEFARTLCKDLGVEDPEV 145
>ref|XP_467545.1| putative SNF5 homolog BSH (bsh) [Oryza sativa (japonica
cultivar-group)] gi|45736003|dbj|BAD13031.1| putative
SNF5 homolog BSH (bsh) [Oryza sativa (japonica
cultivar-group)]
Length = 171
Score = 93.6 bits (231), Expect = 9e-19
Identities = 40/70 (57%), Positives = 54/70 (77%)
Query: 76 SIESQLAEFRSYEGQDMYAGEKIIPIKLDLCVNHMLVKDQFLWDLNNFESDLEELARIFC 135
SI+ QL EFRSYEG++M EKI+P+K+DL +N+ +++DQFLWD+ N +SD EE AR C
Sbjct: 4 SIQGQLTEFRSYEGEEMQIREKIVPLKIDLRINNTVIRDQFLWDIGNLDSDPEEFARTLC 63
Query: 136 KDMGIEDPEV 145
D+ I DPEV
Sbjct: 64 DDLNITDPEV 73
Score = 41.6 bits (96), Expect = 0.004
Identities = 25/71 (35%), Positives = 36/71 (50%), Gaps = 1/71 (1%)
Query: 17 MPTAENLVPIRLDIEIDAKRYKDAFTWNPSDPDHEVGVFARRTVKDLKLPPPFV-TQIAQ 75
M E +VP+++D+ I+ +D F W+ + D + FAR DL + P V IA
Sbjct: 20 MQIREKIVPLKIDLRINNTVIRDQFLWDIGNLDSDPEEFARTLCDDLNITDPEVGPAIAV 79
Query: 76 SIESQLAEFRS 86
SI QL E S
Sbjct: 80 SIREQLYEIAS 90
>gb|AAH85668.1| Zgc:92517 [Danio rerio] gi|55925556|ref|NP_001007297.1| zgc:92517
[Danio rerio]
Length = 373
Score = 77.8 bits (190), Expect = 5e-14
Identities = 45/121 (37%), Positives = 71/121 (58%), Gaps = 2/121 (1%)
Query: 21 ENLVPIRLDIEIDAKRYKDAFTWNPSDPDHEVGVFARRTVKDLKLPP-PFVTQIAQSIES 79
E LVPIRLD+EID ++ +DAFTWN ++ +FA DL L P FV IA +I
Sbjct: 172 EVLVPIRLDMEIDGQKLRDAFTWNMNEKLMTPEMFAEILCDDLDLSPLTFVPAIASAIRQ 231
Query: 80 QLAEFRSYEGQDMYAGEKIIPIKLDLCVNHMLVKDQFLWDLNNFESDLEELARIFCKDMG 139
Q+ + + D +++I IKL++ V ++ + DQF WD++ E+ E+ A C ++G
Sbjct: 232 QIESYPTDSILDEQMDQRVI-IKLNIHVGNISLVDQFEWDMSEKENSPEKFALKLCSELG 290
Query: 140 I 140
+
Sbjct: 291 L 291
Score = 35.8 bits (81), Expect = 0.22
Identities = 21/59 (35%), Positives = 31/59 (51%)
Query: 24 VPIRLDIEIDAKRYKDAFTWNPSDPDHEVGVFARRTVKDLKLPPPFVTQIAQSIESQLA 82
V I+L+I + D F W+ S+ ++ FA + +L L FVT IA SI QL+
Sbjct: 250 VIIKLNIHVGNISLVDQFEWDMSEKENSPEKFALKLCSELGLGGEFVTTIAYSIRGQLS 308
>emb|CAG89206.1| unnamed protein product [Debaryomyces hansenii CBS767]
gi|50424545|ref|XP_460861.1| unnamed protein product
[Debaryomyces hansenii]
Length = 577
Score = 77.4 bits (189), Expect = 7e-14
Identities = 46/131 (35%), Positives = 72/131 (54%), Gaps = 6/131 (4%)
Query: 14 KFRMPTAENLVPIRLDIEIDAKRYK--DAFTWNPSDPDHEVGVFARRTVKDLKLPPPFVT 71
+ R + LVPIRL+ + + ++K D F W+ ++ + F ++D K PP
Sbjct: 216 RLRPSETQQLVPIRLEFDQERDKFKLRDTFLWDLNEDVLPLENFVALLIEDYKFIPPHHA 275
Query: 72 Q-IAQSIESQLAEFRSYEGQDMYAGEKIIPIKLDLCVNHMLVKDQFLWDLNNF-ESDLEE 129
Q I SI Q+ +F + D GE +PIK+D+ +N+ + DQF WD+ NF ESD E+
Sbjct: 276 QTILASIREQIRDF--HRKPDKVMGELRVPIKIDVTINNTQLVDQFEWDILNFGESDPED 333
Query: 130 LARIFCKDMGI 140
ARI C +M +
Sbjct: 334 FARIMCDEMNL 344
Score = 42.0 bits (97), Expect = 0.003
Identities = 32/102 (31%), Positives = 46/102 (44%), Gaps = 20/102 (19%)
Query: 8 FYRNPVKFRMPTAENLVPIRLDIEIDAKRYKDAFTWN-----PSDPDHEVGVFARRTVKD 62
F+R P K E VPI++D+ I+ + D F W+ SDP+ FAR +
Sbjct: 289 FHRKPDKVM---GELRVPIKIDVTINNTQLVDQFEWDILNFGESDPED----FARIMCDE 341
Query: 63 LKLPPPFVTQIAQSIESQLAEFR--------SYEGQDMYAGE 96
+ LP F T IA +I Q F S++G +Y E
Sbjct: 342 MNLPGEFTTAIAHTIREQTQLFHKSLFLVGYSFDGSPVYEDE 383
>gb|AAH83229.1| SWI/SNF-related matrix associated protein [Danio rerio]
gi|54262109|ref|NP_571523.1| SWI/SNF-related matrix
associated protein [Danio rerio]
Length = 370
Score = 77.4 bits (189), Expect = 7e-14
Identities = 45/122 (36%), Positives = 71/122 (57%), Gaps = 2/122 (1%)
Query: 20 AENLVPIRLDIEIDAKRYKDAFTWNPSDPDHEVGVFARRTVKDLKLPP-PFVTQIAQSIE 78
AE LVPIRLD+EID ++ +DAFTWN ++ +FA DL L P FV IA +I
Sbjct: 164 AEVLVPIRLDMEIDGQKLRDAFTWNMNEKLMTPEMFAEILCDDLDLNPLTFVPAIASAIR 223
Query: 79 SQLAEFRSYEGQDMYAGEKIIPIKLDLCVNHMLVKDQFLWDLNNFESDLEELARIFCKDM 138
Q+ + + + +++I IKL++ V ++ + DQF WD++ E+ E A C ++
Sbjct: 224 QQIESYPTDSILEEQTDQRVI-IKLNIHVGNISLVDQFEWDMSEKENSPESFALKLCSEL 282
Query: 139 GI 140
G+
Sbjct: 283 GL 284
Score = 35.8 bits (81), Expect = 0.22
Identities = 21/59 (35%), Positives = 31/59 (51%)
Query: 24 VPIRLDIEIDAKRYKDAFTWNPSDPDHEVGVFARRTVKDLKLPPPFVTQIAQSIESQLA 82
V I+L+I + D F W+ S+ ++ FA + +L L FVT IA SI QL+
Sbjct: 243 VIIKLNIHVGNISLVDQFEWDMSEKENSPESFALKLCSELGLGGEFVTTIAYSIRGQLS 301
>emb|CAB56700.1| SWI/SNF-related matrix associated protein [Danio rerio]
Length = 239
Score = 77.4 bits (189), Expect = 7e-14
Identities = 45/122 (36%), Positives = 71/122 (57%), Gaps = 2/122 (1%)
Query: 20 AENLVPIRLDIEIDAKRYKDAFTWNPSDPDHEVGVFARRTVKDLKLPP-PFVTQIAQSIE 78
AE LVPIRLD+EID ++ +DAFTWN ++ +FA DL L P FV IA +I
Sbjct: 33 AEVLVPIRLDMEIDGQKLRDAFTWNMNEKLMTPEMFAEILCDDLDLNPLTFVPAIASAIR 92
Query: 79 SQLAEFRSYEGQDMYAGEKIIPIKLDLCVNHMLVKDQFLWDLNNFESDLEELARIFCKDM 138
Q+ + + + +++I IKL++ V ++ + DQF WD++ E+ E A C ++
Sbjct: 93 QQIESYPTDSILEEQTDQRVI-IKLNIHVGNISLVDQFEWDMSEKENSPESFALKLCSEL 151
Query: 139 GI 140
G+
Sbjct: 152 GL 153
Score = 35.8 bits (81), Expect = 0.22
Identities = 21/59 (35%), Positives = 31/59 (51%)
Query: 24 VPIRLDIEIDAKRYKDAFTWNPSDPDHEVGVFARRTVKDLKLPPPFVTQIAQSIESQLA 82
V I+L+I + D F W+ S+ ++ FA + +L L FVT IA SI QL+
Sbjct: 112 VIIKLNIHVGNISLVDQFEWDMSEKENSPESFALKLCSELGLGGEFVTTIAYSIRGQLS 170
>gb|AAH76714.1| SWI/SNF related, matrix associated, actin dependent regulator of
chromatin, subfamily b, member 1 [Xenopus tropicalis]
gi|55742436|ref|NP_001006819.1| SWI/SNF related, matrix
associated, actin dependent regulator of chromatin,
subfamily b, member 1 [Xenopus tropicalis]
Length = 378
Score = 76.6 bits (187), Expect = 1e-13
Identities = 44/122 (36%), Positives = 73/122 (59%), Gaps = 2/122 (1%)
Query: 20 AENLVPIRLDIEIDAKRYKDAFTWNPSDPDHEVGVFARRTVKDLKLPP-PFVTQIAQSIE 78
+E LVPIRLD+EID ++ +DAFTWN ++ +FA DL L P FV IA +I
Sbjct: 176 SEVLVPIRLDMEIDGQKLRDAFTWNMNEKLMTPEMFAEILCDDLDLNPLAFVPAIASAIR 235
Query: 79 SQLAEFRSYEGQDMYAGEKIIPIKLDLCVNHMLVKDQFLWDLNNFESDLEELARIFCKDM 138
Q+ + + + + +++I IKL++ V ++ + DQF WD++ E+ E+ A C ++
Sbjct: 236 QQIESYPTDSILEDQSDQRVI-IKLNIHVGNISLVDQFEWDMSEKENSPEKFALKLCSEL 294
Query: 139 GI 140
G+
Sbjct: 295 GL 296
Score = 36.2 bits (82), Expect = 0.17
Identities = 21/63 (33%), Positives = 33/63 (52%)
Query: 20 AENLVPIRLDIEIDAKRYKDAFTWNPSDPDHEVGVFARRTVKDLKLPPPFVTQIAQSIES 79
++ V I+L+I + D F W+ S+ ++ FA + +L L FVT IA SI
Sbjct: 251 SDQRVIIKLNIHVGNISLVDQFEWDMSEKENSPEKFALKLCSELGLGGEFVTTIAYSIRG 310
Query: 80 QLA 82
QL+
Sbjct: 311 QLS 313
>gb|AAH72865.1| MGC80271 protein [Xenopus laevis]
Length = 378
Score = 76.3 bits (186), Expect = 1e-13
Identities = 44/121 (36%), Positives = 72/121 (59%), Gaps = 2/121 (1%)
Query: 21 ENLVPIRLDIEIDAKRYKDAFTWNPSDPDHEVGVFARRTVKDLKLPP-PFVTQIAQSIES 79
E LVPIRLD+EID ++ +DAFTWN ++ +FA DL L P FV IA +I
Sbjct: 177 EVLVPIRLDMEIDGQKLRDAFTWNMNEKLMTPEMFAEILCDDLDLNPLAFVPAIASAIRQ 236
Query: 80 QLAEFRSYEGQDMYAGEKIIPIKLDLCVNHMLVKDQFLWDLNNFESDLEELARIFCKDMG 139
Q+ + + + + +++I IKL++ V ++ + DQF WD++ E+ E+ A C ++G
Sbjct: 237 QIESYPTDSILEDQSDQRVI-IKLNIHVGNISLVDQFEWDMSEKENSPEKFALKLCSELG 295
Query: 140 I 140
+
Sbjct: 296 L 296
Score = 36.2 bits (82), Expect = 0.17
Identities = 21/63 (33%), Positives = 33/63 (52%)
Query: 20 AENLVPIRLDIEIDAKRYKDAFTWNPSDPDHEVGVFARRTVKDLKLPPPFVTQIAQSIES 79
++ V I+L+I + D F W+ S+ ++ FA + +L L FVT IA SI
Sbjct: 251 SDQRVIIKLNIHVGNISLVDQFEWDMSEKENSPEKFALKLCSELGLGGEFVTTIAYSIRG 310
Query: 80 QLA 82
QL+
Sbjct: 311 QLS 313
>dbj|BAB12428.1| Integrase interactor [Mus musculus]
Length = 376
Score = 76.3 bits (186), Expect = 1e-13
Identities = 43/121 (35%), Positives = 73/121 (59%), Gaps = 2/121 (1%)
Query: 21 ENLVPIRLDIEIDAKRYKDAFTWNPSDPDHEVGVFARRTVKDLKLPP-PFVTQIAQSIES 79
E LVPIRLD+EID ++ +DAFTWN ++ + +F+ DL L P FV IA +I
Sbjct: 175 EVLVPIRLDMEIDGQKLRDAFTWNMNEKLMTLEMFSEILCDDLDLNPLTFVPAIASAIRQ 234
Query: 80 QLAEFRSYEGQDMYAGEKIIPIKLDLCVNHMLVKDQFLWDLNNFESDLEELARIFCKDMG 139
Q+ + + + + +++I IKL++ V ++ + DQF WD++ E+ E+ A C ++G
Sbjct: 235 QIESYPTDSILEDQSDQRVI-IKLNIHVGNISLVDQFEWDMSEKENSPEKFALKLCSELG 293
Query: 140 I 140
+
Sbjct: 294 L 294
Score = 36.2 bits (82), Expect = 0.17
Identities = 21/63 (33%), Positives = 33/63 (52%)
Query: 20 AENLVPIRLDIEIDAKRYKDAFTWNPSDPDHEVGVFARRTVKDLKLPPPFVTQIAQSIES 79
++ V I+L+I + D F W+ S+ ++ FA + +L L FVT IA SI
Sbjct: 249 SDQRVIIKLNIHVGNISLVDQFEWDMSEKENSPEKFALKLCSELGLGGEFVTTIAYSIRG 308
Query: 80 QLA 82
QL+
Sbjct: 309 QLS 311
>dbj|BAB12427.1| Integrase interactor 1 [Mus musculus]
Length = 385
Score = 76.3 bits (186), Expect = 1e-13
Identities = 43/121 (35%), Positives = 73/121 (59%), Gaps = 2/121 (1%)
Query: 21 ENLVPIRLDIEIDAKRYKDAFTWNPSDPDHEVGVFARRTVKDLKLPP-PFVTQIAQSIES 79
E LVPIRLD+EID ++ +DAFTWN ++ + +F+ DL L P FV IA +I
Sbjct: 184 EVLVPIRLDMEIDGQKLRDAFTWNMNEKLMTLEMFSEILCDDLDLNPLTFVPAIASAIRQ 243
Query: 80 QLAEFRSYEGQDMYAGEKIIPIKLDLCVNHMLVKDQFLWDLNNFESDLEELARIFCKDMG 139
Q+ + + + + +++I IKL++ V ++ + DQF WD++ E+ E+ A C ++G
Sbjct: 244 QIESYPTDSILEDQSDQRVI-IKLNIHVGNISLVDQFEWDMSEKENSPEKFALKLCSELG 302
Query: 140 I 140
+
Sbjct: 303 L 303
Score = 36.2 bits (82), Expect = 0.17
Identities = 21/63 (33%), Positives = 33/63 (52%)
Query: 20 AENLVPIRLDIEIDAKRYKDAFTWNPSDPDHEVGVFARRTVKDLKLPPPFVTQIAQSIES 79
++ V I+L+I + D F W+ S+ ++ FA + +L L FVT IA SI
Sbjct: 258 SDQRVIIKLNIHVGNISLVDQFEWDMSEKENSPEKFALKLCSELGLGGEFVTTIAYSIRG 317
Query: 80 QLA 82
QL+
Sbjct: 318 QLS 320
>emb|CAA09759.1| Ini1b [Homo sapiens] gi|31338810|dbj|BAC77068.1| Ini1 [Homo
sapiens] gi|55956801|ref|NP_001007469.1| SWI/SNF
related, matrix associated, actin dependent regulator of
chromatin, subfamily b, member 1 isoform b [Homo
sapiens]
Length = 376
Score = 75.1 bits (183), Expect = 3e-13
Identities = 43/121 (35%), Positives = 72/121 (58%), Gaps = 2/121 (1%)
Query: 21 ENLVPIRLDIEIDAKRYKDAFTWNPSDPDHEVGVFARRTVKDLKLPP-PFVTQIAQSIES 79
E LVPIRLD+EID ++ +DAFTWN ++ +F+ DL L P FV IA +I
Sbjct: 175 EVLVPIRLDMEIDGQKLRDAFTWNMNEKLMTPEMFSEILCDDLDLNPLTFVPAIASAIRQ 234
Query: 80 QLAEFRSYEGQDMYAGEKIIPIKLDLCVNHMLVKDQFLWDLNNFESDLEELARIFCKDMG 139
Q+ + + + + +++I IKL++ V ++ + DQF WD++ E+ E+ A C ++G
Sbjct: 235 QIESYPTDSILEDQSDQRVI-IKLNIHVGNISLVDQFEWDMSEKENSPEKFALKLCSELG 293
Query: 140 I 140
+
Sbjct: 294 L 294
Score = 36.2 bits (82), Expect = 0.17
Identities = 21/63 (33%), Positives = 33/63 (52%)
Query: 20 AENLVPIRLDIEIDAKRYKDAFTWNPSDPDHEVGVFARRTVKDLKLPPPFVTQIAQSIES 79
++ V I+L+I + D F W+ S+ ++ FA + +L L FVT IA SI
Sbjct: 249 SDQRVIIKLNIHVGNISLVDQFEWDMSEKENSPEKFALKLCSELGLGGEFVTTIAYSIRG 308
Query: 80 QLA 82
QL+
Sbjct: 309 QLS 311
>ref|NP_035548.1| SWI/SNF related, matrix associated, actin dependent regulator of
chromatin, subfamily b, member 1 [Mus musculus]
gi|47678693|emb|CAG30467.1| SMARCB1 [Homo sapiens]
gi|994851|gb|AAB34227.1| transcriptional
activator=nuclear protein SNF5 homolog [human, WI38
fibroblasts, Peptide, 385 aa] gi|4128023|emb|CAA09758.1|
integrase interactor 1a protein (INI1A) [Homo sapiens]
gi|19264048|gb|AAH25163.1| SWI/SNF related, matrix
associated, actin dependent regulator of chromatin,
subfamily b, member 1 [Mus musculus]
gi|51338799|sp|Q12824|SNF5_HUMAN SWI/SNF related, matrix
associated, actin dependent regulator of chromatin
subfamily B member 1 (Integrase interactor 1 protein)
(hSNF5) (BAF47) gi|8928360|sp|Q9Z0H3|SNF5_MOUSE SWI/SNF
related, matrix associated, actin dependent regulator of
chromatin subfamily B member 1 (Integrase interactor 1
protein) (mSNF5) gi|27545326|ref|NP_003064.2| SWI/SNF
related, matrix associated, actin dependent regulator of
chromatin, subfamily b, member 1 isoform a [Homo
sapiens] gi|4138223|emb|CAA09761.1| integrase interactor
1a protein (INI1A) [Mus musculus]
gi|4138221|emb|CAA09760.1| integrase interactor 1a
protein (INI1A) [Mus musculus]
gi|26344792|dbj|BAC36045.1| unnamed protein product [Mus
musculus]
Length = 385
Score = 75.1 bits (183), Expect = 3e-13
Identities = 43/121 (35%), Positives = 72/121 (58%), Gaps = 2/121 (1%)
Query: 21 ENLVPIRLDIEIDAKRYKDAFTWNPSDPDHEVGVFARRTVKDLKLPP-PFVTQIAQSIES 79
E LVPIRLD+EID ++ +DAFTWN ++ +F+ DL L P FV IA +I
Sbjct: 184 EVLVPIRLDMEIDGQKLRDAFTWNMNEKLMTPEMFSEILCDDLDLNPLTFVPAIASAIRQ 243
Query: 80 QLAEFRSYEGQDMYAGEKIIPIKLDLCVNHMLVKDQFLWDLNNFESDLEELARIFCKDMG 139
Q+ + + + + +++I IKL++ V ++ + DQF WD++ E+ E+ A C ++G
Sbjct: 244 QIESYPTDSILEDQSDQRVI-IKLNIHVGNISLVDQFEWDMSEKENSPEKFALKLCSELG 302
Query: 140 I 140
+
Sbjct: 303 L 303
Score = 36.2 bits (82), Expect = 0.17
Identities = 21/63 (33%), Positives = 33/63 (52%)
Query: 20 AENLVPIRLDIEIDAKRYKDAFTWNPSDPDHEVGVFARRTVKDLKLPPPFVTQIAQSIES 79
++ V I+L+I + D F W+ S+ ++ FA + +L L FVT IA SI
Sbjct: 258 SDQRVIIKLNIHVGNISLVDQFEWDMSEKENSPEKFALKLCSELGLGGEFVTTIAYSIRG 317
Query: 80 QLA 82
QL+
Sbjct: 318 QLS 320
>gb|AAA81905.1| Ini1
Length = 385
Score = 75.1 bits (183), Expect = 3e-13
Identities = 43/121 (35%), Positives = 72/121 (58%), Gaps = 2/121 (1%)
Query: 21 ENLVPIRLDIEIDAKRYKDAFTWNPSDPDHEVGVFARRTVKDLKLPP-PFVTQIAQSIES 79
E LVPIRLD+EID ++ +DAFTWN ++ +F+ DL L P FV IA +I
Sbjct: 184 EVLVPIRLDMEIDGQKLRDAFTWNMNEKLMTPEMFSEILCDDLDLNPLTFVPAIASAIRQ 243
Query: 80 QLAEFRSYEGQDMYAGEKIIPIKLDLCVNHMLVKDQFLWDLNNFESDLEELARIFCKDMG 139
Q+ + + + + +++I IKL++ V ++ + DQF WD++ E+ E+ A C ++G
Sbjct: 244 QIESYPTDSILEDQSDQRVI-IKLNIHVGNISLVDQFEWDMSEKENSPEKFALKLCSELG 302
Query: 140 I 140
+
Sbjct: 303 L 303
Score = 36.2 bits (82), Expect = 0.17
Identities = 21/63 (33%), Positives = 33/63 (52%)
Query: 20 AENLVPIRLDIEIDAKRYKDAFTWNPSDPDHEVGVFARRTVKDLKLPPPFVTQIAQSIES 79
++ V I+L+I + D F W+ S+ ++ FA + +L L FVT IA SI
Sbjct: 258 SDQRVIIKLNIHVGNISLVDQFEWDMSEKENSPEKFALKLCSELGLGGEFVTTIAYSIRG 317
Query: 80 QLA 82
QL+
Sbjct: 318 QLS 320
>ref|XP_342120.2| PREDICTED: similar to SWI/SNF related, matrix associated, actin
dependent regulator of chromatin, subfamily b, member 1
[Rattus norvegicus]
Length = 468
Score = 75.1 bits (183), Expect = 3e-13
Identities = 43/121 (35%), Positives = 72/121 (58%), Gaps = 2/121 (1%)
Query: 21 ENLVPIRLDIEIDAKRYKDAFTWNPSDPDHEVGVFARRTVKDLKLPP-PFVTQIAQSIES 79
E LVPIRLD+EID ++ +DAFTWN ++ +F+ DL L P FV IA +I
Sbjct: 268 EVLVPIRLDMEIDGQKLRDAFTWNMNEKLMTPEMFSEILCDDLDLNPLTFVPAIASAIRQ 327
Query: 80 QLAEFRSYEGQDMYAGEKIIPIKLDLCVNHMLVKDQFLWDLNNFESDLEELARIFCKDMG 139
Q+ + + + + +++I IKL++ V ++ + DQF WD++ E+ E+ A C ++G
Sbjct: 328 QIESYPTDSILEDQSDQRVI-IKLNIHVGNISLVDQFEWDMSEKENSPEKFALKLCSELG 386
Query: 140 I 140
+
Sbjct: 387 L 387
Score = 36.2 bits (82), Expect = 0.17
Identities = 21/63 (33%), Positives = 33/63 (52%)
Query: 20 AENLVPIRLDIEIDAKRYKDAFTWNPSDPDHEVGVFARRTVKDLKLPPPFVTQIAQSIES 79
++ V I+L+I + D F W+ S+ ++ FA + +L L FVT IA SI
Sbjct: 342 SDQRVIIKLNIHVGNISLVDQFEWDMSEKENSPEKFALKLCSELGLGGEFVTTIAYSIRG 401
Query: 80 QLA 82
QL+
Sbjct: 402 QLS 404
>ref|XP_543533.1| PREDICTED: similar to SWI/SNF related, matrix associated, actin
dependent regulator of chromatin, subfamily b, member 1
[Canis familiaris]
Length = 552
Score = 75.1 bits (183), Expect = 3e-13
Identities = 43/121 (35%), Positives = 72/121 (58%), Gaps = 2/121 (1%)
Query: 21 ENLVPIRLDIEIDAKRYKDAFTWNPSDPDHEVGVFARRTVKDLKLPP-PFVTQIAQSIES 79
E LVPIRLD+EID ++ +DAFTWN ++ +F+ DL L P FV IA +I
Sbjct: 343 EVLVPIRLDMEIDGQKLRDAFTWNMNEKLMTPEMFSEILCDDLDLNPLTFVPAIASAIRQ 402
Query: 80 QLAEFRSYEGQDMYAGEKIIPIKLDLCVNHMLVKDQFLWDLNNFESDLEELARIFCKDMG 139
Q+ + + + + +++I IKL++ V ++ + DQF WD++ E+ E+ A C ++G
Sbjct: 403 QIESYPTDSILEDQSDQRVI-IKLNIHVGNISLVDQFEWDMSEKENSPEKFALKLCSELG 461
Query: 140 I 140
+
Sbjct: 462 L 462
Score = 36.2 bits (82), Expect = 0.17
Identities = 21/63 (33%), Positives = 33/63 (52%)
Query: 20 AENLVPIRLDIEIDAKRYKDAFTWNPSDPDHEVGVFARRTVKDLKLPPPFVTQIAQSIES 79
++ V I+L+I + D F W+ S+ ++ FA + +L L FVT IA SI
Sbjct: 417 SDQRVIIKLNIHVGNISLVDQFEWDMSEKENSPEKFALKLCSELGLGGEFVTTIAYSIRG 476
Query: 80 QLA 82
QL+
Sbjct: 477 QLS 479
>ref|XP_515023.1| PREDICTED: similar to SWI/SNF related, matrix associated, actin
dependent regulator of chromatin, subfamily b, member 1;
integrase interactor 1 [Pan troglodytes]
Length = 483
Score = 75.1 bits (183), Expect = 3e-13
Identities = 43/121 (35%), Positives = 72/121 (58%), Gaps = 2/121 (1%)
Query: 21 ENLVPIRLDIEIDAKRYKDAFTWNPSDPDHEVGVFARRTVKDLKLPP-PFVTQIAQSIES 79
E LVPIRLD+EID ++ +DAFTWN ++ +F+ DL L P FV IA +I
Sbjct: 282 EVLVPIRLDMEIDGQKLRDAFTWNMNEKLMTPEMFSEILCDDLDLNPLTFVPAIASAIRQ 341
Query: 80 QLAEFRSYEGQDMYAGEKIIPIKLDLCVNHMLVKDQFLWDLNNFESDLEELARIFCKDMG 139
Q+ + + + + +++I IKL++ V ++ + DQF WD++ E+ E+ A C ++G
Sbjct: 342 QIESYPTDSILEDQSDQRVI-IKLNIHVGNISLVDQFEWDMSEKENSPEKFALKLCSELG 400
Query: 140 I 140
+
Sbjct: 401 L 401
Score = 36.2 bits (82), Expect = 0.17
Identities = 21/63 (33%), Positives = 33/63 (52%)
Query: 20 AENLVPIRLDIEIDAKRYKDAFTWNPSDPDHEVGVFARRTVKDLKLPPPFVTQIAQSIES 79
++ V I+L+I + D F W+ S+ ++ FA + +L L FVT IA SI
Sbjct: 356 SDQRVIIKLNIHVGNISLVDQFEWDMSEKENSPEKFALKLCSELGLGGEFVTTIAYSIRG 415
Query: 80 QLA 82
QL+
Sbjct: 416 QLS 418
>emb|CAG31903.1| hypothetical protein [Gallus gallus]
Length = 386
Score = 75.1 bits (183), Expect = 3e-13
Identities = 43/121 (35%), Positives = 72/121 (58%), Gaps = 2/121 (1%)
Query: 21 ENLVPIRLDIEIDAKRYKDAFTWNPSDPDHEVGVFARRTVKDLKLPP-PFVTQIAQSIES 79
E LVPIRLD+EID ++ +DAFTWN ++ +F+ DL L P FV IA +I
Sbjct: 185 EVLVPIRLDMEIDGQKLRDAFTWNMNEKLMTPEMFSEILCDDLDLNPLTFVPAIASAIRQ 244
Query: 80 QLAEFRSYEGQDMYAGEKIIPIKLDLCVNHMLVKDQFLWDLNNFESDLEELARIFCKDMG 139
Q+ + + + + +++I IKL++ V ++ + DQF WD++ E+ E+ A C ++G
Sbjct: 245 QIESYPTDSILEDQSDQRVI-IKLNIHVGNISLVDQFEWDMSEKENSPEKFALKLCSELG 303
Query: 140 I 140
+
Sbjct: 304 L 304
Score = 36.2 bits (82), Expect = 0.17
Identities = 21/63 (33%), Positives = 33/63 (52%)
Query: 20 AENLVPIRLDIEIDAKRYKDAFTWNPSDPDHEVGVFARRTVKDLKLPPPFVTQIAQSIES 79
++ V I+L+I + D F W+ S+ ++ FA + +L L FVT IA SI
Sbjct: 259 SDQRVIIKLNIHVGNISLVDQFEWDMSEKENSPEKFALKLCSELGLGGEFVTTIAYSIRG 318
Query: 80 QLA 82
QL+
Sbjct: 319 QLS 321
>dbj|BAB14784.1| unnamed protein product [Homo sapiens]
Length = 394
Score = 75.1 bits (183), Expect = 3e-13
Identities = 43/121 (35%), Positives = 72/121 (58%), Gaps = 2/121 (1%)
Query: 21 ENLVPIRLDIEIDAKRYKDAFTWNPSDPDHEVGVFARRTVKDLKLPP-PFVTQIAQSIES 79
E LVPIRLD+EID ++ +DAFTWN ++ +F+ DL L P FV IA +I
Sbjct: 193 EVLVPIRLDMEIDGQKLRDAFTWNMNEKLMTPEMFSEILCDDLDLNPLTFVPAIASAIRQ 252
Query: 80 QLAEFRSYEGQDMYAGEKIIPIKLDLCVNHMLVKDQFLWDLNNFESDLEELARIFCKDMG 139
Q+ + + + + +++I IKL++ V ++ + DQF WD++ E+ E+ A C ++G
Sbjct: 253 QIESYPTDSILEDQSDQRVI-IKLNIHVGNISLVDQFEWDMSEKENSPEKFALKLCSELG 311
Query: 140 I 140
+
Sbjct: 312 L 312
Score = 36.2 bits (82), Expect = 0.17
Identities = 21/63 (33%), Positives = 33/63 (52%)
Query: 20 AENLVPIRLDIEIDAKRYKDAFTWNPSDPDHEVGVFARRTVKDLKLPPPFVTQIAQSIES 79
++ V I+L+I + D F W+ S+ ++ FA + +L L FVT IA SI
Sbjct: 267 SDQRVIIKLNIHVGNISLVDQFEWDMSEKENSPEKFALKLCSELGLGGEFVTTIAYSIRG 326
Query: 80 QLA 82
QL+
Sbjct: 327 QLS 329
>ref|XP_415225.1| PREDICTED: similar to SWI/SNF related, matrix associated, actin
dependent regulator of chromatin, subfamily b, member 1;
integrase interactor 1 [Gallus gallus]
Length = 919
Score = 75.1 bits (183), Expect = 3e-13
Identities = 43/121 (35%), Positives = 72/121 (58%), Gaps = 2/121 (1%)
Query: 21 ENLVPIRLDIEIDAKRYKDAFTWNPSDPDHEVGVFARRTVKDLKLPP-PFVTQIAQSIES 79
E LVPIRLD+EID ++ +DAFTWN ++ +F+ DL L P FV IA +I
Sbjct: 718 EVLVPIRLDMEIDGQKLRDAFTWNMNEKLMTPEMFSEILCDDLDLNPLTFVPAIASAIRQ 777
Query: 80 QLAEFRSYEGQDMYAGEKIIPIKLDLCVNHMLVKDQFLWDLNNFESDLEELARIFCKDMG 139
Q+ + + + + +++I IKL++ V ++ + DQF WD++ E+ E+ A C ++G
Sbjct: 778 QIESYPTDSILEDQSDQRVI-IKLNIHVGNISLVDQFEWDMSEKENSPEKFALKLCSELG 836
Query: 140 I 140
+
Sbjct: 837 L 837
Score = 36.2 bits (82), Expect = 0.17
Identities = 21/63 (33%), Positives = 33/63 (52%)
Query: 20 AENLVPIRLDIEIDAKRYKDAFTWNPSDPDHEVGVFARRTVKDLKLPPPFVTQIAQSIES 79
++ V I+L+I + D F W+ S+ ++ FA + +L L FVT IA SI
Sbjct: 792 SDQRVIIKLNIHVGNISLVDQFEWDMSEKENSPEKFALKLCSELGLGGEFVTTIAYSIRG 851
Query: 80 QLA 82
QL+
Sbjct: 852 QLS 854
Database: nr
Posted date: Jul 5, 2005 12:34 AM
Number of letters in database: 863,360,394
Number of sequences in database: 2,540,612
Lambda K H
0.321 0.139 0.420
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 258,935,106
Number of Sequences: 2540612
Number of extensions: 10001757
Number of successful extensions: 19160
Number of sequences better than 10.0: 73
Number of HSP's better than 10.0 without gapping: 65
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 18906
Number of HSP's gapped (non-prelim): 164
length of query: 145
length of database: 863,360,394
effective HSP length: 121
effective length of query: 24
effective length of database: 555,946,342
effective search space: 13342712208
effective search space used: 13342712208
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 67 (30.4 bits)
Lotus: description of TM0262.10