BLAST2 result
BLASTP 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TM0253.6
(499 letters)
Database: nr
2,540,612 sequences; 863,360,394 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_564842.1| ribosomal protein S5 family protein [Arabidopsi... 612 e-174
gb|AAK59625.1| unknown protein [Arabidopsis thaliana] 607 e-172
ref|XP_463788.1| putative ribosomal protein S5 [Oryza sativa (ja... 562 e-159
gb|AAD38262.1| Hypothetical Protein [Arabidopsis thaliana] gi|25... 529 e-149
ref|ZP_00314569.1| COG0098: Ribosomal protein S5 [Microbulbifer ... 119 3e-25
ref|YP_156280.1| Ribosomal protein S5 [Idiomarina loihiensis L2T... 113 2e-23
gb|AAU38638.1| RpsE protein [Mannheimia succiniciproducens MBEL5... 113 2e-23
ref|ZP_00204534.1| COG0098: Ribosomal protein S5 [Actinobacillus... 113 2e-23
ref|NP_636298.1| 30S ribosomal protein S5 [Xanthomonas campestri... 112 2e-23
gb|AAN66101.1| ribosomal protein S5 [Pseudomonas putida KT2440] ... 112 2e-23
ref|NP_790490.1| ribosomal protein S5 [Pseudomonas syringae pv. ... 112 3e-23
ref|NP_796653.1| ribosomal protein S5 [Vibrio parahaemolyticus R... 112 3e-23
gb|AAS73101.1| predicted ribosomal protein S5 [uncultured marine... 112 3e-23
ref|ZP_00262639.1| COG0098: Ribosomal protein S5 [Pseudomonas fl... 112 3e-23
gb|AAP96679.1| 30S ribosomal protein S5 [Haemophilus ducreyi 350... 112 4e-23
gb|AAK03482.1| RpS5 [Pasteurella multocida subsp. multocida str.... 112 4e-23
ref|ZP_00147210.1| COG0098: Ribosomal protein S5 [Psychrobacter ... 111 5e-23
ref|NP_819299.1| ribosomal protein S5 [Coxiella burnetii RSA 493... 111 6e-23
gb|AAR05296.1| ribosomal protein S5 [uncultured marine gamma pro... 110 8e-23
ref|YP_094390.1| 30S ribosomal protein S5 [Legionella pneumophil... 110 8e-23
>ref|NP_564842.1| ribosomal protein S5 family protein [Arabidopsis thaliana]
gi|48958531|gb|AAT47818.1| At1g64880 [Arabidopsis
thaliana]
Length = 515
Score = 612 bits (1579), Expect = e-174
Identities = 301/459 (65%), Positives = 378/459 (81%), Gaps = 12/459 (2%)
Query: 45 YSGKSLYSTSSDARIVQDLLAQVEKDRLREKNERMRAGLDTADIDAEGEEDYMGVGPLIE 104
+ S S S R+V++L+A+VEK++ RE+ ER R GLD DIDAE EEDY+G+ P IE
Sbjct: 65 FFSSSTMSPSEADRVVRELIAEVEKEKQREREERQRQGLDYKDIDAEDEEDYLGIEPFIE 124
Query: 105 KLEKEKLKECPELMRYEEPTDSDSDEDEYEASQ--KKFDDFERKFKRHQDLLKNFTDADT 162
KL+K+ LK+ EL R EE +DSDS+ DE + + KK D F +KF+RH++LL+ T ++T
Sbjct: 125 KLKKQNLKDDGELNRREESSDSDSEYDEIDLDEERKKEDIFNKKFQRHKELLQTLTKSET 184
Query: 163 LDDAFKWMNRIDKFEDKHFRLRPEYRVIGELMNRLKVVTDQKDKFILQNKLNRALRLVQW 222
LD+AF+WMN++DKFE+KHF+LRPEYRVIGELMNRLKV + K+KF+LQ KLNRA+RLV+W
Sbjct: 185 LDEAFRWMNKLDKFEEKHFKLRPEYRVIGELMNRLKVA-EGKEKFVLQQKLNRAMRLVEW 243
Query: 223 KEAFDPDNPDNYGVIQHEQLGPTSDALQNAGFEKEKQTIQG--QGDAADDDDEQEFDDMK 280
KEAFDP+NP NYGVI+ D +Q G E+E++ + + D DDDDE+EFDDMK
Sbjct: 244 KEAFDPNNPANYGVIER-------DNVQGGGEEREERLVADGPKDDNDDDDDEEEFDDMK 296
Query: 281 EKDNIILAKLDAIDKKLEEKLAELEYTFGKKGKVLEEEIRDLAEERNELTEKKRRPLYRK 340
E+D+I+L KL+AIDKKLE KL+EL++TFGKKGK LEEEIR+LAE+RN LTEKKR+PLYRK
Sbjct: 297 ERDDILLEKLNAIDKKLEIKLSELDHTFGKKGKRLEEEIRELAEDRNALTEKKRQPLYRK 356
Query: 341 GFDVKLINVNRTCKVTKGGQVVKYTAMLACGNYNGVVGFAKAKGPAVPVALQKAYEKCFQ 400
G+DV +I+V + CKVTKGG+V +YTA++ CGNY G++G+AKAK A+QKAYEKCFQ
Sbjct: 357 GYDVHVIDVKKVCKVTKGGRVERYTALMVCGNYEGIIGYAKAKAETGQSAMQKAYEKCFQ 416
Query: 401 NLHFVERHEEHTIAHAIQTSFKKTKVYLWPAPTATGMKAGRIVQTILHLAGFKNVKSKVV 460
NLH+VERHEEHTIAHAIQTS+KKTK+YLWPAPT TGMKAGR+V+TIL LAGFKN+KSKV+
Sbjct: 417 NLHYVERHEEHTIAHAIQTSYKKTKLYLWPAPTTTGMKAGRVVKTILLLAGFKNIKSKVI 476
Query: 461 GSRNPHNTVKAVFKALNAIETPRDVQEKFGRTVVEKYLL 499
GSRN +NTVKAV KALNA+ETP+DVQEKFGRTVVEKYLL
Sbjct: 477 GSRNSYNTVKAVLKALNAVETPKDVQEKFGRTVVEKYLL 515
>gb|AAK59625.1| unknown protein [Arabidopsis thaliana]
Length = 514
Score = 607 bits (1565), Expect = e-172
Identities = 301/459 (65%), Positives = 377/459 (81%), Gaps = 13/459 (2%)
Query: 45 YSGKSLYSTSSDARIVQDLLAQVEKDRLREKNERMRAGLDTADIDAEGEEDYMGVGPLIE 104
+ S S S R+V++L+A+VEK + RE+ ER R GLD DIDAE EEDY+G+ P IE
Sbjct: 65 FFSSSTMSPSEADRVVRELIAEVEKKQ-REREERQRQGLDYKDIDAEDEEDYLGIEPFIE 123
Query: 105 KLEKEKLKECPELMRYEEPTDSDSDEDEYEASQ--KKFDDFERKFKRHQDLLKNFTDADT 162
KL+K+ LK+ EL R EE +DSDS+ DE + + KK D F +KF+RH++LL+ T ++T
Sbjct: 124 KLKKQNLKDDGELNRREESSDSDSEYDEIDLDEERKKEDIFNKKFQRHKELLQTLTKSET 183
Query: 163 LDDAFKWMNRIDKFEDKHFRLRPEYRVIGELMNRLKVVTDQKDKFILQNKLNRALRLVQW 222
LD+AF+WMN++DKFE+KHF+LRPEYRVIGELMNRLKV + K+KF+LQ KLNRA+RLV+W
Sbjct: 184 LDEAFRWMNKLDKFEEKHFKLRPEYRVIGELMNRLKVA-EGKEKFVLQQKLNRAMRLVEW 242
Query: 223 KEAFDPDNPDNYGVIQHEQLGPTSDALQNAGFEKEKQTIQG--QGDAADDDDEQEFDDMK 280
KEAFDP+NP NYGVI+ D +Q G E+E++ + + D DDDDE+EFDDMK
Sbjct: 243 KEAFDPNNPANYGVIER-------DNVQGGGEEREERLVADGPKDDNDDDDDEEEFDDMK 295
Query: 281 EKDNIILAKLDAIDKKLEEKLAELEYTFGKKGKVLEEEIRDLAEERNELTEKKRRPLYRK 340
E+D+I+L KL+AIDKKLE KL+EL++TFGKKGK LEEEIR+LAE+RN LTEKKR+PLYRK
Sbjct: 296 ERDDILLEKLNAIDKKLEIKLSELDHTFGKKGKRLEEEIRELAEDRNALTEKKRQPLYRK 355
Query: 341 GFDVKLINVNRTCKVTKGGQVVKYTAMLACGNYNGVVGFAKAKGPAVPVALQKAYEKCFQ 400
G+DV +I+V + CKVTKGG+V +YTA++ CGNY G++G+AKAK A+QKAYEKCFQ
Sbjct: 356 GYDVHVIDVKKVCKVTKGGRVERYTALMVCGNYEGIIGYAKAKAETGQSAMQKAYEKCFQ 415
Query: 401 NLHFVERHEEHTIAHAIQTSFKKTKVYLWPAPTATGMKAGRIVQTILHLAGFKNVKSKVV 460
NLH+VERHEEHTIAHAIQTS+KKTK+YLWPAPT TGMKAGR+V+TIL LAGFKN+KSKV+
Sbjct: 416 NLHYVERHEEHTIAHAIQTSYKKTKLYLWPAPTTTGMKAGRVVKTILLLAGFKNIKSKVI 475
Query: 461 GSRNPHNTVKAVFKALNAIETPRDVQEKFGRTVVEKYLL 499
GSRN +NTVKAV KALNA+ETP+DVQEKFGRTVVEKYLL
Sbjct: 476 GSRNSYNTVKAVLKALNAVETPKDVQEKFGRTVVEKYLL 514
>ref|XP_463788.1| putative ribosomal protein S5 [Oryza sativa (japonica
cultivar-group)] gi|41053236|dbj|BAD08197.1| putative
ribosomal protein S5 [Oryza sativa (japonica
cultivar-group)] gi|41052902|dbj|BAD07814.1| putative
ribosomal protein S5 [Oryza sativa (japonica
cultivar-group)]
Length = 501
Score = 562 bits (1449), Expect = e-159
Identities = 273/465 (58%), Positives = 370/465 (78%), Gaps = 20/465 (4%)
Query: 42 SSSYSGKSLYSTSSDARIVQDLLAQVEKDRLREKNERMRAGLDTADIDAEGEEDYMGVGP 101
+++ SG S R++ DL A+++++R R++ E D D +EDY+GV P
Sbjct: 50 ANASSGSSRLKQIQSERVIHDLFAELQRERQRDRQEE--------DEDEGEDEDYLGVKP 101
Query: 102 LIEKLEKEKLKE--CPELMRYEEPTDSDSDEDEY----EASQKKFDDFERKFKRHQDLLK 155
LIEKLE+ + KE P+ + EPTDSDSDE++ +A +++ D+FERK RH +LL+
Sbjct: 102 LIEKLERRRAKEEAAPD-DSFWEPTDSDSDEEDERYTPDAIKRRVDEFERKCNRHSELLR 160
Query: 156 NFTDADTLDDAFKWMNRIDKFEDKHFRLRPEYRVIGELMNRLKVVTDQKDKFILQNKLNR 215
+F +A+TLDDA KWM +ID+FE++H +L EYRVIG++MNRLK T KD+F+L KLNR
Sbjct: 161 SFAEAETLDDAHKWMTKIDRFEERHLKLPLEYRVIGDMMNRLKDATG-KDRFLLLQKLNR 219
Query: 216 ALRLVQWKEAFDPDNPDNYGVIQHEQLGPTSDALQNAGFEKEKQTIQGQGDAADDDDEQE 275
A+R+++ +EA+DP NP N+GVIQH+Q+G D + NAGF++EKQ IQG GD DDD++E
Sbjct: 220 AVRIMECREAYDPSNPSNFGVIQHQQVGSPEDLVLNAGFDREKQMIQGAGD---DDDDEE 276
Query: 276 FDDMKEKDNIILAKLDAIDKKLEEKLAELEYTFGKKGKVLEEEIRDLAEERNELTEKKRR 335
F++ KEKD++++ KL++I+KK+EEKLAEL++TFGKKG+VLEEEI+DL EERN LTE KRR
Sbjct: 277 FNEDKEKDDLLIEKLNSIEKKIEEKLAELDHTFGKKGRVLEEEIKDLVEERNSLTEHKRR 336
Query: 336 PLYRKGFDVKLINVNRTCKVTKGGQVVKYTAMLACGNYNGVVGFAKAKGPAVPVALQKAY 395
P+YRKGFDVK+I+VNRTCKVTKGGQ+ K+TA+LA GNY+GVVGFAKA+GP +A+Q+AY
Sbjct: 337 PMYRKGFDVKVIDVNRTCKVTKGGQIAKFTALLATGNYHGVVGFAKARGPTAKIAIQRAY 396
Query: 396 EKCFQNLHFVERHEEHTIAHAIQTSFKKTKVYLWPAPTATGMK-AGRIVQTILHLAGFKN 454
EKCFQ+LH++ER+E+HTIAHAIQ ++KTK+YLWP P +GM AGR V+T+L+LAGF N
Sbjct: 397 EKCFQDLHYMERYEDHTIAHAIQAKYEKTKIYLWPGPMRSGMSAAGRTVETVLYLAGFSN 456
Query: 455 VKSKVVGSRNPHNTVKAVFKALNAIETPRDVQEKFGRTVVEKYLL 499
VKSK++GSRNP N +KA+F ALNAIETP+DV++KFGRTVVE YLL
Sbjct: 457 VKSKIIGSRNPLNVIKALFIALNAIETPKDVEQKFGRTVVESYLL 501
>gb|AAD38262.1| Hypothetical Protein [Arabidopsis thaliana] gi|25404502|pir||B96672
hypothetical protein F13O11.18 [imported] - Arabidopsis
thaliana
Length = 495
Score = 529 bits (1363), Expect = e-149
Identities = 274/472 (58%), Positives = 347/472 (73%), Gaps = 58/472 (12%)
Query: 45 YSGKSLYSTSSDARIVQDLLAQVEKDRLREKNERMRAGLDTADIDAEGEEDYMGVGPLIE 104
+ S S S R+V++L+A+VEK++ RE+ ER R GLD DIDAE EEDY+G+ P IE
Sbjct: 65 FFSSSTMSPSEADRVVRELIAEVEKEKQREREERQRQGLDYKDIDAEDEEDYLGIEPFIE 124
Query: 105 KLEKEKLKECPELMRYEEPTDSDSDEDEYEASQ--KKFDDFERKFKRHQDLLKNFTDADT 162
KL+K+ LK+ EL R EE +DSDS+ DE + + KK D F +KF+RH++LL+ T ++T
Sbjct: 125 KLKKQNLKDDGELNRREESSDSDSEYDEIDLDEERKKEDIFNKKFQRHKELLQTLTKSET 184
Query: 163 LDDAFKWMNRIDKFEDKHFRLRPEYRVIGELMNRLKVVTDQKDKFILQNKLNRALRLVQW 222
LD+AF+WMN++DKFE+KHF+LRPEYRVIGELMNRLKV + K+KF+LQ KLNRA+RLV+W
Sbjct: 185 LDEAFRWMNKLDKFEEKHFKLRPEYRVIGELMNRLKVA-EGKEKFVLQQKLNRAMRLVEW 243
Query: 223 KEAFDPDNPDNYGVIQHEQLGPTSDALQNAGFEKEKQTIQG--QGDAADDDDEQEFDDMK 280
KEAFDP+NP NYGVI+ D +Q G E+E++ + + D DDDDE+EFDDMK
Sbjct: 244 KEAFDPNNPANYGVIER-------DNVQGGGEEREERLVADGPKDDNDDDDDEEEFDDMK 296
Query: 281 EKDNIILAKLDAIDKKLEEKLAELEYTFGKKGKVLEEEIRDLAEERNELTEKKRRPLYRK 340
E+D+I+L KL+AIDKKLE KL+EL++TFGKKGK LEEEIR+LAE+RN LTEKKR+PLYRK
Sbjct: 297 ERDDILLEKLNAIDKKLEIKLSELDHTFGKKGKRLEEEIRELAEDRNALTEKKRQPLYRK 356
Query: 341 GFDVKLINVNRTCKVTKGGQVVKYTAMLACGNYNGVVGFAKAKGPAVPVALQK------- 393
G+DV +I+V + CKVTKGG+V +YTA++ CGNY G++G+AKAK A+QK
Sbjct: 357 GYDVHVIDVKKVCKVTKGGRVERYTALMVCGNYEGIIGYAKAKAETGQSAMQKLVLMVSF 416
Query: 394 ------AYEKCFQNLHFVERHEEHTIAHAIQTSFKKTKVYLWPAPTATGMKAGRIVQTIL 447
AYEKCFQNLH+VERHEEHTIAHAIQTS+KKTK
Sbjct: 417 ITTVKQAYEKCFQNLHYVERHEEHTIAHAIQTSYKKTK---------------------- 454
Query: 448 HLAGFKNVKSKVVGSRNPHNTVKAVFKALNAIETPRDVQEKFGRTVVEKYLL 499
V+GSRN +NTVKAV KALNA+ETP+DVQEKFGRTVVEKYLL
Sbjct: 455 -----------VIGSRNSYNTVKAVLKALNAVETPKDVQEKFGRTVVEKYLL 495
>ref|ZP_00314569.1| COG0098: Ribosomal protein S5 [Microbulbifer degradans 2-40]
Length = 170
Score = 119 bits (297), Expect = 3e-25
Identities = 65/165 (39%), Positives = 96/165 (57%), Gaps = 1/165 (0%)
Query: 331 EKKRRPLYRKGFDVKLINVNRTCKVTKGGQVVKYTAMLACGNYNGVVGFAKAKGPAVPVA 390
+ KR +G KL+ VNR K KGG++ +TA+ G+ NG VGF + K VP+A
Sbjct: 4 QNKREDSNAEGLQEKLVQVNRVAKTVKGGRIFGFTALTVVGDGNGKVGFGRGKAREVPIA 63
Query: 391 LQKAYEKCFQNLHFVERHEEHTIAHAIQTSFKKTKVYLWPAPTATGMKAGRIVQTILHLA 450
+QKA E +N+ VE + TI + + +KVY+ PA TG+ AG ++ +L +A
Sbjct: 64 IQKAMEAARRNMIQVELDGD-TIQYPTKGRHGASKVYMQPASAGTGVIAGGAMRAVLEIA 122
Query: 451 GFKNVKSKVVGSRNPHNTVKAVFKALNAIETPRDVQEKFGRTVVE 495
G +NV +K GS NP N V+A F+AL A+ +P V K G++V E
Sbjct: 123 GVQNVLAKCYGSTNPVNVVRATFEALRAMSSPERVAAKRGKSVEE 167
>ref|YP_156280.1| Ribosomal protein S5 [Idiomarina loihiensis L2TR]
gi|56180009|gb|AAV82731.1| Ribosomal protein S5
[Idiomarina loihiensis L2TR]
Length = 166
Score = 113 bits (282), Expect = 2e-23
Identities = 62/151 (41%), Positives = 88/151 (58%), Gaps = 1/151 (0%)
Query: 345 KLINVNRTCKVTKGGQVVKYTAMLACGNYNGVVGFAKAKGPAVPVALQKAYEKCFQNLHF 404
KLI VNR KV KGG++ +TA+ G+ G VGF K VP A+QKA EK +N+
Sbjct: 14 KLITVNRVAKVVKGGRIFSFTALTVVGDGKGKVGFGYGKAREVPAAIQKAMEKARRNMVT 73
Query: 405 VERHEEHTIAHAIQTSFKKTKVYLWPAPTATGMKAGRIVQTILHLAGFKNVKSKVVGSRN 464
V+ + T+ H ++ ++VY+ PA TG+ AG ++ +L ++G NV SK GS N
Sbjct: 74 VQLKGD-TLQHPVKGRHSGSQVYMQPASEGTGIIAGGAMRAVLEVSGVHNVLSKAYGSTN 132
Query: 465 PHNTVKAVFKALNAIETPRDVQEKFGRTVVE 495
P N V+A KALN +++P V K G V E
Sbjct: 133 PINVVRATIKALNGMKSPEQVAAKRGLRVDE 163
>gb|AAU38638.1| RpsE protein [Mannheimia succiniciproducens MBEL55E]
gi|52426086|ref|YP_089223.1| RpsE protein [Mannheimia
succiniciproducens MBEL55E]
Length = 166
Score = 113 bits (282), Expect = 2e-23
Identities = 63/151 (41%), Positives = 90/151 (58%), Gaps = 1/151 (0%)
Query: 345 KLINVNRTCKVTKGGQVVKYTAMLACGNYNGVVGFAKAKGPAVPVALQKAYEKCFQNLHF 404
KLI VNR K KGG+++ +TA+ G+ NG VGF K VP A+QKA EK +N+
Sbjct: 14 KLIAVNRVSKTVKGGRIMSFTALTVVGDGNGRVGFGYGKAREVPAAIQKAMEKARRNMIN 73
Query: 405 VERHEEHTIAHAIQTSFKKTKVYLWPAPTATGMKAGRIVQTILHLAGFKNVKSKVVGSRN 464
V HE T+ H ++ ++V++ PA TG+ AG ++ +L +AG +NV SK GS N
Sbjct: 74 VALHEG-TLQHPVKGIHTGSRVFMQPASEGTGIIAGGAMRAVLEVAGVRNVLSKAYGSTN 132
Query: 465 PHNTVKAVFKALNAIETPRDVQEKFGRTVVE 495
P N V+A AL +++P V K G+TV E
Sbjct: 133 PINVVRATIDALANMKSPEMVAAKRGKTVDE 163
>ref|ZP_00204534.1| COG0098: Ribosomal protein S5 [Actinobacillus pleuropneumoniae
serovar 1 str. 4074]
Length = 166
Score = 113 bits (282), Expect = 2e-23
Identities = 63/151 (41%), Positives = 91/151 (59%), Gaps = 1/151 (0%)
Query: 345 KLINVNRTCKVTKGGQVVKYTAMLACGNYNGVVGFAKAKGPAVPVALQKAYEKCFQNLHF 404
KLI VNR K KGG+++ +TA+ G+ NG VGF K VP A+QKA EK +N+
Sbjct: 14 KLIAVNRVSKTVKGGRIMSFTALTVVGDGNGRVGFGYGKAREVPAAIQKAMEKARRNMIN 73
Query: 405 VERHEEHTIAHAIQTSFKKTKVYLWPAPTATGMKAGRIVQTILHLAGFKNVKSKVVGSRN 464
V +E T+ H ++ S ++V++ PA TG+ AG ++ +L +AG +NV SK GS N
Sbjct: 74 VALNEG-TLQHPVKGSHTGSRVFMQPASEGTGIIAGGAMRAVLEVAGVRNVLSKAYGSTN 132
Query: 465 PHNTVKAVFKALNAIETPRDVQEKFGRTVVE 495
P N V+A AL +++P V K G+TV E
Sbjct: 133 PINVVRATIDALANMKSPEMVAAKRGKTVEE 163
>ref|NP_636298.1| 30S ribosomal protein S5 [Xanthomonas campestris pv. campestris
str. ATCC 33913] gi|21107125|gb|AAM35872.1| 30S
ribosomal protein S5 [Xanthomonas axonopodis pv. citri
str. 306] gi|21111937|gb|AAM40222.1| 30S ribosomal
protein S5 [Xanthomonas campestris pv. campestris str.
ATCC 33913] gi|66769625|ref|YP_244387.1| 30S ribosomal
protein S5 [Xanthomonas campestris pv. campestris str.
8004] gi|66574957|gb|AAY50367.1| 30S ribosomal protein
S5 [Xanthomonas campestris pv. campestris str. 8004]
gi|21241754|ref|NP_641336.1| 30S ribosomal protein S5
[Xanthomonas axonopodis pv. citri str. 306]
gi|58583189|ref|YP_202205.1| 30S ribosomal protein S5
[Xanthomonas oryzae pv. oryzae KACC10331]
gi|58427783|gb|AAW76820.1| 30S ribosomal protein S5
[Xanthomonas oryzae pv. oryzae KACC10331]
gi|54039524|sp|P66587|RS5_XANCP 30S ribosomal protein S5
gi|54041973|sp|P66586|RS5_XANAC 30S ribosomal protein S5
Length = 180
Score = 112 bits (281), Expect = 2e-23
Identities = 67/177 (37%), Positives = 98/177 (54%), Gaps = 4/177 (2%)
Query: 322 LAEER---NELTEKKRRPLYRKGFDVKLINVNRTCKVTKGGQVVKYTAMLACGNYNGVVG 378
+AEER ++ R G KL+ VNR K KGG+ +TA+ G+ G VG
Sbjct: 1 MAEERAPRGRDRDRNREEKVDDGMIEKLVAVNRVSKTVKGGRQFTFTALTVVGDGLGKVG 60
Query: 379 FAKAKGPAVPVALQKAYEKCFQNLHFVERHEEHTIAHAIQTSFKKTKVYLWPAPTATGMK 438
F K VPVA+QK+ E+ +NL V+ + T+ HA+++ +VY+ PA TG+
Sbjct: 61 FGYGKAREVPVAIQKSMEQARKNLATVDLNNG-TLWHAVKSGHGAARVYMQPASEGTGVI 119
Query: 439 AGRIVQTILHLAGFKNVKSKVVGSRNPHNTVKAVFKALNAIETPRDVQEKFGRTVVE 495
AG ++ +L G KNV +K VGSRNP N V+A K L+ +++P V K G+ V E
Sbjct: 120 AGGAMRAVLEAVGVKNVLAKAVGSRNPINLVRATLKGLSEVQSPARVAAKRGKKVEE 176
>gb|AAN66101.1| ribosomal protein S5 [Pseudomonas putida KT2440]
gi|26987212|ref|NP_742637.1| ribosomal protein S5
[Pseudomonas putida KT2440]
gi|37999420|sp|Q88QL8|RS5_PSEPK 30S ribosomal protein S5
Length = 166
Score = 112 bits (281), Expect = 2e-23
Identities = 60/156 (38%), Positives = 93/156 (59%), Gaps = 1/156 (0%)
Query: 340 KGFDVKLINVNRTCKVTKGGQVVKYTAMLACGNYNGVVGFAKAKGPAVPVALQKAYEKCF 399
+G+ KL+ VNR K KGG++ +TA+ G+ G VGF + K VP A+QKA E
Sbjct: 10 EGYIEKLVQVNRVAKTVKGGRIFTFTALTVVGDGKGRVGFGRGKSREVPAAIQKAMEAAR 69
Query: 400 QNLHFVERHEEHTIAHAIQTSFKKTKVYLWPAPTATGMKAGRIVQTILHLAGFKNVKSKV 459
+N+ V+ + T+ +A + + +KVY+ PA TG+ AG ++ +L +AG +NV +K
Sbjct: 70 RNMIQVDL-KGTTLQYATKAAHGASKVYMQPASEGTGIIAGGAMRAVLEVAGVQNVLAKC 128
Query: 460 VGSRNPHNTVKAVFKALNAIETPRDVQEKFGRTVVE 495
GS NP N V A FK L A+++P + K G++V E
Sbjct: 129 YGSTNPVNVVYATFKGLKAMQSPESIAAKRGKSVEE 164
>ref|NP_790490.1| ribosomal protein S5 [Pseudomonas syringae pv. tomato str. DC3000]
gi|28851107|gb|AAO54185.1| ribosomal protein S5
[Pseudomonas syringae pv. tomato str. DC3000]
gi|66047758|ref|YP_237599.1| Ribosomal protein S5,
bacterial and organelle form [Pseudomonas syringae pv.
syringae B728a] gi|63258465|gb|AAY39561.1| Ribosomal
protein S5, bacterial and organelle form [Pseudomonas
syringae pv. syringae B728a]
gi|37999396|sp|Q889V4|RS5_PSESM 30S ribosomal protein S5
Length = 166
Score = 112 bits (280), Expect = 3e-23
Identities = 59/156 (37%), Positives = 93/156 (58%), Gaps = 1/156 (0%)
Query: 340 KGFDVKLINVNRTCKVTKGGQVVKYTAMLACGNYNGVVGFAKAKGPAVPVALQKAYEKCF 399
+G+ KL+ VNR K KGG++ +TA+ G+ G VGF + K VP A+QKA E
Sbjct: 10 EGYIEKLVQVNRVAKTVKGGRIFTFTALTVVGDGKGRVGFGRGKSREVPAAIQKAMEAAR 69
Query: 400 QNLHFVERHEEHTIAHAIQTSFKKTKVYLWPAPTATGMKAGRIVQTILHLAGFKNVKSKV 459
+N+ V+ + T+ +A++++ +KVY+ PA TG+ AG ++ +L +AG +NV +K
Sbjct: 70 RNMIQVDLNGT-TLQYAMKSAHGASKVYMQPASEGTGIIAGGAMRAVLEVAGVQNVLAKC 128
Query: 460 VGSRNPHNTVKAVFKALNAIETPRDVQEKFGRTVVE 495
GS NP N V A FK L +++P + K G+ V E
Sbjct: 129 YGSTNPVNVVHATFKGLKGMQSPESIAAKRGKRVEE 164
>ref|NP_796653.1| ribosomal protein S5 [Vibrio parahaemolyticus RIMD 2210633]
gi|28805256|dbj|BAC58537.1| ribosomal protein S5 [Vibrio
parahaemolyticus RIMD 2210633]
gi|31340378|sp|Q87SZ6|RS5_VIBPA 30S ribosomal protein S5
Length = 167
Score = 112 bits (280), Expect = 3e-23
Identities = 63/161 (39%), Positives = 91/161 (56%), Gaps = 1/161 (0%)
Query: 333 KRRPLYRKGFDVKLINVNRTCKVTKGGQVVKYTAMLACGNYNGVVGFAKAKGPAVPVALQ 392
K + + KLI VNR K KGG+++ +TA+ G+ NG VGF K VP A+Q
Sbjct: 3 KEQQVQANDLQEKLIAVNRVSKTVKGGRIMSFTALTVVGDGNGRVGFGYGKAREVPAAIQ 62
Query: 393 KAYEKCFQNLHFVERHEEHTIAHAIQTSFKKTKVYLWPAPTATGMKAGRIVQTILHLAGF 452
KA EK +N+ + +E T+ H ++ +KVY+ PA TG+ AG ++ +L +AG
Sbjct: 63 KAMEKARRNMTTIALNEG-TLHHPVKGRHSGSKVYMQPAAEGTGVIAGGAMRAVLEVAGV 121
Query: 453 KNVKSKVVGSRNPHNTVKAVFKALNAIETPRDVQEKFGRTV 493
NV SK GS NP N V+A AL ++++P V K G TV
Sbjct: 122 HNVLSKAYGSTNPINIVRATIDALGSMKSPEMVAAKRGLTV 162
>gb|AAS73101.1| predicted ribosomal protein S5 [uncultured marine gamma
proteobacterium EBAC20E09]
Length = 169
Score = 112 bits (280), Expect = 3e-23
Identities = 60/151 (39%), Positives = 90/151 (58%), Gaps = 1/151 (0%)
Query: 345 KLINVNRTCKVTKGGQVVKYTAMLACGNYNGVVGFAKAKGPAVPVALQKAYEKCFQNLHF 404
KL+ VNR KV KGG++ +TA+ G+ G VGF + K VP+A+QKA E +++
Sbjct: 18 KLVQVNRVAKVVKGGRIFGFTALTVVGDGKGRVGFGRGKAKEVPIAIQKAMENARRSMVE 77
Query: 405 VERHEEHTIAHAIQTSFKKTKVYLWPAPTATGMKAGRIVQTILHLAGFKNVKSKVVGSRN 464
VE + T+ + ++ KVY+ PA TG+ AG ++ +L LAG +NV +K GS N
Sbjct: 78 VELNNT-TLWYPVKAKHGSAKVYMQPASEGTGIIAGGAMRAVLELAGVQNVLAKCYGSTN 136
Query: 465 PHNTVKAVFKALNAIETPRDVQEKFGRTVVE 495
P N V+A AL+A+E+P V + G+ V E
Sbjct: 137 PVNVVRATINALSAMESPEKVATRRGKKVEE 167
>ref|ZP_00262639.1| COG0098: Ribosomal protein S5 [Pseudomonas fluorescens PfO-1]
Length = 166
Score = 112 bits (280), Expect = 3e-23
Identities = 60/156 (38%), Positives = 93/156 (59%), Gaps = 1/156 (0%)
Query: 340 KGFDVKLINVNRTCKVTKGGQVVKYTAMLACGNYNGVVGFAKAKGPAVPVALQKAYEKCF 399
+G+ KL+ VNR K KGG++ +TA+ G+ G VGF + K VP A+QKA E
Sbjct: 10 EGYIEKLVQVNRVAKTVKGGRIFTFTALTVVGDGKGRVGFGRGKSREVPAAIQKAMEAAR 69
Query: 400 QNLHFVERHEEHTIAHAIQTSFKKTKVYLWPAPTATGMKAGRIVQTILHLAGFKNVKSKV 459
+N+ V+ + T+ +A++++ +KVY+ PA TG+ AG ++ +L +AG +NV +K
Sbjct: 70 RNMIQVDLNGT-TLQYAMKSAHGASKVYMQPASEGTGIIAGGAMRAVLEVAGVQNVLAKC 128
Query: 460 VGSRNPHNTVKAVFKALNAIETPRDVQEKFGRTVVE 495
GS NP N V A FK L A+++P + K G V E
Sbjct: 129 YGSTNPVNVVHATFKGLKAMQSPESIAAKRGLRVEE 164
>gb|AAP96679.1| 30S ribosomal protein S5 [Haemophilus ducreyi 35000HP]
gi|33152937|ref|NP_874290.1| 30S ribosomal protein S5
[Haemophilus ducreyi 35000HP]
Length = 166
Score = 112 bits (279), Expect = 4e-23
Identities = 63/151 (41%), Positives = 90/151 (58%), Gaps = 1/151 (0%)
Query: 345 KLINVNRTCKVTKGGQVVKYTAMLACGNYNGVVGFAKAKGPAVPVALQKAYEKCFQNLHF 404
KLI VNR K KGG+++ +TA+ G+ NG VGF K VP A+QKA EK +N+
Sbjct: 14 KLIAVNRVSKTVKGGRIMSFTALTVVGDGNGRVGFGYGKAREVPAAIQKAMEKARRNMIN 73
Query: 405 VERHEEHTIAHAIQTSFKKTKVYLWPAPTATGMKAGRIVQTILHLAGFKNVKSKVVGSRN 464
V +E T+ H ++ S ++V++ PA TG+ AG ++ +L +AG NV SK GS N
Sbjct: 74 VALNEG-TLQHPVKGSHTGSRVFMQPASEGTGIIAGGAMRAVLEVAGVHNVLSKAYGSTN 132
Query: 465 PHNTVKAVFKALNAIETPRDVQEKFGRTVVE 495
P N V+A AL +++P V K G+TV E
Sbjct: 133 PINVVRATIDALANMKSPEMVAAKRGKTVEE 163
>gb|AAK03482.1| RpS5 [Pasteurella multocida subsp. multocida str. Pm70]
gi|15603263|ref|NP_246337.1| RpS5 [Pasteurella multocida
subsp. multocida str. Pm70]
gi|26399486|sp|Q9CL47|RS5_PASMU 30S ribosomal protein S5
Length = 166
Score = 112 bits (279), Expect = 4e-23
Identities = 63/151 (41%), Positives = 91/151 (59%), Gaps = 1/151 (0%)
Query: 345 KLINVNRTCKVTKGGQVVKYTAMLACGNYNGVVGFAKAKGPAVPVALQKAYEKCFQNLHF 404
KLI VNR K KGG+++ +TA+ G+ NG VGF K VP A+QKA EK +N+
Sbjct: 14 KLIAVNRVSKTVKGGRIMSFTALTVVGDGNGRVGFGYGKAREVPAAIQKAMEKARRNMIN 73
Query: 405 VERHEEHTIAHAIQTSFKKTKVYLWPAPTATGMKAGRIVQTILHLAGFKNVKSKVVGSRN 464
V +E T+ H I+ + ++V++ PA TG+ AG ++ +L +AG +NV SK GS N
Sbjct: 74 VALNEG-TLQHPIKGAHTGSRVFMQPASEGTGIIAGGAMRAVLEVAGVRNVLSKAYGSTN 132
Query: 465 PHNTVKAVFKALNAIETPRDVQEKFGRTVVE 495
P N V+A AL +++P V K G+TV E
Sbjct: 133 PINVVRATIDALANMKSPEMVAAKRGKTVDE 163
>ref|ZP_00147210.1| COG0098: Ribosomal protein S5 [Psychrobacter sp. 273-4]
Length = 171
Score = 111 bits (278), Expect = 5e-23
Identities = 63/170 (37%), Positives = 96/170 (56%), Gaps = 4/170 (2%)
Query: 326 RNELTEKKRRPLYRKGFDVKLINVNRTCKVTKGGQVVKYTAMLACGNYNGVVGFAKAKGP 385
RN+ +K + G +L+ V+R KV KGG++ +TA+ G+ NG VGF + K
Sbjct: 3 RNDKNDKNEQT---DGLVERLVTVDRVAKVVKGGRIFSFTALTVVGDGNGRVGFGRGKAR 59
Query: 386 AVPVALQKAYEKCFQNLHFVERHEEHTIAHAIQTSFKKTKVYLWPAPTATGMKAGRIVQT 445
VP A+QKA E +N+ VE ++ T+ H I+ +KVY+ PA TG+ AG ++
Sbjct: 60 EVPAAIQKALEAAKRNMITVELNDA-TLYHPIKARHGASKVYMQPASEGTGVIAGGAMRA 118
Query: 446 ILHLAGFKNVKSKVVGSRNPHNTVKAVFKALNAIETPRDVQEKFGRTVVE 495
+L +AG K+V +K GS N N V+A F L + TP + K G++V E
Sbjct: 119 VLEVAGVKDVLTKCYGSTNTANVVRATFNGLRDMSTPEKMAAKRGKSVDE 168
>ref|NP_819299.1| ribosomal protein S5 [Coxiella burnetii RSA 493]
gi|29540869|gb|AAO89813.1| ribosomal protein S5
[Coxiella burnetii RSA 493]
Length = 168
Score = 111 bits (277), Expect = 6e-23
Identities = 61/155 (39%), Positives = 89/155 (57%), Gaps = 1/155 (0%)
Query: 341 GFDVKLINVNRTCKVTKGGQVVKYTAMLACGNYNGVVGFAKAKGPAVPVALQKAYEKCFQ 400
G KL+ V RT KV KGG+V ++A++ G+ +G VGF K VP A+QKA E +
Sbjct: 12 GIQEKLVAVRRTAKVVKGGRVFGFSALVVAGDGDGKVGFGLGKAREVPSAIQKATENARR 71
Query: 401 NLHFVERHEEHTIAHAIQTSFKKTKVYLWPAPTATGMKAGRIVQTILHLAGFKNVKSKVV 460
N+ V + T+ HAI+ + + V + PA TG+ AG ++ I + G +NV +K +
Sbjct: 72 NMISVPLYGA-TLHHAIKATHASSTVLMLPASEGTGVIAGNAMRAIFEVMGVQNVLAKCI 130
Query: 461 GSRNPHNTVKAVFKALNAIETPRDVQEKFGRTVVE 495
GS NP N V+A FK L +ETP V K G+ + E
Sbjct: 131 GSSNPINVVRATFKGLKQMETPESVAAKRGKAIEE 165
>gb|AAR05296.1| ribosomal protein S5 [uncultured marine gamma proteobacterium
EB000-45B06] gi|40063194|gb|AAR38031.1| ribosomal
protein S5 [uncultured bacterium 562]
Length = 169
Score = 110 bits (276), Expect = 8e-23
Identities = 59/149 (39%), Positives = 89/149 (59%), Gaps = 1/149 (0%)
Query: 345 KLINVNRTCKVTKGGQVVKYTAMLACGNYNGVVGFAKAKGPAVPVALQKAYEKCFQNLHF 404
KL+ VNR KV KGG++ +TA+ G+ NG VGF + K VP+A+QKA E +++
Sbjct: 18 KLVQVNRVAKVVKGGRIFGFTALTVVGDGNGRVGFGRGKAKEVPIAIQKAMENARRSMVE 77
Query: 405 VERHEEHTIAHAIQTSFKKTKVYLWPAPTATGMKAGRIVQTILHLAGFKNVKSKVVGSRN 464
VE + T+ + ++ VY+ PA TG+ AG ++ +L LAG +NV +K GS N
Sbjct: 78 VELNNT-TLWYPVKAKHGSANVYMQPASEGTGIIAGGAMRAVLELAGVQNVLAKCYGSTN 136
Query: 465 PHNTVKAVFKALNAIETPRDVQEKFGRTV 493
P N V+A AL+A+E+P V + G+ V
Sbjct: 137 PVNVVRATINALSAMESPDTVAARRGKKV 165
>ref|YP_094390.1| 30S ribosomal protein S5 [Legionella pneumophila subsp. pneumophila
str. Philadelphia 1] gi|53753170|emb|CAH14617.1| 30S
ribosomal subunit protein S5 [Legionella pneumophila
str. Lens] gi|53750167|emb|CAH11559.1| 30S ribosomal
subunit protein S5 [Legionella pneumophila str. Paris]
gi|54296382|ref|YP_122751.1| 30S ribosomal subunit
protein S5 [Legionella pneumophila str. Paris]
gi|54293338|ref|YP_125753.1| 30S ribosomal subunit
protein S5 [Legionella pneumophila str. Lens]
gi|52627702|gb|AAU26443.1| 30S ribosomal protein S5
[Legionella pneumophila subsp. pneumophila str.
Philadelphia 1]
Length = 168
Score = 110 bits (276), Expect = 8e-23
Identities = 59/155 (38%), Positives = 92/155 (59%), Gaps = 1/155 (0%)
Query: 341 GFDVKLINVNRTCKVTKGGQVVKYTAMLACGNYNGVVGFAKAKGPAVPVALQKAYEKCFQ 400
G+ KL++V RT KV KGG+V + ++ G+ G VGF + K VP+A+QKA ++ +
Sbjct: 11 GYQEKLVSVTRTAKVVKGGRVFGFAVLVVVGDGKGKVGFGRGKAREVPIAIQKAMDQAKK 70
Query: 401 NLHFVERHEEHTIAHAIQTSFKKTKVYLWPAPTATGMKAGRIVQTILHLAGFKNVKSKVV 460
N+ ++ TI H I ++ +KV++ PA TG+ AG ++ +L + G +N+ +K +
Sbjct: 71 NMVYIPLSGT-TIFHEITWNYGASKVFMKPASEGTGIIAGGAMRAVLEVLGVQNILAKSI 129
Query: 461 GSRNPHNTVKAVFKALNAIETPRDVQEKFGRTVVE 495
GS NP N V+A AL I TP V K G+TV E
Sbjct: 130 GSTNPSNIVRATIGALTHIGTPDYVAAKRGKTVEE 164
Database: nr
Posted date: Jul 5, 2005 12:34 AM
Number of letters in database: 863,360,394
Number of sequences in database: 2,540,612
Lambda K H
0.315 0.134 0.379
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 844,190,397
Number of Sequences: 2540612
Number of extensions: 37739599
Number of successful extensions: 198880
Number of sequences better than 10.0: 1790
Number of HSP's better than 10.0 without gapping: 348
Number of HSP's successfully gapped in prelim test: 1523
Number of HSP's that attempted gapping in prelim test: 192634
Number of HSP's gapped (non-prelim): 5143
length of query: 499
length of database: 863,360,394
effective HSP length: 132
effective length of query: 367
effective length of database: 527,999,610
effective search space: 193775856870
effective search space used: 193775856870
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 77 (34.3 bits)
Lotus: description of TM0253.6