BLAST2 result
BLASTP 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TM0252c.1
(325 letters)
Database: nr
2,540,612 sequences; 863,360,394 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
emb|CAC44110.1| gag polyprotein [Cicer arietinum] 264 3e-69
emb|CAC44106.1| gag polyprotein [Cicer arietinum] 191 3e-47
gb|AAP53268.1| putative 22 kDa kafirin cluster; Ty3-Gypsy type [... 123 8e-27
prf||1510387A retrotransposon del1-46 119 1e-25
emb|CAC44109.1| putative gag polyprotein [Cicer arietinum] 119 1e-25
emb|CAD40516.1| OSJNBa0023J03.1 [Oryza sativa (japonica cultivar... 119 2e-25
gb|AAX96295.1| retrotransposon protein, putative, Ty3-gypsy sub-... 117 4e-25
emb|CAD39763.2| OSJNBa0059D20.6 [Oryza sativa (japonica cultivar... 117 4e-25
gb|AAM00970.1| Putative retroelement [Oryza sativa] 117 5e-25
gb|AAP52680.1| putative polyprotein [Oryza sativa (japonica cult... 115 1e-24
gb|AAP52863.1| putative retroelement [Oryza sativa (japonica cul... 115 2e-24
ref|NP_908773.1| putative polyprotein [Oryza sativa (japonica cu... 115 2e-24
gb|AAP53512.1| putative polyprotein [Oryza sativa (japonica cult... 114 4e-24
emb|CAD40170.2| OSJNBa0061A09.9 [Oryza sativa (japonica cultivar... 114 5e-24
ref|XP_475569.1| putative polyprotein [Oryza sativa (japonica cu... 114 5e-24
gb|AAS90689.2| putative polyprotein [Oryza sativa (japonica cult... 114 5e-24
emb|CAD41450.1| OSJNBa0019D11.8 [Oryza sativa (japonica cultivar... 113 7e-24
emb|CAC44108.1| putative gag polyprotein [Cicer arietinum] 113 7e-24
gb|AAX95203.1| retrotransposon protein, putative, Ty3-gypsy sub-... 113 9e-24
gb|AAX95200.1| retrotransposon protein, putative, Ty3-gypsy sub-... 113 9e-24
>emb|CAC44110.1| gag polyprotein [Cicer arietinum]
Length = 277
Score = 264 bits (674), Expect = 3e-69
Identities = 138/264 (52%), Positives = 175/264 (66%), Gaps = 14/264 (5%)
Query: 24 NQLAEMVATLVQAMTVQTNDNAQRRAAEDARELHLRQREASLDQNRGLNNFIRQNPPKFT 83
+Q+AE + + ++ QT AA+ R+L R RE ++RGL +F R NPPKF
Sbjct: 16 DQMAEAMNNMAASVAAQT-------AAKTQRDLEKRGREIRAAESRGLVDFRRYNPPKFK 68
Query: 84 GGTDPDEADLWIQEIEKIFEVLQTSEGAKVGLATYLLLGDAEYWWRGARGMMEANHVEVN 143
G ++AD WIQE+EKIF+++ G KV ATY+LLGDAEYWWR AR +M A H EVN
Sbjct: 69 GDEGSEKADQWIQEVEKIFDMINCQAGVKVSYATYMLLGDAEYWWRSARLLMGAAHEEVN 128
Query: 144 WNSFRAAFLEKYFPDSARDERESQFLTLRQGSMTIPEYAAKLESLAKHFRFFRDQVDEPY 203
W SF+ FL+KYFP S R + FL L QGS+T+ EYAAK ESL++HFRFFR+++DEP+
Sbjct: 129 WESFKRKFLDKYFPMSTRTKLGDDFLKLHQGSLTVGEYAAKFESLSRHFRFFREEIDEPF 188
Query: 204 MCKRFVRGLRADIEDSVRPLGIMRFQALVEKATEVELMKNRRMDRAG---TGGPMRTSSR 260
MC RF GL+ +I+DSV PLGI RFQALVEK EVE MKN+R R G +GGP R
Sbjct: 189 MCHRFQDGLKYEIQDSVLPLGIQRFQALVEKCREVEDMKNKRASRVGNFNSGGPSRA--- 245
Query: 261 SYQGKGKLQRKKPYQRPTGEGFTP 284
+YQ +GK Q KPY RP P
Sbjct: 246 TYQNRGK-QVAKPYNRPQNNNGGP 268
>emb|CAC44106.1| gag polyprotein [Cicer arietinum]
Length = 209
Score = 191 bits (485), Expect = 3e-47
Identities = 100/205 (48%), Positives = 131/205 (63%), Gaps = 10/205 (4%)
Query: 22 NAN---QLAEMVATLVQAMTVQTNDNAQRRAAEDARELHLRQREASLDQNRGLNNFIRQN 78
NAN Q+AE + + ++ QT AA+ R+L R RE ++RGL +F R N
Sbjct: 12 NANRNDQMAEAMNNMAASVAAQT-------AAKTQRDLEKRGREIRAAESRGLEDFRRYN 64
Query: 79 PPKFTGGTDPDEADLWIQEIEKIFEVLQTSEGAKVGLATYLLLGDAEYWWRGARGMMEAN 138
PPKF G ++AD WIQE+EKI ++++ G V ATY+LLGDAEYW R R +M A
Sbjct: 65 PPKFKGDESSEKADQWIQEVEKIIDMIKCQAGVTVSYATYMLLGDAEYWRRSGRLLMGAA 124
Query: 139 HVEVNWNSFRAAFLEKYFPDSARDERESQFLTLRQGSMTIPEYAAKLESLAKHFRFFRDQ 198
H EVNW SF+ FL+KYFP S R + FL L QGSMT+ EYAAK SL++HFRF R++
Sbjct: 125 HEEVNWESFKRKFLDKYFPMSTRTKLGDDFLKLHQGSMTVGEYAAKFGSLSRHFRFVREE 184
Query: 199 VDEPYMCKRFVRGLRADIEDSVRPL 223
DEP+M F GL+ +I+DSV PL
Sbjct: 185 TDEPFMIHCFQDGLKYEIQDSVLPL 209
>gb|AAP53268.1| putative 22 kDa kafirin cluster; Ty3-Gypsy type [Oryza sativa
(japonica cultivar-group)] gi|37533358|ref|NP_920981.1|
putative 22 kDa kafirin cluster; Ty3-Gypsy type [Oryza
sativa (japonica cultivar-group)]
gi|21327374|gb|AAM48279.1| Putative 22 kDa kafirin
cluster; Ty3-Gypsy type [Oryza sativa (japonica
cultivar-group)] gi|18767374|gb|AAL79340.1| Putative 22
kDa kafirin cluster; Ty3-Gypsy type [Oryza sativa]
Length = 1230
Score = 123 bits (308), Expect = 8e-27
Identities = 86/284 (30%), Positives = 137/284 (47%), Gaps = 25/284 (8%)
Query: 54 RELHLRQREASLDQNR-GLNNFIRQNPPKFTGGTDPDEADLWIQEIEKIFEVLQTSEGAK 112
R++ + +R D NR GL F + PP F+G +P EA+ WI +EK FE + ++ K
Sbjct: 53 RQMEILERITKSDANRNGLGEFQKLKPPTFSGTANPLEAEEWIVAMEKSFEAMGCTDKEK 112
Query: 113 VGLATYLLLGDAEYWWRGARGMMEANHVEVNWNSFRAAFLEKYFPDSARDERESQFLTLR 172
+ ATY+L A WW A + + + W F+ AF +KYFP+S + +E +FL L+
Sbjct: 113 IIYATYMLQSSAFEWW-DAHKKSYSERIFITWELFKEAFYKKYFPESVKRMKEKEFLELK 171
Query: 173 QGSMTIPEYAAKLESLAKHFRFFRDQVD-EPYMCKRFVRGLRADIEDSVRPLGIMRFQAL 231
QG+ ++ EY + LA RF + V + +RF GLR ++ V + F+ +
Sbjct: 172 QGNKSVAEYEIEFSRLA---RFAPEFVQTDGSKARRFESGLRQPLKRRVEAFELTIFREV 228
Query: 232 VEKATEVEL-MKNRRMDRAGTGGPMRTSSRSYQGK------GKLQRKKPYQRPTGEGFTP 284
V KA +E +R++ +T++ QG+ G++QRK +
Sbjct: 229 VSKAQLLEKGYHEQRIEHGQPQKKFKTNNPQNQGRFRGNYSGQMQRKSSENQGRKCPICQ 288
Query: 285 GLYRPTIAAAGGAGSQAGSREITCFKCGEIGHYSTKCP---KGK 325
G + P+I CF+CGE GH +CP KGK
Sbjct: 289 GSHVPSICPNCWG---------RCFECGEAGHTRYQCPLLQKGK 323
>prf||1510387A retrotransposon del1-46
Length = 1443
Score = 119 bits (298), Expect = 1e-25
Identities = 84/290 (28%), Positives = 136/290 (45%), Gaps = 28/290 (9%)
Query: 31 ATLVQAMTVQTNDNAQRRAAEDARELHLRQREASLDQNRGLNNFIRQNPPKFTGGTDPDE 90
A L+ + TN Q+ A E RQ E+ + R + F NPP F G DP E
Sbjct: 20 AQLLAVLQNMTNILHQQAAISHQAEQSARQGES---RPRLIKEFKGLNPPIFKGDPDPLE 76
Query: 91 ADLWIQEIEKIFEVLQTSEGAKVGLATYLLLGDAEYWWRGARGMMEANHVEVNWNSFRAA 150
A WI+ + KI + L ++ KV LA++ L G+AE+WW E + ++ W+ F
Sbjct: 77 AHRWIRHVTKILDTLGVTDEQKVILASFQLQGEAEFWWDAKVRSREDDTTQIKWDEFVEV 136
Query: 151 FLEKYFPDSARDERESQFLTLRQGSMTIPEYAAKLESLAKHFRFFRDQVD-EPYMCKRFV 209
F EK+FPD+ RD+ E +F+TL QGS+T+ +Y AK E L+++ + QVD KRF
Sbjct: 137 FTEKFFPDTVRDDLE-RFMTLVQGSLTVAQYEAKFEELSRYAPY---QVDINIRKVKRFE 192
Query: 210 RGLRADIEDSVRPLGIMRFQALVEKATEVELMKNRRMDRAGTGGPMRTSSRSYQGKGKLQ 269
+GL+ I + I ++ ++ +A VE + R + S ++
Sbjct: 193 QGLKLSITKQLSSHLIKDYREVITRALSVEKREQREAQIMA-----KRSKKNRGHNHPYT 247
Query: 270 RKKPYQRPTGEGFTPGLYRPTIAAAGGAGSQAGSREITCFKCGEIGHYST 319
RK+P+++ + P P C+ G+ GH+ +
Sbjct: 248 RKEPHRQSNDKSQCPNPLSP---------------GKVCYSYGQPGHFKS 282
>emb|CAC44109.1| putative gag polyprotein [Cicer arietinum]
Length = 115
Score = 119 bits (298), Expect = 1e-25
Identities = 62/103 (60%), Positives = 76/103 (73%), Gaps = 7/103 (6%)
Query: 178 IPEYAAKLESLAKHFRFFRDQVDEPYMCKRFVRGLRADIEDSVRPLGIMRFQALVEKATE 237
+ EYAAK ESL++HFRFFR+++DEP+MC RF GL+ +I+DSV PLGI RFQALVEK +
Sbjct: 1 VGEYAAKFESLSRHFRFFREEIDEPFMCHRFQDGLKYEIQDSVLPLGIQRFQALVEKCRK 60
Query: 238 VELMKNRRMDRAG---TGGPMRTSSRSYQGKGKLQRKKPYQRP 277
VE MKN+R R G +GGP R +YQ KGK Q KPY RP
Sbjct: 61 VEDMKNKRASRVGNFNSGGPSRV---NYQNKGK-QVAKPYNRP 99
>emb|CAD40516.1| OSJNBa0023J03.1 [Oryza sativa (japonica cultivar-group)]
gi|50922727|ref|XP_471724.1| OSJNBa0023J03.1 [Oryza
sativa (japonica cultivar-group)]
Length = 1827
Score = 119 bits (297), Expect = 2e-25
Identities = 90/326 (27%), Positives = 141/326 (42%), Gaps = 37/326 (11%)
Query: 28 EMVATLVQAMTVQTNDNAQRRAAEDARELHLRQREASLDQNRGLNNFIRQNPPKFTGGTD 87
+M+A ++Q M Q + +R + A + H Q+ L F+R PP F+ T+
Sbjct: 358 QMMAAMMQQMQ-QQHQQMHQRMMQHAEQQH--QQFGPPPPQSKLPEFLRVRPPTFSSTTN 414
Query: 88 PDEADLWIQEIEKIFEVLQTSEGAKVGLATYLLLGDAEYWWRGARGMMEANHVEVNWNSF 147
P EA+ W+ IEK +LQ ++ KV AT+ L G A WW EV W F
Sbjct: 415 PMEANDWLHAIEKKLNLLQCNDQEKVAFATHQLQGPASAWWDNHMATRPPG-TEVTWAEF 473
Query: 148 RAAFLEKYFPDSARDERESQFLTLRQGSMTIPEYAAKLESLAKHFRFFRDQVDEPYMCKR 207
+F + PD +++ +F L QG+MT+ EY + LA++ D + ++
Sbjct: 474 CRSFRKAQVPDGVVAQKKREFRALHQGNMTVTEYLHEFNRLARYAP--EDVRTDAEKQEK 531
Query: 208 FVRGLRADIEDSVRPLGIMRFQALVEKATEVELMKNRRMDR------------------- 248
F+ GL ++ + + F+ LV+KA E +N+ MDR
Sbjct: 532 FMAGLDDELTNQLISGDYADFERLVDKAIRQEDQRNK-MDRKRKAAQFRSNQGSQHRPRF 590
Query: 249 --AGTGGPMR---------TSSRSYQGKGKLQRKKPYQRPTGEGFTPGLYRPTIAAAGGA 297
GGP SS +QG Q + Q G P + A A
Sbjct: 591 TPGQQGGPTTMIVRQHRPFNSSNFHQGTSGSQNHQGGQPNRGAAPRPPMAPAQSAQPAQA 650
Query: 298 GSQAGSREITCFKCGEIGHYSTKCPK 323
+ G++ +CF CGE+GH++ KCPK
Sbjct: 651 KKETGAKPGSCFNCGELGHFADKCPK 676
>gb|AAX96295.1| retrotransposon protein, putative, Ty3-gypsy sub-class [Oryza
sativa (japonica cultivar-group)]
Length = 1760
Score = 117 bits (294), Expect = 4e-25
Identities = 85/309 (27%), Positives = 145/309 (46%), Gaps = 21/309 (6%)
Query: 28 EMVATLVQAMTVQTNDNAQRRAAEDARELHLRQREASLDQNRGLNNFIRQNPPKFTGGTD 87
+M+A+++Q M Q + +R + A + H Q+ L F+R PP F+ T+
Sbjct: 323 QMMASMMQQMQ-QQHQQMHQRMLQHAEQQH--QQFGPPPPQSKLPEFLRVRPPTFSNTTN 379
Query: 88 PDEADLWIQEIEKIFEVLQTSEGAKVGLATYLLLGDAEYWWRGARGMMEANHVEVNWNSF 147
P EA+ W+ IEK +LQ ++ KV AT+ L G A WW EV W F
Sbjct: 380 PMEANDWLHAIEKKLNLLQCNDQEKVAFATHQLQGPASAWWDNHMATRPPG-TEVTWAEF 438
Query: 148 RAAFLEKYFPDSARDERESQFLTLRQGSMTIPEYAAKLESLAKHFRFFRDQVDEPYMCKR 207
+F + PD +++ +F L QG+ T+ EY + L ++ D + ++
Sbjct: 439 CRSFRKAQVPDGVVAQKKREFRALHQGNRTVTEYLHEFNRLTRYAP--EDVRTDAEKQEK 496
Query: 208 FVRGLRADIEDSVRPLGIMRFQALVEKATEVELMKNRRMDRAGTGGPMRTSSRSYQ---- 263
F+ GL ++ + + + F+ LV+KA E +N +MDR R S+Q
Sbjct: 497 FMAGLDDELTNQLISGDYVDFERLVDKAIRQEDQRN-KMDRKRKAAQFRAHQGSHQRPHF 555
Query: 264 GKGK--------LQRKKPYQRPTGEGFTPGLYRPTIAAAGGA-GSQAGSREITCFKCGEI 314
G+ +++ +P+ P+ P R T+ + A + G++ +CF CGE+
Sbjct: 556 TPGQQGGPTTMIVRQYRPF-NPSNFPRAPVAVRTTMESGPSAQAKETGAKPGSCFNCGEL 614
Query: 315 GHYSTKCPK 323
GH++ KCPK
Sbjct: 615 GHFADKCPK 623
>emb|CAD39763.2| OSJNBa0059D20.6 [Oryza sativa (japonica cultivar-group)]
gi|50930427|ref|XP_474741.1| OSJNBa0059D20.6 [Oryza
sativa (japonica cultivar-group)]
Length = 1470
Score = 117 bits (294), Expect = 4e-25
Identities = 79/281 (28%), Positives = 129/281 (45%), Gaps = 13/281 (4%)
Query: 53 ARELHLRQREASLDQNRG---LNNFIRQNPPKFTGGTDPDEADLWIQEIEKIFEVLQTSE 109
A + L Q AS NRG F+R PP F +P +A+ W++ IEK +++ E
Sbjct: 27 ATQTQLLQAIASNQGNRGGSSFGEFMRTKPPTFATAEEPMDAEDWLRIIEKKLTLVRVRE 86
Query: 110 GAKVGLATYLLLGDAEYWWRGARGMMEANHVEVNWNSFRAAFLEKYFPDSARDERESQFL 169
KV A L G A WW + E + E NW F AF + + P + ++++F
Sbjct: 87 ADKVIFAANQLEGPAGDWWDTYKEAREEDAGEPNWEEFTTAFRDNFVPAAVMRMKKNEFR 146
Query: 170 TLRQGSMTIPEYAAKLESLAKHFRFFRDQVDEPYMCKRFVRGLRADIEDSVRPLGIMRFQ 229
LRQG+ T+ EY + LA++ RD DE +F+ GL ++ + FQ
Sbjct: 147 KLRQGNTTVQEYLNRFTQLARYAT--RDLADEEEKIDKFIEGLNDELRGPMIGQDHDSFQ 204
Query: 230 ALVEKATEVE----LMKNRRMDRAGTGGPMRTSSRSYQGKGKLQRKKPYQRPTGEGFTPG 285
+L+ K +E ++++ R R P +T+ + +G + + +
Sbjct: 205 SLINKVVRLENDRKVVEHNRKRRLAMNRPPQTAPQRPKGTTPSAWRPTVVTTSRPAASSN 264
Query: 286 LYRP-TIAAAGGAGSQAGSREI---TCFKCGEIGHYSTKCP 322
+RP TI +QA + + +CF CGE GH++ KCP
Sbjct: 265 FHRPVTIQNRAPTPNQAATGSVRPGSCFNCGEYGHFANKCP 305
>gb|AAM00970.1| Putative retroelement [Oryza sativa]
Length = 1425
Score = 117 bits (293), Expect = 5e-25
Identities = 85/296 (28%), Positives = 138/296 (45%), Gaps = 16/296 (5%)
Query: 28 EMVATLVQAMTVQTNDNAQRRAAEDARELHLRQREASLDQNRGLNNFIRQNPPKFTGGTD 87
+M+A ++Q M Q + +R + A + H Q+ L F+ PP F+ T+
Sbjct: 52 QMMAAMMQQMQ-QQHQQMHQRMLQHAEQQH--QQFGPPPPQSKLPEFLLVRPPTFSSTTN 108
Query: 88 PDEADLWIQEIEKIFEVLQTSEGAKVGLATYLLLGDAEYWWRGARGMMEANHVEVNWNSF 147
P EA+ W+ IEK +LQ ++ KV AT+ L G A WW EV W F
Sbjct: 109 PMEANDWLHAIEKKLNLLQCNDQEKVAFATHQLQGPASAWWDNHMATRPPG-TEVTWAEF 167
Query: 148 RAAFLEKYFPDSARDERESQFLTLRQGSMTIPEYAAKLESLAKHFRFFRDQVDEPYMCKR 207
+F + PD +++ +F L QG+ T+ EY + LA++ D + ++
Sbjct: 168 CRSFKKAQVPDGVVAQKKREFRALHQGNRTVTEYLHEFNRLARYAP--EDVRTDAEKQEK 225
Query: 208 FVRGLRADIEDSVRPLGIMRFQALVEKATEVELMKNRRMDRAGTGGPMRTSSRSYQGKGK 267
F+ GL ++ + + F+ LV+KA E +N +MDR + S+++ G G+
Sbjct: 226 FLAGLDDELTNQLISGDYADFERLVDKAIRQEDQRN-KMDRKSNFPQGASGSQNHHG-GQ 283
Query: 268 LQRKKPYQRPTGEGFTPGLYRPTIAAAGGAGSQAGSREITCFKCGEIGHYSTKCPK 323
R + P P P+ A G++ GS CF CGE+GH++ KCPK
Sbjct: 284 PNRGAAPRPP----MAPAQSGPSAQAKKETGAKPGS----CFNCGELGHFADKCPK 331
>gb|AAP52680.1| putative polyprotein [Oryza sativa (japonica cultivar-group)]
gi|37532182|ref|NP_920393.1| putative polyprotein [Oryza
sativa (japonica cultivar-group)]
gi|23266283|gb|AAN16322.1| putative polyprotein [Oryza
sativa (japonica cultivar-group)]
Length = 1796
Score = 115 bits (289), Expect = 1e-24
Identities = 88/326 (26%), Positives = 139/326 (41%), Gaps = 37/326 (11%)
Query: 28 EMVATLVQAMTVQTNDNAQRRAAEDARELHLRQREASLDQNRGLNNFIRQNPPKFTGGTD 87
+M+A ++Q M Q + +R + A + H Q+ L F+R PP F+ T+
Sbjct: 327 QMMAAMMQQMQ-QQHQQMHQRMMQHAEQQH--QQFGPPPPQSKLPEFLRVRPPTFSSTTN 383
Query: 88 PDEADLWIQEIEKIFEVLQTSEGAKVGLATYLLLGDAEYWWRGARGMMEANHVEVNWNSF 147
P EA+ W+ IEK +LQ ++ KV AT+ L G A WW EV W F
Sbjct: 384 PMEANDWLHAIEKKLNLLQCNDQEKVAFATHQLQGPASAWWDNHMATRPPG-TEVTWAEF 442
Query: 148 RAAFLEKYFPDSARDERESQFLTLRQGSMTIPEYAAKLESLAKHFRFFRDQVDEPYMCKR 207
+F + PD +++ +F L QG+ T+ EY + LA++ D + ++
Sbjct: 443 CRSFRKAQVPDGVVAQKKREFRALHQGNRTVTEYLQEFNRLARYAP--EDVRTDAEKQEK 500
Query: 208 FVRGLRADIEDSVRPLGIMRFQALVEKATEVELMKNRRMDR------------------- 248
F+ GL ++ + + F+ LV+KA E +N +MDR
Sbjct: 501 FMAGLDDELTNQLISGDYADFERLVDKAIRQEDQRN-KMDRKRKAAQFRAPQGSHQRPRF 559
Query: 249 --AGTGGPMR---------TSSRSYQGKGKLQRKKPYQRPTGEGFTPGLYRPTIAAAGGA 297
GGP SS +QG Q Q G P + + A
Sbjct: 560 TPGQQGGPTTMIVRQHRPFNSSNFHQGSSGSQNHHGGQPNRGAAPRPPMAPAQSGPSAQA 619
Query: 298 GSQAGSREITCFKCGEIGHYSTKCPK 323
+ G++ +CF CGE+GH++ KCPK
Sbjct: 620 KKETGAKPGSCFNCGELGHFADKCPK 645
>gb|AAP52863.1| putative retroelement [Oryza sativa (japonica cultivar-group)]
gi|37532548|ref|NP_920576.1| putative retroelement
[Oryza sativa (japonica cultivar-group)]
gi|15217216|gb|AAK92560.1| Putative retroelement [Oryza
sativa]
Length = 1714
Score = 115 bits (288), Expect = 2e-24
Identities = 91/330 (27%), Positives = 146/330 (43%), Gaps = 45/330 (13%)
Query: 28 EMVATLVQAMTVQTNDNAQRRAAEDARELHLRQREASLDQNRGLNNFIRQNPPKFTGGTD 87
+M+A ++Q M Q + +R + A + H Q+ L F+R PP F+ T+
Sbjct: 245 QMIAAMMQQMQ-QQHQQMHQRMMQHAEQQH--QQFGPPPPQSKLPEFLRVRPPTFSSTTN 301
Query: 88 PDEADLWIQEIEKIFEVLQTSEGAKVGLATYLLLGDAEYWWRGARGMMEANHVEVNWNSF 147
P EA+ W+ IEK +LQ ++ KV AT+ L G A WW EV W F
Sbjct: 302 PMEANDWLHAIEKKLNLLQCNDQEKVAFATHQLQGPASAWWDNHMATRPPG-TEVTWAEF 360
Query: 148 RAAFLEKYFPDSARDERESQFLTLRQGSMTIPEYAAKLESLAKHFRFFRDQVDEPYMCKR 207
+F + PD +++ +F L QG+ T+ EY + LA++ D + ++
Sbjct: 361 CRSFRKAQVPDGVVAQKKREFRALHQGNRTVTEYLHEFNRLARYAP--EDVRTDAEKQEK 418
Query: 208 FVRGLRADIEDSVRPLGIMRFQALVEKATEVELMKNRRMDRAGTGGPMRTSSRSYQGKGK 267
F+ GL ++ + + F+ LV+KA E +N+ MDR R ++QG +
Sbjct: 419 FMAGLDDELTNQLISGDYADFERLVDKAIRQEDQRNK-MDRKRKAAQFR----AHQGSHQ 473
Query: 268 LQRKKPYQR--PTG------EGFTPGLY---------------------RPTIAAAGG-- 296
R P Q+ PT F P + RP++A A
Sbjct: 474 RPRFTPGQQGGPTTMIVRQHRPFNPSNFHQGTSGSQNHHGSQPNRGAAPRPSVAPAQSGQ 533
Query: 297 ---AGSQAGSREITCFKCGEIGHYSTKCPK 323
A + G++ +CF CGE+GH++ KCPK
Sbjct: 534 PAQAKKETGAKPGSCFNCGELGHFADKCPK 563
>ref|NP_908773.1| putative polyprotein [Oryza sativa (japonica cultivar-group)]
Length = 1521
Score = 115 bits (287), Expect = 2e-24
Identities = 88/326 (26%), Positives = 139/326 (41%), Gaps = 37/326 (11%)
Query: 28 EMVATLVQAMTVQTNDNAQRRAAEDARELHLRQREASLDQNRGLNNFIRQNPPKFTGGTD 87
+M+A ++Q M Q + +R + A + H Q+ L F+R PP F+ T+
Sbjct: 52 QMMAAMMQQMQ-QQHQQMHQRMMQHAEQQH--QQFGPPPPQSKLPEFLRVRPPTFSSTTN 108
Query: 88 PDEADLWIQEIEKIFEVLQTSEGAKVGLATYLLLGDAEYWWRGARGMMEANHVEVNWNSF 147
P E + W+ IEK +LQ ++ KV AT+ L G A WW EV W F
Sbjct: 109 PMEVNDWLHAIEKKLNLLQCNDQEKVAFATHQLQGPASAWWDNHMATRPPG-TEVTWAEF 167
Query: 148 RAAFLEKYFPDSARDERESQFLTLRQGSMTIPEYAAKLESLAKHFRFFRDQVDEPYMCKR 207
+F + PD +++ +F L QG+ T+ EY + LA++ D + ++
Sbjct: 168 CRSFRKAQVPDGVVAQKKREFRALHQGNRTVTEYLHEFNRLARYAP--EDVRTDAEKQEK 225
Query: 208 FVRGLRADIEDSVRPLGIMRFQALVEKATEVELMKNRRMDR------------------- 248
F+ GL ++ + + F+ LV+KA E +N+ MDR
Sbjct: 226 FMAGLDDELTNQLISGDYADFERLVDKAIRQEDQRNK-MDRKRKAAQFRSNQGSQHRPRF 284
Query: 249 --AGTGGPMR---------TSSRSYQGKGKLQRKKPYQRPTGEGFTPGLYRPTIAAAGGA 297
GGP SS +QG Q + Q G P + A A
Sbjct: 285 TPGQQGGPTTMIVRQHRPFNSSNFHQGTSGSQNHQGGQPNRGAAPRPPMAPAQSAQPAQA 344
Query: 298 GSQAGSREITCFKCGEIGHYSTKCPK 323
+ G++ +CF CGE+GH++ KCPK
Sbjct: 345 KKETGAKPGSCFNCGELGHFADKCPK 370
>gb|AAP53512.1| putative polyprotein [Oryza sativa (japonica cultivar-group)]
gi|37533846|ref|NP_921225.1| putative polyprotein [Oryza
sativa (japonica cultivar-group)]
gi|13129458|gb|AAK13116.1| polyprotein [Oryza sativa]
Length = 2162
Score = 114 bits (285), Expect = 4e-24
Identities = 88/326 (26%), Positives = 138/326 (41%), Gaps = 37/326 (11%)
Query: 28 EMVATLVQAMTVQTNDNAQRRAAEDARELHLRQREASLDQNRGLNNFIRQNPPKFTGGTD 87
+M+A ++Q M Q + +R + A + H Q+ L F+R PP F+ T+
Sbjct: 646 QMMAAMMQQMQ-QQHQQMHQRMMQHAEQQH--QQFGPPPPQSKLPEFLRVRPPTFSSTTN 702
Query: 88 PDEADLWIQEIEKIFEVLQTSEGAKVGLATYLLLGDAEYWWRGARGMMEANHVEVNWNSF 147
P EA+ W+ IEK +LQ ++ KV AT+ L G A WW EV W F
Sbjct: 703 PMEANDWLHAIEKKLNLLQCNDQEKVAFATHQLQGPASAWWDNHMATRPPG-TEVTWVEF 761
Query: 148 RAAFLEKYFPDSARDERESQFLTLRQGSMTIPEYAAKLESLAKHFRFFRDQVDEPYMCKR 207
+F + PD +++ +F L QG+ T+ EY + LA++ D + ++
Sbjct: 762 CRSFRKAQVPDGVMAQKKREFRALHQGNRTVTEYLHEFNRLARYAP--EDVRTDAEKQEK 819
Query: 208 FVRGLRADIEDSVRPLGIMRFQALVEKATEVELMKNRRMDR------------------- 248
F+ GL ++ + + F+ LV+KA E +N +MDR
Sbjct: 820 FMAGLDDELTNQLISGDYADFEWLVDKAIRQEDQRN-KMDRKRKAAQFRAPQGSHQRPRF 878
Query: 249 --AGTGGPMR---------TSSRSYQGKGKLQRKKPYQRPTGEGFTPGLYRPTIAAAGGA 297
GGP SS +QG Q Q G P + A
Sbjct: 879 TPGQQGGPTTMIVRQHRPFNSSNFHQGSSGSQNHHGGQPNRGAAPRPPMAPAQSGPPAQA 938
Query: 298 GSQAGSREITCFKCGEIGHYSTKCPK 323
+ G++ +CF CGE+GH++ KCPK
Sbjct: 939 KKETGAKPGSCFNCGELGHFADKCPK 964
>emb|CAD40170.2| OSJNBa0061A09.9 [Oryza sativa (japonica cultivar-group)]
gi|50921869|ref|XP_471295.1| OSJNBa0061A09.9 [Oryza
sativa (japonica cultivar-group)]
Length = 1653
Score = 114 bits (284), Expect = 5e-24
Identities = 86/326 (26%), Positives = 139/326 (42%), Gaps = 37/326 (11%)
Query: 28 EMVATLVQAMTVQTNDNAQRRAAEDARELHLRQREASLDQNRGLNNFIRQNPPKFTGGTD 87
+M+A ++Q M Q + +R + A + H Q+ L F+R PP F+ T+
Sbjct: 250 QMMAAMMQQMQ-QQHQQMHQRMMQYAEQQH--QQFGPPPPQSKLPEFLRVRPPTFSSTTN 306
Query: 88 PDEADLWIQEIEKIFEVLQTSEGAKVGLATYLLLGDAEYWWRGARGMMEANHVEVNWNSF 147
P EA+ W+ IEK +LQ ++ KV AT+ L G A WW EV W F
Sbjct: 307 PMEANDWLHAIEKKLNLLQCNDQEKVAFATHQLQGPASAWWDNHMATRPPG-TEVTWAEF 365
Query: 148 RAAFLEKYFPDSARDERESQFLTLRQGSMTIPEYAAKLESLAKHFRFFRDQVDEPYMCKR 207
+F + PD +++ +F L QG+ T+ EY + LA++ D + ++
Sbjct: 366 CRSFRKAQVPDGVVAQKKREFRALHQGNRTVTEYLHEFNRLARYAP--EDVRTDAEKQEK 423
Query: 208 FVRGLRADIEDSVRPLGIMRFQALVEKATEVELMKNRRMDRAGTGGPMRTSSRS------ 261
F+ GL ++ + + F+ LV+KA E +N+ MDR R++ S
Sbjct: 424 FMAGLDDELTNQLISGDYADFERLVDKAIRQEDQRNK-MDRKRKAAQFRSNQGSQHRPRF 482
Query: 262 ------------------------YQGKGKLQRKKPYQRPTGEGFTPGLYRPTIAAAGGA 297
+QG Q + Q G P + A A
Sbjct: 483 TPGQQGGPTTMIVRQHRPFHSGNFHQGASGSQNHQGGQPNRGAAPRPPMAPAQSAQPAQA 542
Query: 298 GSQAGSREITCFKCGEIGHYSTKCPK 323
+ G++ +CF CGE+GH++ KCPK
Sbjct: 543 KKETGAKPGSCFNCGELGHFADKCPK 568
>ref|XP_475569.1| putative polyprotein [Oryza sativa (japonica cultivar-group)]
Length = 1730
Score = 114 bits (284), Expect = 5e-24
Identities = 88/326 (26%), Positives = 137/326 (41%), Gaps = 37/326 (11%)
Query: 28 EMVATLVQAMTVQTNDNAQRRAAEDARELHLRQREASLDQNRGLNNFIRQNPPKFTGGTD 87
+M+A ++Q M Q + +R + A + H Q+ L F+R PP F+ T+
Sbjct: 316 QMMAAMMQQMQ-QQHQQMYQRMLQHAEQQH--QQFGPPPPQSKLPEFLRVRPPTFSSTTN 372
Query: 88 PDEADLWIQEIEKIFEVLQTSEGAKVGLATYLLLGDAEYWWRGARGMMEANHVEVNWNSF 147
P EA+ W+ IEK +LQ ++ KV T+ L G A WW EV W F
Sbjct: 373 PMEANDWLHAIEKKLNLLQCNDQEKVAFTTHQLQGPASAWWDNHMATRPPG-TEVTWAEF 431
Query: 148 RAAFLEKYFPDSARDERESQFLTLRQGSMTIPEYAAKLESLAKHFRFFRDQVDEPYMCKR 207
+F + PD +++ +F L QG+ T+ EY + LA++ D + +R
Sbjct: 432 CRSFRKAQVPDGVVAQKKREFRALHQGNRTVTEYLHEFNRLARYAP--EDVRTDAEKQER 489
Query: 208 FVRGLRADIEDSVRPLGIMRFQALVEKATEVELMKNRRMDR------------------- 248
F+ GL ++ + + F+ LV+KA E +N +MDR
Sbjct: 490 FMAGLDDELTNQLISGDYADFERLVDKAIRQEDQRN-KMDRKRKAAQFRAPQGSHQRPRF 548
Query: 249 --AGTGGPMRTSSRSY---------QGKGKLQRKKPYQRPTGEGFTPGLYRPTIAAAGGA 297
GGP R Y QG Q Q G P + + A
Sbjct: 549 APGQQGGPTTMIVRQYRPFHPSNFPQGASGSQNHHGGQPNRGAAPRPPMAPAQSGPSAQA 608
Query: 298 GSQAGSREITCFKCGEIGHYSTKCPK 323
+ G++ +CF CGE+GH++ KCPK
Sbjct: 609 RKETGAKPGSCFNCGELGHFADKCPK 634
>gb|AAS90689.2| putative polyprotein [Oryza sativa (japonica cultivar-group)]
Length = 1708
Score = 114 bits (284), Expect = 5e-24
Identities = 88/326 (26%), Positives = 137/326 (41%), Gaps = 37/326 (11%)
Query: 28 EMVATLVQAMTVQTNDNAQRRAAEDARELHLRQREASLDQNRGLNNFIRQNPPKFTGGTD 87
+M+A ++Q M Q + +R + A + H Q+ L F+R PP F+ T+
Sbjct: 294 QMMAAMMQQMQ-QQHQQMYQRMLQHAEQQH--QQFGPPPPQSKLPEFLRVRPPTFSSTTN 350
Query: 88 PDEADLWIQEIEKIFEVLQTSEGAKVGLATYLLLGDAEYWWRGARGMMEANHVEVNWNSF 147
P EA+ W+ IEK +LQ ++ KV T+ L G A WW EV W F
Sbjct: 351 PMEANDWLHAIEKKLNLLQCNDQEKVAFTTHQLQGPASAWWDNHMATRPPG-TEVTWAEF 409
Query: 148 RAAFLEKYFPDSARDERESQFLTLRQGSMTIPEYAAKLESLAKHFRFFRDQVDEPYMCKR 207
+F + PD +++ +F L QG+ T+ EY + LA++ D + +R
Sbjct: 410 CRSFRKAQVPDGVVAQKKREFRALHQGNRTVTEYLHEFNRLARYAP--EDVRTDAEKQER 467
Query: 208 FVRGLRADIEDSVRPLGIMRFQALVEKATEVELMKNRRMDR------------------- 248
F+ GL ++ + + F+ LV+KA E +N +MDR
Sbjct: 468 FMAGLDDELTNQLISGDYADFERLVDKAIRQEDQRN-KMDRKRKAAQFRAPQGSHQRPRF 526
Query: 249 --AGTGGPMRTSSRSY---------QGKGKLQRKKPYQRPTGEGFTPGLYRPTIAAAGGA 297
GGP R Y QG Q Q G P + + A
Sbjct: 527 APGQQGGPTTMIVRQYRPFHPSNFPQGASGSQNHHGGQPNRGAAPRPPMAPAQSGPSAQA 586
Query: 298 GSQAGSREITCFKCGEIGHYSTKCPK 323
+ G++ +CF CGE+GH++ KCPK
Sbjct: 587 RKETGAKPGSCFNCGELGHFADKCPK 612
>emb|CAD41450.1| OSJNBa0019D11.8 [Oryza sativa (japonica cultivar-group)]
gi|50926528|ref|XP_473211.1| OSJNBa0019D11.8 [Oryza
sativa (japonica cultivar-group)]
Length = 1470
Score = 113 bits (283), Expect = 7e-24
Identities = 84/290 (28%), Positives = 124/290 (41%), Gaps = 31/290 (10%)
Query: 53 ARELHLRQREASLDQNRG---LNNFIRQNPPKFTGGTDPDEADLWIQEIEKIFEVLQTSE 109
A + L Q AS NRG F+R PP F +P EA+ W++ IEK +++ E
Sbjct: 27 ATQTQLLQAIASNQGNRGGSSFGEFMRTKPPTFATADEPMEAEDWLRIIEKKLTLVRVRE 86
Query: 110 GAKVGLATYLLLGDAEYWWRGARGMMEANHVEVNWNSFRAAFLEKYFPDSARDERESQFL 169
KV A L G A WW + E E W F AF E + P + ++++F
Sbjct: 87 ADKVIFAVNQLEGPAGDWWDTYKEAREDGAGEPTWEEFTVAFRENFVPAAVMRMKKNEFR 146
Query: 170 TLRQGSMTIPEYAAKLESLAKHFRFFRDQVDEPYMCKRFVRGLRADIEDSVRPLGIMRFQ 229
LRQG+ T+ EY K LA++ D DE +F+ GL ++ + FQ
Sbjct: 147 RLRQGNTTVQEYLNKFTQLARY--AIGDLADEEEKIDKFIEGLNDELRGPMIGQDHESFQ 204
Query: 230 ALVEKATEVE----LMKNRRMDRAGTGGPMRTSSRSYQGKGKLQRKKP------------ 273
+L+ K +E +++ R R +T + +G K P
Sbjct: 205 SLINKVVRLENDQRTVEHNRKRRLAMSRLPQTVPQRLKGATPSGWKPPVMVTNRPAALSN 264
Query: 274 YQRPTG-EGFTPGLYRPTIAAAGGAGSQAGSREITCFKCGEIGHYSTKCP 322
+ RP + TP PT+AA G + + CF CGE GHY+ CP
Sbjct: 265 FNRPVALQNRTP---TPTLAAPG------AKKNVDCFNCGEYGHYANNCP 305
>emb|CAC44108.1| putative gag polyprotein [Cicer arietinum]
Length = 116
Score = 113 bits (283), Expect = 7e-24
Identities = 61/103 (59%), Positives = 74/103 (71%), Gaps = 7/103 (6%)
Query: 178 IPEYAAKLESLAKHFRFFRDQVDEPYMCKRFVRGLRADIEDSVRPLGIMRFQALVEKATE 237
+ EYAAK ESL++HFRFFR++ EP+MC RF GL+ +I+DSV PLGI RFQALVEK E
Sbjct: 1 VGEYAAKFESLSRHFRFFREKDYEPFMCHRFQDGLKYEIQDSVLPLGIQRFQALVEKCRE 60
Query: 238 VELMKNRRMDRAG---TGGPMRTSSRSYQGKGKLQRKKPYQRP 277
VE MKN+R R G +GGP R +YQ +GK Q KPY RP
Sbjct: 61 VEDMKNKRASRVGNFNSGGPSRA---NYQNRGK-QVAKPYNRP 99
>gb|AAX95203.1| retrotransposon protein, putative, Ty3-gypsy sub-class [Oryza
sativa (japonica cultivar-group)]
Length = 1566
Score = 113 bits (282), Expect = 9e-24
Identities = 85/325 (26%), Positives = 136/325 (41%), Gaps = 35/325 (10%)
Query: 28 EMVATLVQAMTVQTNDNAQRRAAEDARELHLRQREASLDQNRGLNNFIRQNPPKFTGGTD 87
+M+A ++Q M Q + +R + A + H Q+ L F+R PP F+ T+
Sbjct: 359 QMMAAMMQQMQ-QQHQQMHQRMMQHAEQQH--QQFGPPPPQSKLPEFLRVRPPTFSSTTN 415
Query: 88 PDEADLWIQEIEKIFEVLQTSEGAKVGLATYLLLGDAEYWWRGARGMMEANHVEVNWNSF 147
P EA+ W+ IEK +LQ ++ KV AT+ L G A WW EV W F
Sbjct: 416 PMEANDWLHAIEKKLNLLQCNDQEKVAFATHQLQGPASAWWDNHMATRPPG-TEVTWAEF 474
Query: 148 RAAFLEKYFPDSARDERESQFLTLRQGSMTIPEYAAKLESLAKHFRFFRDQVDEPYMCKR 207
+F + PD +++ +F L QG+ T+ EY + LA++ D + ++
Sbjct: 475 CRSFRKAQVPDGVVAQKKREFRALHQGNRTVTEYLHEFNRLARYAP--EDVRTDAEKQEK 532
Query: 208 FVRGLRADIEDSVRPLGIMRFQALVEKATEVELMKNR--------------------RMD 247
F+ GL ++ + + F+ LV+KA E +N+ R+
Sbjct: 533 FMAGLDDELTNQLISGDYADFERLVDKAIRQEDQRNKMDRKRKAAQFRAPQGSHQRPRLT 592
Query: 248 RAGTGGPMR---------TSSRSYQGKGKLQRKKPYQRPTGEGFTPGLYRPTIAAAGGAG 298
GGP S +QG Q Q G P + A
Sbjct: 593 PGQQGGPTTMIVRQHRPFNPSNFHQGTSGSQNHHGSQPNRGTAPRPPMAPAQSGQPAQAK 652
Query: 299 SQAGSREITCFKCGEIGHYSTKCPK 323
+ G++ +CF CGE+GH++ KCPK
Sbjct: 653 KETGAKPGSCFNCGELGHFADKCPK 677
>gb|AAX95200.1| retrotransposon protein, putative, Ty3-gypsy sub-class [Oryza
sativa (japonica cultivar-group)]
Length = 844
Score = 113 bits (282), Expect = 9e-24
Identities = 85/325 (26%), Positives = 136/325 (41%), Gaps = 35/325 (10%)
Query: 28 EMVATLVQAMTVQTNDNAQRRAAEDARELHLRQREASLDQNRGLNNFIRQNPPKFTGGTD 87
+M+A ++Q M Q + +R + A + H Q+ L F+R PP F+ T+
Sbjct: 333 QMMAAMMQQMQ-QQHQQMHQRMMQHAEQQH--QQFGPPPPQSKLPEFLRVRPPTFSSTTN 389
Query: 88 PDEADLWIQEIEKIFEVLQTSEGAKVGLATYLLLGDAEYWWRGARGMMEANHVEVNWNSF 147
P EA+ W+ IEK +LQ ++ KV AT+ L G A WW EV W F
Sbjct: 390 PMEANDWLHAIEKKLNLLQCNDQEKVAFATHQLQGPASAWWDNHMATRPPG-TEVTWAEF 448
Query: 148 RAAFLEKYFPDSARDERESQFLTLRQGSMTIPEYAAKLESLAKHFRFFRDQVDEPYMCKR 207
+F + PD +++ +F L QG+ T+ EY + LA++ D + ++
Sbjct: 449 CRSFRKAQVPDGVVAQKKREFRALHQGNRTVTEYLHEFNRLARYAP--EDVRTDAEKQEK 506
Query: 208 FVRGLRADIEDSVRPLGIMRFQALVEKATEVELMKNR--------------------RMD 247
F+ GL ++ + + F+ LV+KA E +N+ R+
Sbjct: 507 FMAGLDDELTNQLISGDYADFERLVDKAIRQEDQRNKMDRKRKAAQFRAPQGSHQRPRLT 566
Query: 248 RAGTGGPMR---------TSSRSYQGKGKLQRKKPYQRPTGEGFTPGLYRPTIAAAGGAG 298
GGP S +QG Q Q G P + A
Sbjct: 567 PGQQGGPTTMIVRQHRPFNPSNFHQGTSGSQNHHGSQPNRGTAPRPPMAPAQSGQPAQAK 626
Query: 299 SQAGSREITCFKCGEIGHYSTKCPK 323
+ G++ +CF CGE+GH++ KCPK
Sbjct: 627 KETGAKPGSCFNCGELGHFADKCPK 651
Database: nr
Posted date: Jul 5, 2005 12:34 AM
Number of letters in database: 863,360,394
Number of sequences in database: 2,540,612
Lambda K H
0.321 0.136 0.411
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 551,411,945
Number of Sequences: 2540612
Number of extensions: 23711951
Number of successful extensions: 66677
Number of sequences better than 10.0: 1017
Number of HSP's better than 10.0 without gapping: 668
Number of HSP's successfully gapped in prelim test: 350
Number of HSP's that attempted gapping in prelim test: 64570
Number of HSP's gapped (non-prelim): 1600
length of query: 325
length of database: 863,360,394
effective HSP length: 128
effective length of query: 197
effective length of database: 538,162,058
effective search space: 106017925426
effective search space used: 106017925426
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 75 (33.5 bits)
Lotus: description of TM0252c.1