BLAST2 result
BLASTP 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TM0252b.2
(515 letters)
Database: nr
2,540,612 sequences; 863,360,394 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAL39067.1| single-stranded DNA binding protein precursor [So... 54 9e-06
gb|AAX52651.1| CG3151-PG, isoform G [Drosophila melanogaster] gi... 53 3e-05
gb|AAN10401.2| CG3151-PD, isoform D [Drosophila melanogaster] gi... 53 3e-05
ref|XP_470714.1| putative ribonucleoprotein [Oryza sativa] gi|18... 52 3e-05
gb|AAB25519.2| RRM9 [Drosophila melanogaster] 52 3e-05
gb|AAF51178.2| CG3151-PC, isoform C [Drosophila melanogaster] gi... 52 3e-05
gb|AAF51179.3| CG3151-PA, isoform A [Drosophila melanogaster] gi... 52 3e-05
ref|XP_638262.1| hypothetical protein DDB0218709 [Dictyostelium ... 52 3e-05
ref|XP_394166.2| PREDICTED: similar to ENSANGP00000005999 [Apis ... 52 3e-05
ref|NP_967322.1| RNA-binding protein [Bdellovibrio bacteriovorus... 52 4e-05
gb|AAM78058.1| AT5g61030/maf19_30 [Arabidopsis thaliana] gi|9759... 52 6e-05
ref|NP_034615.2| ELAV (embryonic lethal, abnormal vision, Drosop... 51 1e-04
ref|XP_344064.2| PREDICTED: similar to ELAV (embryonic lethal, a... 51 1e-04
sp|P70372|ELAV1_MOUSE ELAV-like protein 1 (Hu-antigen R) (HuR) (... 51 1e-04
dbj|BAC35984.1| unnamed protein product [Mus musculus] 51 1e-04
dbj|BAC28748.1| unnamed protein product [Mus musculus] 51 1e-04
gb|AAP88795.1| ELAV (embryonic lethal, abnormal vision, Drosophi... 50 1e-04
gb|AAB41913.1| HuR RNA binding protein 50 1e-04
dbj|BAE00717.1| unnamed protein product [Macaca fascicularis] 50 1e-04
ref|XP_635247.1| hypothetical protein DDB0183926 [Dictyostelium ... 50 1e-04
>gb|AAL39067.1| single-stranded DNA binding protein precursor [Solanum tuberosum]
Length = 289
Score = 54.3 bits (129), Expect = 9e-06
Identities = 32/82 (39%), Positives = 50/82 (60%), Gaps = 2/82 (2%)
Query: 46 LFVDGIAESVSYHQIRGLFAQFGRLVNVFVQRKKKLGRRFRFGFVRFTSWKVAAVAIKSL 105
++V +A SV Q+ LF++ G++V+ V + GR FGFV ++S K AI+SL
Sbjct: 206 VYVGNLAWSVDQQQLETLFSEQGKVVDAKVVYDRDSGRSRGFGFVTYSSAKEVNDAIESL 265
Query: 106 DGVRLGGASLSV--GLAKPPQK 125
DGV LGG ++ V A+PP++
Sbjct: 266 DGVDLGGRAIRVSPAEARPPRR 287
Score = 42.4 bits (98), Expect = 0.036
Identities = 33/112 (29%), Positives = 50/112 (44%), Gaps = 5/112 (4%)
Query: 17 VDVGDEAADEEDGSTPNQKCSGVSRVC---VSLFVDGIAESVSYHQIRGLFAQFGRLVNV 73
V+ GD+ DEE+G ++ S R + +FV + SV + LF + G + V
Sbjct: 71 VEAGDD--DEEEGGLSDEGASYEERNANPDLKIFVGNLPFSVDSAALAELFERAGDVEMV 128
Query: 74 FVQRKKKLGRRFRFGFVRFTSWKVAAVAIKSLDGVRLGGASLSVGLAKPPQK 125
V K GR FGFV +S + A + +G + G +L V P K
Sbjct: 129 EVIYDKLTGRSRGFGFVTMSSKEAVEAACQQFNGYEIDGRALRVNSGPAPPK 180
>gb|AAX52651.1| CG3151-PG, isoform G [Drosophila melanogaster]
gi|22945353|gb|AAN10403.1| CG3151-PF, isoform F
[Drosophila melanogaster] gi|22945352|gb|AAN10402.1|
CG3151-PE, isoform E [Drosophila melanogaster]
gi|19549692|ref|NP_599126.1| CG3151-PF, isoform F
[Drosophila melanogaster] gi|19549690|ref|NP_599125.1|
CG3151-PE, isoform E [Drosophila melanogaster]
gi|62471589|ref|NP_001014462.1| CG3151-PG, isoform G
[Drosophila melanogaster] gi|158227|gb|AAC13646.1|
RNA-binding protein gi|40714603|gb|AAR88559.1| GH26440p
[Drosophila melanogaster]
Length = 439
Score = 52.8 bits (125), Expect = 3e-05
Identities = 39/163 (23%), Positives = 77/163 (46%), Gaps = 14/163 (8%)
Query: 25 DEEDGSTPNQKCSGVSRVCVSLFVDGIAESVSYHQIRGLFAQFGRLVNVFVQRKKKLGRR 84
+ + +T N + +L V+ + +++S +IR LF FG + + + R K G+
Sbjct: 91 NNNNNATANNNNNNEPDPKTNLIVNYLPQTMSQDEIRSLFVSFGEVESCKLIRDKVTGQS 150
Query: 85 FRFGFVRFTSWKVAAVAIKSLDGVRLGGASLSVGLAKPPQKVVSRSDAKVANVCSVIKKV 144
+GFV + + A AI +L+G+RL ++ V +A+P + + ++ V+ +
Sbjct: 151 LGYGFVNYVKQEDAEKAINALNGLRLQNKTIKVSIARPSSESIKGANLYVSGL------- 203
Query: 145 DGSSGLTGKRKESVSGPF--ISSWR---DVVVGNTKGSRLVSF 182
+T ES+ P+ I + R D + G +KG + F
Sbjct: 204 --PKNMTQSDLESLFSPYGKIITSRILCDNITGLSKGVGFIRF 244
Score = 41.2 bits (95), Expect = 0.079
Identities = 25/72 (34%), Positives = 39/72 (53%)
Query: 46 LFVDGIAESVSYHQIRGLFAQFGRLVNVFVQRKKKLGRRFRFGFVRFTSWKVAAVAIKSL 105
+FV +A + + LF FG + +V V R + + FGFV T+++ A +AI+SL
Sbjct: 358 IFVYNLAPDTEENVLWQLFGPFGAVQSVKVIRDLQSNKCKGFGFVTMTNYEEAVLAIQSL 417
Query: 106 DGVRLGGASLSV 117
+G LG L V
Sbjct: 418 NGYTLGNRVLQV 429
>gb|AAN10401.2| CG3151-PD, isoform D [Drosophila melanogaster]
gi|45549052|ref|NP_476936.2| CG3151-PD, isoform D
[Drosophila melanogaster]
Length = 642
Score = 52.8 bits (125), Expect = 3e-05
Identities = 39/163 (23%), Positives = 77/163 (46%), Gaps = 14/163 (8%)
Query: 25 DEEDGSTPNQKCSGVSRVCVSLFVDGIAESVSYHQIRGLFAQFGRLVNVFVQRKKKLGRR 84
+ + +T N + +L V+ + +++S +IR LF FG + + + R K G+
Sbjct: 294 NNNNNATANNNNNNEPDPKTNLIVNYLPQTMSQDEIRSLFVSFGEVESCKLIRDKVTGQS 353
Query: 85 FRFGFVRFTSWKVAAVAIKSLDGVRLGGASLSVGLAKPPQKVVSRSDAKVANVCSVIKKV 144
+GFV + + A AI +L+G+RL ++ V +A+P + + ++ V+ +
Sbjct: 354 LGYGFVNYVKQEDAEKAINALNGLRLQNKTIKVSIARPSSESIKGANLYVSGL------- 406
Query: 145 DGSSGLTGKRKESVSGPF--ISSWR---DVVVGNTKGSRLVSF 182
+T ES+ P+ I + R D + G +KG + F
Sbjct: 407 --PKNMTQSDLESLFSPYGKIITSRILCDNITGLSKGVGFIRF 447
Score = 41.2 bits (95), Expect = 0.079
Identities = 25/72 (34%), Positives = 39/72 (53%)
Query: 46 LFVDGIAESVSYHQIRGLFAQFGRLVNVFVQRKKKLGRRFRFGFVRFTSWKVAAVAIKSL 105
+FV +A + + LF FG + +V V R + + FGFV T+++ A +AI+SL
Sbjct: 561 IFVYNLAPDTEENVLWQLFGPFGAVQSVKVIRDLQSNKCKGFGFVTMTNYEEAVLAIQSL 620
Query: 106 DGVRLGGASLSV 117
+G LG L V
Sbjct: 621 NGYTLGNRVLQV 632
>ref|XP_470714.1| putative ribonucleoprotein [Oryza sativa]
gi|18921322|gb|AAL82527.1| putative ribonucleoprotein
[Oryza sativa]
Length = 265
Score = 52.4 bits (124), Expect = 3e-05
Identities = 41/121 (33%), Positives = 58/121 (47%), Gaps = 5/121 (4%)
Query: 12 AVGDGVDVGDEAADEEDGSTPNQKCSGVSRVCVSLFVDGIAESVSYHQIRGLFAQFGRLV 71
AV + V+ ++ +EE+GS ++ S RV FV + SV Q+ GLF Q G +
Sbjct: 59 AVSEEVETEEDEEEEEEGSG-GEEFSDDLRV----FVGNLPFSVDSAQLAGLFEQAGSVE 113
Query: 72 NVFVQRKKKLGRRFRFGFVRFTSWKVAAVAIKSLDGVRLGGASLSVGLAKPPQKVVSRSD 131
V V K GR FGFV +S + A++ +G L G SL V PP + S
Sbjct: 114 MVEVIYDKLTGRSRGFGFVTMSSVEEVEAAVEQFNGYILDGRSLRVNSGPPPPREQSSQR 173
Query: 132 A 132
A
Sbjct: 174 A 174
Score = 37.4 bits (85), Expect = 1.1
Identities = 23/82 (28%), Positives = 42/82 (51%), Gaps = 2/82 (2%)
Query: 46 LFVDGIAESVSYHQIRGLFAQFGRLVNVFVQRKKKLGRRFRFGFVRFTSWKVAAVAIKSL 105
++V ++ V + LF+ G ++ V ++ GR FGFV + S + A+ +L
Sbjct: 182 VYVGNLSWGVDNAALANLFSGEGEVLEAKVIYDRESGRSRGFGFVTYGSAEEVENAVSNL 241
Query: 106 DGVRLGGASLSVGLA--KPPQK 125
DG + G + V +A KPP++
Sbjct: 242 DGADMDGRQIRVTVAESKPPRR 263
>gb|AAB25519.2| RRM9 [Drosophila melanogaster]
Length = 444
Score = 52.4 bits (124), Expect = 3e-05
Identities = 28/113 (24%), Positives = 59/113 (51%)
Query: 25 DEEDGSTPNQKCSGVSRVCVSLFVDGIAESVSYHQIRGLFAQFGRLVNVFVQRKKKLGRR 84
+ + +T N + +L V+ + +++S +IR LF FG + + + R K G+
Sbjct: 91 NNNNNATANNNNNNEPDPKTNLIVNYLPQTMSQDEIRSLFVSFGEVESCKLIRDKVTGQS 150
Query: 85 FRFGFVRFTSWKVAAVAIKSLDGVRLGGASLSVGLAKPPQKVVSRSDAKVANV 137
+GFV + + A AI +L+G+RL ++ V +A+P + + ++ V+ +
Sbjct: 151 LGYGFVNYVKQEDAEKAINALNGLRLQNKTIKVSIARPSSESIKGANLYVSGL 203
Score = 41.2 bits (95), Expect = 0.079
Identities = 25/72 (34%), Positives = 39/72 (53%)
Query: 46 LFVDGIAESVSYHQIRGLFAQFGRLVNVFVQRKKKLGRRFRFGFVRFTSWKVAAVAIKSL 105
+FV +A + + LF FG + +V V R + + FGFV T+++ A +AI+SL
Sbjct: 363 IFVYNLAPDTEENVLWQLFGPFGAVQSVKVIRDLQSNKCKGFGFVTMTNYEEAVLAIQSL 422
Query: 106 DGVRLGGASLSV 117
+G LG L V
Sbjct: 423 NGYTLGNRVLQV 434
>gb|AAF51178.2| CG3151-PC, isoform C [Drosophila melanogaster]
gi|22945349|gb|AAF51177.2| CG3151-PB, isoform B
[Drosophila melanogaster] gi|19549694|ref|NP_599127.1|
CG3151-PC, isoform C [Drosophila melanogaster]
gi|19549688|ref|NP_599124.1| CG3151-PB, isoform B
[Drosophila melanogaster] gi|158226|gb|AAC13645.1|
RNA-binding protein
Length = 444
Score = 52.4 bits (124), Expect = 3e-05
Identities = 28/113 (24%), Positives = 59/113 (51%)
Query: 25 DEEDGSTPNQKCSGVSRVCVSLFVDGIAESVSYHQIRGLFAQFGRLVNVFVQRKKKLGRR 84
+ + +T N + +L V+ + +++S +IR LF FG + + + R K G+
Sbjct: 91 NNNNNATANNNNNNEPDPKTNLIVNYLPQTMSQDEIRSLFVSFGEVESCKLIRDKVTGQS 150
Query: 85 FRFGFVRFTSWKVAAVAIKSLDGVRLGGASLSVGLAKPPQKVVSRSDAKVANV 137
+GFV + + A AI +L+G+RL ++ V +A+P + + ++ V+ +
Sbjct: 151 LGYGFVNYVKQEDAEKAINALNGLRLQNKTIKVSIARPSSESIKGANLYVSGL 203
Score = 41.2 bits (95), Expect = 0.079
Identities = 25/72 (34%), Positives = 39/72 (53%)
Query: 46 LFVDGIAESVSYHQIRGLFAQFGRLVNVFVQRKKKLGRRFRFGFVRFTSWKVAAVAIKSL 105
+FV +A + + LF FG + +V V R + + FGFV T+++ A +AI+SL
Sbjct: 363 IFVYNLAPDTEENVLWQLFGPFGAVQSVKVIRDLQSNKCKGFGFVTMTNYEEAVLAIQSL 422
Query: 106 DGVRLGGASLSV 117
+G LG L V
Sbjct: 423 NGYTLGNRVLQV 434
>gb|AAF51179.3| CG3151-PA, isoform A [Drosophila melanogaster]
gi|45549053|ref|NP_476937.2| CG3151-PA, isoform A
[Drosophila melanogaster]
Length = 647
Score = 52.4 bits (124), Expect = 3e-05
Identities = 28/113 (24%), Positives = 59/113 (51%)
Query: 25 DEEDGSTPNQKCSGVSRVCVSLFVDGIAESVSYHQIRGLFAQFGRLVNVFVQRKKKLGRR 84
+ + +T N + +L V+ + +++S +IR LF FG + + + R K G+
Sbjct: 294 NNNNNATANNNNNNEPDPKTNLIVNYLPQTMSQDEIRSLFVSFGEVESCKLIRDKVTGQS 353
Query: 85 FRFGFVRFTSWKVAAVAIKSLDGVRLGGASLSVGLAKPPQKVVSRSDAKVANV 137
+GFV + + A AI +L+G+RL ++ V +A+P + + ++ V+ +
Sbjct: 354 LGYGFVNYVKQEDAEKAINALNGLRLQNKTIKVSIARPSSESIKGANLYVSGL 406
Score = 41.2 bits (95), Expect = 0.079
Identities = 25/72 (34%), Positives = 39/72 (53%)
Query: 46 LFVDGIAESVSYHQIRGLFAQFGRLVNVFVQRKKKLGRRFRFGFVRFTSWKVAAVAIKSL 105
+FV +A + + LF FG + +V V R + + FGFV T+++ A +AI+SL
Sbjct: 566 IFVYNLAPDTEENVLWQLFGPFGAVQSVKVIRDLQSNKCKGFGFVTMTNYEEAVLAIQSL 625
Query: 106 DGVRLGGASLSV 117
+G LG L V
Sbjct: 626 NGYTLGNRVLQV 637
>ref|XP_638262.1| hypothetical protein DDB0218709 [Dictyostelium discoideum]
gi|60466725|gb|EAL64776.1| hypothetical protein
DDB0218709 [Dictyostelium discoideum]
Length = 1035
Score = 52.4 bits (124), Expect = 3e-05
Identities = 26/73 (35%), Positives = 44/73 (59%)
Query: 46 LFVDGIAESVSYHQIRGLFAQFGRLVNVFVQRKKKLGRRFRFGFVRFTSWKVAAVAIKSL 105
+++ I +V+ Q+R +F+QFGR+++ F+ + G+ FGFV F K A AI ++
Sbjct: 771 IYIGSINWNVTEDQVRSIFSQFGRVISCFLMQNADTGKHKGFGFVDFELKKSADDAIATM 830
Query: 106 DGVRLGGASLSVG 118
+G L G S+ VG
Sbjct: 831 NGFELLGRSIKVG 843
>ref|XP_394166.2| PREDICTED: similar to ENSANGP00000005999 [Apis mellifera]
Length = 495
Score = 52.4 bits (124), Expect = 3e-05
Identities = 42/172 (24%), Positives = 82/172 (47%), Gaps = 16/172 (9%)
Query: 21 DEAADEEDGSTPNQKCSGVSRVCVSLFVDGIAESVSYHQIRGLFAQFGRLVNVFVQRKKK 80
D + GST Q S+ +L V+ + +S++ +IR LF+ G + + + R K
Sbjct: 6 DTVVQQNGGSTLGQASQEESKT--NLIVNYLPQSMTQDEIRSLFSSIGEVESCKLIRDKL 63
Query: 81 LGRRFRFGFVRFTSWKVAAVAIKSLDGVRLGGASLSVGLAKPPQKVVSRSDAKVANVCSV 140
G+ +GFV + + A AI +L+G+RL ++ V A+P + + ++ V+ +
Sbjct: 64 TGQSLGYGFVNYHRPEDAEKAINTLNGLRLQNKTIKVSYARPSSEAIKGANLYVSGL--- 120
Query: 141 IKKVDGSSGLTGKRKESVSGPF--ISSWR---DVVVGNTKGSRLVSFAEDVK 187
+T + E++ P+ I + R D + G +KG + F + V+
Sbjct: 121 ------PKNMTQQDLENLFSPYGRIITSRILCDNITGLSKGVGFIRFDQRVE 166
Score = 42.0 bits (97), Expect = 0.047
Identities = 26/72 (36%), Positives = 38/72 (52%)
Query: 46 LFVDGIAESVSYHQIRGLFAQFGRLVNVFVQRKKKLGRRFRFGFVRFTSWKVAAVAIKSL 105
+FV +A + + LF FG + +V V R + + FGFV T++ A VAI+SL
Sbjct: 253 IFVYNLAPETEENVLWQLFGPFGAVQSVKVIRDLQTNKCKGFGFVTMTNYDEAVVAIQSL 312
Query: 106 DGVRLGGASLSV 117
+G LG L V
Sbjct: 313 NGYTLGNRVLQV 324
Score = 35.4 bits (80), Expect = 4.4
Identities = 22/81 (27%), Positives = 41/81 (50%), Gaps = 2/81 (2%)
Query: 45 SLFVDGIAESVSYHQIRGLFAQFGRLVNVFVQRKKKLGRRFRFGFVRFTSWKVAAVAIKS 104
+L+V G+ ++++ + LF+ +GR++ + G GF+RF A AI+
Sbjct: 114 NLYVSGLPKNMTQQDLENLFSPYGRIITSRILCDNITGLSKGVGFIRFDQRVEAERAIQE 173
Query: 105 LDGVRLGGAS--LSVGLAKPP 123
L+G G+S ++V A P
Sbjct: 174 LNGTIPKGSSEPITVKFANNP 194
>ref|NP_967322.1| RNA-binding protein [Bdellovibrio bacteriovorus HD100]
gi|39574472|emb|CAE77976.1| RNA-binding protein
[Bdellovibrio bacteriovorus HD100]
Length = 104
Score = 52.0 bits (123), Expect = 4e-05
Identities = 27/79 (34%), Positives = 45/79 (56%)
Query: 46 LFVDGIAESVSYHQIRGLFAQFGRLVNVFVQRKKKLGRRFRFGFVRFTSWKVAAVAIKSL 105
++V ++ +V Q+ GLFA FG + +V + + GR F FV +S A AI L
Sbjct: 5 IYVGNLSYNVDQDQLGGLFADFGTVDSVNIITDRDTGRSKGFAFVEMSSDSEATAAIDKL 64
Query: 106 DGVRLGGASLSVGLAKPPQ 124
+G+ LGG ++++ AKP +
Sbjct: 65 NGMDLGGRAMNISEAKPQE 83
>gb|AAM78058.1| AT5g61030/maf19_30 [Arabidopsis thaliana]
gi|9759450|dbj|BAB10366.1| unnamed protein product
[Arabidopsis thaliana] gi|15239505|ref|NP_200911.1|
RNA-binding protein, putative [Arabidopsis thaliana]
gi|16974556|gb|AAL31194.1| AT5g61030/maf19_30
[Arabidopsis thaliana]
Length = 309
Score = 51.6 bits (122), Expect = 6e-05
Identities = 29/75 (38%), Positives = 44/75 (58%)
Query: 46 LFVDGIAESVSYHQIRGLFAQFGRLVNVFVQRKKKLGRRFRFGFVRFTSWKVAAVAIKSL 105
LF+ G+A S+ +R F ++G +V+ V ++ GR FGFV FTS + A+ AI++L
Sbjct: 42 LFIGGMAYSMDEDSLREAFTKYGEVVDTRVILDRETGRSRGFGFVTFTSSEAASSAIQAL 101
Query: 106 DGVRLGGASLSVGLA 120
DG L G + V A
Sbjct: 102 DGRDLHGRVVKVNYA 116
>ref|NP_034615.2| ELAV (embryonic lethal, abnormal vision, Drosophila)-like 1 (Hu
antigen R) [Mus musculus] gi|16740619|gb|AAH16194.1|
ELAV (embryonic lethal, abnormal vision,
Drosophila)-like 1 (Hu antigen R) [Mus musculus]
gi|26348505|dbj|BAC37892.1| unnamed protein product [Mus
musculus]
Length = 326
Score = 50.8 bits (120), Expect = 1e-04
Identities = 25/101 (24%), Positives = 56/101 (54%)
Query: 45 SLFVDGIAESVSYHQIRGLFAQFGRLVNVFVQRKKKLGRRFRFGFVRFTSWKVAAVAIKS 104
+L V+ + ++++ ++R LF+ G + + + R K G +GFV + + K A AI +
Sbjct: 21 NLIVNYLPQNMTQEELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAIST 80
Query: 105 LDGVRLGGASLSVGLAKPPQKVVSRSDAKVANVCSVIKKVD 145
L+G+RL ++ V A+P +V+ ++ ++ + + + D
Sbjct: 81 LNGLRLQSKTIKVSYARPSSEVIKDANLYISGLPRTMTQKD 121
Score = 43.1 bits (100), Expect = 0.021
Identities = 25/72 (34%), Positives = 38/72 (52%)
Query: 46 LFVDGIAESVSYHQIRGLFAQFGRLVNVFVQRKKKLGRRFRFGFVRFTSWKVAAVAIKSL 105
+F+ + + + +F FG + NV V R + FGFV T+++ AA+AI SL
Sbjct: 246 IFIYNLGQDADEGILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYEEAAMAIASL 305
Query: 106 DGVRLGGASLSV 117
+G RLG L V
Sbjct: 306 NGYRLGDKILQV 317
Score = 38.1 bits (87), Expect = 0.67
Identities = 22/83 (26%), Positives = 43/83 (51%), Gaps = 2/83 (2%)
Query: 45 SLFVDGIAESVSYHQIRGLFAQFGRLVNVFVQRKKKLGRRFRFGFVRFTSWKVAAVAIKS 104
+L++ G+ +++ + +F++FGR++N V + G F+RF A AI S
Sbjct: 107 NLYISGLPRTMTQKDVEDMFSRFGRIINSRVLVDQTTGLSRGVAFIRFDKRSEAEEAITS 166
Query: 105 LDGVRLGGAS--LSVGLAKPPQK 125
+G + G+S ++V A P +
Sbjct: 167 FNGHKPPGSSEPITVKFAANPNQ 189
>ref|XP_344064.2| PREDICTED: similar to ELAV (embryonic lethal, abnormal vision,
Drosophila)-like 1 (Hu antigen R) [Rattus norvegicus]
Length = 448
Score = 50.8 bits (120), Expect = 1e-04
Identities = 25/101 (24%), Positives = 56/101 (54%)
Query: 45 SLFVDGIAESVSYHQIRGLFAQFGRLVNVFVQRKKKLGRRFRFGFVRFTSWKVAAVAIKS 104
+L V+ + ++++ ++R LF+ G + + + R K G +GFV + + K A AI +
Sbjct: 143 NLIVNYLPQNMTQEELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAIST 202
Query: 105 LDGVRLGGASLSVGLAKPPQKVVSRSDAKVANVCSVIKKVD 145
L+G+RL ++ V A+P +V+ ++ ++ + + + D
Sbjct: 203 LNGLRLQSKTIKVSYARPSSEVIKDANLYISGLPRTMTQKD 243
Score = 43.1 bits (100), Expect = 0.021
Identities = 25/72 (34%), Positives = 38/72 (52%)
Query: 46 LFVDGIAESVSYHQIRGLFAQFGRLVNVFVQRKKKLGRRFRFGFVRFTSWKVAAVAIKSL 105
+F+ + + + +F FG + NV V R + FGFV T+++ AA+AI SL
Sbjct: 368 IFIYNLGQDADEGILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYEEAAMAIASL 427
Query: 106 DGVRLGGASLSV 117
+G RLG L V
Sbjct: 428 NGYRLGDKILQV 439
Score = 38.1 bits (87), Expect = 0.67
Identities = 22/83 (26%), Positives = 43/83 (51%), Gaps = 2/83 (2%)
Query: 45 SLFVDGIAESVSYHQIRGLFAQFGRLVNVFVQRKKKLGRRFRFGFVRFTSWKVAAVAIKS 104
+L++ G+ +++ + +F++FGR++N V + G F+RF A AI S
Sbjct: 229 NLYISGLPRTMTQKDVEDMFSRFGRIINSRVLVDQTTGLSRGVAFIRFDKRSEAEEAITS 288
Query: 105 LDGVRLGGAS--LSVGLAKPPQK 125
+G + G+S ++V A P +
Sbjct: 289 FNGHKPPGSSEPITVKFAANPNQ 311
>sp|P70372|ELAV1_MOUSE ELAV-like protein 1 (Hu-antigen R) (HuR) (Elav-like generic
protein) (MelG) gi|1655901|gb|AAB17967.1| elav G homolog
Length = 326
Score = 50.8 bits (120), Expect = 1e-04
Identities = 25/101 (24%), Positives = 56/101 (54%)
Query: 45 SLFVDGIAESVSYHQIRGLFAQFGRLVNVFVQRKKKLGRRFRFGFVRFTSWKVAAVAIKS 104
+L V+ + ++++ ++R LF+ G + + + R K G +GFV + + K A AI +
Sbjct: 21 NLIVNYLPQNMTQEELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAIST 80
Query: 105 LDGVRLGGASLSVGLAKPPQKVVSRSDAKVANVCSVIKKVD 145
L+G+RL ++ V A+P +V+ ++ ++ + + + D
Sbjct: 81 LNGLRLQSKTIKVSYARPSSEVIKDANLYISGLPRTMTQKD 121
Score = 42.0 bits (97), Expect = 0.047
Identities = 24/72 (33%), Positives = 38/72 (52%)
Query: 46 LFVDGIAESVSYHQIRGLFAQFGRLVNVFVQRKKKLGRRFRFGFVRFTSWKVAAVAIKSL 105
+F+ + + + +F FG + NV V R + FGFV T+++ +A+AI SL
Sbjct: 246 IFIYNLGQDADEGILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYEESAMAIASL 305
Query: 106 DGVRLGGASLSV 117
+G RLG L V
Sbjct: 306 NGYRLGDKILQV 317
Score = 36.6 bits (83), Expect = 2.0
Identities = 22/83 (26%), Positives = 42/83 (50%), Gaps = 2/83 (2%)
Query: 45 SLFVDGIAESVSYHQIRGLFAQFGRLVNVFVQRKKKLGRRFRFGFVRFTSWKVAAVAIKS 104
+L++ G+ +++ + +F++FGR++N V + G F+RF A AI S
Sbjct: 107 NLYISGLPRTMTQKDVEDMFSRFGRIINSRVLVDQTTGLSRGVAFIRFDKRSEAEEAITS 166
Query: 105 LDGVRLGGAS--LSVGLAKPPQK 125
G + G+S ++V A P +
Sbjct: 167 FIGHKPPGSSEPITVKFAANPNQ 189
>dbj|BAC35984.1| unnamed protein product [Mus musculus]
Length = 326
Score = 50.8 bits (120), Expect = 1e-04
Identities = 25/101 (24%), Positives = 56/101 (54%)
Query: 45 SLFVDGIAESVSYHQIRGLFAQFGRLVNVFVQRKKKLGRRFRFGFVRFTSWKVAAVAIKS 104
+L V+ + ++++ ++R LF+ G + + + R K G +GFV + + K A AI +
Sbjct: 21 NLIVNYLPQNMTQEELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAIST 80
Query: 105 LDGVRLGGASLSVGLAKPPQKVVSRSDAKVANVCSVIKKVD 145
L+G+RL ++ V A+P +V+ ++ ++ + + + D
Sbjct: 81 LNGLRLQSKTIKVSYARPSSEVIKDANLYISGLPRTMTQKD 121
Score = 43.1 bits (100), Expect = 0.021
Identities = 25/72 (34%), Positives = 38/72 (52%)
Query: 46 LFVDGIAESVSYHQIRGLFAQFGRLVNVFVQRKKKLGRRFRFGFVRFTSWKVAAVAIKSL 105
+F+ + + + +F FG + NV V R + FGFV T+++ AA+AI SL
Sbjct: 246 IFIYNLGQDADEGILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYEEAAMAIASL 305
Query: 106 DGVRLGGASLSV 117
+G RLG L V
Sbjct: 306 NGYRLGDKILQV 317
Score = 38.1 bits (87), Expect = 0.67
Identities = 22/83 (26%), Positives = 43/83 (51%), Gaps = 2/83 (2%)
Query: 45 SLFVDGIAESVSYHQIRGLFAQFGRLVNVFVQRKKKLGRRFRFGFVRFTSWKVAAVAIKS 104
+L++ G+ +++ + +F++FGR++N V + G F+RF A AI S
Sbjct: 107 NLYISGLPRTMTQKDVEDMFSRFGRIINSRVLVDQTTGLSRGVAFIRFDKRSEAEEAITS 166
Query: 105 LDGVRLGGAS--LSVGLAKPPQK 125
+G + G+S ++V A P +
Sbjct: 167 FNGHKPPGSSEPITVKFAANPNQ 189
>dbj|BAC28748.1| unnamed protein product [Mus musculus]
Length = 326
Score = 50.8 bits (120), Expect = 1e-04
Identities = 25/101 (24%), Positives = 56/101 (54%)
Query: 45 SLFVDGIAESVSYHQIRGLFAQFGRLVNVFVQRKKKLGRRFRFGFVRFTSWKVAAVAIKS 104
+L V+ + ++++ ++R LF+ G + + + R K G +GFV + + K A AI +
Sbjct: 21 NLIVNYLPQNMTQEELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAIST 80
Query: 105 LDGVRLGGASLSVGLAKPPQKVVSRSDAKVANVCSVIKKVD 145
L+G+RL ++ V A+P +V+ ++ ++ + + + D
Sbjct: 81 LNGLRLQSKTIKVSYARPSSEVIKDANLYISGLPRTMTQKD 121
Score = 43.1 bits (100), Expect = 0.021
Identities = 25/72 (34%), Positives = 38/72 (52%)
Query: 46 LFVDGIAESVSYHQIRGLFAQFGRLVNVFVQRKKKLGRRFRFGFVRFTSWKVAAVAIKSL 105
+F+ + + + +F FG + NV V R + FGFV T+++ AA+AI SL
Sbjct: 246 IFIYNLGQDADEGILWRMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYEEAAMAIASL 305
Query: 106 DGVRLGGASLSV 117
+G RLG L V
Sbjct: 306 NGYRLGDKILQV 317
Score = 38.1 bits (87), Expect = 0.67
Identities = 22/83 (26%), Positives = 43/83 (51%), Gaps = 2/83 (2%)
Query: 45 SLFVDGIAESVSYHQIRGLFAQFGRLVNVFVQRKKKLGRRFRFGFVRFTSWKVAAVAIKS 104
+L++ G+ +++ + +F++FGR++N V + G F+RF A AI S
Sbjct: 107 NLYISGLPRTMTQKDVEDMFSRFGRIINSRVLVDQTTGLSRGVAFIRFDKRSEAEEAITS 166
Query: 105 LDGVRLGGAS--LSVGLAKPPQK 125
+G + G+S ++V A P +
Sbjct: 167 FNGHKPPGSSEPITVKFAANPNQ 189
>gb|AAP88795.1| ELAV (embryonic lethal, abnormal vision, Drosophila)-like 1 (Hu
antigen R) [Homo sapiens] gi|60654997|gb|AAX32062.1|
ELAV-like 1 [synthetic construct]
gi|60654995|gb|AAX32061.1| ELAV-like 1 [synthetic
construct] gi|60654993|gb|AAX32060.1| ELAV-like 1
[synthetic construct] gi|60654991|gb|AAX32059.1|
ELAV-like 1 [synthetic construct]
gi|38201714|ref|NP_001410.2| ELAV-like 1 [Homo sapiens]
gi|13097228|gb|AAH03376.1| ELAV-like 1 [Homo sapiens]
gi|20981691|sp|Q15717|ELAV1_HUMAN ELAV-like protein 1
(Hu-antigen R) (HuR)
Length = 326
Score = 50.4 bits (119), Expect = 1e-04
Identities = 25/101 (24%), Positives = 56/101 (54%)
Query: 45 SLFVDGIAESVSYHQIRGLFAQFGRLVNVFVQRKKKLGRRFRFGFVRFTSWKVAAVAIKS 104
+L V+ + ++++ ++R LF+ G + + + R K G +GFV + + K A AI +
Sbjct: 21 NLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAINT 80
Query: 105 LDGVRLGGASLSVGLAKPPQKVVSRSDAKVANVCSVIKKVD 145
L+G+RL ++ V A+P +V+ ++ ++ + + + D
Sbjct: 81 LNGLRLQSKTIKVSYARPSSEVIKDANLYISGLPRTMTQKD 121
Score = 43.1 bits (100), Expect = 0.021
Identities = 25/72 (34%), Positives = 38/72 (52%)
Query: 46 LFVDGIAESVSYHQIRGLFAQFGRLVNVFVQRKKKLGRRFRFGFVRFTSWKVAAVAIKSL 105
+F+ + + + +F FG + NV V R + FGFV T+++ AA+AI SL
Sbjct: 246 IFIYNLGQDADEGILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYEEAAMAIASL 305
Query: 106 DGVRLGGASLSV 117
+G RLG L V
Sbjct: 306 NGYRLGDKILQV 317
Score = 38.1 bits (87), Expect = 0.67
Identities = 22/83 (26%), Positives = 43/83 (51%), Gaps = 2/83 (2%)
Query: 45 SLFVDGIAESVSYHQIRGLFAQFGRLVNVFVQRKKKLGRRFRFGFVRFTSWKVAAVAIKS 104
+L++ G+ +++ + +F++FGR++N V + G F+RF A AI S
Sbjct: 107 NLYISGLPRTMTQKDVEDMFSRFGRIINSRVLVDQTTGLSRGVAFIRFDKRSEAEEAITS 166
Query: 105 LDGVRLGGAS--LSVGLAKPPQK 125
+G + G+S ++V A P +
Sbjct: 167 FNGHKPPGSSEPITVKFAANPNQ 189
>gb|AAB41913.1| HuR RNA binding protein
Length = 326
Score = 50.4 bits (119), Expect = 1e-04
Identities = 25/101 (24%), Positives = 56/101 (54%)
Query: 45 SLFVDGIAESVSYHQIRGLFAQFGRLVNVFVQRKKKLGRRFRFGFVRFTSWKVAAVAIKS 104
+L V+ + ++++ ++R LF+ G + + + R K G +GFV + + K A AI +
Sbjct: 21 NLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAINT 80
Query: 105 LDGVRLGGASLSVGLAKPPQKVVSRSDAKVANVCSVIKKVD 145
L+G+RL ++ V A+P +V+ ++ ++ + + + D
Sbjct: 81 LNGLRLQSKTIKVSYARPSSEVIKDANLYISGLPRTMTQKD 121
Score = 43.1 bits (100), Expect = 0.021
Identities = 25/72 (34%), Positives = 38/72 (52%)
Query: 46 LFVDGIAESVSYHQIRGLFAQFGRLVNVFVQRKKKLGRRFRFGFVRFTSWKVAAVAIKSL 105
+F+ + + + +F FG + NV V R + FGFV T+++ AA+AI SL
Sbjct: 246 IFIYNLGQDADEGILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYEEAAMAIASL 305
Query: 106 DGVRLGGASLSV 117
+G RLG L V
Sbjct: 306 NGYRLGDKILQV 317
Score = 38.1 bits (87), Expect = 0.67
Identities = 22/83 (26%), Positives = 43/83 (51%), Gaps = 2/83 (2%)
Query: 45 SLFVDGIAESVSYHQIRGLFAQFGRLVNVFVQRKKKLGRRFRFGFVRFTSWKVAAVAIKS 104
+L++ G+ +++ + +F++FGR++N V + G F+RF A AI S
Sbjct: 107 NLYISGLPRTMTQKDVEDMFSRFGRIINSRVLVDQTTGLSRGVAFIRFDKRSEAEEAITS 166
Query: 105 LDGVRLGGAS--LSVGLAKPPQK 125
+G + G+S ++V A P +
Sbjct: 167 FNGHKPPGSSEPIAVKFAANPNQ 189
>dbj|BAE00717.1| unnamed protein product [Macaca fascicularis]
Length = 326
Score = 50.4 bits (119), Expect = 1e-04
Identities = 25/101 (24%), Positives = 56/101 (54%)
Query: 45 SLFVDGIAESVSYHQIRGLFAQFGRLVNVFVQRKKKLGRRFRFGFVRFTSWKVAAVAIKS 104
+L V+ + ++++ ++R LF+ G + + + R K G +GFV + + K A AI +
Sbjct: 21 NLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAINT 80
Query: 105 LDGVRLGGASLSVGLAKPPQKVVSRSDAKVANVCSVIKKVD 145
L+G+RL ++ V A+P +V+ ++ ++ + + + D
Sbjct: 81 LNGLRLQSKTIKVSYARPSSEVIKDANLYISGLPRTMTQKD 121
Score = 44.3 bits (103), Expect = 0.009
Identities = 26/74 (35%), Positives = 39/74 (52%)
Query: 46 LFVDGIAESVSYHQIRGLFAQFGRLVNVFVQRKKKLGRRFRFGFVRFTSWKVAAVAIKSL 105
+F+ + + + +F FG + NV V R + FGFV T+++ AA+AI SL
Sbjct: 246 IFIYNLGQDADEGILWQMFEPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYEEAAMAIASL 305
Query: 106 DGVRLGGASLSVGL 119
+G RLG L V L
Sbjct: 306 NGYRLGDKILQVSL 319
Score = 38.1 bits (87), Expect = 0.67
Identities = 22/83 (26%), Positives = 43/83 (51%), Gaps = 2/83 (2%)
Query: 45 SLFVDGIAESVSYHQIRGLFAQFGRLVNVFVQRKKKLGRRFRFGFVRFTSWKVAAVAIKS 104
+L++ G+ +++ + +F++FGR++N V + G F+RF A AI S
Sbjct: 107 NLYISGLPRTMTQKDVEDMFSRFGRIINSRVLVDQTTGLSRGVAFIRFDKRSEAEEAITS 166
Query: 105 LDGVRLGGAS--LSVGLAKPPQK 125
+G + G+S ++V A P +
Sbjct: 167 FNGHKPPGSSEPITVKFAANPNQ 189
>ref|XP_635247.1| hypothetical protein DDB0183926 [Dictyostelium discoideum]
gi|60463542|gb|EAL61727.1| hypothetical protein
DDB0183926 [Dictyostelium discoideum]
Length = 489
Score = 50.4 bits (119), Expect = 1e-04
Identities = 36/112 (32%), Positives = 55/112 (48%), Gaps = 1/112 (0%)
Query: 8 GLGSAVGDGVDVGDEAADEEDGSTPNQKCSGVSRVCVSLFVDGIAESVSYHQIRGLFAQF 67
G+G +G+G++ G ++ G N+K V +LFV I S + + GLF Q+
Sbjct: 368 GMGGPMGNGMNNGMGGMNQ-GGPMGNKKNQSVGPQGSNLFVYNIPNYFSDNDLLGLFQQY 426
Query: 68 GRLVNVFVQRKKKLGRRFRFGFVRFTSWKVAAVAIKSLDGVRLGGASLSVGL 119
G +V+ V K G FGFV + + A +AI +L G + G L V L
Sbjct: 427 GIVVSAKVYVDKNTGVSKGFGFVSYDNPASANLAISNLHGQMMAGKKLKVSL 478
Database: nr
Posted date: Jul 5, 2005 12:34 AM
Number of letters in database: 863,360,394
Number of sequences in database: 2,540,612
Lambda K H
0.320 0.139 0.415
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 920,341,865
Number of Sequences: 2540612
Number of extensions: 41081109
Number of successful extensions: 102190
Number of sequences better than 10.0: 2100
Number of HSP's better than 10.0 without gapping: 1308
Number of HSP's successfully gapped in prelim test: 792
Number of HSP's that attempted gapping in prelim test: 99565
Number of HSP's gapped (non-prelim): 3212
length of query: 515
length of database: 863,360,394
effective HSP length: 133
effective length of query: 382
effective length of database: 525,458,998
effective search space: 200725337236
effective search space used: 200725337236
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 77 (34.3 bits)
Lotus: description of TM0252b.2