BLAST2 result
BLASTP 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TM0252a.4
(153 letters)
Database: nr
2,540,612 sequences; 863,360,394 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAN13210.1| unknown protein [Arabidopsis thaliana] gi|2046561... 164 4e-40
gb|AAC16259.1| unknown protein [Arabidopsis thaliana] gi|7487524... 164 4e-40
dbj|BAD45609.1| RNA polymerase I specific transcription initiati... 158 2e-38
dbj|BAD45608.1| putative RNA polymerase I transcription factor R... 158 2e-38
ref|NP_174347.1| RNA polymerase I specific transcription initiat... 152 2e-36
gb|AAD25746.1| EST gb|Z37678 comes from this gene. [Arabidopsis ... 152 2e-36
gb|AAC28984.1| unknown protein [Arabidopsis thaliana] gi|1522505... 117 4e-26
gb|EAA76769.1| hypothetical protein FG07086.1 [Gibberella zeae P... 61 5e-09
gb|AAF66160.1| RRN3 [Homo sapiens] 58 4e-08
gb|AAH71868.1| RRN3 protein [Homo sapiens] 58 4e-08
emb|CAC07955.1| transcription initiation factor IA protein [Homo... 58 5e-08
ref|XP_636150.1| hypothetical protein DDB0188479 [Dictyostelium ... 58 5e-08
gb|AAH34110.1| Rrn3 protein [Mus musculus] 57 9e-08
ref|XP_358764.1| PREDICTED: similar to RRN3 [Mus musculus] 57 9e-08
ref|XP_156394.3| PREDICTED: Rrn3 protein [Mus musculus] 57 9e-08
gb|EAL87971.1| RNA polymerase I specific transcription initiatio... 56 2e-07
emb|CAH93277.1| hypothetical protein [Pongo pygmaeus] 56 2e-07
gb|AAH55781.1| Rrn3 protein [Mus musculus] 56 2e-07
gb|AAH73661.1| LOC443681 protein [Xenopus laevis] 55 4e-07
emb|CAG00803.1| unnamed protein product [Tetraodon nigroviridis] 55 4e-07
>gb|AAN13210.1| unknown protein [Arabidopsis thaliana] gi|20465617|gb|AAM20140.1|
unknown protein [Arabidopsis thaliana]
gi|30686199|ref|NP_850236.1| RNA polymerase I specific
transcription initiation factor RRN3 family protein
[Arabidopsis thaliana]
Length = 613
Score = 164 bits (415), Expect = 4e-40
Identities = 81/131 (61%), Positives = 104/131 (78%), Gaps = 4/131 (3%)
Query: 1 AIMYVLCFRMRSLVDIPRLKLQLLNMPMEPIWKHKLSPLKVCLPTVVEEFLRQAKAAQLF 60
AIMYVLCFRMRS++D+PR + QL P+E I HKL+PL VCLP+VV EFLRQAK LF
Sbjct: 431 AIMYVLCFRMRSILDVPRFRSQLT--PLESILMHKLNPLMVCLPSVVAEFLRQAKEGGLF 488
Query: 61 MSSSETFVFNDLLESDDLSRSFGGIDRLDMFFPFDPCLSKKSESYIRPHFVRWSRVRTTY 120
+ S ++F+F+DLLES+ LSR+FGG +RLD FFPFDPCL K S S+I P+F+ WS V+ TY
Sbjct: 489 IVS-DSFIFDDLLESE-LSRAFGGFERLDTFFPFDPCLLKSSNSFISPNFIYWSMVKATY 546
Query: 121 DSDDDEDGSEM 131
D DDD++ +E+
Sbjct: 547 DEDDDDNDAEV 557
>gb|AAC16259.1| unknown protein [Arabidopsis thaliana] gi|7487524|pir||T01360
hypothetical protein At2g34750 [imported] - Arabidopsis
thaliana
Length = 602
Score = 164 bits (415), Expect = 4e-40
Identities = 81/131 (61%), Positives = 104/131 (78%), Gaps = 4/131 (3%)
Query: 1 AIMYVLCFRMRSLVDIPRLKLQLLNMPMEPIWKHKLSPLKVCLPTVVEEFLRQAKAAQLF 60
AIMYVLCFRMRS++D+PR + QL P+E I HKL+PL VCLP+VV EFLRQAK LF
Sbjct: 420 AIMYVLCFRMRSILDVPRFRSQLT--PLESILMHKLNPLMVCLPSVVAEFLRQAKEGGLF 477
Query: 61 MSSSETFVFNDLLESDDLSRSFGGIDRLDMFFPFDPCLSKKSESYIRPHFVRWSRVRTTY 120
+ S ++F+F+DLLES+ LSR+FGG +RLD FFPFDPCL K S S+I P+F+ WS V+ TY
Sbjct: 478 IVS-DSFIFDDLLESE-LSRAFGGFERLDTFFPFDPCLLKSSNSFISPNFIYWSMVKATY 535
Query: 121 DSDDDEDGSEM 131
D DDD++ +E+
Sbjct: 536 DEDDDDNDAEV 546
>dbj|BAD45609.1| RNA polymerase I specific transcription initiation factor RRN3-like
[Oryza sativa (japonica cultivar-group)]
gi|52077032|dbj|BAD46065.1| RNA polymerase I specific
transcription initiation factor RRN3-like [Oryza sativa
(japonica cultivar-group)]
Length = 291
Score = 158 bits (400), Expect = 2e-38
Identities = 81/150 (54%), Positives = 108/150 (72%), Gaps = 2/150 (1%)
Query: 1 AIMYVLCFRMRSLVDIPRLKLQLLNMPMEPIWKHKLSPLKVCLPTVVEEFLRQAKAAQLF 60
A+MY+LCFR+RS++D P LK QL NMP I H L PLKVCLP++V+EFLRQAKAA+LF
Sbjct: 95 AVMYILCFRLRSIMDYPNLKAQLFNMPFGYILTHPLEPLKVCLPSIVDEFLRQAKAARLF 154
Query: 61 MSSSETFVFNDLLESDDLSRSFGGIDRLDMFFPFDPCLSKKSESYIRPHFVRWSRVRTTY 120
+S + F D LES DLS++FGG++RLDMFFPFDP L K+S+ Y+RP+F WS V+TTY
Sbjct: 155 NASVHS-EFEDALES-DLSKTFGGMNRLDMFFPFDPYLLKESDRYMRPNFEYWSMVKTTY 212
Query: 121 DSDDDEDGSEMSHDDFVDRNAKELDMMVSV 150
++ + + E+ D + N LD V +
Sbjct: 213 NNYNSDVDDELVDLDAPEMNVGSLDDHVEI 242
>dbj|BAD45608.1| putative RNA polymerase I transcription factor RRN3 [Oryza sativa
(japonica cultivar-group)] gi|52077031|dbj|BAD46064.1|
putative RNA polymerase I transcription factor RRN3
[Oryza sativa (japonica cultivar-group)]
Length = 622
Score = 158 bits (400), Expect = 2e-38
Identities = 81/150 (54%), Positives = 108/150 (72%), Gaps = 2/150 (1%)
Query: 1 AIMYVLCFRMRSLVDIPRLKLQLLNMPMEPIWKHKLSPLKVCLPTVVEEFLRQAKAAQLF 60
A+MY+LCFR+RS++D P LK QL NMP I H L PLKVCLP++V+EFLRQAKAA+LF
Sbjct: 426 AVMYILCFRLRSIMDYPNLKAQLFNMPFGYILTHPLEPLKVCLPSIVDEFLRQAKAARLF 485
Query: 61 MSSSETFVFNDLLESDDLSRSFGGIDRLDMFFPFDPCLSKKSESYIRPHFVRWSRVRTTY 120
+S + F D LES DLS++FGG++RLDMFFPFDP L K+S+ Y+RP+F WS V+TTY
Sbjct: 486 NASVHS-EFEDALES-DLSKTFGGMNRLDMFFPFDPYLLKESDRYMRPNFEYWSMVKTTY 543
Query: 121 DSDDDEDGSEMSHDDFVDRNAKELDMMVSV 150
++ + + E+ D + N LD V +
Sbjct: 544 NNYNSDVDDELVDLDAPEMNVGSLDDHVEI 573
>ref|NP_174347.1| RNA polymerase I specific transcription initiation factor RRN3
family protein [Arabidopsis thaliana]
Length = 604
Score = 152 bits (384), Expect = 2e-36
Identities = 79/127 (62%), Positives = 98/127 (76%), Gaps = 4/127 (3%)
Query: 1 AIMYVLCFRMRSLVDIPRLKLQLLNMPMEPIWKHKLSPLKVCLPTVVEEFLRQAKAAQLF 60
AI+YVLCFRMRS+V+IPR + Q ++ E I HKL+PL VCLP+VV EFL+QAKA LF
Sbjct: 418 AILYVLCFRMRSIVEIPRFQSQFRSL--ESILSHKLNPLLVCLPSVVSEFLKQAKAGGLF 475
Query: 61 MSSSETFVFNDLLESDDLSRSFGGIDRLDMFFPFDPCLSKKSESYIRPHFVRWSRVRTTY 120
+ S E+F+F+DL ES+ LSR+FGG +RLD FFPFDPCL K S SYI P+F WS V+TTY
Sbjct: 476 IVS-ESFIFDDLHESE-LSRAFGGFERLDTFFPFDPCLLKMSSSYISPNFNFWSMVKTTY 533
Query: 121 DSDDDED 127
D DE+
Sbjct: 534 GEDGDEE 540
>gb|AAD25746.1| EST gb|Z37678 comes from this gene. [Arabidopsis thaliana]
gi|25354727|pir||B86431 hypothetical protein T5I8.4
[imported] - Arabidopsis thaliana
Length = 622
Score = 152 bits (384), Expect = 2e-36
Identities = 79/127 (62%), Positives = 98/127 (76%), Gaps = 4/127 (3%)
Query: 1 AIMYVLCFRMRSLVDIPRLKLQLLNMPMEPIWKHKLSPLKVCLPTVVEEFLRQAKAAQLF 60
AI+YVLCFRMRS+V+IPR + Q ++ E I HKL+PL VCLP+VV EFL+QAKA LF
Sbjct: 436 AILYVLCFRMRSIVEIPRFQSQFRSL--ESILSHKLNPLLVCLPSVVSEFLKQAKAGGLF 493
Query: 61 MSSSETFVFNDLLESDDLSRSFGGIDRLDMFFPFDPCLSKKSESYIRPHFVRWSRVRTTY 120
+ S E+F+F+DL ES+ LSR+FGG +RLD FFPFDPCL K S SYI P+F WS V+TTY
Sbjct: 494 IVS-ESFIFDDLHESE-LSRAFGGFERLDTFFPFDPCLLKMSSSYISPNFNFWSMVKTTY 551
Query: 121 DSDDDED 127
D DE+
Sbjct: 552 GEDGDEE 558
>gb|AAC28984.1| unknown protein [Arabidopsis thaliana] gi|15225056|ref|NP_181457.1|
RNA polymerase I specific transcription initiation
factor RRN3 family protein [Arabidopsis thaliana]
gi|7487048|pir||T02578 hypothetical protein At2g39240
[imported] - Arabidopsis thaliana
Length = 545
Score = 117 bits (294), Expect = 4e-26
Identities = 70/140 (50%), Positives = 92/140 (65%), Gaps = 16/140 (11%)
Query: 1 AIMYVLCFRMRSLVDIPRLKLQLLNMPMEPIWKHKLSPLKVCLPTVVEEFLRQAKAAQLF 60
AI+YVLCFRMRS++++P + QL P+E + HKL PL+VCL +VV EFL QAKA LF
Sbjct: 375 AILYVLCFRMRSILEVPHFQSQLT--PLESVLSHKLDPLRVCLSSVVSEFLIQAKACGLF 432
Query: 61 MSSSETFVFNDLLESDDLSRSFGGIDRLDMFFPFDPCLSKKSESYIRPHFVRWSRVRTTY 120
+ S+ F+F+DL ES +LSR+ GG FFPF P L +KS S I PHF++ S V+ TY
Sbjct: 433 I-VSDAFIFDDLSES-ELSRALGG------FFPF-PWLLEKSNSLISPHFIKRSEVKKTY 483
Query: 121 DSDD-----DEDGSEMSHDD 135
+ + D D E S DD
Sbjct: 484 EQAEVTVYGDTDNEEDSDDD 503
>gb|EAA76769.1| hypothetical protein FG07086.1 [Gibberella zeae PH-1]
gi|46125417|ref|XP_387262.1| hypothetical protein
FG07086.1 [Gibberella zeae PH-1]
Length = 688
Score = 61.2 bits (147), Expect = 5e-09
Identities = 47/182 (25%), Positives = 73/182 (39%), Gaps = 39/182 (21%)
Query: 1 AIMYVLCFRMRSLVDI------PRLKLQLLNMPMEPIWKH------------KLSPLKVC 42
A +Y+ CFR + L+ + P + ME W KL+PLKVC
Sbjct: 504 ATLYIFCFRWQDLIVVAPESADPEDPASYIGQEME--WMGTCRRDLSAQIFGKLNPLKVC 561
Query: 43 LPTVVEEFLRQA---------------KAAQLFMSSSETFVFNDLLESDDLSRSFGGIDR 87
P++VEEF R A K +L + T+ L +
Sbjct: 562 APSIVEEFARIAHRLNFMYIYPLIESNKRIRLSQYLTATYSTGGALRDAGYDMQDESFHQ 621
Query: 88 LDMFFPFDPCLSKKSESYIRPHFVRWSRV----RTTYDSDDDEDGSEMSHDDFVDRNAKE 143
LD +FPFDP S+ ++ +V W + DSDD +D E+ ++F D+ + +
Sbjct: 622 LDPYFPFDPYQLPISKRWLENDYVEWKSITGLNAEDEDSDDADDEDELDEEEFEDKTSTD 681
Query: 144 LD 145
D
Sbjct: 682 SD 683
>gb|AAF66160.1| RRN3 [Homo sapiens]
Length = 651
Score = 58.2 bits (139), Expect = 4e-08
Identities = 50/166 (30%), Positives = 74/166 (44%), Gaps = 21/166 (12%)
Query: 1 AIMYVLCFRMRSLVDIPRLK-----LQLLNMPMEPIWKHKLSPLKVCLPTVVEEFLRQAK 55
A+ Y FR + L+ LK LQ LN E I +L+PLK+CLP+VV F
Sbjct: 462 AVFYTFVFRHKQLLS-GNLKEGLQYLQSLNF--ERIVMSQLNPLKICLPSVVNFFAAITN 518
Query: 56 AAQLFMSSSETFVFNDLLESDDLSRSFGGIDR-------LDMFFPFDPCLSKKSESYIRP 108
QL T + + + + RS G D LD FFPFDPC+ K+S+ +I P
Sbjct: 519 KYQLVFCY--TIIERNNRQMLPVIRSTAGGDSVQICTNPLDTFFPFDPCVLKRSKKFIDP 576
Query: 109 HFVRWSRVRT----TYDSDDDEDGSEMSHDDFVDRNAKELDMMVSV 150
+ W + + +D E DDF+ + D ++ +
Sbjct: 577 IYQVWEDMSAEELQEFKKPMKKDIVEDEDDDFLKGEVPQNDTVIGI 622
>gb|AAH71868.1| RRN3 protein [Homo sapiens]
Length = 430
Score = 58.2 bits (139), Expect = 4e-08
Identities = 50/166 (30%), Positives = 74/166 (44%), Gaps = 21/166 (12%)
Query: 1 AIMYVLCFRMRSLVDIPRLK-----LQLLNMPMEPIWKHKLSPLKVCLPTVVEEFLRQAK 55
A+ Y FR + L+ LK LQ LN E I +L+PLK+CLP+VV F
Sbjct: 241 AVFYTFVFRHKQLLS-GNLKEGLQYLQSLNF--ERIVMSQLNPLKICLPSVVNFFAAITN 297
Query: 56 AAQLFMSSSETFVFNDLLESDDLSRSFGGIDR-------LDMFFPFDPCLSKKSESYIRP 108
QL T + + + + RS G D LD FFPFDPC+ K+S+ +I P
Sbjct: 298 KYQLVFCY--TIIERNNRQMLPVIRSTAGGDSVQICTNPLDTFFPFDPCVLKRSKKFIDP 355
Query: 109 HFVRWSRVRT----TYDSDDDEDGSEMSHDDFVDRNAKELDMMVSV 150
+ W + + +D E DDF+ + D ++ +
Sbjct: 356 IYQVWEDMSAEELQEFKKPMKKDIVEDEDDDFLKGEVPQNDTVIGI 401
>emb|CAC07955.1| transcription initiation factor IA protein [Homo sapiens]
gi|21361631|ref|NP_060897.2| RRN3 RNA polymerase I
transcription factor homolog [Homo sapiens]
Length = 651
Score = 57.8 bits (138), Expect = 5e-08
Identities = 50/166 (30%), Positives = 74/166 (44%), Gaps = 21/166 (12%)
Query: 1 AIMYVLCFRMRSLVDIPRLK-----LQLLNMPMEPIWKHKLSPLKVCLPTVVEEFLRQAK 55
A+ Y FR + L+ LK LQ LN E I +L+PLK+CLP+VV F
Sbjct: 462 AVFYXFVFRHKQLLS-GNLKEGLQYLQSLNF--ERIVMSQLNPLKICLPSVVNFFAAITN 518
Query: 56 AAQLFMSSSETFVFNDLLESDDLSRSFGGIDR-------LDMFFPFDPCLSKKSESYIRP 108
QL T + + + + RS G D LD FFPFDPC+ K+S+ +I P
Sbjct: 519 KYQLVFCY--TIIERNNRQMLPVIRSTAGGDSVQICTNPLDTFFPFDPCVLKRSKKFIDP 576
Query: 109 HFVRWSRVRT----TYDSDDDEDGSEMSHDDFVDRNAKELDMMVSV 150
+ W + + +D E DDF+ + D ++ +
Sbjct: 577 IYQVWEDMSAEELQEFKKPMKKDIVEDEDDDFLKGEVPQNDTVIGI 622
>ref|XP_636150.1| hypothetical protein DDB0188479 [Dictyostelium discoideum]
gi|60464502|gb|EAL62647.1| hypothetical protein
DDB0188479 [Dictyostelium discoideum]
Length = 706
Score = 57.8 bits (138), Expect = 5e-08
Identities = 42/165 (25%), Positives = 68/165 (40%), Gaps = 20/165 (12%)
Query: 1 AIMYVLCFRMRSLVDIPRLKLQLLNMPMEPIWKH-----------KLSPLKVCLPTVVEE 49
+I Y+ CFR ++D K + W+ +L+P KVCL +VV +
Sbjct: 490 SIYYIFCFRNSVILDFTDFKNDKKDEKQREFWQDLHAAFRKISMSRLNPFKVCLKSVVRQ 549
Query: 50 FLRQAKAAQLFMSSSETFVFND--LLESDDLSRSFGGI----DRLDMFFPFDPCLSKKSE 103
F +F + N LL ++ S ++ D FFPFDP L S
Sbjct: 550 FCCVCLRVGIFTKCTGILKTNKNVLLSKSTITGSSAAPTVSNNQFDSFFPFDPYLLFHSS 609
Query: 104 SYIRPHFVRWSRVRTTYDSDDDEDGSEM---SHDDFVDRNAKELD 145
+ ++ W +R D ++ ED S+ DD +D+ + E D
Sbjct: 610 KFFANSYIHWKDIRKDGDEENLEDLSDQETDDEDDLLDKLSSESD 654
>gb|AAH34110.1| Rrn3 protein [Mus musculus]
Length = 513
Score = 57.0 bits (136), Expect = 9e-08
Identities = 46/153 (30%), Positives = 69/153 (45%), Gaps = 23/153 (15%)
Query: 1 AIMYVLCFRMRSLV--DIPRLKLQLLNMPMEPIWKHKLSPLKVCLPTVVEEFLRQAKAAQ 58
A+ Y + FR + L+ ++ + L ++ E I +L+PLK+CLP VV F Q
Sbjct: 317 AVFYTVVFRHKQLLSGNLKQGLQYLQSLNFERIVLSQLNPLKICLPQVVNFFAAITNKYQ 376
Query: 59 LFMSSSETFVFNDLLESDDLSRSFGGIDR-------LDMFFPFDPCLSKKSESYIRPHFV 111
L T + + + + RS G D LD FFPFDPC+ K+S+ +I P +
Sbjct: 377 LVFCY--TIMERNSRQMLPVIRSTAGGDSVQTCTNPLDTFFPFDPCVLKRSKKFIDPIYQ 434
Query: 112 RWSRVRTTYDSDDDEDGSEMSHDDFVDRNAKEL 144
W EDGS +F KE+
Sbjct: 435 IW------------EDGSAEELQEFKKSTKKEV 455
>ref|XP_358764.1| PREDICTED: similar to RRN3 [Mus musculus]
Length = 656
Score = 57.0 bits (136), Expect = 9e-08
Identities = 46/153 (30%), Positives = 69/153 (45%), Gaps = 23/153 (15%)
Query: 1 AIMYVLCFRMRSLV--DIPRLKLQLLNMPMEPIWKHKLSPLKVCLPTVVEEFLRQAKAAQ 58
A+ Y + FR + L+ ++ + L ++ E I +L+PLK+CLP VV F Q
Sbjct: 460 AVFYTVVFRHKQLLSGNLKQGLQYLQSLNFERIVLSQLNPLKICLPQVVNFFAAITNKYQ 519
Query: 59 LFMSSSETFVFNDLLESDDLSRSFGGIDR-------LDMFFPFDPCLSKKSESYIRPHFV 111
L T + + + + RS G D LD FFPFDPC+ K+S+ +I P +
Sbjct: 520 LVFCY--TIMERNSRQMLPVIRSTAGGDSVQTCTNPLDTFFPFDPCVLKRSKKFIDPIYQ 577
Query: 112 RWSRVRTTYDSDDDEDGSEMSHDDFVDRNAKEL 144
W EDGS +F KE+
Sbjct: 578 IW------------EDGSAEELQEFKKSTKKEV 598
>ref|XP_156394.3| PREDICTED: Rrn3 protein [Mus musculus]
Length = 842
Score = 57.0 bits (136), Expect = 9e-08
Identities = 46/153 (30%), Positives = 69/153 (45%), Gaps = 23/153 (15%)
Query: 1 AIMYVLCFRMRSLV--DIPRLKLQLLNMPMEPIWKHKLSPLKVCLPTVVEEFLRQAKAAQ 58
A+ Y + FR + L+ ++ + L ++ E I +L+PLK+CLP VV F Q
Sbjct: 646 AVFYTVVFRHKQLLSGNLKQGLQYLQSLNFERIVLSQLNPLKICLPQVVNFFAAITNKYQ 705
Query: 59 LFMSSSETFVFNDLLESDDLSRSFGGIDR-------LDMFFPFDPCLSKKSESYIRPHFV 111
L T + + + + RS G D LD FFPFDPC+ K+S+ +I P +
Sbjct: 706 LVFCY--TIMERNSRQMLPVIRSTAGGDSVQTCTNPLDTFFPFDPCVLKRSKKFIDPIYQ 763
Query: 112 RWSRVRTTYDSDDDEDGSEMSHDDFVDRNAKEL 144
W EDGS +F KE+
Sbjct: 764 IW------------EDGSAEELQEFKKSTKKEV 784
>gb|EAL87971.1| RNA polymerase I specific transcription initiation factor RRN3
superfamily [Aspergillus fumigatus Af293]
Length = 713
Score = 56.2 bits (134), Expect = 2e-07
Identities = 49/172 (28%), Positives = 68/172 (39%), Gaps = 38/172 (22%)
Query: 1 AIMYVLCFRMRSLV----------DIPRLKLQLLNMP------MEPIWKHKLSPLKVCLP 44
A++Y+ CFR R L I L+ + + P + KL+PLKVC P
Sbjct: 531 ALLYIFCFRWRDLTTAAMEGDTPEQIDELEPEDITFPPSVKEVLHQAIHSKLNPLKVCSP 590
Query: 45 TVVEEFLRQAKAAQLFMSSSETFVFNDLLESDDLSRS------FGGIDR----------- 87
+V EF R A+ S L S S S F ++R
Sbjct: 591 AIVSEFARMAQHLNFMYVFSILETNKRLRVSSFRSISAMADPRFSHVERETRAGDDLGYQ 650
Query: 88 LDMFFPFDPCLSKKSESYIRPHFVRWSRV-----RTTYDSDDDEDGSEMSHD 134
LD +FPFDP +S ++ +V W + + DSD D DGSE D
Sbjct: 651 LDAYFPFDPYQLPRSRRWLEDDYVHWRGIPGVDDQDEGDSDSDLDGSESEGD 702
>emb|CAH93277.1| hypothetical protein [Pongo pygmaeus]
Length = 650
Score = 56.2 bits (134), Expect = 2e-07
Identities = 52/163 (31%), Positives = 70/163 (42%), Gaps = 31/163 (19%)
Query: 1 AIMYVLCFRMRSLVDIPRLK-----LQLLNMPMEPIWKHKLSPLKVCLPTVVEEFLRQAK 55
A+ Y FR + L+ LK LQ LN E I +L+PLK+CLP+VV F
Sbjct: 461 AVFYTFVFRHKQLLS-GNLKEGLRYLQSLNF--EWIVMSQLNPLKICLPSVVNFFAAITN 517
Query: 56 AAQLFMSSSETFVFNDLLESDDLSRSFGGIDR-------LDMFFPFDPCLSKKSESYIRP 108
QL T + + + + RS G D LD FFPFDPC+ K+S+ +I P
Sbjct: 518 KYQLVFCY--TIIERNNRQMLPVIRSTAGGDSVQTCTNPLDTFFPFDPCVLKRSKKFIDP 575
Query: 109 HFVRWS--------------RVRTTYDSDDDEDGSEMSHDDFV 137
+ W R D DDD E+ +D V
Sbjct: 576 IYQVWEDMSAEELQEFKKPMRKEIVEDEDDDFLKGEVPQNDTV 618
>gb|AAH55781.1| Rrn3 protein [Mus musculus]
Length = 214
Score = 55.8 bits (133), Expect = 2e-07
Identities = 46/160 (28%), Positives = 71/160 (43%), Gaps = 25/160 (15%)
Query: 1 AIMYVLCFRMRSLV--DIPRLKLQLLNMPMEPIWKHKLSPLKVCLPTVVEEFLRQAKAAQ 58
A+ Y + FR + L+ ++ + L ++ E I +L+PLK+CLP VV F Q
Sbjct: 18 AVFYTVVFRHKQLLSGNLKQGLQYLQSLNFERIVLSQLNPLKICLPQVVNFFAAITNKYQ 77
Query: 59 LFMSSSETFVFNDLLESDDLSRSFGGIDR-------LDMFFPFDPCLSKKSESYIRPHFV 111
L T + + + + RS G D LD FFPFDPC+ K+S+ +I P +
Sbjct: 78 LVFCY--TIMERNSRQMLPVIRSTAGGDSVQTCTNPLDTFFPFDPCVLKRSKKFIDPIYQ 135
Query: 112 RW--------------SRVRTTYDSDDDEDGSEMSHDDFV 137
W ++ + D DDD E+ D V
Sbjct: 136 IWEDGSAEELQEFKKSTKKQVVEDEDDDFLKGEVPQSDTV 175
>gb|AAH73661.1| LOC443681 protein [Xenopus laevis]
Length = 636
Score = 54.7 bits (130), Expect = 4e-07
Identities = 45/167 (26%), Positives = 72/167 (42%), Gaps = 24/167 (14%)
Query: 1 AIMYVLCFRMRSLVD--IPRLKLQLLNMPMEPIWKHKLSPLKVCLPTVVEEFLRQAKAAQ 58
A+ Y FR + ++ + + L N+ +E I +L+PLK+CLP+VV F + Q
Sbjct: 450 AVFYSFIFRHKQFLEGNLRKGLTYLQNLNLERIVMCQLNPLKICLPSVVNFFAAITRKYQ 509
Query: 59 LFMSSSETFVFNDLLESDDLSRSFGGIDR-------LDMFFPFDPCLSKKSESYIRPHFV 111
L T + + + + RS G D LD FFPFDPC+ K+ + + P +
Sbjct: 510 LVFCY--TIIERNNRQMIPIVRSSTGGDSVQVSFNPLDSFFPFDPCILKRCKKLMDPFYQ 567
Query: 112 RWSRVRTTYDSDDDEDGSEM--------SHDDFVDRNAKELDMMVSV 150
W + +D G E DDF+ + D V +
Sbjct: 568 IWEE-----SNSEDLKGGEKCVKGSTADDEDDFLKGQTPQNDSSVEM 609
>emb|CAG00803.1| unnamed protein product [Tetraodon nigroviridis]
Length = 609
Score = 54.7 bits (130), Expect = 4e-07
Identities = 51/167 (30%), Positives = 76/167 (44%), Gaps = 25/167 (14%)
Query: 1 AIMYVLCFRMRSLVDIPRLK----LQLLNMPMEPIWKHKLSPLKVCLPTVVEEFLRQAKA 56
A+ YVL FR R+++D K LQ N+ E + +L+PLK+CLP V F +
Sbjct: 427 ALFYVLIFRHRAMLDGHMKKGLEYLQSFNL--ERVVMCQLNPLKLCLPAVTTMFAAITRK 484
Query: 57 AQLFMSSSETFVFNDLLESDD-----LSRSFGG------IDRLDMFFPFDPCLSKKSESY 105
Q+ F +N + + + S GG + LD FFPFDP L K+S
Sbjct: 485 YQI------VFCYNVIERNKRHMLPVVRSSTGGDCVTAKTNPLDSFFPFDPYLLKRSGQV 538
Query: 106 IRPHFVRW--SRVRTTYDSDDDEDGSEMSHDDFVDRNAKELDMMVSV 150
I P + W S + S + GS+ DDF+ + D +V +
Sbjct: 539 IEPLYQVWEESADAELFLSKTVQQGSKEDDDDFLCGEMAKGDSIVGM 585
Database: nr
Posted date: Jul 5, 2005 12:34 AM
Number of letters in database: 863,360,394
Number of sequences in database: 2,540,612
Lambda K H
0.324 0.139 0.417
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 242,647,538
Number of Sequences: 2540612
Number of extensions: 9060399
Number of successful extensions: 39951
Number of sequences better than 10.0: 73
Number of HSP's better than 10.0 without gapping: 41
Number of HSP's successfully gapped in prelim test: 32
Number of HSP's that attempted gapping in prelim test: 39817
Number of HSP's gapped (non-prelim): 100
length of query: 153
length of database: 863,360,394
effective HSP length: 129
effective length of query: 24
effective length of database: 535,621,446
effective search space: 12854914704
effective search space used: 12854914704
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 67 (30.4 bits)
Lotus: description of TM0252a.4