Lotus
BLAST2 result
BLASTP 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= TM0248.1
         (119 letters)

Database: nr 
           2,540,612 sequences; 863,360,394 total letters

Searching..................................................done


                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

ref|NP_912588.1| Putative non-LTR retroelement reverse transcrip...    64  1e-09
emb|CAD40747.2| OSJNBa0072D21.1 [Oryza sativa (japonica cultivar...    63  1e-09
ref|NP_680357.1| RNase H domain-containing protein [Arabidopsis ...    61  7e-09
ref|XP_470848.1| hypothetical protein [Oryza sativa (japonica cu...    60  2e-08
emb|CAB10337.1| reverse transcriptase like protein [Arabidopsis ...    59  3e-08
emb|CAE05959.1| OSJNBb0088C09.18 [Oryza sativa (japonica cultiva...    59  3e-08
ref|NP_909549.1| putative reverse transcriptase [Oryza sativa (j...    59  4e-08
ref|XP_471568.1| OSJNBb0032D24.9 [Oryza sativa (japonica cultiva...    57  8e-08
pir||A96682 protein F1E22.12 [imported] - Arabidopsis thaliana g...    57  1e-07
emb|CAE03883.2| OSJNBb0015N08.11 [Oryza sativa (japonica cultiva...    56  2e-07
gb|AAP53436.1| putative retroelement [Oryza sativa (japonica cul...    56  2e-07
gb|AAP53939.1| putative non-LTR retroelement reverse transcripta...    55  3e-07
ref|NP_909558.1| putative reverse transcriptase [Oryza sativa] g...    55  3e-07
emb|CAB81184.1| putative protein [Arabidopsis thaliana] gi|45393...    55  4e-07
ref|XP_472472.1| OSJNBa0028I23.15 [Oryza sativa (japonica cultiv...    55  4e-07
emb|CAE04095.3| OSJNBa0096F01.4 [Oryza sativa (japonica cultivar...    55  4e-07
gb|AAC33961.1| contains similarity to reverse trancriptase (Pfam...    55  4e-07
ref|NP_914522.1| unnamed protein product [Oryza sativa (japonica...    55  5e-07
gb|AAD03565.2| putative non-LTR retroelement reverse transcripta...    54  7e-07
pir||T00833 RNA-directed DNA polymerase homolog T13L16.7 - Arabi...    54  7e-07

>ref|NP_912588.1| Putative non-LTR retroelement reverse transcriptase [Oryza sativa
           (japonica cultivar-group)] gi|22748339|gb|AAN05341.1|
           Putative non-LTR retroelement reverse transcriptase
           [Oryza sativa (japonica cultivar-group)]
          Length = 603

 Score = 63.5 bits (153), Expect = 1e-09
 Identities = 27/89 (30%), Positives = 51/89 (56%), Gaps = 1/89 (1%)

Query: 31  WAKGGQTHSWYLVPWCEVSCPKENGGLGLRSTSLNNIAMLEKLVESLLRDKGKLWGRVLS 90
           W   G    + L  W  +  PK+ GGLG+++ ++ N  +L K +  L+ + G +W ++L 
Sbjct: 280 WQSDGHKRKYRLARWSVICTPKDCGGLGIQNLNVQNKCLLSKWLYKLINEDG-VWQKLLR 338

Query: 91  QKYLSNKSVLAGKYKRGDSYIWKGIVSAK 119
           +KYL+ K++   + + GDS+ W G++  K
Sbjct: 339 KKYLAKKTITLVEKQPGDSHFWAGLMEVK 367


>emb|CAD40747.2| OSJNBa0072D21.1 [Oryza sativa (japonica cultivar-group)]
           gi|50923755|ref|XP_472238.1| OSJNBa0072D21.1 [Oryza
           sativa (japonica cultivar-group)]
          Length = 710

 Score = 63.2 bits (152), Expect = 1e-09
 Identities = 32/90 (35%), Positives = 52/90 (57%), Gaps = 1/90 (1%)

Query: 30  IWAKGGQTHSWYLVPWCEVSCPKENGGLGLRSTSLNNIAMLEKLVESLLRDKGKLWGRVL 89
           ++A G +   + L  W  +  PKE GGLG+++  L N  ML K +  L  ++G +W  +L
Sbjct: 450 LFACGSEHKKYRLAKWSILCKPKECGGLGIQNLDLQNKCMLSKWLYKLWNEEG-VWQNLL 508

Query: 90  SQKYLSNKSVLAGKYKRGDSYIWKGIVSAK 119
            +KYLS K++   + K GDS+ W G++  K
Sbjct: 509 RRKYLSKKTLTHVEKKPGDSHFWSGLMMVK 538


>ref|NP_680357.1| RNase H domain-containing protein [Arabidopsis thaliana]
          Length = 633

 Score = 60.8 bits (146), Expect = 7e-09
 Identities = 34/97 (35%), Positives = 48/97 (49%), Gaps = 2/97 (2%)

Query: 23  DKNIRSCIWAKGGQTHSWYLVPWCEVSCPKENGGLGLRSTSLNNIAMLEKLVESLLRDKG 82
           D+  RS +W    +    +L+ W  V  PK  GGLG+RS    N+A+L K+   L++D+ 
Sbjct: 67  DQLSRSFLWGSTPEKRKLHLIAWDRVCLPKAEGGLGIRSARPMNLALLSKVGWRLMKDRT 126

Query: 83  KLWGRVLSQKYLSN--KSVLAGKYKRGDSYIWKGIVS 117
            LW RVL  KY     +       KR  S  W+ I S
Sbjct: 127 SLWARVLRSKYRIGGLRDTTWINTKRNASSTWRSIKS 163


>ref|XP_470848.1| hypothetical protein [Oryza sativa (japonica cultivar-group)]
           gi|29824482|gb|AAP04197.1| hypothetical protein [Oryza
           sativa (japonica cultivar-group)]
          Length = 419

 Score = 59.7 bits (143), Expect = 2e-08
 Identities = 31/98 (31%), Positives = 52/98 (52%), Gaps = 3/98 (3%)

Query: 24  KNIRSCIWAKGGQTHS--WYLVPWCEVSCPKENGGLGLRSTSLNNIAMLEKLVESLLRDK 81
           K +R  +    G  H   + L  W  +  PK+ GGLG+ +  + N   L K +  L+ ++
Sbjct: 215 KELRKNLVVGKGDDHKKKYRLTRWDIICQPKDQGGLGIHNLEIQNKCFLSKWLYKLINEE 274

Query: 82  GKLWGRVLSQKYLSNKSVLAGKYKRGDSYIWKGIVSAK 119
           G +W  +L +KYL NKS+   + K+GDS+ W  ++  K
Sbjct: 275 G-VWQDLLKRKYLYNKSITQVEKKQGDSHFWSELMKVK 311


>emb|CAB10337.1| reverse transcriptase like protein [Arabidopsis thaliana]
           gi|7268307|emb|CAB78601.1| reverse transcriptase like
           protein [Arabidopsis thaliana] gi|7485171|pir||G71420
           hypothetical protein - Arabidopsis thaliana
          Length = 929

 Score = 58.9 bits (141), Expect = 3e-08
 Identities = 33/91 (36%), Positives = 48/91 (52%)

Query: 3   SLPLLEKNEFTFKLHLHLEYDKNIRSCIWAKGGQTHSWYLVPWCEVSCPKENGGLGLRST 62
           S+P+   +       L  + DK  R+ +W    +    +L+ W +V  PK  GGLGLR++
Sbjct: 597 SIPIHTMSSILLPASLLEQLDKVSRNFLWGSTVEKRKQHLLSWKKVCRPKAAGGLGLRAS 656

Query: 63  SLNNIAMLEKLVESLLRDKGKLWGRVLSQKY 93
              N A+L K+   LL DK  LW RVL +KY
Sbjct: 657 KDMNRALLAKVGWRLLNDKVSLWARVLRRKY 687


>emb|CAE05959.1| OSJNBb0088C09.18 [Oryza sativa (japonica cultivar-group)]
           gi|32487797|emb|CAE05420.1| OSJNBa0035I04.8 [Oryza
           sativa (japonica cultivar-group)]
          Length = 357

 Score = 58.9 bits (141), Expect = 3e-08
 Identities = 31/89 (34%), Positives = 47/89 (51%), Gaps = 1/89 (1%)

Query: 31  WAKGGQTHSWYLVPWCEVSCPKENGGLGLRSTSLNNIAMLEKLVESLLRDKGKLWGRVLS 90
           W        + L  W  +  PKE GGLG+++  L N  ML K +  L  ++G +W  +L 
Sbjct: 98  WQCEEHKKKYRLAKWSILCKPKECGGLGIQNLELQNKYMLSKWLYKLWNEEG-VWQNLLR 156

Query: 91  QKYLSNKSVLAGKYKRGDSYIWKGIVSAK 119
           +KYLS K++     K GDS+ W G++  K
Sbjct: 157 RKYLSKKTLTHVDKKSGDSHFWSGLMMVK 185


>ref|NP_909549.1| putative reverse transcriptase [Oryza sativa (japonica
           cultivar-group)] gi|27764659|gb|AAO23084.1| putative
           reverse transcriptase [Oryza sativa (japonica
           cultivar-group)]
          Length = 427

 Score = 58.5 bits (140), Expect = 4e-08
 Identities = 30/89 (33%), Positives = 48/89 (53%), Gaps = 1/89 (1%)

Query: 31  WAKGGQTHSWYLVPWCEVSCPKENGGLGLRSTSLNNIAMLEKLVESLLRDKGKLWGRVLS 90
           W        + L  W  +  PKE GGLG+++  L N  ML K +  L  ++ ++W  +L 
Sbjct: 214 WQCEEHKKKYRLAKWSILCKPKECGGLGIQNLELQNKCMLSKWLYKLWNEE-RVWQNLLR 272

Query: 91  QKYLSNKSVLAGKYKRGDSYIWKGIVSAK 119
           +KYLS K++   + K GDS+ W G++  K
Sbjct: 273 RKYLSKKTLTHVEKKPGDSHFWSGLMMVK 301


>ref|XP_471568.1| OSJNBb0032D24.9 [Oryza sativa (japonica cultivar-group)]
           gi|38344358|emb|CAE04079.2| OSJNBb0032D24.9 [Oryza
           sativa (japonica cultivar-group)]
          Length = 221

 Score = 57.4 bits (137), Expect = 8e-08
 Identities = 28/73 (38%), Positives = 44/73 (59%), Gaps = 1/73 (1%)

Query: 47  EVSCPKENGGLGLRSTSLNNIAMLEKLVESLLRDKGKLWGRVLSQKYLSNKSVLAGKYKR 106
           E S PKE GGLG+ +  L N  +L K V  L+ ++G +W  +L +KYL+ K +     + 
Sbjct: 31  ESSRPKECGGLGIHNLELQNKCLLSKWVYKLINEEG-VWQNLLMKKYLAKKCITQVDKQP 89

Query: 107 GDSYIWKGIVSAK 119
           GDS+ W G+++ K
Sbjct: 90  GDSHFWSGLMAVK 102


>pir||A96682 protein F1E22.12 [imported] - Arabidopsis thaliana
           gi|6686397|gb|AAF23831.1| F1E22.12 [Arabidopsis
           thaliana]
          Length = 1055

 Score = 57.0 bits (136), Expect = 1e-07
 Identities = 34/94 (36%), Positives = 50/94 (53%), Gaps = 10/94 (10%)

Query: 7   LEKNEFTFKLHLHLEYDKNIR-------SCIWAKGGQTHSWYLVPWCEVSCPKENGGLGL 59
           LEK++  F  ++  E  K I        +C W K  + H   LV W +V  PK+ GGLG+
Sbjct: 156 LEKSKIFFSKNVSRELGKLISDESGIQSTCDWGKKKKQH---LVKWSKVCSPKKEGGLGV 212

Query: 60  RSTSLNNIAMLEKLVESLLRDKGKLWGRVLSQKY 93
           R+    N A++ K+   LL++K  LW  VL +KY
Sbjct: 213 RAAKSMNRALISKVGWRLLQEKNSLWTLVLQKKY 246


>emb|CAE03883.2| OSJNBb0015N08.11 [Oryza sativa (japonica cultivar-group)]
           gi|21741977|emb|CAD41785.1| OSJNBa0035M09.1 [Oryza
           sativa (japonica cultivar-group)]
           gi|50928543|ref|XP_473799.1| OSJNBb0015N08.11 [Oryza
           sativa (japonica cultivar-group)]
          Length = 1026

 Score = 56.2 bits (134), Expect = 2e-07
 Identities = 28/90 (31%), Positives = 47/90 (52%), Gaps = 1/90 (1%)

Query: 30  IWAKGGQTHSWYLVPWCEVSCPKENGGLGLRSTSLNNIAMLEKLVESLLRDKGKLWGRVL 89
           +W +      ++LV W  V  P++ GGLG+      N AML K +  L  ++G  W  ++
Sbjct: 632 LWQEDQGIRKYHLVNWPLVCSPRDQGGLGVLDLEAMNKAMLGKWIWRLENEEG-WWQEII 690

Query: 90  SQKYLSNKSVLAGKYKRGDSYIWKGIVSAK 119
             KY S+K +   + K G S+ W+G++  K
Sbjct: 691 YAKYCSDKPLSGLRLKAGSSHFWQGVMEVK 720


>gb|AAP53436.1| putative retroelement [Oryza sativa (japonica cultivar-group)]
           gi|37533694|ref|NP_921149.1| putative retroelement
           [Oryza sativa (japonica cultivar-group)]
           gi|19920114|gb|AAM08546.1| Putative retroelement [Oryza
           sativa]
          Length = 586

 Score = 55.8 bits (133), Expect = 2e-07
 Identities = 34/102 (33%), Positives = 56/102 (54%), Gaps = 5/102 (4%)

Query: 18  LHLEYDKNIRSCIWAKGGQTHSWYLVPWCEVSCPKENGGLGLRSTSLNNIAMLEKLVESL 77
           L + ++K+   CI  K  +  S Y   +   +C  + GG+G+    + NIA+L K + +L
Sbjct: 299 LKINFNKSEVFCI-GKAVERQSMYSEIF---TCKIDQGGMGILDLEIMNIALLGKWLWNL 354

Query: 78  LRDKGKLWGRVLSQKYLSNKSVLAGKYKRGDSYIWKGIVSAK 119
             +K   W  +L  KYLS K++L  K K GDS+ W+G++  K
Sbjct: 355 -ENKDGWWQEILRDKYLSKKTLLGMKKKPGDSHFWQGLMEIK 395


>gb|AAP53939.1| putative non-LTR retroelement reverse transcriptase [Oryza sativa
            (japonica cultivar-group)] gi|37534700|ref|NP_921652.1|
            putative non-LTR retroelement reverse transcriptase
            [Oryza sativa (japonica cultivar-group)]
          Length = 1652

 Score = 55.5 bits (132), Expect = 3e-07
 Identities = 26/89 (29%), Positives = 47/89 (52%), Gaps = 1/89 (1%)

Query: 31   WAKGGQTHSWYLVPWCEVSCPKENGGLGLRSTSLNNIAMLEKLVESLLRDKGKLWGRVLS 90
            W        + L  W  +  PKE GGLG+++  + N  +L K +  L+ ++G +W  +L 
Sbjct: 1542 WQCDEHKKKYRLARWSVLCKPKECGGLGIQNLEIQNKCLLSKWLYKLINEEG-VWQDILR 1600

Query: 91   QKYLSNKSVLAGKYKRGDSYIWKGIVSAK 119
             KYL+ K++   +   GDS+ W G++  +
Sbjct: 1601 NKYLTKKTITQVEKCPGDSHFWAGLMGVR 1629


>ref|NP_909558.1| putative reverse transcriptase [Oryza sativa]
           gi|14018103|gb|AAK52166.1| putative reverse
           transcriptase [Oryza sativa]
          Length = 1185

 Score = 55.5 bits (132), Expect = 3e-07
 Identities = 28/73 (38%), Positives = 39/73 (53%)

Query: 45  WCEVSCPKENGGLGLRSTSLNNIAMLEKLVESLLRDKGKLWGRVLSQKYLSNKSVLAGKY 104
           W  +  PK+ GGLG R     N AML K +   L D   L  RV+  KY  + ++L  + 
Sbjct: 659 WWRMCIPKQRGGLGFRDLYCFNRAMLAKQIWRFLCDPDSLCARVMRCKYYPDGNILRARP 718

Query: 105 KRGDSYIWKGIVS 117
           K+G SY W+ I+S
Sbjct: 719 KKGSSYAWQSILS 731


>emb|CAB81184.1| putative protein [Arabidopsis thaliana] gi|4539357|emb|CAB40051.1|
            putative protein [Arabidopsis thaliana]
            gi|7486147|pir||T04278 hypothetical protein F25I24.40 -
            Arabidopsis thaliana
          Length = 1294

 Score = 55.1 bits (131), Expect = 4e-07
 Identities = 29/115 (25%), Positives = 55/115 (47%)

Query: 3    SLPLLEKNEFTFKLHLHLEYDKNIRSCIWAKGGQTHSWYLVPWCEVSCPKENGGLGLRST 62
            S+P+   + F   L++  E +  + +  W K  +      + W  +   K+ GGLG R  
Sbjct: 1161 SMPVYAMSCFKLPLNIVSEIEALLMNFWWEKNAKKREIPWIAWKRLQYSKKEGGLGFRDL 1220

Query: 63   SLNNIAMLEKLVESLLRDKGKLWGRVLSQKYLSNKSVLAGKYKRGDSYIWKGIVS 117
            +  N A+L K V  ++ +   L+ R++  +Y    S+L  K +R  SY W  +++
Sbjct: 1221 AKFNDALLAKQVWRMINNPNSLFARIMKARYFREDSILDAKRQRYQSYGWTSMLA 1275


>ref|XP_472472.1| OSJNBa0028I23.15 [Oryza sativa (japonica cultivar-group)]
           gi|39546208|emb|CAE04633.3| OSJNBa0028I23.15 [Oryza
           sativa (japonica cultivar-group)]
          Length = 593

 Score = 55.1 bits (131), Expect = 4e-07
 Identities = 29/90 (32%), Positives = 47/90 (52%), Gaps = 9/90 (10%)

Query: 31  WAKGGQTHSWYLVPWCEVSCPKENGGLGLRSTSLNNIAMLEKLVESLLRDKGKL-WGRVL 89
           W        + L  W  +  PKE GGLG+++  + N        + LLR   KL W  +L
Sbjct: 277 WQSDEHKKKYRLARWSVLCKPKECGGLGIQNLEVQN--------KCLLRGLAKLVWQNLL 328

Query: 90  SQKYLSNKSVLAGKYKRGDSYIWKGIVSAK 119
            +KYL+ K+++  + +RGDS+ W G++  K
Sbjct: 329 RKKYLAKKTIMQVQKQRGDSHFWTGLMGVK 358


>emb|CAE04095.3| OSJNBa0096F01.4 [Oryza sativa (japonica cultivar-group)]
          Length = 633

 Score = 55.1 bits (131), Expect = 4e-07
 Identities = 33/119 (27%), Positives = 55/119 (45%), Gaps = 1/119 (0%)

Query: 1   IGSLPLLEKNEFTFKLHLHLEYDKNIRSCIWAKGGQTHSWYLVPWCEVSCPKENGGLGLR 60
           + S+P      ++    +H ++D       WA       +++V W +++ PK+ GGLG  
Sbjct: 319 LSSIPSYAMGFYSLPEGVHHKFDSVRGRYYWAGNKINGKYHMVKWEDMAFPKDFGGLGFT 378

Query: 61  STSLNNIAMLEKLVESLLRDKGKLWGRVLSQKYLSNKSVLAGKYKRGDSYIWKGIVSAK 119
            T   NIA+L K +  L      L   +L  KYL    V   + + G S  WKG++S +
Sbjct: 379 ETRAMNIALLAKWIFKLESPDQSLCTSLLRNKYLQEGGVFQCRAEEG-SQFWKGVLSTR 436


>gb|AAC33961.1| contains similarity to reverse trancriptase (Pfam: rvt.hmm, score:
            42.57) [Arabidopsis thaliana] gi|7486711|pir||T01893
            hypothetical protein F8M12.22 - Arabidopsis thaliana
          Length = 1662

 Score = 55.1 bits (131), Expect = 4e-07
 Identities = 29/115 (25%), Positives = 55/115 (47%)

Query: 3    SLPLLEKNEFTFKLHLHLEYDKNIRSCIWAKGGQTHSWYLVPWCEVSCPKENGGLGLRST 62
            S+P+   + F   L++  E +  + +  W K  +      + W  +   K+ GGLG R  
Sbjct: 1181 SMPVYAMSCFKLPLNIVSEIEALLMNFWWEKNAKKREIPWIAWKRLQYSKKEGGLGFRDL 1240

Query: 63   SLNNIAMLEKLVESLLRDKGKLWGRVLSQKYLSNKSVLAGKYKRGDSYIWKGIVS 117
            +  N A+L K V  ++ +   L+ R++  +Y    S+L  K +R  SY W  +++
Sbjct: 1241 AKFNDALLAKQVWRMINNPNSLFARIMKARYFREDSILDAKRQRYQSYGWTSMLA 1295


>ref|NP_914522.1| unnamed protein product [Oryza sativa (japonica cultivar-group)]
          Length = 486

 Score = 54.7 bits (130), Expect = 5e-07
 Identities = 34/119 (28%), Positives = 52/119 (43%), Gaps = 1/119 (0%)

Query: 1   IGSLPLLEKNEFTFKLHLHLEYDKNIRSCIWAKGGQTHSWYLVPWCEVSCPKENGGLGLR 60
           + SLP+     F     +    D    S  W+   Q   + L  W  +   K+ GGLG+ 
Sbjct: 98  LSSLPMFMLLFFEIPRGVLQRLDYYRSSFFWSSDSQKKKYRLTKWDYIYRLKDQGGLGVL 157

Query: 61  STSLNNIAMLEKLVESLLRDKGKLWGRVLSQKYLSNKSVLAGKYKRGDSYIWKGIVSAK 119
           +  + N  +L K +  LL  +G LW  +L  KYL  K +    +K G S  W G++  K
Sbjct: 158 NLDIMNRCLLSKWLFKLLNGEG-LWQNLLRNKYLKGKPLSHMSHKPGTSQFWAGLMKVK 215


>gb|AAD03565.2| putative non-LTR retroelement reverse transcriptase [Arabidopsis
           thaliana] gi|25411819|pir||H84557 hypothetical protein
           At2g17910 [imported] - Arabidopsis thaliana
          Length = 1344

 Score = 54.3 bits (129), Expect = 7e-07
 Identities = 26/86 (30%), Positives = 41/86 (47%)

Query: 31  WAKGGQTHSWYLVPWCEVSCPKENGGLGLRSTSLNNIAMLEKLVESLLRDKGKLWGRVLS 90
           W    Q    + + W  ++ PK+ GG G +     N A+L K    +L++KG L+ RV  
Sbjct: 805 WNSMQQKRKIHWLSWQRLTLPKDQGGFGFKDLQCFNQALLAKQAWRVLQEKGSLFSRVFQ 864

Query: 91  QKYLSNKSVLAGKYKRGDSYIWKGIV 116
            +Y SN   L+       SY W+ I+
Sbjct: 865 SRYFSNSDFLSATRGSRPSYAWRSIL 890


>pir||T00833 RNA-directed DNA polymerase homolog T13L16.7 - Arabidopsis thaliana
           (fragment)
          Length = 1365

 Score = 54.3 bits (129), Expect = 7e-07
 Identities = 26/86 (30%), Positives = 41/86 (47%)

Query: 31  WAKGGQTHSWYLVPWCEVSCPKENGGLGLRSTSLNNIAMLEKLVESLLRDKGKLWGRVLS 90
           W    Q    + + W  ++ PK+ GG G +     N A+L K    +L++KG L+ RV  
Sbjct: 826 WNSMQQKRKIHWLSWQRLTLPKDQGGFGFKDLQCFNQALLAKQAWRVLQEKGSLFSRVFQ 885

Query: 91  QKYLSNKSVLAGKYKRGDSYIWKGIV 116
            +Y SN   L+       SY W+ I+
Sbjct: 886 SRYFSNSDFLSATRGSRPSYAWRSIL 911


  Database: nr
    Posted date:  Jul 5, 2005 12:34 AM
  Number of letters in database: 863,360,394
  Number of sequences in database:  2,540,612
  
Lambda     K      H
   0.318    0.137    0.431 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 214,070,180
Number of Sequences: 2540612
Number of extensions: 8136860
Number of successful extensions: 14694
Number of sequences better than 10.0: 151
Number of HSP's better than 10.0 without gapping: 131
Number of HSP's successfully gapped in prelim test: 20
Number of HSP's that attempted gapping in prelim test: 14543
Number of HSP's gapped (non-prelim): 159
length of query: 119
length of database: 863,360,394
effective HSP length: 95
effective length of query: 24
effective length of database: 622,002,254
effective search space: 14928054096
effective search space used: 14928054096
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 68 (30.8 bits)


Lotus: description of TM0248.1