BLAST2 result
BLASTP 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TM0247.1
(323 letters)
Database: nr
2,540,612 sequences; 863,360,394 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
emb|CAE03782.2| OSJNBa0063G07.6 [Oryza sativa (japonica cultivar... 84 7e-15
gb|AAX96502.1| Transposable element protein, putative [Oryza sat... 84 7e-15
gb|AAN60991.1| Putative Zea mays retrotransposon Opie-2 [Oryza s... 83 1e-14
emb|CAE04585.2| OSJNBb0006N15.2 [Oryza sativa (japonica cultivar... 83 1e-14
gb|AAM94552.1| putative polyprotein [Oryza sativa (japonica cult... 82 2e-14
ref|XP_463224.1| putative integrase [Oryza sativa (japonica cult... 82 2e-14
gb|AAP53121.1| putative retroelement [Oryza sativa (japonica cul... 82 3e-14
gb|AAP51904.1| putative copia-type pol polyprotein [Oryza sativa... 82 3e-14
gb|AAV31277.1| putative polyprotein [Oryza sativa (japonica cult... 81 4e-14
gb|AAN60494.1| Putative Zea mays retrotransposon Opie-2 [Oryza s... 80 8e-14
ref|XP_474304.1| OSJNBb0004A17.2 [Oryza sativa (japonica cultiva... 80 8e-14
ref|XP_469477.1| putative gag-pol polyprotein [Oryza sativa] gi|... 80 8e-14
ref|NP_910082.1| putative gag-pol polyprotein [Oryza sativa (jap... 80 8e-14
gb|AAU10766.1| putative polyprotein [Oryza sativa (japonica cult... 80 8e-14
gb|AAT94044.1| putative polyprotein [Oryza sativa (japonica cult... 80 8e-14
ref|NP_909542.1| putative copia-type retrotransposon protein [Or... 80 1e-13
gb|AAX95391.1| Integrase core domain, putative [Oryza sativa (ja... 80 1e-13
gb|AAP51907.1| putative gag-pol polyprotein [Oryza sativa (japon... 79 1e-13
gb|AAP52474.1| putative polyprotein [Oryza sativa (japonica cult... 79 2e-13
emb|CAD40307.2| OSJNBb0013O03.2 [Oryza sativa (japonica cultivar... 79 2e-13
>emb|CAE03782.2| OSJNBa0063G07.6 [Oryza sativa (japonica cultivar-group)]
gi|50923031|ref|XP_471876.1| OSJNBa0063G07.6 [Oryza
sativa (japonica cultivar-group)]
Length = 1539
Score = 83.6 bits (205), Expect = 7e-15
Identities = 49/177 (27%), Positives = 89/177 (49%), Gaps = 9/177 (5%)
Query: 28 HYSAKPPVFDGEKFDYCKDRIENFFLRFDTDLWDIVVYGYTRLVDEDGVKIPREKMNGDQ 87
++ K P+F+G + K ++ +W IV G+ I +
Sbjct: 6 NHVGKAPMFNGTNYSTWKIKMSTHLKAMSFHIWSIVDVGFA---------ITGTPLTEID 56
Query: 88 KKKYKDHHRARTILLNAISYEEYEKITDRESAKSIFDSLRMTHEGNEEDKETKALALIKK 147
+ + + +A L N++S EE++++++ E+A I++ L HEG E K+ K L +
Sbjct: 57 HRNLQLNAQAMNALFNSLSQEEFDRVSNLETAYEIWNKLAKIHEGTSEYKDAKLHFLKIQ 116
Query: 148 YGAFKMEPDESIEAMFSRF*MLIAGIRVLDKCYTTVDHAKKIIRSLPEKWMPLVIAL 204
Y F M P ES+ M+ R +++ ++ L YT ++ AKK++R+LPEK+ LV L
Sbjct: 117 YETFSMLPHESVNDMYGRLNVIVNDLKGLGANYTDLEVAKKMLRALPEKYETLVTML 173
>gb|AAX96502.1| Transposable element protein, putative [Oryza sativa (japonica
cultivar-group)]
Length = 655
Score = 83.6 bits (205), Expect = 7e-15
Identities = 46/156 (29%), Positives = 83/156 (52%), Gaps = 9/156 (5%)
Query: 25 LKDHYSAKPPVFDGEKFDYCKDRIENFFLRFDTDLWDIVVYGYTRLVDEDGVKIPREKMN 84
+ D +S KP VFDG F + R++++ + D D+W V + Y IP E
Sbjct: 1 MADRFSTKPHVFDGTDFSHWCSRMQSYIMAKDYDIWRKVSHPYV---------IPEEINT 51
Query: 85 GDQKKKYKDHHRARTILLNAISYEEYEKITDRESAKSIFDSLRMTHEGNEEDKETKALAL 144
K +++ + +AR ILL+ IS +Y+++ ++A I+ +L H+G KE +
Sbjct: 52 TALKLEFEQNCKARNILLSGISRSDYDRVAHLQAAHEIWIALSNFHQGTYNIKELRRGLF 111
Query: 145 IKKYGAFKMEPDESIEAMFSRF*MLIAGIRVLDKCY 180
K+Y F+M+P E+++ SRF +++ +R +D Y
Sbjct: 112 KKEYIKFEMKPGEALDDYLSRFNKILSDLRSVDSSY 147
>gb|AAN60991.1| Putative Zea mays retrotransposon Opie-2 [Oryza sativa (japonica
cultivar-group)] gi|34902324|ref|NP_912508.1| Putative
Zea mays retrotransposon Opie-2 [Oryza sativa (japonica
cultivar-group)]
Length = 2011
Score = 82.8 bits (203), Expect = 1e-14
Identities = 48/177 (27%), Positives = 89/177 (50%), Gaps = 9/177 (5%)
Query: 28 HYSAKPPVFDGEKFDYCKDRIENFFLRFDTDLWDIVVYGYTRLVDEDGVKIPREKMNGDQ 87
++ K P+F+G + K ++ +W IV G+ I +
Sbjct: 6 NHVGKAPMFNGTNYSTWKIKMSTHLKAMSFHIWSIVDVGFA---------ITGTPLTEID 56
Query: 88 KKKYKDHHRARTILLNAISYEEYEKITDRESAKSIFDSLRMTHEGNEEDKETKALALIKK 147
+ K + +A +L N++S EE++++++ E+A I++ L HE E K+ K L +
Sbjct: 57 HRNLKLNAQAMNVLFNSLSQEEFDRVSNLETAYEIWNKLAEIHESTSEYKDAKLHFLKIQ 116
Query: 148 YGAFKMEPDESIEAMFSRF*MLIAGIRVLDKCYTTVDHAKKIIRSLPEKWMPLVIAL 204
Y F M P ES+ M+ R +++ ++ L YT ++ A+K++R+LPEK+ LV L
Sbjct: 117 YETFSMLPHESVNDMYGRLNVIVNDLKGLGANYTNLEVAQKMLRALPEKYETLVTML 173
>emb|CAE04585.2| OSJNBb0006N15.2 [Oryza sativa (japonica cultivar-group)]
gi|50923653|ref|XP_472187.1| OSJNBb0006N15.2 [Oryza
sativa (japonica cultivar-group)]
Length = 1134
Score = 82.8 bits (203), Expect = 1e-14
Identities = 44/154 (28%), Positives = 81/154 (52%), Gaps = 9/154 (5%)
Query: 29 YSAKPPVFDGEKFDYCKDRIENFFLRFDTDLWDIVVYGYTRLVDEDGVKIPREKMNGDQK 88
+S KP VFDG F + R++++ + D D+W V + Y IP +K
Sbjct: 7 FSTKPHVFDGTDFSHWCSRMQSYIMAEDYDIWRKVSHAYV---------IPEAINTAAEK 57
Query: 89 KKYKDHHRARTILLNAISYEEYEKITDRESAKSIFDSLRMTHEGNEEDKETKALALIKKY 148
++ + +AR ILL+ IS +Y+++ ++A I+ +L H+G KE + K+Y
Sbjct: 58 TAFEQNCKARNILLSGISRSDYDRVAHLQTAHEIWVALSNFHQGTNNIKELRRDLFKKEY 117
Query: 149 GAFKMEPDESIEAMFSRF*MLIAGIRVLDKCYTT 182
F+M+P E+++ SRF +++ ++ +D Y T
Sbjct: 118 IKFEMKPGEALDDYLSRFNKILSDLKYVDSSYDT 151
>gb|AAM94552.1| putative polyprotein [Oryza sativa (japonica cultivar-group)]
gi|31432496|gb|AAP54118.1| putative polyprotein [Oryza
sativa (japonica cultivar-group)]
gi|37535058|ref|NP_921831.1| putative polyprotein [Oryza
sativa (japonica cultivar-group)]
Length = 1584
Score = 82.4 bits (202), Expect = 2e-14
Identities = 48/177 (27%), Positives = 89/177 (50%), Gaps = 9/177 (5%)
Query: 28 HYSAKPPVFDGEKFDYCKDRIENFFLRFDTDLWDIVVYGYTRLVDEDGVKIPREKMNGDQ 87
++ K P+F+G + K ++ +W IV G+ I +
Sbjct: 6 NHVGKAPIFNGTNYSTWKIKMSTHLKAMSFHIWSIVYVGFA---------ITGTPLTEID 56
Query: 88 KKKYKDHHRARTILLNAISYEEYEKITDRESAKSIFDSLRMTHEGNEEDKETKALALIKK 147
+ + + +A L N++S EE++++++ E+A I++ L HEG E K+ K L +
Sbjct: 57 HRNLQLNAQAMNALFNSLSQEEFDRVSNLETAYEIWNKLAEIHEGTSEYKDAKLHFLKIQ 116
Query: 148 YGAFKMEPDESIEAMFSRF*MLIAGIRVLDKCYTTVDHAKKIIRSLPEKWMPLVIAL 204
Y F M P ES+ M+ R +++ ++ L YT ++ A+K++R+LPEK+ LV L
Sbjct: 117 YETFYMLPHESVNDMYGRLNVIVNDLKGLGANYTDLEVAQKMLRALPEKYETLVTML 173
>ref|XP_463224.1| putative integrase [Oryza sativa (japonica cultivar-group)]
gi|40737034|gb|AAR89047.1| putative integrase [Oryza
sativa (japonica cultivar-group)]
Length = 1507
Score = 82.0 bits (201), Expect = 2e-14
Identities = 44/152 (28%), Positives = 80/152 (51%), Gaps = 9/152 (5%)
Query: 29 YSAKPPVFDGEKFDYCKDRIENFFLRFDTDLWDIVVYGYTRLVDEDGVKIPREKMNGDQK 88
+S KP VFDG F + R++++ + D D+W V + Y IP +K
Sbjct: 7 FSTKPHVFDGTDFSHWCSRMQSYIMAEDYDIWRKVSHPYV---------IPEAINTAAEK 57
Query: 89 KKYKDHHRARTILLNAISYEEYEKITDRESAKSIFDSLRMTHEGNEEDKETKALALIKKY 148
++ + +AR ILL+ IS +Y+++ ++A I+ +L H+G KE + K+Y
Sbjct: 58 TAFEQNCKARNILLSGISRSDYDRVAHLQTAHEIWTTLSNFHQGTNNIKELRRDLFKKEY 117
Query: 149 GAFKMEPDESIEAMFSRF*MLIAGIRVLDKCY 180
F+M+P E+++ SRF +++ +R +D Y
Sbjct: 118 IKFEMKPGEALDDYLSRFNKILSDLRSVDSSY 149
>gb|AAP53121.1| putative retroelement [Oryza sativa (japonica cultivar-group)]
gi|37533064|ref|NP_920834.1| putative retroelement
[Oryza sativa (japonica cultivar-group)]
gi|15451594|gb|AAK98718.1| Putative retroelement [Oryza
sativa]
Length = 1660
Score = 81.6 bits (200), Expect = 3e-14
Identities = 43/154 (27%), Positives = 80/154 (51%), Gaps = 9/154 (5%)
Query: 29 YSAKPPVFDGEKFDYCKDRIENFFLRFDTDLWDIVVYGYTRLVDEDGVKIPREKMNGDQK 88
+S KP VFDG F + R++++ + D D+W V + Y IP +K
Sbjct: 151 FSTKPHVFDGTDFSHWCSRMQSYIMAEDYDIWRKVSHSYV---------IPEAINTAAEK 201
Query: 89 KKYKDHHRARTILLNAISYEEYEKITDRESAKSIFDSLRMTHEGNEEDKETKALALIKKY 148
++ + ++ ILL+ IS +Y+++ ++A I+ +L H+G KE + K+Y
Sbjct: 202 TAFEQNCKSHNILLSGISRSDYDRVAHLQTAHEIWTALSNFHQGTNNIKELRRDLFKKEY 261
Query: 149 GAFKMEPDESIEAMFSRF*MLIAGIRVLDKCYTT 182
F+M+P E+++ SRF +++ +R +D Y T
Sbjct: 262 IKFEMKPGEALDDYLSRFNKILSDLRSIDSSYDT 295
>gb|AAP51904.1| putative copia-type pol polyprotein [Oryza sativa (japonica
cultivar-group)] gi|37530630|ref|NP_919617.1| putative
copia-type pol polyprotein [Oryza sativa (japonica
cultivar-group)] gi|20042887|gb|AAM08715.1| Putative
copia-type pol polyprotein [Oryza sativa]
gi|16924049|gb|AAL31661.1| Putative copia-type pol
polyprotein [Oryza sativa]
Length = 998
Score = 81.6 bits (200), Expect = 3e-14
Identities = 44/152 (28%), Positives = 81/152 (52%), Gaps = 9/152 (5%)
Query: 29 YSAKPPVFDGEKFDYCKDRIENFFLRFDTDLWDIVVYGYTRLVDEDGVKIPREKMNGDQK 88
+S KP VFDG F + R++++ + D D+W V + Y IP K
Sbjct: 7 FSTKPHVFDGTDFSHWCSRMQSYIMAEDYDIWRKVSHPYV---------IPEVINTAAAK 57
Query: 89 KKYKDHHRARTILLNAISYEEYEKITDRESAKSIFDSLRMTHEGNEEDKETKALALIKKY 148
K++ + +AR ILL+ IS +Y+++ ++A I+++L H+G KE + K+Y
Sbjct: 58 TKFEQNCKARNILLSGISRSDYDRVAHFQTAHEIWNALSNFHQGTNNIKELRRAIFKKEY 117
Query: 149 GAFKMEPDESIEAMFSRF*MLIAGIRVLDKCY 180
F+++P E+++ SRF +++ +R +D Y
Sbjct: 118 IKFEIKPGEALDDYLSRFNKILSDLRSVDFSY 149
>gb|AAV31277.1| putative polyprotein [Oryza sativa (japonica cultivar-group)]
Length = 1577
Score = 81.3 bits (199), Expect = 4e-14
Identities = 49/182 (26%), Positives = 89/182 (47%), Gaps = 21/182 (11%)
Query: 29 YSAKPPVFDGEKFDYCKDRIENFFLRFDTDLWDIVVYGYTRL------VDEDGVKIPREK 82
+ K P+F+G + K ++ +W IV G+ +D +++ +
Sbjct: 7 HEGKAPMFNGTNYSTWKIKMSTHLKAMSFHIWSIVDVGFAITGTPLMEIDHRNLQLNAQA 66
Query: 83 MNGDQKKKYKDHHRARTILLNAISYEEYEKITDRESAKSIFDSLRMTHEGNEEDKETKAL 142
MN L N++S EE++++++ E+A I++ L HEG E K+ K
Sbjct: 67 MNA---------------LFNSLSQEEFDRVSNLETAYEIWNKLAEIHEGTSEYKDAKLH 111
Query: 143 ALIKKYGAFKMEPDESIEAMFSRF*MLIAGIRVLDKCYTTVDHAKKIIRSLPEKWMPLVI 202
L +Y F M P ES+ M+ R +++ ++ L YT ++ A+K++R+LPEK+ LV
Sbjct: 112 FLKIQYETFSMLPHESVNDMYGRLNVIVNDLKGLGANYTDLEVAQKMLRALPEKYETLVT 171
Query: 203 AL 204
L
Sbjct: 172 ML 173
>gb|AAN60494.1| Putative Zea mays retrotransposon Opie-2 [Oryza sativa (japonica
cultivar-group)] gi|34902378|ref|NP_912535.1| Putative
Zea mays retrotransposon Opie-2 [Oryza sativa (japonica
cultivar-group)]
Length = 2145
Score = 80.1 bits (196), Expect = 8e-14
Identities = 51/169 (30%), Positives = 88/169 (51%), Gaps = 8/169 (4%)
Query: 25 LKDHYSAKPPVFDGEKFDYCKDRIENFFLRFDTDLWDIVVYGYTRLVDEDGVKIPREKMN 84
+++ YSAKP VFDG F K R+E + ++W+ V YT V +D P
Sbjct: 1 MEEKYSAKPFVFDGHNFVIWKARMEAYLQSQGHNVWNKVKSPYT--VPDDADITPANMAQ 58
Query: 85 GDQKKKYKDHHRARTILLNAISYEEYEKITDRESAKSIFDSLRMTHEGNEEDKETKALAL 144
D ++RAR ++ IS E+ ++ +SA ++ +L HEGN + + +
Sbjct: 59 VDF------NYRARNAIIGGISSGEFNRVQHHKSAHDMWTALCNFHEGNNDIQLVRQNQF 112
Query: 145 IKKYGAFKMEPDESIEAMFSRF*MLIAGIRVLDKCYTTVDHAKKIIRSL 193
K+Y F+M P ESI++ F RF +I+ +R + K ++ D+A+ ++ L
Sbjct: 113 HKEYQRFEMHPGESIDSYFKRFGEIISKLRSVGKEFSDNDNARHLLNCL 161
>ref|XP_474304.1| OSJNBb0004A17.2 [Oryza sativa (japonica cultivar-group)]
gi|32488723|emb|CAE03600.1| OSJNBb0004A17.2 [Oryza
sativa (japonica cultivar-group)]
Length = 1877
Score = 80.1 bits (196), Expect = 8e-14
Identities = 51/169 (30%), Positives = 88/169 (51%), Gaps = 8/169 (4%)
Query: 25 LKDHYSAKPPVFDGEKFDYCKDRIENFFLRFDTDLWDIVVYGYTRLVDEDGVKIPREKMN 84
+++ YSAKP VFDG F K R+E + ++W+ V YT V +D P
Sbjct: 1 MEEKYSAKPFVFDGHNFVIWKARMEAYLQSQGHNVWNKVKSPYT--VPDDADITPANMAQ 58
Query: 85 GDQKKKYKDHHRARTILLNAISYEEYEKITDRESAKSIFDSLRMTHEGNEEDKETKALAL 144
D ++RAR ++ IS E+ ++ +SA ++ +L HEGN + + +
Sbjct: 59 VDF------NYRARNAIIGGISSGEFNRVQHHKSAHDMWTALCNFHEGNNDIQLVRQNQF 112
Query: 145 IKKYGAFKMEPDESIEAMFSRF*MLIAGIRVLDKCYTTVDHAKKIIRSL 193
K+Y F+M P ESI++ F RF +I+ +R + K ++ D+A+ ++ L
Sbjct: 113 HKEYQRFEMHPGESIDSYFKRFGEIISKLRSVGKEFSDNDNARHLLNCL 161
>ref|XP_469477.1| putative gag-pol polyprotein [Oryza sativa]
gi|13937301|gb|AAK50132.1| putative gag-pol polyprotein
[Oryza sativa]
Length = 1700
Score = 80.1 bits (196), Expect = 8e-14
Identities = 47/177 (26%), Positives = 88/177 (49%), Gaps = 9/177 (5%)
Query: 28 HYSAKPPVFDGEKFDYCKDRIENFFLRFDTDLWDIVVYGYTRLVDEDGVKIPREKMNGDQ 87
++ K P+F+G + K ++ +W IV G+ I +
Sbjct: 6 NHVGKAPMFNGTNYSTWKIKMSTHLKAMSFHIWSIVDVGFA---------ITGTPLTEID 56
Query: 88 KKKYKDHHRARTILLNAISYEEYEKITDRESAKSIFDSLRMTHEGNEEDKETKALALIKK 147
+ + + +A L N++S EE++++++ E+A I++ L HEG E K+ K L +
Sbjct: 57 HRNLQLNAQAMNALFNSLSQEEFDRVSNLETAYEIWNKLAEIHEGTSEYKDAKLHFLKIQ 116
Query: 148 YGAFKMEPDESIEAMFSRF*MLIAGIRVLDKCYTTVDHAKKIIRSLPEKWMPLVIAL 204
Y F M P ES+ M+ R +++ ++ L YT ++ A+K++R+LPEK+ V L
Sbjct: 117 YETFSMLPHESVNDMYGRLNVIVNDLKGLGANYTDLEVAQKMLRALPEKYETFVTML 173
>ref|NP_910082.1| putative gag-pol polyprotein [Oryza sativa (japonica
cultivar-group)] gi|28269414|gb|AAO37957.1| putative
gag-pol polyprotein [Oryza sativa (japonica
cultivar-group)]
Length = 1969
Score = 80.1 bits (196), Expect = 8e-14
Identities = 51/169 (30%), Positives = 88/169 (51%), Gaps = 8/169 (4%)
Query: 25 LKDHYSAKPPVFDGEKFDYCKDRIENFFLRFDTDLWDIVVYGYTRLVDEDGVKIPREKMN 84
+++ YSAKP VFDG F K R+E + ++W+ V YT V +D P
Sbjct: 1 MEEKYSAKPFVFDGHNFVIWKARMEAYLQSQGHNVWNKVKSPYT--VPDDADITPANMAQ 58
Query: 85 GDQKKKYKDHHRARTILLNAISYEEYEKITDRESAKSIFDSLRMTHEGNEEDKETKALAL 144
D ++RAR ++ IS E+ ++ +SA ++ +L HEGN + + +
Sbjct: 59 VDF------NYRARNAIIGGISSGEFNRVQHHKSAHDMWTALCNFHEGNNDIQLVRQNQF 112
Query: 145 IKKYGAFKMEPDESIEAMFSRF*MLIAGIRVLDKCYTTVDHAKKIIRSL 193
K+Y F+M P ESI++ F RF +I+ +R + K ++ D+A+ ++ L
Sbjct: 113 HKEYQRFEMHPGESIDSYFKRFGEIISKLRSVGKEFSDNDNARHLLNCL 161
>gb|AAU10766.1| putative polyprotein [Oryza sativa (japonica cultivar-group)]
Length = 1282
Score = 80.1 bits (196), Expect = 8e-14
Identities = 43/152 (28%), Positives = 80/152 (52%), Gaps = 9/152 (5%)
Query: 29 YSAKPPVFDGEKFDYCKDRIENFFLRFDTDLWDIVVYGYTRLVDEDGVKIPREKMNGDQK 88
+S KP VFDG F + R++++ + D D+W + + Y IP +K
Sbjct: 7 FSTKPLVFDGTDFSHWCSRMQSYIMAEDYDIWRKISHPYV---------IPEAINIAAKK 57
Query: 89 KKYKDHHRARTILLNAISYEEYEKITDRESAKSIFDSLRMTHEGNEEDKETKALALIKKY 148
++ + +AR ILL+ IS +Y+++ ++A I+ +L H+G KE + K+Y
Sbjct: 58 SDFEQNCKARNILLSGISRSDYDRVAHLQTAHEIWTALSNFHQGTNNIKELRRDLFKKEY 117
Query: 149 GAFKMEPDESIEAMFSRF*MLIAGIRVLDKCY 180
F+M+P E+++ SRF +++ +R +D Y
Sbjct: 118 IKFEMKPGEALDDYLSRFNKILSDLRSVDSSY 149
>gb|AAT94044.1| putative polyprotein [Oryza sativa (japonica cultivar-group)]
gi|50878403|gb|AAT85178.1| putative polyprotein [Oryza
sativa (japonica cultivar-group)]
Length = 1398
Score = 80.1 bits (196), Expect = 8e-14
Identities = 44/152 (28%), Positives = 79/152 (51%), Gaps = 9/152 (5%)
Query: 29 YSAKPPVFDGEKFDYCKDRIENFFLRFDTDLWDIVVYGYTRLVDEDGVKIPREKMNGDQK 88
+S KP VFDG F + R++++ + D D+W V + Y IP +K
Sbjct: 7 FSTKPHVFDGTDFSHWYSRMQSYIMAEDYDIWRKVSHPYV---------IPETINTAAEK 57
Query: 89 KKYKDHHRARTILLNAISYEEYEKITDRESAKSIFDSLRMTHEGNEEDKETKALALIKKY 148
++ + +AR ILL+ IS +Y ++ ++A I+ +L H+G KE + K+Y
Sbjct: 58 TAFEQNCKARNILLSGISRLDYNRVAHLQTAHEIWTALSNFHQGTNNIKELRRDLFKKEY 117
Query: 149 GAFKMEPDESIEAMFSRF*MLIAGIRVLDKCY 180
F+M+P E+++ SRF +++ +R +D Y
Sbjct: 118 IKFEMKPREALDDYLSRFNKILSDLRSVDSSY 149
>ref|NP_909542.1| putative copia-type retrotransposon protein [Oryza sativa (japonica
cultivar-group)] gi|27764656|gb|AAO23081.1| putative
copia-type retrotransposon protein [Oryza sativa
(japonica cultivar-group)]
Length = 1183
Score = 79.7 bits (195), Expect = 1e-13
Identities = 47/177 (26%), Positives = 87/177 (48%), Gaps = 9/177 (5%)
Query: 28 HYSAKPPVFDGEKFDYCKDRIENFFLRFDTDLWDIVVYGYTRLVDEDGVKIPREKMNGDQ 87
++ K P+F+G + K ++ +W IV G+ I +
Sbjct: 6 NHVGKAPMFNGTNYSTWKIKMSTHLKAMSFHIWSIVDVGFA---------ITGTPLTEID 56
Query: 88 KKKYKDHHRARTILLNAISYEEYEKITDRESAKSIFDSLRMTHEGNEEDKETKALALIKK 147
+ + + +A L N++S EE++++++ ES I++ L HEG E K+ K L +
Sbjct: 57 HRNLQLNAQAMNALFNSLSQEEFDRVSNLESTYEIWNKLAEIHEGTSEYKDAKLHFLEIQ 116
Query: 148 YGAFKMEPDESIEAMFSRF*MLIAGIRVLDKCYTTVDHAKKIIRSLPEKWMPLVIAL 204
Y F M P ES+ M+ R +++ ++ L Y ++ A+K++R+LPEK+ LV L
Sbjct: 117 YETFSMLPHESVNDMYGRLNVIVNDLKGLGANYNVLEVAQKMLRALPEKYETLVTML 173
>gb|AAX95391.1| Integrase core domain, putative [Oryza sativa (japonica
cultivar-group)]
Length = 1584
Score = 79.7 bits (195), Expect = 1e-13
Identities = 44/152 (28%), Positives = 79/152 (51%), Gaps = 9/152 (5%)
Query: 29 YSAKPPVFDGEKFDYCKDRIENFFLRFDTDLWDIVVYGYTRLVDEDGVKIPREKMNGDQK 88
+S KP VFDG F + R++++ + D D+W V + Y IP +K
Sbjct: 7 FSTKPHVFDGTDFSHWCSRMQSYIMAEDYDIWRKVSHPYV---------IPEAINTTAEK 57
Query: 89 KKYKDHHRARTILLNAISYEEYEKITDRESAKSIFDSLRMTHEGNEEDKETKALALIKKY 148
++ + +AR ILL+ IS +Y+++ +A I+++L H+G KE K+Y
Sbjct: 58 TAFEQNCKARNILLSGISRSDYDRVAHFRTAHEIWNALSNFHQGTNNIKELHRDIFKKEY 117
Query: 149 GAFKMEPDESIEAMFSRF*MLIAGIRVLDKCY 180
F+M+P E+++ SRF +++ +R +D Y
Sbjct: 118 IKFEMKPGEALDDYLSRFNKILSDLRSVDSSY 149
>gb|AAP51907.1| putative gag-pol polyprotein [Oryza sativa (japonica
cultivar-group)] gi|37530636|ref|NP_919620.1| putative
gag-pol polyprotein [Oryza sativa (japonica
cultivar-group)] gi|20042890|gb|AAM08718.1| Putative
gag-pol polyprotein [Oryza sativa]
Length = 1627
Score = 79.3 bits (194), Expect = 1e-13
Identities = 50/181 (27%), Positives = 91/181 (49%), Gaps = 17/181 (9%)
Query: 28 HYSAKPPVFDGEKFDYCKDRIENFFLRFDTDLWDIVVYGY----TRLVDEDGVKIPREKM 83
++ K P+F+G + K ++ +W IV G+ T L + D + ++
Sbjct: 6 NHVGKAPMFNGTNYSTWKIKMSTHLKAMSFHIWSIVDVGFAITGTPLTEIDHCNL---QL 62
Query: 84 NGDQKKKYKDHHRARTILLNAISYEEYEKITDRESAKSIFDSLRMTHEGNEEDKETKALA 143
N +A L N+ S EE++++++ E+A I++ L HEG E K+ K
Sbjct: 63 NA----------QAMNALFNSFSQEEFDRVSNLETAYEIWNKLAEIHEGTSEYKDAKLHF 112
Query: 144 LIKKYGAFKMEPDESIEAMFSRF*MLIAGIRVLDKCYTTVDHAKKIIRSLPEKWMPLVIA 203
L +Y F M P ES+ M+ R +++ ++ L YT ++ A+K++R+LP+K+ LV
Sbjct: 113 LKIQYETFSMLPHESVNDMYGRLNVIVNDLKGLGATYTDLEVAQKMLRALPKKYETLVTM 172
Query: 204 L 204
L
Sbjct: 173 L 173
>gb|AAP52474.1| putative polyprotein [Oryza sativa (japonica cultivar-group)]
gi|37531770|ref|NP_920187.1| putative polyprotein [Oryza
sativa (japonica cultivar-group)]
gi|18657016|gb|AAL78103.1| Putative polyprotein [Oryza
sativa]
Length = 669
Score = 79.0 bits (193), Expect = 2e-13
Identities = 43/152 (28%), Positives = 81/152 (53%), Gaps = 9/152 (5%)
Query: 29 YSAKPPVFDGEKFDYCKDRIENFFLRFDTDLWDIVVYGYTRLVDEDGVKIPREKMNGDQK 88
+S KP VF+G F + R++++ + D D+W V + Y IP +K
Sbjct: 7 FSTKPHVFNGTDFSHWCSRMQSYIMAEDYDIWRKVSHAYV---------IPEVINTAAEK 57
Query: 89 KKYKDHHRARTILLNAISYEEYEKITDRESAKSIFDSLRMTHEGNEEDKETKALALIKKY 148
++ + +AR ILL+ IS +Y+++ E+A I+++L+ H+G KE + K+Y
Sbjct: 58 TAFEQNCKARNILLSGISRSDYDRVPHLETAHEIWNALKNFHQGTNNIKELRRDLFKKEY 117
Query: 149 GAFKMEPDESIEAMFSRF*MLIAGIRVLDKCY 180
F+M+ E+++ SRF +++ +R +D Y
Sbjct: 118 IKFEMKYREALDDYLSRFNKILSDLRSVDSSY 149
>emb|CAD40307.2| OSJNBb0013O03.2 [Oryza sativa (japonica cultivar-group)]
Length = 1028
Score = 78.6 bits (192), Expect = 2e-13
Identities = 43/152 (28%), Positives = 79/152 (51%), Gaps = 9/152 (5%)
Query: 29 YSAKPPVFDGEKFDYCKDRIENFFLRFDTDLWDIVVYGYTRLVDEDGVKIPREKMNGDQK 88
+S KP VFDG F + R++++ + D D+W V + Y IP +K
Sbjct: 7 FSTKPHVFDGTDFSHWCSRMQSYIMAEDYDIWRKVSHPYV---------IPEAINTTTEK 57
Query: 89 KKYKDHHRARTILLNAISYEEYEKITDRESAKSIFDSLRMTHEGNEEDKETKALALIKKY 148
++ + +AR ILL+ IS +Y+++ ++A I+ +L H+ KE + K+Y
Sbjct: 58 TAFEQNCKARNILLSGISRSDYDRVAHLQTAHEIWTTLSNFHQETNNIKELRRDLFKKEY 117
Query: 149 GAFKMEPDESIEAMFSRF*MLIAGIRVLDKCY 180
F+M+P E+++ SRF +++ +R +D Y
Sbjct: 118 IKFEMKPGEALDDYLSRFNKILSDLRSVDSSY 149
Database: nr
Posted date: Jul 5, 2005 12:34 AM
Number of letters in database: 863,360,394
Number of sequences in database: 2,540,612
Lambda K H
0.343 0.150 0.475
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 476,577,864
Number of Sequences: 2540612
Number of extensions: 18037827
Number of successful extensions: 85119
Number of sequences better than 10.0: 206
Number of HSP's better than 10.0 without gapping: 167
Number of HSP's successfully gapped in prelim test: 39
Number of HSP's that attempted gapping in prelim test: 84819
Number of HSP's gapped (non-prelim): 230
length of query: 323
length of database: 863,360,394
effective HSP length: 128
effective length of query: 195
effective length of database: 538,162,058
effective search space: 104941601310
effective search space used: 104941601310
T: 11
A: 40
X1: 15 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 38 (21.5 bits)
S2: 75 (33.5 bits)
Lotus: description of TM0247.1