BLAST2 result
BLASTP 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TM0240.16
(1549 letters)
Database: nr
2,540,612 sequences; 863,360,394 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAO73527.1| gag-pol polyprotein [Glycine max] 961 0.0
gb|AAO73521.1| gag-pol polyprotein [Glycine max] 959 0.0
gb|AAO73523.1| gag-pol polyprotein [Glycine max] 955 0.0
gb|AAO73529.1| gag-pol polyprotein [Glycine max] 954 0.0
gb|AAC49502.1| Pol [Zea mays] gi|7489803|pir||T04112 pol protein... 942 0.0
gb|AAC64917.1| gag-pol polyprotein [Glycine max] 942 0.0
gb|AAO73525.1| gag-pol polyprotein [Glycine max] 942 0.0
gb|AAN60494.1| Putative Zea mays retrotransposon Opie-2 [Oryza s... 934 0.0
ref|XP_474304.1| OSJNBb0004A17.2 [Oryza sativa (japonica cultiva... 934 0.0
ref|NP_910082.1| putative gag-pol polyprotein [Oryza sativa (jap... 934 0.0
ref|NP_909107.1| unnamed protein product [Oryza sativa (japonica... 931 0.0
gb|AAG52949.1| gag/pol polyprotein [Arabidopsis thaliana] 914 0.0
gb|AAN60991.1| Putative Zea mays retrotransposon Opie-2 [Oryza s... 890 0.0
gb|AAV31277.1| putative polyprotein [Oryza sativa (japonica cult... 883 0.0
emb|CAE03782.2| OSJNBa0063G07.6 [Oryza sativa (japonica cultivar... 863 0.0
gb|AAW57789.1| putative polyprotein [Oryza sativa (japonica cult... 852 0.0
ref|NP_912905.1| unnamed protein product [Oryza sativa (japonica... 843 0.0
ref|XP_468929.1| putative polyprotein [Oryza sativa (japonica cu... 832 0.0
gb|AAP94592.1| retrotransposon Opie-2 [Zea mays] 761 0.0
gb|AAD50001.1| Hypothetical protein [Arabidopsis thaliana] gi|25... 736 0.0
>gb|AAO73527.1| gag-pol polyprotein [Glycine max]
Length = 1576
Score = 961 bits (2485), Expect = 0.0
Identities = 488/1006 (48%), Positives = 669/1006 (65%), Gaps = 10/1006 (0%)
Query: 544 LLQTSYAAQLRHLSWYLDSGCSRHMTGTRSIFQKLTPLKSGGDVGFGGNQKGKIIGKGSI 603
++ TS A + WYLDSGCSRHMTG + + P S V FG KGKIIG G +
Sbjct: 549 VVHTSLRASAKE-DWYLDSGCSRHMTGVKEFLLNIEPC-STSYVTFGDGSKGKIIGMGKL 606
Query: 604 GDGKTPVINDVLLVEGLFHNLLSISQIADKGYDVIFNQTGCKAVSQTDGSVLFSGKRKND 663
P +N VLLV+GL NL+SISQ+ D+G++V F ++ C V+ VL G R D
Sbjct: 607 VHDGLPSLNKVLLVKGLTANLISISQLCDEGFNVNFTKSEC-LVTNEKSEVLMKGSRSKD 665
Query: 664 IYKIRSSELLSQKVKCLMSVNDEQWIWHRRLGHASLRKISQLSKLNLVRGLPHLKYSSEA 723
+ + + S CL S DE IWH+R GH LR + ++ VRG+P+LK
Sbjct: 666 NCYLWTPQETSYSSTCLSSKEDEVRIWHQRFGHLHLRGMKKIIDKGAVRGIPNLKIEEGR 725
Query: 724 LCEACQKGKFTKKPFKAKNVVSTTRPLELLHIDLFGPVKTESIGGKKYELVIVDDYSRWT 783
+C CQ GK K + +T+R LELLH+DL GP++ ES+GGK+Y V+VDD+SR+T
Sbjct: 726 ICGECQIGKQVKMSHQKLRHQTTSRVLELLHMDLMGPMQVESLGGKRYAYVVVDDFSRFT 785
Query: 784 WVKFLRHKDETHTMFTNFITQVQKEFQSSVITVRSDHGGEFENKAFEDLFNSQGISHNFS 843
WV F+R K ET +F ++Q+E + +RSDHG EFEN F + S+GI+H FS
Sbjct: 786 WVNFIREKSETFEVFKELSLRLQREKDCVIKRIRSDHGREFENSRFTEFCTSEGITHEFS 845
Query: 844 CPRTPQQNGVVERKNITLQEMARTMMQESSMAKHFWAEAINTACYIQNRISIRPILEKTP 903
TPQQNG+VERKN TLQE AR M+ + + WAEA+NTACYI NR+++R T
Sbjct: 846 AAITPQQNGIVERKNRTLQEAARVMLHAKELPYNLWAEAMNTACYIHNRVTLRRGTPTTL 905
Query: 904 YELCKGRQPDISYFHPFGSTCFMLNTKEQLGKFDSKALKCYFLGYSERSKGFRIYNIIHQ 963
YE+ KGR+P + +FH FGS C++L +EQ K D K+ FLGYS S+ +R++N +
Sbjct: 906 YEIWKGRKPSVKHFHIFGSPCYILADREQRRKMDPKSDAGIFLGYSTNSRAYRVFNSRTR 965
Query: 964 TVEESIQIRFDDKLGSEKSKLFERFADLSIDCSEANQPIKSPEDVAPEAEASEDFPTTSD 1023
TV ESI + DD + K + E L + ++A KS E+ A+++
Sbjct: 966 TVMESINVVVDDLSPARKKDVEEDVRTLGDNVADA---AKSGENAENSDSATDESNINQP 1022
Query: 1024 PLQKKKRIVASHPEELIIGNKDAPVRTRSMLKPSEETLLSLKGFVSLIEPKSVDEALEDK 1083
+ RI HP+ELIIG+ + V TRS E ++S FVS IEPK+V EAL D+
Sbjct: 1023 DKRSSTRIQKMHPKELIIGDPNRGVTTRSR----EVEIVSNSCFVSKIEPKNVKEALTDE 1078
Query: 1084 GWIQAMQEELDQFTKNDVWTLMPKPKGFHVIGTKWVFRNKLNEKGEVTRNKARLVAQGYS 1143
WI AMQEEL+QF +N+VW L+P+P+G +VIGTKW+F+NK NE+G +TRNKARLVAQGY+
Sbjct: 1079 FWINAMQEELEQFKRNEVWELVPRPEGTNVIGTKWIFKNKTNEEGVITRNKARLVAQGYT 1138
Query: 1144 QQEGIDYTETFAPVARLEAIRLLISFSVNHNIILHQMDVKSAFLNGYISEEVYVKQPPGF 1203
Q EG+D+ ETFAPVARLE+IRLL+ + L+QMDVKSAFLNGY++EEVYV+QP GF
Sbjct: 1139 QIEGVDFDETFAPVARLESIRLLLGVACILKFKLYQMDVKSAFLNGYLNEEVYVEQPKGF 1198
Query: 1204 EDNKHPEHVYKLKKSLYGLKQAPRAWYERLSSFLLQNEFVRGKGDNTLFCRTYKNDILIV 1263
D HP+HVY+LKK+LYGLKQAPRAWYERL+ FL Q + +G D TLF + +++I
Sbjct: 1199 ADPTHPDHVYRLKKALYGLKQAPRAWYERLTEFLTQQGYRKGGIDKTLFVKQDAENLMIA 1258
Query: 1264 QIYVDDIIFGSANPSLCKEFSKLMQAEFEMSMMGELKYFLGIQIDQRPGVTYIHQKKYTL 1323
QIYVDDI+FG + + + F + MQ+EFEMS++GEL YFLG+Q+ Q ++ Q +Y
Sbjct: 1259 QIYVDDIVFGGMSNEMLRHFVQQMQSEFEMSLVGELTYFLGLQVKQMEDSIFLSQSRYAK 1318
Query: 1324 ELLKKFNMSDCNISKTPMHPTCILEKEEVSSKVCQKLYRGMIGSLLYLTASRPDILFSVH 1383
++KKF M + + +TP L K+E + V Q LYR MIGSLLYLTASRPDI ++V
Sbjct: 1319 NIVKKFGMENASHKRTPAPTHLKLSKDEAGTSVDQSLYRSMIGSLLYLTASRPDITYAVG 1378
Query: 1384 LCARFQSDPRETHLTAVKRILKYLKGTTNLGLMYRKTSEYTLSGFCDADFAGDRVERKST 1443
+CAR+Q++P+ +HLT VKRILKY+ GT++ G+MY S L G+CDAD+AG +RKST
Sbjct: 1379 VCARYQANPKISHLTQVKRILKYVNGTSDYGIMYCHCSNPMLVGYCDADWAGSADDRKST 1438
Query: 1444 SGSCHFLGSNLVTWSSKRQNTIALSTAEAEYVSAATCCTQTIWMKNHLEDYGLSLKKVPI 1503
SG C +LG+NL++W SK+QN ++LSTAEAEY++A + C+Q +WMK L++Y + + +
Sbjct: 1439 SGGCFYLGNNLISWFSKKQNCVSLSTAEAEYIAAGSSCSQLVWMKQMLKEYNVEQDVMTL 1498
Query: 1504 YCDNTAAISLSKNPILHSRAKHIEVKYHYIRDHVQKGTLSLEYVDT 1549
YCDN +AI++SKNP+ HSR KHI++++HYIRD V ++L++VDT
Sbjct: 1499 YCDNMSAINISKNPVQHSRTKHIDIRHHYIRDLVDDKVITLKHVDT 1544
>gb|AAO73521.1| gag-pol polyprotein [Glycine max]
Length = 1574
Score = 959 bits (2480), Expect = 0.0
Identities = 487/1006 (48%), Positives = 666/1006 (65%), Gaps = 10/1006 (0%)
Query: 544 LLQTSYAAQLRHLSWYLDSGCSRHMTGTRSIFQKLTPLKSGGDVGFGGNQKGKIIGKGSI 603
++ TS A + WYLDSGCSRHMTG + + P S V FG KGKIIG G +
Sbjct: 547 VVHTSLRASAKE-DWYLDSGCSRHMTGVKEFLLNIEPC-STSYVTFGDGSKGKIIGMGKL 604
Query: 604 GDGKTPVINDVLLVEGLFHNLLSISQIADKGYDVIFNQTGCKAVSQTDGSVLFSGKRKND 663
P +N VLLV+GL NL+SISQ+ D+G++V F ++ C V+ VL G R D
Sbjct: 605 VHDGLPSLNKVLLVKGLTANLISISQLCDEGFNVNFTKSEC-LVTNEKSEVLMKGSRSKD 663
Query: 664 IYKIRSSELLSQKVKCLMSVNDEQWIWHRRLGHASLRKISQLSKLNLVRGLPHLKYSSEA 723
+ + + S CL S DE IWH+R GH LR + ++ VRG+P+LK
Sbjct: 664 NCYLWTPQETSYSSTCLSSKEDEVRIWHQRFGHLHLRGMKKIIDKGAVRGIPNLKIEEGR 723
Query: 724 LCEACQKGKFTKKPFKAKNVVSTTRPLELLHIDLFGPVKTESIGGKKYELVIVDDYSRWT 783
+C CQ GK K + +T+R LELLH+DL GP++ ES+GGK+Y V+VDD+SR+T
Sbjct: 724 ICGECQIGKQVKMSHQKLQHQTTSRVLELLHMDLMGPMQVESLGGKRYAYVVVDDFSRFT 783
Query: 784 WVKFLRHKDETHTMFTNFITQVQKEFQSSVITVRSDHGGEFENKAFEDLFNSQGISHNFS 843
WVKF+R K ET +F ++Q+E + +RSDHG EFEN + S+GI+H FS
Sbjct: 784 WVKFIREKSETFEVFKELSLRLQREKDCVIKRIRSDHGREFENSRLTEFCTSEGITHEFS 843
Query: 844 CPRTPQQNGVVERKNITLQEMARTMMQESSMAKHFWAEAINTACYIQNRISIRPILEKTP 903
TPQQNG+VERKN TLQE AR M+ + + WAEA+NTACYI NR+++R T
Sbjct: 844 AAITPQQNGIVERKNRTLQEAARVMLHAKELPYNLWAEAMNTACYIHNRVTLRRGTPTTL 903
Query: 904 YELCKGRQPDISYFHPFGSTCFMLNTKEQLGKFDSKALKCYFLGYSERSKGFRIYNIIHQ 963
YE+ KGR+P + +FH FGS C++L +EQ K D K+ FLGYS S+ +R++N +
Sbjct: 904 YEIWKGRKPSVKHFHIFGSPCYILADREQRRKMDPKSDAGIFLGYSTNSRAYRVFNSRTR 963
Query: 964 TVEESIQIRFDDKLGSEKSKLFERFADLSIDCSEANQPIKSPEDVAPEAEASEDFPTTSD 1023
TV ESI + DD + K + E D+ KS E+ A+++
Sbjct: 964 TVMESINVVVDDLSPARKKDVEE---DVRTSGDNVADAAKSGENAENSDSATDESNINQP 1020
Query: 1024 PLQKKKRIVASHPEELIIGNKDAPVRTRSMLKPSEETLLSLKGFVSLIEPKSVDEALEDK 1083
+ RI HP+ELIIG+ + V TRS E ++S FVS IEPK+V EAL D+
Sbjct: 1021 DKRSSTRIQKMHPKELIIGDPNRGVTTRSR----EVEIVSNSCFVSKIEPKNVKEALTDE 1076
Query: 1084 GWIQAMQEELDQFTKNDVWTLMPKPKGFHVIGTKWVFRNKLNEKGEVTRNKARLVAQGYS 1143
WI AMQEEL+QF +N+VW L+P+P+G +VIGTKW+F+NK NE+G +TRNKARLVAQGY+
Sbjct: 1077 FWINAMQEELEQFKRNEVWELVPRPEGTNVIGTKWIFKNKTNEEGVITRNKARLVAQGYT 1136
Query: 1144 QQEGIDYTETFAPVARLEAIRLLISFSVNHNIILHQMDVKSAFLNGYISEEVYVKQPPGF 1203
Q EG+D+ ETFAPVARLE+IRLL+ + L+QMDVKSAFLNGY++EEVYV+QP GF
Sbjct: 1137 QIEGVDFDETFAPVARLESIRLLLGVACILKFKLYQMDVKSAFLNGYLNEEVYVEQPKGF 1196
Query: 1204 EDNKHPEHVYKLKKSLYGLKQAPRAWYERLSSFLLQNEFVRGKGDNTLFCRTYKNDILIV 1263
D HP+HVY+LKK+LYGLKQAPRAWYERL+ FL Q + +G D TLF + +++I
Sbjct: 1197 ADPTHPDHVYRLKKALYGLKQAPRAWYERLTEFLTQQGYRKGGIDKTLFVKQDAENLMIA 1256
Query: 1264 QIYVDDIIFGSANPSLCKEFSKLMQAEFEMSMMGELKYFLGIQIDQRPGVTYIHQKKYTL 1323
QIYVDDI+FG + + + F + MQ+EFEMS++GEL YFLG+Q+ Q ++ Q +Y
Sbjct: 1257 QIYVDDIVFGGMSNEMLRHFVQQMQSEFEMSLVGELTYFLGLQVKQMEDSIFLSQSRYAK 1316
Query: 1324 ELLKKFNMSDCNISKTPMHPTCILEKEEVSSKVCQKLYRGMIGSLLYLTASRPDILFSVH 1383
++KKF M + + +TP L K+E + V Q LYR MIGSLLYLTASRPDI ++V
Sbjct: 1317 NIVKKFGMENASHKRTPAPTHLKLSKDEAGTSVDQSLYRSMIGSLLYLTASRPDITYAVG 1376
Query: 1384 LCARFQSDPRETHLTAVKRILKYLKGTTNLGLMYRKTSEYTLSGFCDADFAGDRVERKST 1443
+CAR+Q++P+ +HLT VKRILKY+ GT++ G+MY S L G+CDAD+AG +RKST
Sbjct: 1377 VCARYQANPKISHLTQVKRILKYVNGTSDYGIMYCHCSNPMLVGYCDADWAGSADDRKST 1436
Query: 1444 SGSCHFLGSNLVTWSSKRQNTIALSTAEAEYVSAATCCTQTIWMKNHLEDYGLSLKKVPI 1503
SG C +LG+NL++W SK+QN ++LSTAEAEY++A + C+Q +WMK L++Y + + +
Sbjct: 1437 SGGCFYLGNNLISWFSKKQNCVSLSTAEAEYIAAGSSCSQLVWMKQMLKEYNVEQDVMTL 1496
Query: 1504 YCDNTAAISLSKNPILHSRAKHIEVKYHYIRDHVQKGTLSLEYVDT 1549
YCDN +AI++SKNP+ HSR KHI++++HYIRD V ++L++VDT
Sbjct: 1497 YCDNMSAINISKNPVQHSRTKHIDIRHHYIRDLVDDKVITLKHVDT 1542
>gb|AAO73523.1| gag-pol polyprotein [Glycine max]
Length = 1576
Score = 955 bits (2469), Expect = 0.0
Identities = 485/1006 (48%), Positives = 665/1006 (65%), Gaps = 10/1006 (0%)
Query: 544 LLQTSYAAQLRHLSWYLDSGCSRHMTGTRSIFQKLTPLKSGGDVGFGGNQKGKIIGKGSI 603
++ TS A + WYLDSGCSRHMTG + + P S V FG KGKIIG G +
Sbjct: 549 VVHTSLRASAKE-DWYLDSGCSRHMTGVKEFLLNIEPC-STSYVTFGDGSKGKIIGMGKL 606
Query: 604 GDGKTPVINDVLLVEGLFHNLLSISQIADKGYDVIFNQTGCKAVSQTDGSVLFSGKRKND 663
P +N VLLV+GL NL+SISQ+ D+G++V F ++ C V+ VL G R D
Sbjct: 607 VHDGLPSLNKVLLVKGLTANLISISQLCDEGFNVNFTKSEC-LVTNEKSEVLMKGSRSKD 665
Query: 664 IYKIRSSELLSQKVKCLMSVNDEQWIWHRRLGHASLRKISQLSKLNLVRGLPHLKYSSEA 723
+ + + S CL S DE IWH+R GH LR + ++ + VRG+P+LK
Sbjct: 666 NCYLWTPQETSYSSTCLSSKEDEVRIWHQRFGHLHLRGMKKILDKSAVRGIPNLKIEEGR 725
Query: 724 LCEACQKGKFTKKPFKAKNVVSTTRPLELLHIDLFGPVKTESIGGKKYELVIVDDYSRWT 783
+C CQ GK K + +T+R LELLH+DL GP++ ES+GGK+Y V+VDD+SR+T
Sbjct: 726 ICGECQIGKQVKMSHQKLQHQTTSRVLELLHMDLMGPMQVESLGGKRYAYVVVDDFSRFT 785
Query: 784 WVKFLRHKDETHTMFTNFITQVQKEFQSSVITVRSDHGGEFENKAFEDLFNSQGISHNFS 843
WV F+R K T +F ++Q+E + +RSDHG EFEN F + S+GI+H FS
Sbjct: 786 WVNFIREKSGTFEVFKKLSLRLQREKDCVIKRIRSDHGREFENSRFTEFCTSEGITHEFS 845
Query: 844 CPRTPQQNGVVERKNITLQEMARTMMQESSMAKHFWAEAINTACYIQNRISIRPILEKTP 903
TPQQNG+VERKN TLQE AR M+ + + WAEA+NTACYI NR+++R T
Sbjct: 846 AAITPQQNGIVERKNRTLQEAARVMLHAKELPYNLWAEAMNTACYIHNRVTLRRGTPTTL 905
Query: 904 YELCKGRQPDISYFHPFGSTCFMLNTKEQLGKFDSKALKCYFLGYSERSKGFRIYNIIHQ 963
YE+ KGR+P + +FH FGS C++L +EQ K D K+ FLGYS S+ +R++N +
Sbjct: 906 YEIWKGRKPSVKHFHIFGSPCYILADREQRRKMDPKSDAGIFLGYSTNSRAYRVFNSRTR 965
Query: 964 TVEESIQIRFDDKLGSEKSKLFERFADLSIDCSEANQPIKSPEDVAPEAEASEDFPTTSD 1023
TV ESI + DD + K + E D+ KS E+ A+++
Sbjct: 966 TVMESINVVVDDLSPARKKDVEE---DVRTSGDNVADAAKSGENAENSDSATDESNINQP 1022
Query: 1024 PLQKKKRIVASHPEELIIGNKDAPVRTRSMLKPSEETLLSLKGFVSLIEPKSVDEALEDK 1083
+ RI HP+ELIIG+ + V TRS E ++S FVS IEPK+V EAL D+
Sbjct: 1023 DKRSSTRIQKMHPKELIIGDPNRGVTTRSR----EVEIVSNSCFVSKIEPKNVKEALTDE 1078
Query: 1084 GWIQAMQEELDQFTKNDVWTLMPKPKGFHVIGTKWVFRNKLNEKGEVTRNKARLVAQGYS 1143
WI AMQEEL+QF +N+VW L+P+P+G +VIGTKW+F+NK NE+G +TRNKARLVAQGY+
Sbjct: 1079 FWINAMQEELEQFKRNEVWELVPRPEGTNVIGTKWIFKNKTNEEGVITRNKARLVAQGYT 1138
Query: 1144 QQEGIDYTETFAPVARLEAIRLLISFSVNHNIILHQMDVKSAFLNGYISEEVYVKQPPGF 1203
Q EG+D+ ETFAPVARLE+IRLL+ + L+QMDVKSAFLNGY++EEVYV+QP GF
Sbjct: 1139 QIEGVDFDETFAPVARLESIRLLLGVACILKFKLYQMDVKSAFLNGYLNEEVYVEQPKGF 1198
Query: 1204 EDNKHPEHVYKLKKSLYGLKQAPRAWYERLSSFLLQNEFVRGKGDNTLFCRTYKNDILIV 1263
D HP+HVY+LKK+LYGLKQAPRAWYERL+ FL Q + +G D TLF + +++I
Sbjct: 1199 ADPTHPDHVYRLKKALYGLKQAPRAWYERLTEFLTQQGYRKGGIDKTLFVKQDAENLMIA 1258
Query: 1264 QIYVDDIIFGSANPSLCKEFSKLMQAEFEMSMMGELKYFLGIQIDQRPGVTYIHQKKYTL 1323
QIYVDDI+FG + + + F + MQ+EFEMS++GEL YFLG+Q+ Q ++ Q +Y
Sbjct: 1259 QIYVDDIVFGGMSNEMLRHFVQQMQSEFEMSLVGELTYFLGLQVKQMEDSIFLSQSRYAK 1318
Query: 1324 ELLKKFNMSDCNISKTPMHPTCILEKEEVSSKVCQKLYRGMIGSLLYLTASRPDILFSVH 1383
++KKF M + + +TP L K+E + V QK YR MIGSLLYLTASRPDI ++V
Sbjct: 1319 NIVKKFGMENASHKRTPAPTHLKLSKDEAGTSVDQKPYRSMIGSLLYLTASRPDITYAVG 1378
Query: 1384 LCARFQSDPRETHLTAVKRILKYLKGTTNLGLMYRKTSEYTLSGFCDADFAGDRVERKST 1443
+CAR+Q++P+ +HL VKRILKY+ GT++ G+MY S L G+CDAD+AG +RKST
Sbjct: 1379 VCARYQANPKISHLNQVKRILKYVNGTSDYGIMYCHCSSSMLVGYCDADWAGSADDRKST 1438
Query: 1444 SGSCHFLGSNLVTWSSKRQNTIALSTAEAEYVSAATCCTQTIWMKNHLEDYGLSLKKVPI 1503
SG C +LG+NL++W SK+QN ++LSTAEAEY++A + C+Q +WMK L++Y + + +
Sbjct: 1439 SGGCFYLGNNLISWFSKKQNCVSLSTAEAEYIAAGSSCSQLVWMKQMLKEYNVEQDVMTL 1498
Query: 1504 YCDNTAAISLSKNPILHSRAKHIEVKYHYIRDHVQKGTLSLEYVDT 1549
YCDN +AI++SKNP+ HSR KHI++++HYIRD V ++L++VDT
Sbjct: 1499 YCDNMSAINISKNPVQHSRTKHIDIRHHYIRDLVDDKVITLKHVDT 1544
>gb|AAO73529.1| gag-pol polyprotein [Glycine max]
Length = 1577
Score = 954 bits (2467), Expect = 0.0
Identities = 487/1007 (48%), Positives = 669/1007 (66%), Gaps = 12/1007 (1%)
Query: 544 LLQTSYAAQLRHLSWYLDSGCSRHMTGTRSIFQKLTPLKSGGDVGFGGNQKGKIIGKGSI 603
++ TS A + WYLDSGCSRHMTG + + P S V FG KGKI G G +
Sbjct: 550 VVHTSLRASAKE-DWYLDSGCSRHMTGVKEFLVNIEPC-STSYVTFGDGSKGKITGMGKL 607
Query: 604 GDGKTPVINDVLLVEGLFHNLLSISQIADKGYDVIFNQTGCKAVSQTDGSVLFSGKRKND 663
P +N VLLV+GL NL+SISQ+ D+G++V F ++ C V+ VL G R D
Sbjct: 608 VHEGLPSLNKVLLVKGLTVNLISISQLCDEGFNVNFTKSEC-LVTNEKSEVLMKGSRSKD 666
Query: 664 IYKIRSSELLSQKVKCLMSVNDEQWIWHRRLGHASLRKISQLSKLNLVRGLPHLKYSSEA 723
+ + + S CL S DE IWH+R GH LR + ++ VRG+P+LK
Sbjct: 667 NCYLWTPQESSHSSTCLFSKEDEVKIWHQRFGHLHLRGMKKIIDKGAVRGIPNLKIEEGR 726
Query: 724 LCEACQKGKFTKKPFKAKNVVSTTRPLELLHIDLFGPVKTESIGGKKYELVIVDDYSRWT 783
+C CQ GK K + +T+R LELLH+DL GP++ ES+GGK+Y V+VDD+SR+T
Sbjct: 727 ICGECQIGKQVKMSHQKLQHQTTSRVLELLHMDLMGPMQVESLGGKRYAYVVVDDFSRFT 786
Query: 784 WVKFLRHKDETHTMFTNFITQVQKEFQSSVITVRSDHGGEFENKAFEDLFNSQGISHNFS 843
WV F+R K +T +F ++Q+E + +RSDHG EFEN F + S+GI+H FS
Sbjct: 787 WVNFIREKSDTFEVFKELSLRLQREKDCVIKRIRSDHGREFENSKFTEFCTSEGITHEFS 846
Query: 844 CPRTPQQNGVVERKNITLQEMARTMMQESSMAKHFWAEAINTACYIQNRISIRPILEKTP 903
TPQQNG+VERKN TLQE AR M+ + + WAEA+NTACYI NR+++R T
Sbjct: 847 AAITPQQNGIVERKNRTLQEAARVMLHAKELPYNLWAEAMNTACYIHNRVTLRRGTPTTL 906
Query: 904 YELCKGRQPDISYFHPFGSTCFMLNTKEQLGKFDSKALKCYFLGYSERSKGFRIYNIIHQ 963
YE+ KGR+P + +FH FGS C++L +EQ K D K+ FLGYS S+ +R++N +
Sbjct: 907 YEIWKGRKPTVKHFHIFGSPCYILADREQRRKMDPKSDAGIFLGYSTNSRAYRVFNSRTR 966
Query: 964 TVEESIQIRFDDKLGSEKSKLFERFADLSIDCSEANQPIKSPEDVAPEAEASEDFPTTSD 1023
TV ESI + DD + K + E D+ KS E+ A ++++ D P +
Sbjct: 967 TVMESINVVVDDLTPARKKDVEE---DVRTSGDNVADTAKSAEN-AENSDSATDEPNINQ 1022
Query: 1024 PLQKKK-RIVASHPEELIIGNKDAPVRTRSMLKPSEETLLSLKGFVSLIEPKSVDEALED 1082
P ++ RI HP+ELIIG+ + V TRS E ++S FVS IEPK+V EAL D
Sbjct: 1023 PDKRPSIRIQKMHPKELIIGDPNRGVTTRSR----EIEIVSNSCFVSKIEPKNVKEALTD 1078
Query: 1083 KGWIQAMQEELDQFTKNDVWTLMPKPKGFHVIGTKWVFRNKLNEKGEVTRNKARLVAQGY 1142
+ WI AMQEEL+QF +N+VW L+P+P+G +VIGTKW+F+NK NE+G +TRNKARLVAQGY
Sbjct: 1079 EFWINAMQEELEQFKRNEVWELVPRPEGTNVIGTKWIFKNKTNEEGVITRNKARLVAQGY 1138
Query: 1143 SQQEGIDYTETFAPVARLEAIRLLISFSVNHNIILHQMDVKSAFLNGYISEEVYVKQPPG 1202
+Q EG+D+ ETFAPVARLE+IRLL+ + L+QMDVKSAFLNGY++EE YV+QP G
Sbjct: 1139 TQIEGVDFDETFAPVARLESIRLLLGVACILKFKLYQMDVKSAFLNGYLNEEAYVEQPKG 1198
Query: 1203 FEDNKHPEHVYKLKKSLYGLKQAPRAWYERLSSFLLQNEFVRGKGDNTLFCRTYKNDILI 1262
F D HP+HVY+LKK+LYGLKQAPRAWYERL+ FL Q + +G D TLF + +++I
Sbjct: 1199 FVDPTHPDHVYRLKKALYGLKQAPRAWYERLTEFLTQQGYRKGGIDKTLFVKQDAENLMI 1258
Query: 1263 VQIYVDDIIFGSANPSLCKEFSKLMQAEFEMSMMGELKYFLGIQIDQRPGVTYIHQKKYT 1322
QIYVDDI+FG + + + F + MQ+EFEMS++GEL YFLG+Q+ Q ++ Q KY
Sbjct: 1259 AQIYVDDIVFGGMSNEMLRHFVQQMQSEFEMSLVGELTYFLGLQVKQMEDSIFLSQSKYA 1318
Query: 1323 LELLKKFNMSDCNISKTPMHPTCILEKEEVSSKVCQKLYRGMIGSLLYLTASRPDILFSV 1382
++KKF M + + +TP L K+E + V Q LYR MIGSLLYLTASRPDI ++V
Sbjct: 1319 KNIVKKFGMENASHKRTPAPTHLKLSKDEAGTSVDQSLYRSMIGSLLYLTASRPDITYAV 1378
Query: 1383 HLCARFQSDPRETHLTAVKRILKYLKGTTNLGLMYRKTSEYTLSGFCDADFAGDRVERKS 1442
+CAR+Q++P+ +HL VKRILKY+ GT++ G+MY S L G+CDAD+AG +RKS
Sbjct: 1379 GVCARYQANPKISHLNQVKRILKYVNGTSDYGIMYCHCSGSMLVGYCDADWAGSADDRKS 1438
Query: 1443 TSGSCHFLGSNLVTWSSKRQNTIALSTAEAEYVSAATCCTQTIWMKNHLEDYGLSLKKVP 1502
TSG C +LG+NL++W SK+QN ++LSTAEAEY++A + C+Q +WMK L++Y + +
Sbjct: 1439 TSGGCFYLGNNLISWFSKKQNCVSLSTAEAEYIAAGSSCSQLVWMKQMLKEYNVEQDVMT 1498
Query: 1503 IYCDNTAAISLSKNPILHSRAKHIEVKYHYIRDHVQKGTLSLEYVDT 1549
+YCDN +AI++SKNP+ HSR KHI++++HYIR+ V ++LE+VDT
Sbjct: 1499 LYCDNMSAINISKNPVQHSRTKHIDIRHHYIRELVDDKVITLEHVDT 1545
>gb|AAC49502.1| Pol [Zea mays] gi|7489803|pir||T04112 pol protein homolog - maize
retrotransposon Opie-2
Length = 1068
Score = 942 bits (2436), Expect = 0.0
Identities = 489/1039 (47%), Positives = 655/1039 (62%), Gaps = 59/1039 (5%)
Query: 557 SWYLDSGCSRHMTGTRSIFQKLTPLKSGGD-VGFGGNQKGKIIGKGSIGDGKTPVINDVL 615
SW +DSGC+ HMTG + +F K D + FG +GK+ G G I I++V
Sbjct: 10 SWIIDSGCTNHMTGEKKMFTSYVKNKDSQDSIIFGDGNQGKVKGLGKIAISNEHSISNVF 69
Query: 616 LVEGLFHNLLSISQIADKGYDVIFNQTGCKAVSQTDGSVLFSGKRKNDIYKIRSSELLSQ 675
LVE L +NLLS+SQ+ + GY+ +F + DGS+ F G +Y + ++ +
Sbjct: 70 LVESLGYNLLSVSQLCNMGYNCLFTNIDVSVFRRCDGSLAFKGVLDGKLYLVDFAKEEAG 129
Query: 676 KVKCLMSVNDEQWIWHRRLGHASLRKISQLSKLNLVRGLPHLKYSSEALCEACQKGKFTK 735
CL++ W+WHRRL H ++ + +L K V GL ++++ + C ACQ GK
Sbjct: 130 LDACLIAKTSMGWLWHRRLAHVGMKNLHKLLKGEHVIGLTNVQFEKDRPCAACQAGKQVG 189
Query: 736 KPFKAKNVVSTTRPLELLHIDLFGPVKTESIGGKKYELVIVDDYSRWTWVKFLRHKDETH 795
KNV++T+RPLE+LH+DLFGPV SIGG KY LVIVDD+SR+TWV FL+ K ET
Sbjct: 190 GSHHTKNVMTTSRPLEMLHMDLFGPVAYLSIGGSKYGLVIVDDFSRFTWVFFLQEKSETQ 249
Query: 796 TMFTNFITQVQKEFQSSVITVRSDHGGEFENKAFEDLFNSQGISHNFSCPRTPQQNGVVE 855
F+ + Q EF+ V +RSD+G EF+N E+ +GI H FS P TPQQNGVVE
Sbjct: 250 GTLKRFLRRAQNEFELKVKKIRSDNGSEFKNLQVEEFLEEEGIKHEFSAPYTPQQNGVVE 309
Query: 856 RKNITLQEMARTMMQESSMAKHFWAEAINTACYIQNRISIRPILEKTPYELCKGRQPDIS 915
RKN TL +MARTM+ E + FW EA+NTAC+ NR+ + IL+ T YEL G +P++S
Sbjct: 310 RKNRTLIDMARTMLGEFKTPECFWTEAVNTACHAINRVYLHRILKNTSYELLTGNKPNVS 369
Query: 916 YFHPFGSTCFMLNTKEQLGKFDSKALKCYFLGYSERSKGFRIYNIIHQTVEESIQIRFDD 975
YF FGS C++L K + KF KA++ + LGY +K +R++N VE S + FD+
Sbjct: 370 YFRVFGSKCYILVKKGRNSKFAPKAVEGFLLGYDSNTKAYRVFNKSSGLVEVSGDVVFDE 429
Query: 976 KLGSEKSKLFERFADLSIDCSEANQ-----------------PIKSPEDVAPEAEASEDF 1018
GS + ++ +DC + ++ P + E P
Sbjct: 430 TNGSPREQV--------VDCDDVDEEDIPTAAIRTMAIGEVRPQEQDEREQPSPSTMVHP 481
Query: 1019 PTTSD----------------------------PLQKKKRIVASHPEELIIGNKDAPVRT 1050
PT D P Q + I HP + I+G+ V T
Sbjct: 482 PTQDDEQVHQQEVCDQGGAQDDHVLEEEAQPAPPTQVRAMIQRDHPVDQILGDISKGVTT 541
Query: 1051 RSMLKPSEETLLSLKGFVSLIEPKSVDEALEDKGWIQAMQEELDQFTKNDVWTLMPKPKG 1110
RS L FVS IEP V+EAL D W+ AMQEEL+ F +N+VWTL+P+PK
Sbjct: 542 RSRL----VNFCEHNSFVSSIEPFRVEEALLDPDWVLAMQEELNNFKRNEVWTLVPRPKQ 597
Query: 1111 FHVIGTKWVFRNKLNEKGEVTRNKARLVAQGYSQQEGIDYTETFAPVARLEAIRLLISFS 1170
+V+GTKWVFRNK +E+G VTRNKARLVA+GY+Q G+D+ ETFAPVARLE+IR+L++++
Sbjct: 598 -NVVGTKWVFRNKQDERGVVTRNKARLVAKGYAQVAGLDFEETFAPVARLESIRILLAYA 656
Query: 1171 VNHNIILHQMDVKSAFLNGYISEEVYVKQPPGFEDNKHPEHVYKLKKSLYGLKQAPRAWY 1230
+H+ L+QMDVKSAFLNG I EEVYV+QPPGFED ++P+HV KL K+LYGLKQAPRAWY
Sbjct: 657 AHHSFRLYQMDVKSAFLNGPIKEEVYVEQPPGFEDERYPDHVCKLSKALYGLKQAPRAWY 716
Query: 1231 ERLSSFLLQNEFVRGKGDNTLFCRTYKNDILIVQIYVDDIIFGSANPSLCKEFSKLMQAE 1290
E L FL+ N F GK D TLF +T D+ + QIYVDDIIFGS N C+EFS++M +
Sbjct: 717 ECLRDFLIANAFKVGKADPTLFTKTCDGDLFVCQIYVDDIIFGSTNQKSCEEFSRVMTQK 776
Query: 1291 FEMSMMGELKYFLGIQIDQRPGVTYIHQKKYTLELLKKFNMSDCNISKTPMHPTCILEKE 1350
FEMSMMGEL YFLG Q+ Q T+I Q KYT +LLK+F M D +KTPM +
Sbjct: 777 FEMSMMGELNYFLGFQVKQLKDGTFISQTKYTQDLLKRFGMKDAKPAKTPMGTDGHTDLN 836
Query: 1351 EVSSKVCQKLYRGMIGSLLYLTASRPDILFSVHLCARFQSDPRETHLTAVKRILKYLKGT 1410
+ V QK YR MIGSLLYL ASRPDI+ SV +CARFQSDP+E HL AVKRIL+YL T
Sbjct: 837 KGGKSVDQKAYRSMIGSLLYLCASRPDIMLSVCMCARFQSDPKECHLVAVKRILRYLVAT 896
Query: 1411 TNLGLMYRKTSEYTLSGFCDADFAGDRVERKSTSGSCHFLGSNLVTWSSKRQNTIALSTA 1470
GL Y K S + L G+ D+D+AG +V+RKSTSG+C FLG +LV+W+SK+Q ++ALSTA
Sbjct: 897 PCFGLWYPKGSTFDLVGYSDSDYAGCKVDRKSTSGTCQFLGRSLVSWNSKKQTSVALSTA 956
Query: 1471 EAEYVSAATCCTQTIWMKNHLEDYGLSLKKVPIYCDNTAAISLSKNPILHSRAKHIEVKY 1530
EAEYV+A CC Q +WM+ L D+G +L KVP+ CDN +AI +++NP+ HSR KHI++++
Sbjct: 957 EAEYVAAGQCCAQLLWMRQTLRDFGYNLSKVPLLCDNESAIRMAENPVEHSRTKHIDIRH 1016
Query: 1531 HYIRDHVQKGTLSLEYVDT 1549
H++RDH QKG + + +V T
Sbjct: 1017 HFLRDHQQKGDIEVFHVST 1035
>gb|AAC64917.1| gag-pol polyprotein [Glycine max]
Length = 1550
Score = 942 bits (2436), Expect = 0.0
Identities = 483/1007 (47%), Positives = 664/1007 (64%), Gaps = 12/1007 (1%)
Query: 544 LLQTSYAAQLRHLSWYLDSGCSRHMTGTRSIFQKLTPLKSGGDVGFGGNQKGKIIGKGSI 603
++ TS A + WYLDSGCSRHMTG + + P S V FG KGKI G G +
Sbjct: 523 VVHTSLRASAKE-DWYLDSGCSRHMTGVKEFLVNIEPC-STSYVTFGDGSKGKITGMGKL 580
Query: 604 GDGKTPVINDVLLVEGLFHNLLSISQIADKGYDVIFNQTGCKAVSQTDGSVLFSGKRKND 663
P +N VLLV+GL NL+SISQ+ D+G++V F ++ C V+ VL G R D
Sbjct: 581 VHDGLPSLNKVLLVKGLTANLISISQLCDEGFNVNFTKSEC-LVTNEKSEVLMKGSRSKD 639
Query: 664 IYKIRSSELLSQKVKCLMSVNDEQWIWHRRLGHASLRKISQLSKLNLVRGLPHLKYSSEA 723
+ + + S CL S DE IWH+R GH LR + ++ VRG+P+LK
Sbjct: 640 NCYLWTPQETSYSSTCLFSKEDEVKIWHQRFGHLHLRGMKKIIDKGAVRGIPNLKIEEGR 699
Query: 724 LCEACQKGKFTKKPFKAKNVVSTTRPLELLHIDLFGPVKTESIGGKKYELVIVDDYSRWT 783
+C CQ GK K + +T+R LELLH+DL GP++ ES+G K+Y V+VDD+SR+T
Sbjct: 700 ICGECQIGKQVKMSNQKLQHQTTSRVLELLHMDLMGPMQVESLGRKRYAYVVVDDFSRFT 759
Query: 784 WVKFLRHKDETHTMFTNFITQVQKEFQSSVITVRSDHGGEFENKAFEDLFNSQGISHNFS 843
WV F+R K +T +F ++Q+E + +RSDHG EFEN F + S+GI+H FS
Sbjct: 760 WVNFIREKSDTFEVFKELSLRLQREKDCVIKRIRSDHGREFENSKFTEFCTSEGITHEFS 819
Query: 844 CPRTPQQNGVVERKNITLQEMARTMMQESSMAKHFWAEAINTACYIQNRISIRPILEKTP 903
TPQQNG+VERKN TLQE AR M+ + + WAEA+NTACYI NR+++R T
Sbjct: 820 AAITPQQNGIVERKNRTLQEAARVMLHAKELPYNLWAEAMNTACYIHNRVTLRRGTPTTL 879
Query: 904 YELCKGRQPDISYFHPFGSTCFMLNTKEQLGKFDSKALKCYFLGYSERSKGFRIYNIIHQ 963
YE+ KGR+P + +FH GS C++L +EQ K D K+ FLGYS S+ +R++N +
Sbjct: 880 YEIWKGRKPTVKHFHICGSPCYILADREQRRKMDPKSDAGIFLGYSTNSRAYRVFNSRTR 939
Query: 964 TVEESIQIRFDDKLGSEKSKLFERFADLSIDCSEANQPIKSPEDVAPEAEASEDFPTTSD 1023
TV ESI + DD + K + E D+ KS E+ A ++++ D P +
Sbjct: 940 TVMESINVVVDDLTPARKKDVEE---DVRTSGDNVADTAKSAEN-AENSDSATDEPNINQ 995
Query: 1024 PLQKKK-RIVASHPEELIIGNKDAPVRTRSMLKPSEETLLSLKGFVSLIEPKSVDEALED 1082
P ++ RI HP+ELIIG+ + V TRS E ++S FVS IEPK+V EAL D
Sbjct: 996 PDKRPSIRIQKMHPKELIIGDPNRGVTTRSR----EIEIISNSCFVSKIEPKNVKEALTD 1051
Query: 1083 KGWIQAMQEELDQFTKNDVWTLMPKPKGFHVIGTKWVFRNKLNEKGEVTRNKARLVAQGY 1142
+ WI AMQEEL+QF +N+VW L+P+P+G +VIGTKW+F+NK NE+G +TRNKARLVAQGY
Sbjct: 1052 EFWINAMQEELEQFKRNEVWELVPRPEGTNVIGTKWIFKNKTNEEGVITRNKARLVAQGY 1111
Query: 1143 SQQEGIDYTETFAPVARLEAIRLLISFSVNHNIILHQMDVKSAFLNGYISEEVYVKQPPG 1202
+Q EG+D+ ETFAP ARLE+IRLL+ + L+QMDVKSAFLNGY++EE YV+QP G
Sbjct: 1112 TQIEGVDFDETFAPGARLESIRLLLGVACILKFKLYQMDVKSAFLNGYLNEEAYVEQPKG 1171
Query: 1203 FEDNKHPEHVYKLKKSLYGLKQAPRAWYERLSSFLLQNEFVRGKGDNTLFCRTYKNDILI 1262
F D HP+HVY+LKK+LYGLKQAPRAWYERL+ FL Q + +G D TLF + +++I
Sbjct: 1172 FVDPTHPDHVYRLKKALYGLKQAPRAWYERLTEFLTQQGYRKGGIDKTLFVKQDAENLMI 1231
Query: 1263 VQIYVDDIIFGSANPSLCKEFSKLMQAEFEMSMMGELKYFLGIQIDQRPGVTYIHQKKYT 1322
QIYVDDI+FG + + + F + MQ+EFEMS++GEL YFLG+Q+ Q ++ Q KY
Sbjct: 1232 AQIYVDDIVFGGMSNEMLRHFVQQMQSEFEMSLVGELTYFLGLQVKQMEDSIFLSQSKYA 1291
Query: 1323 LELLKKFNMSDCNISKTPMHPTCILEKEEVSSKVCQKLYRGMIGSLLYLTASRPDILFSV 1382
++KKF M + + +TP L K+E + V Q LYR MIGSLLYLTASRPDI ++V
Sbjct: 1292 KNIVKKFGMENASHKRTPAPTHLKLSKDEAGTSVDQSLYRSMIGSLLYLTASRPDITYAV 1351
Query: 1383 HLCARFQSDPRETHLTAVKRILKYLKGTTNLGLMYRKTSEYTLSGFCDADFAGDRVERKS 1442
CAR+Q++P+ +HL VKRILKY+ GT++ G+MY S+ L G+CDAD+AG +RKS
Sbjct: 1352 GGCARYQANPKISHLNQVKRILKYVNGTSDYGIMYCHCSDSMLVGYCDADWAGSVDDRKS 1411
Query: 1443 TSGSCHFLGSNLVTWSSKRQNTIALSTAEAEYVSAATCCTQTIWMKNHLEDYGLSLKKVP 1502
T G C +LG+N ++W SK+QN ++LSTAEAEY++A + C+Q +WMK L++Y + +
Sbjct: 1412 TFGGCFYLGTNFISWFSKKQNCVSLSTAEAEYIAAGSSCSQLVWMKQMLKEYNVEQDVMT 1471
Query: 1503 IYCDNTAAISLSKNPILHSRAKHIEVKYHYIRDHVQKGTLSLEYVDT 1549
+YCDN +AI++SKNP+ HSR KHI++++HYIRD V ++LE+VDT
Sbjct: 1472 LYCDNLSAINISKNPVQHSRTKHIDIRHHYIRDLVDDKVITLEHVDT 1518
>gb|AAO73525.1| gag-pol polyprotein [Glycine max]
Length = 1576
Score = 942 bits (2435), Expect = 0.0
Identities = 483/1007 (47%), Positives = 664/1007 (64%), Gaps = 12/1007 (1%)
Query: 544 LLQTSYAAQLRHLSWYLDSGCSRHMTGTRSIFQKLTPLKSGGDVGFGGNQKGKIIGKGSI 603
++ TS A + WYLDSGCSRHMTG + + P S V FG KGKI G G +
Sbjct: 549 VVHTSLRASAKE-DWYLDSGCSRHMTGVKEFLVNIEPC-STSYVTFGDGSKGKITGMGKL 606
Query: 604 GDGKTPVINDVLLVEGLFHNLLSISQIADKGYDVIFNQTGCKAVSQTDGSVLFSGKRKND 663
P +N VLLV+GL NL+SISQ+ D+G++V F ++ C V+ VL G R D
Sbjct: 607 VHDGLPSLNKVLLVKGLTANLISISQLCDEGFNVNFTKSEC-LVTNEKSEVLMKGSRSKD 665
Query: 664 IYKIRSSELLSQKVKCLMSVNDEQWIWHRRLGHASLRKISQLSKLNLVRGLPHLKYSSEA 723
+ + + S CL S DE IWH+R GH LR + ++ VRG+P+LK
Sbjct: 666 NCYLWTPQETSYSSTCLSSKEDEVKIWHQRFGHLHLRGMKKIIDKGAVRGIPNLKIEEGR 725
Query: 724 LCEACQKGKFTKKPFKAKNVVSTTRPLELLHIDLFGPVKTESIGGKKYELVIVDDYSRWT 783
+C CQ GK K + +T+ LELLH+DL GP++ ES+GGK+Y V+VDD+SR+T
Sbjct: 726 ICGECQIGKQVKMSHQKLQHQTTSMVLELLHMDLMGPMQVESLGGKRYAYVVVDDFSRFT 785
Query: 784 WVKFLRHKDETHTMFTNFITQVQKEFQSSVITVRSDHGGEFENKAFEDLFNSQGISHNFS 843
WV F+R K +T +F ++Q+E + +RSDHG EFEN F + S+GI+H FS
Sbjct: 786 WVNFIREKSDTFEVFKELSLRLQREKDCVIKRIRSDHGREFENSKFTEFCTSEGITHEFS 845
Query: 844 CPRTPQQNGVVERKNITLQEMARTMMQESSMAKHFWAEAINTACYIQNRISIRPILEKTP 903
TPQQNG+VERKN TLQE R M+ + + WAEA+NTACYI NR+++R T
Sbjct: 846 AAITPQQNGIVERKNRTLQEATRVMLHAKELPYNLWAEAMNTACYIHNRVTLRRGTPTTL 905
Query: 904 YELCKGRQPDISYFHPFGSTCFMLNTKEQLGKFDSKALKCYFLGYSERSKGFRIYNIIHQ 963
YE+ KGR+P + +FH FGS C++L +EQ K D K+ FLGYS S+ +R++N +
Sbjct: 906 YEIWKGRKPTVKHFHIFGSPCYILADREQRRKMDPKSDAGIFLGYSTNSRAYRVFNSRTR 965
Query: 964 TVEESIQIRFDDKLGSEKSKLFERFADLSIDCSEANQPIKSPEDVAPEAEASEDFPTTSD 1023
TV ESI + DD + K + E D+ KS E+ A +++++ D P +
Sbjct: 966 TVMESINVVVDDLTPARKKDVEE---DVRTSEDNVADTAKSAEN-AEKSDSTTDEPNINQ 1021
Query: 1024 PLQKKK-RIVASHPEELIIGNKDAPVRTRSMLKPSEETLLSLKGFVSLIEPKSVDEALED 1082
P + RI P+ELIIG+ + V TRS E ++S FVS IEPK+V EAL D
Sbjct: 1022 PDKSPFIRIQKMQPKELIIGDPNRGVTTRSR----EIEIVSNSCFVSKIEPKNVKEALTD 1077
Query: 1083 KGWIQAMQEELDQFTKNDVWTLMPKPKGFHVIGTKWVFRNKLNEKGEVTRNKARLVAQGY 1142
+ WI AMQEEL+QF +N+VW L+P+P+G +VIGTKW+F+NK NE+G +TRNKARLVAQGY
Sbjct: 1078 EFWINAMQEELEQFKRNEVWELVPRPEGTNVIGTKWIFKNKTNEEGVITRNKARLVAQGY 1137
Query: 1143 SQQEGIDYTETFAPVARLEAIRLLISFSVNHNIILHQMDVKSAFLNGYISEEVYVKQPPG 1202
+Q EG+D+ ETFAPVARLE+IRLL+ + L+QMDVKSAFLNGY++EE YV+QP G
Sbjct: 1138 TQIEGVDFDETFAPVARLESIRLLLGVACILKFKLYQMDVKSAFLNGYLNEEAYVEQPKG 1197
Query: 1203 FEDNKHPEHVYKLKKSLYGLKQAPRAWYERLSSFLLQNEFVRGKGDNTLFCRTYKNDILI 1262
F D H +HVY+LKK+LYGLKQAPRAWYERL+ FL Q + +G D TLF + +++I
Sbjct: 1198 FVDPTHLDHVYRLKKALYGLKQAPRAWYERLTEFLTQQGYRKGGIDKTLFVKQDAENLMI 1257
Query: 1263 VQIYVDDIIFGSANPSLCKEFSKLMQAEFEMSMMGELKYFLGIQIDQRPGVTYIHQKKYT 1322
QIYVDDI+FG + + + F MQ+EFEMS++GEL YFLG+Q+ Q ++ Q KY
Sbjct: 1258 AQIYVDDIVFGGMSNEMLRHFVPQMQSEFEMSLVGELHYFLGLQVKQMEDSIFLSQSKYA 1317
Query: 1323 LELLKKFNMSDCNISKTPMHPTCILEKEEVSSKVCQKLYRGMIGSLLYLTASRPDILFSV 1382
++KKF M + + +TP L K+E + V Q LYR MIGSLLYLTASRPDI F+V
Sbjct: 1318 KNIVKKFGMENASHKRTPAPTHLKLSKDEAGTSVDQNLYRSMIGSLLYLTASRPDITFAV 1377
Query: 1383 HLCARFQSDPRETHLTAVKRILKYLKGTTNLGLMYRKTSEYTLSGFCDADFAGDRVERKS 1442
+CAR+Q++P+ +HL VKRILKY+ GT++ G+MY S+ L G+CDAD+AG +RK
Sbjct: 1378 GVCARYQANPKISHLNQVKRILKYVNGTSDYGIMYCHCSDSMLVGYCDADWAGSADDRKC 1437
Query: 1443 TSGSCHFLGSNLVTWSSKRQNTIALSTAEAEYVSAATCCTQTIWMKNHLEDYGLSLKKVP 1502
TSG C +LG+NL++W SK+QN ++LSTAEAEY++A + C+Q +WMK L++Y + +
Sbjct: 1438 TSGGCFYLGTNLISWFSKKQNCVSLSTAEAEYIAAGSSCSQLVWMKQMLKEYNVEQDVMT 1497
Query: 1503 IYCDNTAAISLSKNPILHSRAKHIEVKYHYIRDHVQKGTLSLEYVDT 1549
+YCDN +AI++SKNP+ H+R KHI++++HYIRD V ++LE+VDT
Sbjct: 1498 LYCDNMSAINISKNPVQHNRTKHIDIRHHYIRDLVDDKIITLEHVDT 1544
>gb|AAN60494.1| Putative Zea mays retrotransposon Opie-2 [Oryza sativa (japonica
cultivar-group)] gi|34902378|ref|NP_912535.1| Putative
Zea mays retrotransposon Opie-2 [Oryza sativa (japonica
cultivar-group)]
Length = 2145
Score = 934 bits (2415), Expect = 0.0
Identities = 490/1022 (47%), Positives = 665/1022 (64%), Gaps = 35/1022 (3%)
Query: 554 RHLSWYLDSGCSRHMTGTRSIFQKLTPLKSGGDVGFGGNQKGKIIGKGSIGDGKTPVIND 613
R SW +DSGCSRHMTG F LT S + FG G+++ KG+I ++ D
Sbjct: 750 RSNSWLVDSGCSRHMTGEAKWFTSLTRASSDETITFGDASSGRVMAKGTIKVNDKFMLKD 809
Query: 614 VLLVEGLFHNLLSISQIADKGYDVIFNQTGCKAVSQTDGSVLFSGKRKNDIYKIRSSELL 673
V LV L +NLLS+SQ+ D+ +V F + + + ++ V F R ++
Sbjct: 810 VALVSKLKYNLLSVSQLCDENLEVRFKKDRSRVLDASESPV-FDISRVGRVFFANFDSSA 868
Query: 674 SQKVKCLM-SVNDEQWIWHRRLGHASLRKISQLSKLNLVRGLPHLKYSSEALCEACQKGK 732
+CL+ S N + + WHRRLGH +S++S ++L+RGLP LK + +C C+ GK
Sbjct: 869 PGPSRCLIASENRDLFFWHRRLGHIGFDHLSRISGMDLIRGLPKLKVPKDLVCAPCRHGK 928
Query: 733 FTKKPFKAKNVVSTTRPLELLHIDLFGPVKTESIGGKKYELVIVDDYSRWTWVKFLRHKD 792
T K +V T P +LLH+D GP + +S+GGK Y LV+VDD+SR++WV FL K+
Sbjct: 929 MTSSSHKPVTMVMTDGPGQLLHMDTVGPARVQSVGGKWYVLVVVDDFSRYSWVYFLESKE 988
Query: 793 ETHTMFTNFITQVQKEFQSSVITVRSDHGGEFENKAFEDLFNSQGISHNFSCPRTPQQNG 852
ET F + + EF ++ +RSD+G EF+N AFE +S G+ H FS P PQQNG
Sbjct: 989 ETFGFFQSLARSLALEFPGALRAIRSDNGSEFKNSAFESFCDSSGVEHQFSSPYVPQQNG 1048
Query: 853 VVERKNITLQEMARTMMQESSMAKHFWAEAINTACYIQNRISIRPILEKTPYELCKGRQP 912
VVERKN TL EMARTM+ E + + FW EAI+ AC+I NR+ +R IL KTPYEL GR+P
Sbjct: 1049 VVERKNRTLVEMARTMLDEFTTPRKFWTEAISAACFISNRVFLRTILHKTPYELRFGRRP 1108
Query: 913 DISYFHPFGSTCFMLNTKEQLGKFDSKALKCYFLGYSERSKGFRIYNIIHQTVEESIQIR 972
+S+ FG CF+L + L KF+S++L FLGY+ S+ +R+Y + + E+ ++
Sbjct: 1109 KVSHLRVFGCKCFVLKSGN-LDKFESRSLDGIFLGYATHSRAYRVYVLSTNKIVETCEVT 1167
Query: 973 FDDKLGSEKSKLF-----ERFADLSIDCSEANQPIKSPEDVAPEAEA---------SEDF 1018
FD+ + ++ F D D + + I P D P + S D
Sbjct: 1168 FDEASPGARPEISGVPDESIFVDEDSD-DDDDDSIPPPLDSTPPVQETGSPSTTSPSGDA 1226
Query: 1019 PTTSDPLQKK-----------KRIVASHPEELIIGNKDAPVRTRSMLKPSEETLLSLKGF 1067
PTTS ++ + I HP + +IG V TR+ S E + S F
Sbjct: 1227 PTTSSSAAEEIDGGTSGPTAPRHIQNRHPPDSMIGGLGERV-TRNR---SYELVNS--AF 1280
Query: 1068 VSLIEPKSVDEALEDKGWIQAMQEELDQFTKNDVWTLMPKPKGFHVIGTKWVFRNKLNEK 1127
V+ EPK+V AL D+ W+ AM EEL+ F +N VW+L+ P GF+VIGTKWVF+NKL E
Sbjct: 1281 VASFEPKNVCHALSDENWVNAMHEELENFERNKVWSLVEPPLGFNVIGTKWVFKNKLGED 1340
Query: 1128 GEVTRNKARLVAQGYSQQEGIDYTETFAPVARLEAIRLLISFSVNHNIILHQMDVKSAFL 1187
G + RNKARLVAQG++Q EG+D+ ETFAPVARLEAIR+L++F+ + L QMDVKSAFL
Sbjct: 1341 GSIVRNKARLVAQGFTQVEGLDFEETFAPVARLEAIRILLAFAASKGFKLFQMDVKSAFL 1400
Query: 1188 NGYISEEVYVKQPPGFEDNKHPEHVYKLKKSLYGLKQAPRAWYERLSSFLLQNEFVRGKG 1247
NG I EEVYVKQPPGFE+ K P HV+KL+K+LYGLKQAPRAWYERL +FLLQN F G
Sbjct: 1401 NGVIEEEVYVKQPPGFENPKFPNHVFKLEKALYGLKQAPRAWYERLKTFLLQNGFEMGAV 1460
Query: 1248 DNTLFCRTYKNDILIVQIYVDDIIFGSANPSLCKEFSKLMQAEFEMSMMGELKYFLGIQI 1307
D TLF D L+VQIYVDDIIFG ++ +L +FS +M EFEMSMMGEL +FLG+QI
Sbjct: 1461 DKTLFTLHSGIDFLLVQIYVDDIIFGGSSHALVAQFSDVMSREFEMSMMGELTFFLGLQI 1520
Query: 1308 DQRPGVTYIHQKKYTLELLKKFNMSDCNISKTPMHPTCILEKEEVSSKVCQKLYRGMIGS 1367
Q ++HQ KY+ ELLKKF+M+DC TPM T L +E +V Q+ YR MIGS
Sbjct: 1521 KQTKEGIFVHQTKYSKELLKKFDMADCKPIATPMATTSSLGPDEDGEEVDQREYRSMIGS 1580
Query: 1368 LLYLTASRPDILFSVHLCARFQSDPRETHLTAVKRILKYLKGTTNLGLMYRKTSEYTLSG 1427
LLYLTASRPDI FSV LCARFQ+ PR +H AVKR+ +Y+K T G+ Y +S ++
Sbjct: 1581 LLYLTASRPDIHFSVCLCARFQASPRTSHRQAVKRMFRYIKSTLEYGIWYSCSSALSVRA 1640
Query: 1428 FCDADFAGDRVERKSTSGSCHFLGSNLVTWSSKRQNTIALSTAEAEYVSAATCCTQTIWM 1487
F DADFAG +++RKSTSG+CHFLG++LV+WSS++Q+++A STAEAEYV+AA+ C+Q +WM
Sbjct: 1641 FSDADFAGCKIDRKSTSGTCHFLGTSLVSWSSRKQSSVAQSTAEAEYVAAASACSQVLWM 1700
Query: 1488 KNHLEDYGLSLKKVPIYCDNTAAISLSKNPILHSRAKHIEVKYHYIRDHVQKGTLSLEYV 1547
+ L+DYGLS VP+ CDNT+AI+++KNP+ HSR KHIE++YH++RD+V+KGT+ LE+V
Sbjct: 1701 ISTLKDYGLSFSGVPLLCDNTSAINIAKNPVQHSRTKHIEIRYHFLRDNVEKGTIVLEFV 1760
Query: 1548 DT 1549
++
Sbjct: 1761 ES 1762
>ref|XP_474304.1| OSJNBb0004A17.2 [Oryza sativa (japonica cultivar-group)]
gi|32488723|emb|CAE03600.1| OSJNBb0004A17.2 [Oryza sativa
(japonica cultivar-group)]
Length = 1877
Score = 934 bits (2415), Expect = 0.0
Identities = 490/1022 (47%), Positives = 665/1022 (64%), Gaps = 35/1022 (3%)
Query: 554 RHLSWYLDSGCSRHMTGTRSIFQKLTPLKSGGDVGFGGNQKGKIIGKGSIGDGKTPVIND 613
R SW +DSGCSRHMTG F LT S + FG G+++ KG+I ++ D
Sbjct: 832 RSNSWLVDSGCSRHMTGEAKWFTSLTRASSDETITFGDASSGRVMAKGTIKVNDKFMLKD 891
Query: 614 VLLVEGLFHNLLSISQIADKGYDVIFNQTGCKAVSQTDGSVLFSGKRKNDIYKIRSSELL 673
V LV L +NLLS+SQ+ D+ +V F + + + ++ V F R ++
Sbjct: 892 VALVSKLKYNLLSVSQLCDENLEVRFKKDRSRVLDASESPV-FDISRVGRVFFANFDSSA 950
Query: 674 SQKVKCLM-SVNDEQWIWHRRLGHASLRKISQLSKLNLVRGLPHLKYSSEALCEACQKGK 732
+CL+ S N + + WHRRLGH +S++S ++L+RGLP LK + +C C+ GK
Sbjct: 951 PGPSRCLIASENRDLFFWHRRLGHIGFDHLSRISGMDLIRGLPKLKVPKDLVCAPCRHGK 1010
Query: 733 FTKKPFKAKNVVSTTRPLELLHIDLFGPVKTESIGGKKYELVIVDDYSRWTWVKFLRHKD 792
T K +V T P +LLH+D GP + +S+GGK Y LV+VDD+SR++WV FL K+
Sbjct: 1011 MTSSSHKPVTMVMTDGPGQLLHMDTVGPARVQSVGGKWYVLVVVDDFSRYSWVYFLESKE 1070
Query: 793 ETHTMFTNFITQVQKEFQSSVITVRSDHGGEFENKAFEDLFNSQGISHNFSCPRTPQQNG 852
ET F + + EF ++ +RSD+G EF+N AFE +S G+ H FS P PQQNG
Sbjct: 1071 ETFGFFQSLARSLALEFPGALRAIRSDNGSEFKNSAFESFCDSSGVEHQFSSPYVPQQNG 1130
Query: 853 VVERKNITLQEMARTMMQESSMAKHFWAEAINTACYIQNRISIRPILEKTPYELCKGRQP 912
VVERKN TL EMARTM+ E + + FW EAI+ AC+I NR+ +R IL KTPYEL GR+P
Sbjct: 1131 VVERKNRTLVEMARTMLDEFTTPRKFWTEAISAACFISNRVFLRTILHKTPYELRFGRRP 1190
Query: 913 DISYFHPFGSTCFMLNTKEQLGKFDSKALKCYFLGYSERSKGFRIYNIIHQTVEESIQIR 972
+S+ FG CF+L + L KF+S++L FLGY+ S+ +R+Y + + E+ ++
Sbjct: 1191 KVSHLRVFGCKCFVLKSGN-LDKFESRSLDGIFLGYATHSRAYRVYVLSTNKIVETCEVT 1249
Query: 973 FDDKLGSEKSKLF-----ERFADLSIDCSEANQPIKSPEDVAPEAEA---------SEDF 1018
FD+ + ++ F D D + + I P D P + S D
Sbjct: 1250 FDEASPGARPEISGVPDESIFVDEDSD-DDDDDSIPPPLDSTPPVQETGSPSTTSPSGDA 1308
Query: 1019 PTTSDPLQKK-----------KRIVASHPEELIIGNKDAPVRTRSMLKPSEETLLSLKGF 1067
PTTS ++ + I HP + +IG V TR+ S E + S F
Sbjct: 1309 PTTSSSAAEEIDGGTSGPTAPRHIQNRHPPDSMIGGLGERV-TRNR---SYELVNS--AF 1362
Query: 1068 VSLIEPKSVDEALEDKGWIQAMQEELDQFTKNDVWTLMPKPKGFHVIGTKWVFRNKLNEK 1127
V+ EPK+V AL D+ W+ AM EEL+ F +N VW+L+ P GF+VIGTKWVF+NKL E
Sbjct: 1363 VASFEPKNVCHALSDENWVNAMHEELENFERNKVWSLVEPPLGFNVIGTKWVFKNKLGED 1422
Query: 1128 GEVTRNKARLVAQGYSQQEGIDYTETFAPVARLEAIRLLISFSVNHNIILHQMDVKSAFL 1187
G + RNKARLVAQG++Q EG+D+ ETFAPVARLEAIR+L++F+ + L QMDVKSAFL
Sbjct: 1423 GSIVRNKARLVAQGFTQVEGLDFEETFAPVARLEAIRILLAFAASKGFKLFQMDVKSAFL 1482
Query: 1188 NGYISEEVYVKQPPGFEDNKHPEHVYKLKKSLYGLKQAPRAWYERLSSFLLQNEFVRGKG 1247
NG I EEVYVKQPPGFE+ K P HV+KL+K+LYGLKQAPRAWYERL +FLLQN F G
Sbjct: 1483 NGVIEEEVYVKQPPGFENPKFPNHVFKLEKALYGLKQAPRAWYERLKTFLLQNGFEMGAV 1542
Query: 1248 DNTLFCRTYKNDILIVQIYVDDIIFGSANPSLCKEFSKLMQAEFEMSMMGELKYFLGIQI 1307
D TLF D L+VQIYVDDIIFG ++ +L +FS +M EFEMSMMGEL +FLG+QI
Sbjct: 1543 DKTLFTLHSGIDFLLVQIYVDDIIFGGSSHALVAQFSDVMSREFEMSMMGELTFFLGLQI 1602
Query: 1308 DQRPGVTYIHQKKYTLELLKKFNMSDCNISKTPMHPTCILEKEEVSSKVCQKLYRGMIGS 1367
Q ++HQ KY+ ELLKKF+M+DC TPM T L +E +V Q+ YR MIGS
Sbjct: 1603 KQTKEGIFVHQTKYSKELLKKFDMADCKPIATPMATTSSLGPDEDGEEVDQREYRSMIGS 1662
Query: 1368 LLYLTASRPDILFSVHLCARFQSDPRETHLTAVKRILKYLKGTTNLGLMYRKTSEYTLSG 1427
LLYLTASRPDI FSV LCARFQ+ PR +H AVKR+ +Y+K T G+ Y +S ++
Sbjct: 1663 LLYLTASRPDIHFSVCLCARFQASPRTSHRQAVKRMFRYIKSTLEYGIWYSCSSALSVRA 1722
Query: 1428 FCDADFAGDRVERKSTSGSCHFLGSNLVTWSSKRQNTIALSTAEAEYVSAATCCTQTIWM 1487
F DADFAG +++RKSTSG+CHFLG++LV+WSS++Q+++A STAEAEYV+AA+ C+Q +WM
Sbjct: 1723 FSDADFAGCKIDRKSTSGTCHFLGTSLVSWSSRKQSSVAQSTAEAEYVAAASACSQVLWM 1782
Query: 1488 KNHLEDYGLSLKKVPIYCDNTAAISLSKNPILHSRAKHIEVKYHYIRDHVQKGTLSLEYV 1547
+ L+DYGLS VP+ CDNT+AI+++KNP+ HSR KHIE++YH++RD+V+KGT+ LE+V
Sbjct: 1783 ISTLKDYGLSFSGVPLLCDNTSAINIAKNPVQHSRTKHIEIRYHFLRDNVEKGTIVLEFV 1842
Query: 1548 DT 1549
++
Sbjct: 1843 ES 1844
>ref|NP_910082.1| putative gag-pol polyprotein [Oryza sativa (japonica cultivar-group)]
gi|28269414|gb|AAO37957.1| putative gag-pol polyprotein
[Oryza sativa (japonica cultivar-group)]
Length = 1969
Score = 934 bits (2415), Expect = 0.0
Identities = 490/1022 (47%), Positives = 664/1022 (64%), Gaps = 35/1022 (3%)
Query: 554 RHLSWYLDSGCSRHMTGTRSIFQKLTPLKSGGDVGFGGNQKGKIIGKGSIGDGKTPVIND 613
R SW +DSGCSRHMTG F LT + FG G+++ KG+I ++ D
Sbjct: 750 RSNSWLVDSGCSRHMTGEAKWFTSLTRASGDETITFGDASSGRVMAKGTIKVNDKFMLKD 809
Query: 614 VLLVEGLFHNLLSISQIADKGYDVIFNQTGCKAVSQTDGSVLFSGKRKNDIYKIRSSELL 673
V LV L +NLLS+SQ+ D+ +V F + + + ++ V F R ++
Sbjct: 810 VALVSKLKYNLLSVSQLCDENLEVRFKKDRSRVLDASESPV-FDISRVGRVFFANFDSSA 868
Query: 674 SQKVKCLM-SVNDEQWIWHRRLGHASLRKISQLSKLNLVRGLPHLKYSSEALCEACQKGK 732
+CL+ S N + + WHRRLGH +S++S ++L+RGLP LK + +C C+ GK
Sbjct: 869 PGPSRCLIASENRDLFFWHRRLGHIGFDHLSRISGMDLIRGLPKLKVQKDLVCAPCRHGK 928
Query: 733 FTKKPFKAKNVVSTTRPLELLHIDLFGPVKTESIGGKKYELVIVDDYSRWTWVKFLRHKD 792
T K +V T P +LLH+D GP + +S+GGK Y LV+VDD+SR++WV FL K+
Sbjct: 929 MTSSSHKPVTMVMTDGPGQLLHMDTVGPARVQSVGGKWYVLVVVDDFSRYSWVYFLESKE 988
Query: 793 ETHTMFTNFITQVQKEFQSSVITVRSDHGGEFENKAFEDLFNSQGISHNFSCPRTPQQNG 852
ET F + + EF ++ +RSD+G EF+N AFE +S G+ H FS P PQQNG
Sbjct: 989 ETFGFFQSLARSLALEFPGALRAIRSDNGSEFKNSAFESFCDSSGVEHQFSSPYVPQQNG 1048
Query: 853 VVERKNITLQEMARTMMQESSMAKHFWAEAINTACYIQNRISIRPILEKTPYELCKGRQP 912
VVERKN TL EMARTM+ E + + FW EAI+ AC+I NR+ +R IL KTPYEL GR+P
Sbjct: 1049 VVERKNRTLVEMARTMLDEFTTPRKFWTEAISAACFISNRVFLRTILHKTPYELRFGRRP 1108
Query: 913 DISYFHPFGSTCFMLNTKEQLGKFDSKALKCYFLGYSERSKGFRIYNIIHQTVEESIQIR 972
+S+ FG CF+L + L KF+S++L FLGY+ S+ +R+Y + + E+ ++
Sbjct: 1109 KVSHLRVFGCKCFVLKSGN-LDKFESRSLDGIFLGYATHSRAYRVYVLSTNKIVETCEVT 1167
Query: 973 FDDKLGSEKSKLF-----ERFADLSIDCSEANQPIKSPEDVAPEAEA---------SEDF 1018
FD+ + ++ F D D + + I P D P + S D
Sbjct: 1168 FDEASPGARPEISGVPDESIFVDEDSD-DDDDDSIPPPLDSTPPVQETGSPSTTSPSGDA 1226
Query: 1019 PTTSDPLQKK-----------KRIVASHPEELIIGNKDAPVRTRSMLKPSEETLLSLKGF 1067
PTTS ++ + I HP + +IG V TR+ S E + S F
Sbjct: 1227 PTTSSSAAEEIDGGTSGPTAPRHIQNRHPPDSMIGGLGERV-TRNR---SYELVNS--AF 1280
Query: 1068 VSLIEPKSVDEALEDKGWIQAMQEELDQFTKNDVWTLMPKPKGFHVIGTKWVFRNKLNEK 1127
V+ EPK+V AL D+ W+ AM EEL+ F +N VW+L+ P GF+VIGTKWVF+NKL E
Sbjct: 1281 VASFEPKNVCHALSDENWVNAMHEELENFERNKVWSLVEPPLGFNVIGTKWVFKNKLGED 1340
Query: 1128 GEVTRNKARLVAQGYSQQEGIDYTETFAPVARLEAIRLLISFSVNHNIILHQMDVKSAFL 1187
G + RNKARLVAQG++Q EG+D+ ETFAPVARLEAIR+L++F+ + L QMDVKSAFL
Sbjct: 1341 GSIVRNKARLVAQGFTQVEGLDFEETFAPVARLEAIRILLAFAASKGFKLFQMDVKSAFL 1400
Query: 1188 NGYISEEVYVKQPPGFEDNKHPEHVYKLKKSLYGLKQAPRAWYERLSSFLLQNEFVRGKG 1247
NG I EEVYVKQPPGFE+ K P HV+KL+K+LYGLKQAPRAWYERL +FLLQN F G
Sbjct: 1401 NGVIEEEVYVKQPPGFENPKFPNHVFKLEKALYGLKQAPRAWYERLKTFLLQNGFEMGAV 1460
Query: 1248 DNTLFCRTYKNDILIVQIYVDDIIFGSANPSLCKEFSKLMQAEFEMSMMGELKYFLGIQI 1307
D TLF D L+VQIYVDDIIFG ++ +L +FS +M EFEMSMMGEL +FLG+QI
Sbjct: 1461 DKTLFTLHSGIDFLLVQIYVDDIIFGGSSHALVAQFSDVMSREFEMSMMGELTFFLGLQI 1520
Query: 1308 DQRPGVTYIHQKKYTLELLKKFNMSDCNISKTPMHPTCILEKEEVSSKVCQKLYRGMIGS 1367
Q ++HQ KY+ ELLKKF+M+DC TPM T L +E +V Q+ YR MIGS
Sbjct: 1521 KQTKEGIFVHQTKYSKELLKKFDMADCKPIATPMATTSSLGPDEDGEEVDQREYRSMIGS 1580
Query: 1368 LLYLTASRPDILFSVHLCARFQSDPRETHLTAVKRILKYLKGTTNLGLMYRKTSEYTLSG 1427
LLYLTASRPDI FSV LCARFQ+ PR +H AVKRI +Y+K T G+ Y +S ++
Sbjct: 1581 LLYLTASRPDIHFSVCLCARFQASPRTSHRQAVKRIFRYIKSTLEYGIWYSCSSALSVRA 1640
Query: 1428 FCDADFAGDRVERKSTSGSCHFLGSNLVTWSSKRQNTIALSTAEAEYVSAATCCTQTIWM 1487
F DADFAG +++RKSTSG+CHFLG++LV+WSS++Q+++A STAEAEYV+AA+ C+Q +WM
Sbjct: 1641 FSDADFAGCKIDRKSTSGTCHFLGTSLVSWSSRKQSSVAQSTAEAEYVAAASACSQVLWM 1700
Query: 1488 KNHLEDYGLSLKKVPIYCDNTAAISLSKNPILHSRAKHIEVKYHYIRDHVQKGTLSLEYV 1547
+ L+DYGLS VP+ CDNT+AI+++KNP+ HSR KHIE++YH++RD+V+KGT+ LE+V
Sbjct: 1701 ISTLKDYGLSFSGVPLLCDNTSAINIAKNPVQHSRTKHIEIRYHFLRDNVEKGTIVLEFV 1760
Query: 1548 DT 1549
++
Sbjct: 1761 ES 1762
>ref|NP_909107.1| unnamed protein product [Oryza sativa (japonica cultivar-group)]
Length = 1410
Score = 931 bits (2405), Expect = 0.0
Identities = 488/1023 (47%), Positives = 660/1023 (63%), Gaps = 37/1023 (3%)
Query: 554 RHLSWYLDSGCSRHMTGTRSIFQKLTPLKSGGDVGFGGNQKGKIIGKGSIGDGKTPVIND 613
R SW +DSGCSRHMTG F LT + FG G+++ KG+I ++ D
Sbjct: 365 RSNSWLVDSGCSRHMTGEAKWFTSLTRASGDETITFGDASSGRVMAKGTIKVNDKFMLKD 424
Query: 614 VLLVEGLFHNLLSISQIADKGYDVIFNQTGCKAVSQTDGSVLFSGKRKNDIYKIRSSELL 673
V LV L +NLLS+SQ+ D+ +V F + + + ++ V F R ++
Sbjct: 425 VALVSKLKYNLLSVSQLCDENLEVRFKKDRSRVLDASESPV-FDISRVGRVFFANFDSSA 483
Query: 674 SQKVKCLM-SVNDEQWIWHRRLGHASLRKISQLSKLNLVRGLPHLKYSSEALCEACQKGK 732
+CL+ S N + + WHRRLGH +S++S ++L+RGLP LK + +C C+ GK
Sbjct: 484 PGPSRCLVASENRDLFFWHRRLGHIGFDHLSRISGMDLIRGLPKLKAPKDLVCAPCRHGK 543
Query: 733 FTKKPFKAKNVVSTTRPLELLHIDLFGPVKTESIGGKKYELVIVDDYSRWTWVKFLRHKD 792
T K +V T P +LLH++ GP + +S+GGK Y LV+VDD+SR++WV FL K+
Sbjct: 544 MTSSSHKPVTMVMTDGPGQLLHMNTVGPARVQSVGGKWYVLVVVDDFSRYSWVYFLESKE 603
Query: 793 ETHTMFTNFITQVQKEFQSSVITVRSDHGGEFENKAFEDLFNSQGISHNFSCPRTPQQNG 852
ET F + + EF ++ +RSD+G EF+N AFE +S G+ H FS P PQQNG
Sbjct: 604 ETFGFFQSLARSLALEFPGALRAIRSDNGSEFKNSAFESFCDSSGVEHQFSSPYVPQQNG 663
Query: 853 VVERKNITLQEMARTMMQESSMAKHFWAEAINTACYIQNRISIRPILEKTPYELCKGRQP 912
VVERKN TL EMARTM+ E + + FW EAI+ AC+I NR+ +R IL KTPYEL GR+P
Sbjct: 664 VVERKNRTLVEMARTMLDEFTTPRKFWTEAISAACFISNRVFLRTILHKTPYELRFGRRP 723
Query: 913 DISYFHPFGSTCFMLNTKEQLGKFDSKALKCYFLGYSERSKGFRIYNIIHQTVEESIQIR 972
+S+ FG CF+L + L KF+S++L FLGY+ S+ +R+Y + + E+ ++
Sbjct: 724 KVSHLRVFGCKCFVLKSGN-LDKFESRSLDGIFLGYATHSRAYRVYVLSTNKIVETCEVT 782
Query: 973 FDDKLGSEKSKLF-----ERFADLSIDCSEANQPIKSPEDVAPEAEA---------SEDF 1018
FD+ + ++ F D D + + I P D P + S D
Sbjct: 783 FDEASPGARPEISGVLDESIFVDEDSD-DDDDDSIPPPLDSTPPVQETGSPSTTSPSGDA 841
Query: 1019 PTTSDPLQKK-----------KRIVASHPEELIIGNKDAPV-RTRSMLKPSEETLLSLKG 1066
PTTS ++ + I HP + +IG V R RS L
Sbjct: 842 PTTSSSAAEEIDGGTSGPTAPRHIQNRHPPDSMIGGLGERVTRNRSYD-------LVNSA 894
Query: 1067 FVSLIEPKSVDEALEDKGWIQAMQEELDQFTKNDVWTLMPKPKGFHVIGTKWVFRNKLNE 1126
FV+ EPK+V AL D+ W+ AM EEL+ F +N VW+L+ P GF+VIGTKWVF+NKL E
Sbjct: 895 FVASFEPKNVCHALSDENWVNAMHEELENFERNKVWSLVEPPLGFNVIGTKWVFKNKLGE 954
Query: 1127 KGEVTRNKARLVAQGYSQQEGIDYTETFAPVARLEAIRLLISFSVNHNIILHQMDVKSAF 1186
G + RNKARLVAQG++Q EG+D+ ETFAPVARLEAIR+L++F+ + L QMDVKSAF
Sbjct: 955 DGSIVRNKARLVAQGFTQVEGLDFEETFAPVARLEAIRILLAFAASKGFKLFQMDVKSAF 1014
Query: 1187 LNGYISEEVYVKQPPGFEDNKHPEHVYKLKKSLYGLKQAPRAWYERLSSFLLQNEFVRGK 1246
LNG I EEVYVKQPPGFE+ K P HV+KL K+LYGLKQAPRAWYERL +FLLQN F G
Sbjct: 1015 LNGVIEEEVYVKQPPGFENPKFPNHVFKLDKALYGLKQAPRAWYERLKTFLLQNGFEMGA 1074
Query: 1247 GDNTLFCRTYKNDILIVQIYVDDIIFGSANPSLCKEFSKLMQAEFEMSMMGELKYFLGIQ 1306
D TLF D L+VQIYVDDIIFG ++ +L +FS +M EFEMSMMGEL +FLG+Q
Sbjct: 1075 VDKTLFTLHSGIDFLLVQIYVDDIIFGGSSHALVAQFSDVMSREFEMSMMGELTFFLGLQ 1134
Query: 1307 IDQRPGVTYIHQKKYTLELLKKFNMSDCNISKTPMHPTCILEKEEVSSKVCQKLYRGMIG 1366
I Q ++HQ KY+ ELLKKF+M+DC TPM T L +E +V Q+ YR MIG
Sbjct: 1135 IKQTKEGIFVHQTKYSKELLKKFDMADCKPIATPMATTSSLGPDEDGEEVDQREYRSMIG 1194
Query: 1367 SLLYLTASRPDILFSVHLCARFQSDPRETHLTAVKRILKYLKGTTNLGLMYRKTSEYTLS 1426
SLLYLTASRPDI FSV LCARFQ+ PR +H AVKRI +Y+K T G+ Y +S ++
Sbjct: 1195 SLLYLTASRPDIHFSVCLCARFQASPRTSHRQAVKRIFRYIKSTLEYGIWYSCSSALSVR 1254
Query: 1427 GFCDADFAGDRVERKSTSGSCHFLGSNLVTWSSKRQNTIALSTAEAEYVSAATCCTQTIW 1486
F DADFAG +++RKSTSG+CHFLG++LV+WSS++Q+++A STAEAEYV+AA+ C+Q +W
Sbjct: 1255 AFSDADFAGCKIDRKSTSGTCHFLGTSLVSWSSRKQSSVAQSTAEAEYVAAASACSQVLW 1314
Query: 1487 MKNHLEDYGLSLKKVPIYCDNTAAISLSKNPILHSRAKHIEVKYHYIRDHVQKGTLSLEY 1546
M + L+DYGLS VP+ CDNT+AI+++KNP+ HSR KHIE++YH++RD+V+KGT+ LE+
Sbjct: 1315 MISTLKDYGLSFSGVPLLCDNTSAINIAKNPVQHSRTKHIEIRYHFLRDNVEKGTIVLEF 1374
Query: 1547 VDT 1549
V++
Sbjct: 1375 VES 1377
>gb|AAG52949.1| gag/pol polyprotein [Arabidopsis thaliana]
Length = 1643
Score = 914 bits (2362), Expect = 0.0
Identities = 464/1011 (45%), Positives = 659/1011 (64%), Gaps = 29/1011 (2%)
Query: 558 WYLDSGCSRHMTGTRSIFQKLTPLKSGGDVGFGGNQKGKIIGKGSIGDGKTPVINDVLLV 617
WY DSG SRHMTG+++ + +K +V FGG KG+I GKG + + + P + +V V
Sbjct: 614 WYFDSGASRHMTGSQANLNNYSSVKES-NVMFGGGAKGRIKGKGDLTETEKPHLTNVYFV 672
Query: 618 EGLFHNLLSISQIADKGYDVIFNQTGCKAVSQTDGSVLFSGKRKNDIYKIRSSELLSQKV 677
EGL NL+S+SQ+ D+G V FN+ C A ++ + + L + N+ Y ++
Sbjct: 673 EGLTANLISVSQLCDEGLTVSFNKVKCWATNERNQNTLTGVRTGNNCYMWEEPKI----- 727
Query: 678 KCLMSVNDEQWIWHRRLGHASLRKISQLSKLNLVRGLPHLKYSSEALCEACQKGKFTKKP 737
CL + ++ +WH+RLGH + R +S+L +VRG+P LK+ + +C AC +GK +
Sbjct: 728 -CLRAEKEDPVLWHQRLGHMNARSMSKLVNKEMVRGVPELKHIEKIVCGACNQGKQIRVQ 786
Query: 738 FKAKNVVSTTRPLELLHIDLFGPVKTESIGGKKYELVIVDDYSRWTWVKFLRHKDETHTM 797
K + TT+ L+L+H+DL GP++TESI GK+Y V+VDD+SR+ WV+F+R K ET
Sbjct: 787 HKRVEGIQTTQVLDLIHMDLMGPMQTESIAGKRYVFVLVDDFSRYAWVRFIREKSETANS 846
Query: 798 FTNFITQVQKEFQSSVITVRSDHGGEFENKAFEDLFNSQGISHNFSCPRTPQQNGVVERK 857
F Q++ E + + +RSD GGEF N+AF SQGI H +S PRTPQ NGVVERK
Sbjct: 847 FKILALQLKNEKKMGIKQIRSDRGGEFMNEAFNSFCESQGIFHQYSAPRTPQSNGVVERK 906
Query: 858 NITLQEMARTMMQESSMAKHFWAEAINTACYIQNRISIRPILEKTPYELCKGRQPDISYF 917
N TLQEMAR M+ + + + FWAEAI+TACY+ NR+ +R +KTPYE+ KG++P++SYF
Sbjct: 907 NRTLQEMARAMIHGNGVPEKFWAEAISTACYVINRVYVRLGSDKTPYEIWKGKKPNLSYF 966
Query: 918 HPFGSTCFMLNTKEQLGKFDSKALKCYFLGYSERSKGFRIYNIIHQTVEESIQIRFDDKL 977
FG C+++N K+QLGKFDS++ + +FLGY+ S +R++N +EES+ + FDD
Sbjct: 967 RVFGCVCYIMNDKDQLGKFDSRSEEGFFLGYATNSLAYRVWNKQRGKIEESMNVVFDDGS 1026
Query: 978 GSEKSKLF---------------ERFADLSIDCSEANQPIKSPEDVAPEAEASEDFPTTS 1022
E + E D D + N+ + ++ P A+ D +
Sbjct: 1027 MPELQIIVRNRNEPQTSISNNHGEERNDNQFDNGDINKSGEESDEEVPPAQVHRDHASKD 1086
Query: 1023 ---DPLQKKKRIVASHPEELIIGNKDAPVRTRSMLKPSEETLLSLKGFVSLIEPKSVDEA 1079
DP ++ + G K R + EE + S FVS++EPK+V EA
Sbjct: 1087 IIGDPSGERVTRGVKQDYRQLAGIKQKH-RVMASFACFEEIMFSC--FVSIVEPKNVKEA 1143
Query: 1080 LEDKGWIQAMQEELDQFTKNDVWTLMPKPKGFHVIGTKWVFRNKLNEKGEVTRNKARLVA 1139
LED WI AM+EEL++F+++ VW L+P+P +VIGTKW+F+NK +E G +TRNKARLVA
Sbjct: 1144 LEDHFWILAMEEELEEFSRHQVWDLVPRPPQVNVIGTKWIFKNKFDEVGNITRNKARLVA 1203
Query: 1140 QGYSQQEGIDYTETFAPVARLEAIRLLISFSVNHNIILHQMDVKSAFLNGYISEEVYVKQ 1199
QGY+Q EG+D+ ETFAPVARLE IR L+ + LHQMDVK AFLNG I EEVYV+Q
Sbjct: 1204 QGYTQVEGLDFDETFAPVARLECIRFLLGTACGMGFKLHQMDVKCAFLNGIIEEEVYVEQ 1263
Query: 1200 PPGFEDNKHPEHVYKLKKSLYGLKQAPRAWYERLSSFLLQNEFVRGKGDNTLFCRTYKND 1259
P GFE+ + PE+VYKLKK+LYGLKQAPRAWYERL++FL+ + RG D TLF + +
Sbjct: 1264 PKGFENLEFPEYVYKLKKALYGLKQAPRAWYERLTTFLIVQGYTRGSVDKTLFVKNDVHG 1323
Query: 1260 ILIVQIYVDDIIFGSANPSLCKEFSKLMQAEFEMSMMGELKYFLGIQIDQRPGVTYIHQK 1319
I+I+QIYVDDI+FG + L K F K M EF MSM+GELKYFLG+QI+Q I Q
Sbjct: 1324 IIIIQIYVDDIVFGGTSDKLVKTFVKTMTTEFRMSMVGELKYFLGLQINQTDEGITISQS 1383
Query: 1320 KYTLELLKKFNMSDCNISKTPMHPTCILEKEEVSSKVCQKLYRGMIGSLLYLTASRPDIL 1379
Y L+K+F M + TPM T L K+E KV +KLYRGMIGSLLYLTA+RPD+
Sbjct: 1384 TYAQNLVKRFGMCSSKPAPTPMSTTTKLFKDEKGVKVDEKLYRGMIGSLLYLTATRPDLC 1443
Query: 1380 FSVHLCARFQSDPRETHLTAVKRILKYLKGTTNLGLMYRKTSEYTLSGFCDADFAGDRVE 1439
SV LCAR+QS+P+ +HL AVKRI+KY+ GT N GL Y + + L G+CDAD+ G+ +
Sbjct: 1444 LSVGLCARYQSNPKASHLLAVKRIIKYVSGTINYGLNYTRDTSLVLVGYCDADWGGNLDD 1503
Query: 1440 RKSTSGSCHFLGSNLVTWSSKRQNTIALSTAEAEYVSAATCCTQTIWMKNHLEDYGLSL- 1498
R+ST+G FLGSNL++W SK+QN ++LS+ ++EY++ +CCTQ +WM+ DYG++
Sbjct: 1504 RRSTTGGVFFLGSNLISWHSKKQNCVSLSSTQSEYIALGSCCTQLLWMRQMGLDYGMTFP 1563
Query: 1499 KKVPIYCDNTAAISLSKNPILHSRAKHIEVKYHYIRDHVQKGTLSLEYVDT 1549
+ + CDN +AI++SKNP+ HS KHI +++H++R+ V++ +++E+V T
Sbjct: 1564 DPLLVKCDNESAIAISKNPVQHSVTKHIAIRHHFVRELVEEKQITVEHVPT 1614
>gb|AAN60991.1| Putative Zea mays retrotransposon Opie-2 [Oryza sativa (japonica
cultivar-group)] gi|34902324|ref|NP_912508.1| Putative
Zea mays retrotransposon Opie-2 [Oryza sativa (japonica
cultivar-group)]
Length = 2011
Score = 890 bits (2300), Expect = 0.0
Identities = 476/1022 (46%), Positives = 642/1022 (62%), Gaps = 54/1022 (5%)
Query: 558 WYLDSGCSRHMTGTRSIFQKLTPLKSGGD----VGFGGNQKGKIIGKGSIGDGKTPVIND 613
W LDSGC++HMTG R++F T + GG+ V FG N KGK+IG G I I++
Sbjct: 558 WVLDSGCTQHMTGDRAMF---TTFEVGGNEQEKVTFGDNSKGKVIGLGKIAISNDLSIDN 614
Query: 614 VLLVEGLFHNLLSISQIADKGYDVIFNQTGCKAVSQTDGSVLFSGKRKNDIYKIRSSELL 673
V LV+ L NLLS++QI D F S D S +F G R ++Y +
Sbjct: 615 VSLVKSLNFNLLSVAQICDLVLSCAFFPQEVIVSSLLDKSCVFKGFRYGNLYLGDFNSSE 674
Query: 674 SQKVKCLMSVNDEQWIWHRRLGHASLRKISQLSKLNLVRGLPHLKYSSEALCEACQKGKF 733
+ CL++ W+WHRRL H + ++S+LSK +LV GL +K+ + LC ACQ GK
Sbjct: 675 ANLKTCLVAKTSLGWLWHRRLAHVGMNQLSKLSKRDLVVGLKDVKFEKDKLCSACQAGKQ 734
Query: 734 TKKPFKAKNVVSTTRPLELLHIDLFGPVKTESIGGKKYELVIVDDYSRWTWVKFLRHKDE 793
K+++ST+RPLELLH++ FGP +SIGG + LVIVDDYSR+TW+ FL K
Sbjct: 735 VACSHPTKSIMSTSRPLELLHMEFFGPTTYKSIGGNSHCLVIVDDYSRYTWMFFLHDKSI 794
Query: 794 THTMFTNFITQVQKEFQSSVITVRSDHGGEFENKAFEDLFNSQGISHNFSCPRTPQQNGV 853
+F F + Q EF +++ +RSD+G +F+N ED + GI H S +PQQNGV
Sbjct: 795 VAELFKKFAKRGQNEFNCTLVKIRSDNGSKFKNTNIEDYCDDLGIKHELSATYSPQQNGV 854
Query: 854 VERKNITLQEMARTMMQESSMAKHFWAEAINTACYIQNRISIRPILEKTPYELCKGRQPD 913
VE KN TL EMARTM+ E ++ FWAEAINTAC+ NR+ + +L+KT YEL GR+P+
Sbjct: 855 VEMKNRTLIEMARTMLDEYGVSDSFWAEAINTACHATNRLYLHRLLKKTSYELIVGRKPN 914
Query: 914 ISYFHPFGSTCFMLNTKEQLGKFDSKALKCYFLGYSERSKGFRIYNIIHQTVEESIQIRF 973
++YF FG C++ +L KF+S+ + + LGY+ SK +R+YN VEE+ ++F
Sbjct: 915 VAYFRVFGCKCYIYRKGVRLTKFESRCDEGFLLGYASNSKAYRVYNKNKGIVEETADVQF 974
Query: 974 DDKLGSEKSK----------LFERFADLSID----CSEANQPIKSPED------------ 1007
D+ GS++ L ++SI ++P S +D
Sbjct: 975 DETNGSQEGHENLDDVGDEGLMRAMKNMSIGDVKPIEVEDKPSTSTQDEPSTSATPSQAQ 1034
Query: 1008 VAPEAEASEDFPTTSDPLQKKKRIVASHPEELIIGNKDAPVRTRSMLKPSEETLLSLKGF 1067
V E E ++D P P + + HP + ++G+ V+TRS + ++ F
Sbjct: 1035 VEVEEEKAQDLPM---PPRIHTALSKDHPIDQVLGDISKGVQTRSRVA----SICEHYSF 1087
Query: 1068 VSLIEPKSVDEALEDKGWIQAMQEELDQFTKNDVWTLMPKPKGFHVIGTKWVFRNKLNEK 1127
VS +EPK VDEAL D WI AM +EL+ F +N VWTL+ + + +VIGTKWVFRNK +E
Sbjct: 1088 VSCLEPKHVDEALCDPDWINAMHKELNNFARNKVWTLVERLRDHNVIGTKWVFRNKQDEN 1147
Query: 1128 GEVTRNKARLVAQGYSQQEGIDYTETFAPVARLEAIRLLISFSVNHNIILHQMDVKSAFL 1187
G V RNKAR VAQG++Q EG+D+ ETFAPV RLEAI +L++F+ NI L QMDVKSAFL
Sbjct: 1148 GLVVRNKARFVAQGFTQVEGLDFGETFAPVTRLEAICILLAFASCFNIKLFQMDVKSAFL 1207
Query: 1188 NGYISEEVYVKQPPGFEDNKHPEHVYKLKKSLYGLKQAPRAWYERLSSFLLQNEFVRGKG 1247
NG I+E V+V+QPPGFED K+P HVYKL K+LYGLKQAPRAWYERL FLL +F GK
Sbjct: 1208 NGEIAELVFVEQPPGFEDPKYPNHVYKLSKALYGLKQAPRAWYERLRDFLLSKDFKIGKV 1267
Query: 1248 DNTLFCRTYKNDILIVQIYVDDIIFGSANPSLCKEFSKLMQAEFEMSMMGELKYFLGIQI 1307
D TLF + +D + QIYVDDIIFG N CKEF +M EFEMSM+GEL +F G+QI
Sbjct: 1268 DTTLFTKIIGDDFFVCQIYVDDIIFGCTNEVFCKEFGDMMSREFEMSMIGELSFFHGLQI 1327
Query: 1308 DQRPGVTYIHQKKYTLELLKKFNMSDCNISKTPMHPTCILEKEEVSSKVCQKLYRGMIGS 1367
Q T F + D KTPM L+ +E V KLYR MIGS
Sbjct: 1328 KQLKDGT--------------FGLEDAKPIKTPMATNGHLDLDEGGKPVDLKLYRSMIGS 1373
Query: 1368 LLYLTASRPDILFSVHLCARFQSDPRETHLTAVKRILKYLKGTTNLGLMYRKTSEYTLSG 1427
LLYLTASRPDI+FSV +CARFQ+ P+E HL AVKRIL+YLK ++ +GL Y K +++ L G
Sbjct: 1374 LLYLTASRPDIMFSVCMCARFQAAPKECHLVAVKRILRYLKHSSTIGLWYPKGAKFKLVG 1433
Query: 1428 FCDADFAGDRVERKSTSGSCHFLGSNLVTWSSKRQNTIALSTAEAEYVSAATCCTQTIWM 1487
+ D+D+AG +V+RKSTSGSC LG +LV+WSSK+QN +AL AEAEYVSA +CC Q +WM
Sbjct: 1434 YSDSDYAGCKVDRKSTSGSCQMLGRSLVSWSSKKQNFVALFIAEAEYVSAGSCCAQLLWM 1493
Query: 1488 KNHLEDYGLSLKKVPIYCDNTAAISLSKNPILHSRAKHIEVKYHYIRDHVQKGTLSLEYV 1547
K L DYG+S K P+ C+N +AI ++ NP+ HSR KHI++++H++RDHV K + + ++
Sbjct: 1494 KQILLDYGISFTKTPLLCENDSAIKIANNPVQHSRTKHIDIRHHFLRDHVAKCDIVISHI 1553
Query: 1548 DT 1549
T
Sbjct: 1554 RT 1555
>gb|AAV31277.1| putative polyprotein [Oryza sativa (japonica cultivar-group)]
Length = 1577
Score = 883 bits (2281), Expect = 0.0
Identities = 469/1018 (46%), Positives = 636/1018 (62%), Gaps = 48/1018 (4%)
Query: 558 WYLDSGCSRHMTGTRSIFQKLTPLKSGGD-VGFGGNQKGKIIGKGSIGDGKTPVINDVLL 616
W LDSGC++HMTG R++F ++ + V FG N KGK+IG G I I++V L
Sbjct: 549 WVLDSGCTQHMTGDRAMFTTFEVGRNEQEKVTFGDNSKGKVIGLGKIAISNDLSIDNVSL 608
Query: 617 VEGLFHNLLSISQIADKGYDVIFNQTGCKAVSQTDGSVLFSGKRKNDIYKIRSSELLSQK 676
V+ L NLLS++QI D F S D S +F G R ++Y + + +
Sbjct: 609 VKSLNFNLLSVAQICDLSLSCAFFPQEVIVSSLLDKSCVFKGFRYGNLYLVDFNSSEANL 668
Query: 677 VKCLMSVNDEQWIWHRRLGHASLRKISQLSKLNLVRGLPHLKYSSEALCEACQKGKFTKK 736
CL++ W+WHRRL H + ++S+ SK +LV GL +K+ + LC ACQ GK
Sbjct: 669 KTCLVAKTSLGWLWHRRLAHVGMNQLSKFSKRDLVMGLKDVKFEKDKLCSACQAGKQVAC 728
Query: 737 PFKAKNVVSTTRPLELLHIDLFGPVKTESIGGKKYELVIVDDYSRWTWVKFLRHKDETHT 796
K+++ST++PLELLH+DLF P +SIGG + LVIVDDYSR+TWV FL K
Sbjct: 729 SHPTKSIMSTSKPLELLHMDLFDPTTYKSIGGNSHCLVIVDDYSRYTWVFFLHDKSIVAD 788
Query: 797 MFTNFITQVQKEFQSSVITVRSDHGGEFENKAFEDLFNSQGISHNFSCPRTPQQNGVVER 856
+F F + Q EF +++ +RS+ G EF+N ED + GI H +PQQNGVVER
Sbjct: 789 LFKKFAKRAQNEFSCTLVKIRSNIGSEFKNTNIEDYCDDLGIKHELFATYSPQQNGVVER 848
Query: 857 KNITLQEMARTMMQESSMAKHFWAEAINTACYIQNRISIRPILEKTPYELCKGRQPDISY 916
KN TL EMARTM+ E ++ FWAEAINTAC+ NR+ + +L+KT YE+ GR+P+I+Y
Sbjct: 849 KNRTLIEMARTMLDEYGVSDSFWAEAINTACHATNRLYLHRVLKKTSYEVIVGRKPNIAY 908
Query: 917 FHPFGSTCFMLNTKEQLGKFDSKALKCYFLGYSERSKGFRIYNIIHQTVEESIQIRFDDK 976
F FG C++ +L KF+S+ + + LGY+ +SK +R+YN VEE+ ++FD+
Sbjct: 909 FRVFGCKCYIHRKGVRLTKFESRCDEGFLLGYASKSKAYRVYNKNKGIVEETADVQFDET 968
Query: 977 LGSEKSKLFERFADLSIDCSEANQPIKSPEDVAP------EAEASEDFPTTSD------- 1023
GS++ E D+ + S DV P + +++D P+TS
Sbjct: 969 NGSQEGH--ENLDDVGDEGLMRVMKNMSIGDVKPIEVEDKPSTSTQDEPSTSAMPSQAQV 1026
Query: 1024 ------------PLQKKKRIVASHPEELIIGNKDAPVRTRSMLKPSEETLLSLKGFVSLI 1071
P + + HP + ++G+ V+TRS + ++ FVS +
Sbjct: 1027 EVEEEKAQEPPMPPRIHTALSKDHPIDQVLGDISKGVQTRSRVT----SICEHYSFVSCL 1082
Query: 1072 EPKSVDEALEDKGWIQAMQEELDQFTKNDVWTLMPKPKGFHVIGTKWVFRNKLNEKGEVT 1131
E K VDEAL D W+ AM EEL F +N VWTL+ +P+ +VIGTKWVFRNK +E G V
Sbjct: 1083 ERKHVDEALCDPDWMNAMHEELKNFARNKVWTLVERPRDHNVIGTKWVFRNKQDENGLVV 1142
Query: 1132 RNKARLVAQGYSQQEGIDYTETFAPVARLEAIRLLISFSVNHNIILHQMDVKSAFLNGYI 1191
RNKARLVAQG++Q EG+D+ ETFAPVARLEAI +L++F+ +I L QMDVKSAFLN
Sbjct: 1143 RNKARLVAQGFTQVEGLDFGETFAPVARLEAICILLAFASCFDIKLFQMDVKSAFLN--- 1199
Query: 1192 SEEVYVKQPPGFEDNKHPEHVYKLKKSLYGLKQAPRAWYERLSSFLLQNEFVRGKGDNTL 1251
D K+P HVYKL K+LYGL+QAPRAWYERL FLL +F GK D TL
Sbjct: 1200 -------------DTKYPNHVYKLSKALYGLRQAPRAWYERLRDFLLSKDFKIGKVDITL 1246
Query: 1252 FCRTYKNDILIVQIYVDDIIFGSANPSLCKEFSKLMQAEFEMSMMGELKYFLGIQIDQRP 1311
F + +D + QIYVDDIIFGS N CKEF +M EFEMSM+GEL +FLG+QI Q
Sbjct: 1247 FTKIIGDDFFVYQIYVDDIIFGSTNEVFCKEFGDMMSREFEMSMIGELSFFLGLQIKQLK 1306
Query: 1312 GVTYIHQKKYTLELLKKFNMSDCNISKTPMHPTCILEKEEVSSKVCQKLYRGMIGSLLYL 1371
T++ Q KY +LLK+F + D KTPM L+ +E V KLYR MIGSLLYL
Sbjct: 1307 NGTFVSQTKYIKDLLKRFGLEDAKPIKTPMATNGHLDLDEGGKPVDLKLYRSMIGSLLYL 1366
Query: 1372 TASRPDILFSVHLCARFQSDPRETHLTAVKRILKYLKGTTNLGLMYRKTSEYTLSGFCDA 1431
T SRPDI+FSV +CARFQ+ P+E HL AVKRIL+YLK ++ +GL Y K +++ L G+ D
Sbjct: 1367 TVSRPDIMFSVCMCARFQAAPKECHLVAVKRILRYLKHSSTIGLWYPKGAKFKLVGYSDP 1426
Query: 1432 DFAGDRVERKSTSGSCHFLGSNLVTWSSKRQNTIALSTAEAEYVSAATCCTQTIWMKNHL 1491
D+AG +V+RKSTS SC LG +LV+WSSK+QN++ALSTAE EYVSA +CC Q +WMK L
Sbjct: 1427 DYAGCKVDRKSTSSSCQMLGRSLVSWSSKKQNSVALSTAETEYVSAGSCCAQLLWMKQTL 1486
Query: 1492 EDYGLSLKKVPIYCDNTAAISLSKNPILHSRAKHIEVKYHYIRDHVQKGTLSLEYVDT 1549
DYG+S K P+ CDN AI ++ NP+ HSR KHI++++H++RDHV K + + ++ T
Sbjct: 1487 LDYGISFTKTPLLCDNDGAIKIANNPVQHSRTKHIDIRHHFLRDHVAKCDIVISHIRT 1544
>emb|CAE03782.2| OSJNBa0063G07.6 [Oryza sativa (japonica cultivar-group)]
gi|50923031|ref|XP_471876.1| OSJNBa0063G07.6 [Oryza
sativa (japonica cultivar-group)]
Length = 1539
Score = 863 bits (2231), Expect = 0.0
Identities = 461/1019 (45%), Positives = 629/1019 (61%), Gaps = 63/1019 (6%)
Query: 558 WYLDSGCSRHMTGTRSIFQKLTPLKSGGD----VGFGGNQKGKIIGKGSIGDGKTPVIND 613
W LDSGC++HMTG R++F T + GG+ V F N K K+IG G I I++
Sbjct: 524 WVLDSGCTQHMTGDRAMF---TTFEVGGNEQEKVTFVDNSKRKVIGLGKIAISNDLSIDN 580
Query: 614 VLLVEGLFHNLLSISQIADKGYDVIFNQTGCKAVSQTDGSVLFSGKRKNDIYKIRSSELL 673
V V+ L NLLS++QI D G F S D S +F G R ++Y + +
Sbjct: 581 VSFVKSLNFNLLSVAQICDLGLSCAFFPQEVIVSSLLDKSCVFKGFRYGNLYFVDFNSSE 640
Query: 674 SQKVKCLMSVNDEQWIWHRRLGHASLRKISQLSKLNLVRGLPHLKYSSEALCEACQKGKF 733
+ CL++ W+WHRRL H + ++S+LSK +LV GL +K+ + LC ACQ GK
Sbjct: 641 ANLKTCLVAKTSLGWLWHRRLAHVGMNQLSKLSKRDLVVGLKDVKFEKDKLCSACQAGKQ 700
Query: 734 TKKPFKAKNVVSTTRPLELLHIDLFGPVKTESIGGKKYELVIVDDYSRWTWVKFLRHKDE 793
K+++ST+RPLELLH+DLFGP +SIGG + LVIVDDYSR+TWV FL K
Sbjct: 701 VACSHPTKSIMSTSRPLELLHMDLFGPTTYKSIGGNSHCLVIVDDYSRYTWVFFLHDKSI 760
Query: 794 THTMFTNFITQVQKEFQSSVITVRSDHGGEFENKAFEDLFNSQGISHNFSCPRTPQQNGV 853
+F + Q EF +++ +RSD+G EF+N ED + GI H S +PQQNGV
Sbjct: 761 VAELFKKIAKRAQNEFSCTLVKIRSDNGSEFKNTNIEDYCDDLGIKHELSATYSPQQNGV 820
Query: 854 VERKNITLQEMARTMMQESSMAKHFWAEAINTACYIQNRISIRPILEKTPYELCKGRQPD 913
VERKN TL EMARTM+ E ++ FWAEAINTAC+ NR + +L+ T YEL GR+P+
Sbjct: 821 VERKNRTLIEMARTMLDEYGVSDSFWAEAINTACHATNRFYLHRLLKNTSYELIVGRKPN 880
Query: 914 ISYFHPFGSTCFMLNTKEQLGKFDSKALKCYFLGYSERSKGFRIYNIIHQTVEESIQIRF 973
++YF FG C++ +L KF+S+ + + LGY+ SK +R+YN TVEE+ ++F
Sbjct: 881 VAYFRVFGCKCYIYRKGVRLTKFESRCDEGFLLGYASNSKAYRVYNKNKGTVEETADVQF 940
Query: 974 DDKLGSE------------------KSKLFERFADLSIDCSEANQPIKSPEDVAPEAEAS 1015
D+ GS+ K+ F + ++ + P A ++A
Sbjct: 941 DETNGSQEGHENLDDVGDEGLIRAMKNMSFGDVKPIEVEDKPSTSTQDEPSTFATPSQAQ 1000
Query: 1016 ---EDFPTTSDPLQKKKRIVAS--HPEELIIGNKDAPVRTRSMLKPSEETLLSLKGFVSL 1070
E+ P+ + S HP + ++G+ V+T S + ++ FVS
Sbjct: 1001 VEVEEEKAQDPPIPPRIHTTLSKDHPIDQVLGDISKGVQTLSRV----ASICEHYSFVSC 1056
Query: 1071 IEPKSVDEALEDKGWIQAMQEELDQFTKNDVWTLMPKPKGFHVIGTKWVFRNKLNEKGEV 1130
+EPK VDEAL D W+ AM EEL+ F +N VWTL+ +P+ +VIGTKWVFRNK +E G V
Sbjct: 1057 LEPKHVDEALCDPDWMNAMHEELNNFARNKVWTLVERPRDHNVIGTKWVFRNKQDENGLV 1116
Query: 1131 TRNKARLVAQGYSQQEGIDYTETFAPVARLEAIRLLISFSVNHNIILHQMDVKSAFLNGY 1190
RNKARLVAQG++Q EG+D+ ETFAPVARLEAI +L++F+ +I L QMDVKSAFLNG
Sbjct: 1117 VRNKARLVAQGFTQVEGLDFGETFAPVARLEAICILLAFASWFDIKLFQMDVKSAFLNGE 1176
Query: 1191 ISEEVYVKQPPGFEDNKHPEHVYKLKKSLYGLKQAPRAWYERLSSFLLQNEFVRGKGDNT 1250
I+E V+V+QPPGFED K+P H +K+ GK D T
Sbjct: 1177 IAELVFVEQPPGFEDPKYPNHDFKI-----------------------------GKVDTT 1207
Query: 1251 LFCRTYKNDILIVQIYVDDIIFGSANPSLCKEFSKLMQAEFEMSMMGELKYFLGIQIDQR 1310
LF + +D + QIYVDDIIFGS N CKEF +M EFEMSM+GEL +FLG+QI Q
Sbjct: 1208 LFTKIIGDDFFVCQIYVDDIIFGSTNEVFCKEFGDMMSREFEMSMIGELSFFLGLQIKQL 1267
Query: 1311 PGVTYIHQKKYTLELLKKFNMSDCNISKTPMHPTCILEKEEVSSKVCQKLYRGMIGSLLY 1370
T++ Q KY +LLK+F + D KTPM L+ +E V KLYR MIGSLLY
Sbjct: 1268 KDGTFVSQTKYIKDLLKRFGLEDAKPIKTPMATNGHLDLDEGGKPVDLKLYRSMIGSLLY 1327
Query: 1371 LTASRPDILFSVHLCARFQSDPRETHLTAVKRILKYLKGTTNLGLMYRKTSEYTLSGFCD 1430
LTASRPDI+FSV +CA FQ+ P+E HL AVKRIL+YLK ++ +GL Y K +++ L G+ D
Sbjct: 1328 LTASRPDIMFSVCMCAWFQAAPKECHLVAVKRILRYLKYSSTIGLWYPKGAKFKLVGYSD 1387
Query: 1431 ADFAGDRVERKSTSGSCHFLGSNLVTWSSKRQNTIALSTAEAEYVSAATCCTQTIWMKNH 1490
+D+AG +V+R STSGSC LG +LV+WSSK+QN++ALSTAEAEYVSA +CC Q +WMK
Sbjct: 1388 SDYAGCKVDRNSTSGSCQMLGRSLVSWSSKKQNSVALSTAEAEYVSAGSCCAQLLWMKQT 1447
Query: 1491 LEDYGLSLKKVPIYCDNTAAISLSKNPILHSRAKHIEVKYHYIRDHVQKGTLSLEYVDT 1549
L DYG+S K P+ CDN +AI ++ NP+ HSR KHI++++H++RDHV K + + ++ T
Sbjct: 1448 LLDYGISFTKTPLLCDNDSAIKIANNPVQHSRTKHIDIRHHFLRDHVAKCDIVISHIRT 1506
>gb|AAW57789.1| putative polyprotein [Oryza sativa (japonica cultivar-group)]
Length = 1799
Score = 852 bits (2201), Expect = 0.0
Identities = 468/1029 (45%), Positives = 631/1029 (60%), Gaps = 70/1029 (6%)
Query: 554 RHLSWYLDSGCSRHMTGTRSIFQKLTPLKSGGDVGFGGNQKGKIIGKGSIGDGKTPVIND 613
R SW +DSGCSRHMTG F LT + FG G+++ KG+I ++ D
Sbjct: 775 RSNSWLVDSGCSRHMTGEAKWFTSLTRASGDETITFGDASSGRVMAKGTIKVNDKFMLKD 834
Query: 614 VLLVEGLFHNLLSISQIADKGYDVIFNQTGCKAVSQTDGSVLFSGKRKNDIYKIRSSELL 673
V LV L +NLLS+SQ+ D+ +V F + + + ++ V F R ++
Sbjct: 835 VALVSKLKYNLLSVSQLCDENLEVRFKKDRSRVLDASESPV-FDISRVGRVFFANFDSSA 893
Query: 674 SQKVKCLM-SVNDEQWIWHRRLGHASLRKISQLSKLNLVRGLPHLKYSSEALCEACQKGK 732
+CL+ S N + + WHRRLGH +S++S ++L+RGLP LK + +C C+ GK
Sbjct: 894 PGPSRCLIASENRDLFFWHRRLGHIGFDHLSRISGMDLIRGLPKLKVPKDLVCAPCRHGK 953
Query: 733 FTKKPFKAKNVVSTTRPLELLHIDLFGPVKTESIGGK------KYELVIVDDYSRWTWVK 786
T K +V T P +LLH+D GP + +S+GGK + L++V W W
Sbjct: 954 MTSSSHKPVTMVMTDGPGQLLHMDTVGPARVQSVGGKWRKHLASFSLLLV----VWLWSF 1009
Query: 787 FLRHKDETHTMFTNFITQVQKEFQSSVITVRSDHGGEFENKAFEDLFNSQGISHNFSCPR 846
+ + M N SVI + S +H FS P
Sbjct: 1010 LVLFEPFAVIMALN---SKILHLNLSVILLES--------------------NHQFSSPY 1046
Query: 847 TPQQNGVVERKNITLQEMARTMMQESSMAKHFWAEAINTACYIQNRISIRPILEKTPYEL 906
PQQNGVVERKN TL EMARTM+ E + + FW EAI+ AC+I NR+ +R IL KTPYEL
Sbjct: 1047 VPQQNGVVERKNRTLVEMARTMLDEFTTPRKFWTEAISAACFISNRVFLRTILHKTPYEL 1106
Query: 907 CKGRQPDISYFHPFGSTCFMLNTKEQLGKFDSKALKCYFLGYSERSKGFRIYNIIHQTVE 966
GR+P +S+ FG CF+L + L KF+S++L FLGY+ S+ +R+Y + +
Sbjct: 1107 RFGRRPKVSHLRVFGCKCFVLKS-GNLDKFESRSLDGIFLGYATHSRAYRVYVLSTNKIV 1165
Query: 967 ESIQIRFDDKLGSEKSKLF-----ERFADLSIDCSEANQPIKSPEDVAPEAE-------- 1013
E+ ++ FD+ + ++ F D D + + I P D P +
Sbjct: 1166 ETCEVTFDEASPGARPEISGVPDESIFVDEDSD-DDDDDSISPPLDSTPPVQETGSPLTT 1224
Query: 1014 -ASEDFPTTSDPLQKK-----------KRIVASHPEELIIGNKDAPV-RTRSMLKPSEET 1060
S D PTTS ++ + I HP + +IG V R RS
Sbjct: 1225 SPSGDAPTTSSSAAEEIDGGTSGPTAPRHIQNRHPPDSMIGGLGERVTRNRSY------- 1277
Query: 1061 LLSLKGFVSLIEPKSVDEALEDKGWIQAMQEELDQFTKNDVWTLMPKPKGFHVIGTKWVF 1120
L FV+ EPK+V AL D+ W+ AM EEL+ F +N VW+L+ P GF VIGTKWVF
Sbjct: 1278 ELVNSAFVASFEPKNVCHALSDENWVNAMHEELENFERNKVWSLVEPPLGFSVIGTKWVF 1337
Query: 1121 RNKLNEKGEVTRNKARLVAQGYSQQEGIDYTETFAPVARLEAIRLLISFSVNHNIILHQM 1180
+NKL E G + RNKARLVAQG++Q EG+D+ ETFAPVARLEAIR+L++F+ + L QM
Sbjct: 1338 KNKLGEDGSIVRNKARLVAQGFTQVEGLDFEETFAPVARLEAIRILLAFAASKGFKLFQM 1397
Query: 1181 DVKSAFLNGYISEEVYVKQPPGFEDNKHPEHVYKLKKSLYGLKQAPRAWYERLSSFLLQN 1240
DVKSAFLNG I EEVYVKQPPGFE+ K P HV+KL K+LYGLKQAPRAWYERL +FLLQN
Sbjct: 1398 DVKSAFLNGVIEEEVYVKQPPGFENPKFPNHVFKLDKALYGLKQAPRAWYERLKTFLLQN 1457
Query: 1241 EFVRGKGDNTLFCRTYKNDILIVQIYVDDIIFGSANPSLCKEFSKLMQAEFEMSMMGELK 1300
F G D TLF D L+VQIYVDDIIFG ++ +L +F +M EFEMSMMGEL
Sbjct: 1458 GFEMGAVDKTLFTLHSGIDFLLVQIYVDDIIFGGSSHALVAQFFDVMSREFEMSMMGELT 1517
Query: 1301 YFLGIQIDQRPGVTYIHQKKYTLELLKKFNMSDCNISKTPMHPTCILEKEEVSSKVCQKL 1360
+FLG+QI Q ++HQ KY+ ELLKKF+M+DC TPM T L +E +V Q+
Sbjct: 1518 FFLGLQIKQTKEGIFVHQTKYSKELLKKFDMADCKPIATPMATTSSLGPDEDGEEVDQRE 1577
Query: 1361 YRGMIGSLLYLTASRPDILFSVHLCARFQSDPRETHLTAVKRILKYLKGTTNLGLMYRKT 1420
YR MIGSLLYLTASRPDI FSV LCARFQ+ PR +H AVKRI +Y+K T G+ Y +
Sbjct: 1578 YRSMIGSLLYLTASRPDIHFSVCLCARFQASPRTSHRQAVKRIFRYIKSTLEYGIWYSCS 1637
Query: 1421 SEYTLSGFCDADFAGDRVERKSTSGSCHFLGSNLVTWSSKRQNTIALSTAEAEYVSAATC 1480
S ++ F DADFAG +++RKSTSG+CHFLG++LV+WSS++Q+++A STAEAEYV+AA+
Sbjct: 1638 SALSVRAFSDADFAGCKIDRKSTSGTCHFLGTSLVSWSSRKQSSVAQSTAEAEYVAAASA 1697
Query: 1481 CTQTIWMKNHLEDYGLSLKKVPIYCDNTAAISLSKNPILHSRAKHIEVKYHYIRDHVQKG 1540
C+Q +WM + L+DYGLS VP+ CDNT+AI+++KNP+ HSR KHIE++YH++RD+V+KG
Sbjct: 1698 CSQVLWMISTLKDYGLSFSGVPLLCDNTSAINIAKNPVQHSRTKHIEIRYHFLRDNVEKG 1757
Query: 1541 TLSLEYVDT 1549
T+ LE+V++
Sbjct: 1758 TIVLEFVES 1766
>ref|NP_912905.1| unnamed protein product [Oryza sativa (japonica cultivar-group)]
Length = 940
Score = 843 bits (2178), Expect = 0.0
Identities = 435/877 (49%), Positives = 577/877 (65%), Gaps = 37/877 (4%)
Query: 703 SQLSKLNLVRGLPHLKYSSEALCEACQKGKFTKKPFKAKNVVSTTRPLELLHIDLFGPVK 762
SQ SK + GL ++++ + +C ACQ GK KNV++TTRPLELLH+DLFGP+
Sbjct: 34 SQTSKARHILGLTNIQFEKDRVCSACQAGKQIGAHHPVKNVMTTTRPLELLHMDLFGPIA 93
Query: 763 TESIGGKKYELVIVDDYSRWTWVKFLRHKDETHTMFTNFITQVQKEFQSSVITVRSDHGG 822
SIGG KY LVIVDD+S +TWV FL K ET +F F + Q EF + +RSD+
Sbjct: 94 YLSIGGNKYGLVIVDDFSCFTWVFFLHDKSETQAIFKKFARRAQNEFDLKIKNIRSDNVK 153
Query: 823 EFENKAFEDLFNSQGISHNFSCPRTPQQNGVVERKNITLQEMARTMMQESSMAKHFWAEA 882
EF+N E + +GI H FS P +PQQNGV ERKN TL E+ARTM+ E + FWAEA
Sbjct: 154 EFKNTCIESFLDEEGIKHEFSAPYSPQQNGVAERKNRTLIEIARTMLDEYKTSDRFWAEA 213
Query: 883 INTACYIQNRISIRPILEKTPYELCKGRQPDISYFHPFGSTCFMLNTKEQLGKFDSKALK 942
+NT C+ NR+ + +L+KTPYEL G +P++SYF FGS C++LN K + KF K
Sbjct: 214 VNTVCHDINRLYLHRLLKKTPYELLTGNKPNVSYFRVFGSKCYILNKKARSSKFAPKVDG 273
Query: 943 CYFLGYSERSKGFRIYNIIHQTVEESIQIRFDDKLGSEKSKL--------------FERF 988
+ LGY +R++N VE + + FD+ GS+ ++ +R
Sbjct: 274 GFLLGYGSNECAYRVFNKTSGIVEIAPDVTFDETNGSQVEQVDSHVLGEEEDPREAIKRL 333
Query: 989 ADLSIDCSEANQPIKSPEDVAPEAEASEDFPTTSDPLQKKK------------------R 1030
A + E Q S V P + P+TS Q ++
Sbjct: 334 ALGDVRPREPQQGASSSTQVEPPTSTQANDPSTSSLDQGEEGEQVPPSSINLAHPRIHQS 393
Query: 1031 IVASHPEELIIGNKDAPVRTRSMLKPSEETLLSLKGFVSLIEPKSVDEALEDKGWIQAMQ 1090
I HP + I+G+ + V TRS + E FVS +EP V+EAL D W+ AMQ
Sbjct: 394 IQRDHPTDNILGDINKGVSTRSHIANFCEHY----SFVSSLEPLRVEEALNDPDWVMAMQ 449
Query: 1091 EELDQFTKNDVWTLMPKPKGFHVIGTKWVFRNKLNEKGEVTRNKARLVAQGYSQQEGIDY 1150
EEL+ FT+N+VWTL+ + + +VIGTKW+FRNK +E G V RNKARLVAQG++Q EG+D+
Sbjct: 450 EELNNFTRNEVWTLVERSRQ-NVIGTKWIFRNKQDEAGVVIRNKARLVAQGFTQIEGLDF 508
Query: 1151 TETFAPVARLEAIRLLISFSVNHNIILHQMDVKSAFLNGYISEEVYVKQPPGFEDNKHPE 1210
ETFAPVARLE+IR+L++F+ N N L+QMDVKSAFLNG I+E VYV+QPPGF+D K+P
Sbjct: 509 GETFAPVARLESIRILLTFATNLNFKLYQMDVKSAFLNGLINELVYVEQPPGFKDPKYPN 568
Query: 1211 HVYKLKKSLYGLKQAPRAWYERLSSFLLQNEFVRGKGDNTLFCRTYKNDILIVQIYVDDI 1270
HVYKL K+LY LKQAPRAWYE L +FL++N F GK D+TLF + + NDI + QIYVDDI
Sbjct: 569 HVYKLHKALYELKQAPRAWYECLRNFLVKNGFEIGKADSTLFTKRHDNDIFVCQIYVDDI 628
Query: 1271 IFGSANPSLCKEFSKLMQAEFEMSMMGELKYFLGIQIDQRPGVTYIHQKKYTLELLKKFN 1330
IFGS N S +EFS++M FEMSMMGELK+FLG+QI Q T+I Q KY ++LKKF
Sbjct: 629 IFGSTNKSFSEEFSRMMTKRFEMSMMGELKFFLGLQIKQLKEGTFICQTKYLKDMLKKFG 688
Query: 1331 MSDCNISKTPMHPTCILEKEEVSSKVCQKLYRGMIGSLLYLTASRPDILFSVHLCARFQS 1390
M + TPM L+ E V QK+YR +IGSLLYL ASRPDI+ SV +CARFQ+
Sbjct: 689 MENAKPIHTPMPSNGHLDLNEQGKDVDQKVYRSIIGSLLYLCASRPDIMLSVCMCARFQA 748
Query: 1391 DPRETHLTAVKRILKYLKGTTNLGLMYRKTSEYTLSGFCDADFAGDRVERKSTSGSCHFL 1450
P+E HL AVKRIL+YL T NLGL Y K + + L G+ DAD+AG +V+RKSTSG+C FL
Sbjct: 749 APKECHLVAVKRILRYLVHTPNLGLWYPKGARFDLIGYADADYAGCKVDRKSTSGTCQFL 808
Query: 1451 GSNLVTWSSKRQNTIALSTAEAEYVSAATCCTQTIWMKNHLEDYGLSLKKVPIYCDNTAA 1510
G +LV+WSSK+QN++ALSTAEAEY+S +CC Q IWMK L DYGL++ K+P+ CDN +A
Sbjct: 809 GRSLVSWSSKKQNSVALSTAEAEYISTGSCCAQLIWMKQTLRDYGLNVSKIPLLCDNESA 868
Query: 1511 ISLSKNPILHSRAKHIEVKYHYIRDHVQKGTLSLEYV 1547
I ++ NP+ HSR KHI++++H++RDH +G + +++V
Sbjct: 869 IKIANNPVQHSRTKHIDIRHHFLRDHSTRGDIDIQHV 905
>ref|XP_468929.1| putative polyprotein [Oryza sativa (japonica cultivar-group)]
gi|28209450|gb|AAO37468.1| putative polyprotein [Oryza
sativa (japonica cultivar-group)]
Length = 1128
Score = 832 bits (2149), Expect = 0.0
Identities = 429/887 (48%), Positives = 585/887 (65%), Gaps = 29/887 (3%)
Query: 688 WIWHRRLGHASLRKISQLSKLNLVRGLPHLKYSSEALCEACQKGKFTKKPFKAKNVVSTT 747
W+WHRRL H + ++S+LSK +LV GL +K+ + LC ACQ K K+++ST+
Sbjct: 213 WLWHRRLAHVGMNQLSKLSKRDLVVGLKDVKFEKDKLCSACQASKQVACSHPTKSIMSTS 272
Query: 748 RPLELLHIDLFGPVKTESIGGKKYELVIVDDYSRWTWVKFLRHKDETHTMFTNFITQVQK 807
RPLELLH+DLFGP +SIGG + LVIVDDYS +TWV FL K +F F + Q
Sbjct: 273 RPLELLHMDLFGPTTYKSIGGNSHCLVIVDDYSCYTWVFFLHDKCIVAELFKKFAKRAQN 332
Query: 808 EFQSSVITVRSDHGGEFENKAFEDLFNSQGISHNFSCPRTPQQNGVVERKNITLQEMART 867
EF +++ +RSD+G +F+N ED + I H S +PQQNGVVERKN TL EMART
Sbjct: 333 EFSCTLVKIRSDNGSKFKNTNIEDYCDDLSIKHELSATYSPQQNGVVERKNRTLIEMART 392
Query: 868 MMQESSMAKHFWAEAINTACYIQNRISIRPILEKTPYELCKGRQPDISYFHPFGSTCFML 927
M+ E ++ FWAEAINTAC+ NR+ + +L+KT YEL GR+P+++YF FG C++
Sbjct: 393 MLDEYGVSDSFWAEAINTACHATNRLYLHRLLKKTSYELIVGRKPNVAYFRVFGCKCYIY 452
Query: 928 NTKEQLGKFDSKALKCYFLGYSERSKGFRIYNIIHQTVEESIQIRFDDKLGSEKS-KLFE 986
+L KF+S+ + + LGY+ SK +R+YN VEE+ ++FD+ GS++ + +
Sbjct: 453 RKGVRLTKFESRCDEGFLLGYASNSKAYRVYNKNKGIVEETADVQFDETNGSQEGHENLD 512
Query: 987 RFADLSIDCSEANQPIKSPEDVAPEAEAS---EDFPTTS----------------DPLQK 1027
D + + N I + + E + S +D P+TS DP
Sbjct: 513 DVGDEGLMRAMKNMSIGDVKPIEVEDKPSTSTQDEPSTSASPSQAQVEVEKEKAQDPPMP 572
Query: 1028 KKRIVA---SHPEELIIGNKDAPVRTRSMLKPSEETLLSLKGFVSLIEPKSVDEALEDKG 1084
+ A HP + ++G+ V+TRS + ++ FVS +EPK VDEAL D
Sbjct: 573 PRIYTALSKDHPIDQVLGDISKGVQTRSPVA----SICEHYSFVSCLEPKHVDEALYDPD 628
Query: 1085 WIQAMQEELDQFTKNDVWTLMPKPKGFHVIGTKWVFRNKLNEKGEVTRNKARLVAQGYSQ 1144
W+ A+ EEL+ F +N VWTL+ +P+ +VIGTKWVFRNK +E V RNKARLVAQG++Q
Sbjct: 629 WMNAIHEELNNFARNKVWTLVERPRDHNVIGTKWVFRNKQDENRLVVRNKARLVAQGFTQ 688
Query: 1145 QEGIDYTETFAPVARLEAIRLLISFSVNHNIILHQMDVKSAFLNGYISEEVYVKQPPGFE 1204
E +D+ ETF PVARLEAIR+L++F+ +I L QMDVKSAFLNG I+E V+V+QPPGF+
Sbjct: 689 VEDLDFGETFGPVARLEAIRILLAFASCFDIKLFQMDVKSAFLNGEIAELVFVEQPPGFD 748
Query: 1205 DNKHPEHVYKLKKSLYGLKQAPRAWYERLSSFLLQNEFVRGKGDNTLFCRTYKNDILIVQ 1264
D K+P HVYKL K+LYGLKQAPRAWYERL FLL +F GK D TLF + +D + Q
Sbjct: 749 DPKYPNHVYKLSKALYGLKQAPRAWYERLRDFLLSKDFKIGKVDTTLFTKIIGDDFFVCQ 808
Query: 1265 IYVDDIIFGSANPSLCKEFSKLMQAEFEMSMMGELKYFLGIQIDQRPGVTYIHQKKYTLE 1324
IYVDDIIFGS N CKEF +M EFEMSM+ EL +FLG+QI Q T++ Q KY +
Sbjct: 809 IYVDDIIFGSTNEVFCKEFGDMMSREFEMSMIEELSFFLGLQIKQLKDGTFVSQTKYIKD 868
Query: 1325 LLKKFNMSDCNISKTPMHPTCILEKEEVSSKVCQKLYRGMIGSLLYLTASRPDILFSVHL 1384
LLK+F + D KTPM L+ +E V KLYR MIGSLLYLTASRPDI+FSV +
Sbjct: 869 LLKRFGLEDAKPIKTPMATNWHLDLDEGGKPVDLKLYRSMIGSLLYLTASRPDIMFSVCM 928
Query: 1385 CARFQSDPRETHLTAVKRILKYLKGTTNLGLMYRKTSEYTLSGFCDADFAGDRVERKSTS 1444
ARFQ+ P+E HL AVKRIL+YLK ++ + L Y K +++ L G+ D+D+AG +V+RKSTS
Sbjct: 929 YARFQAAPKECHLVAVKRILRYLKHSSTISLWYPKGAKFKLVGYSDSDYAGYKVDRKSTS 988
Query: 1445 GSCHFLGSNLVTWSSKRQNTIALSTAEAEYVSAATCCTQTIWMKNHLEDYGLSL--KKVP 1502
GSC LG +LV+WSSK+QN++ALSTAEAEY+SA +CC Q +WMK L DYG+S + P
Sbjct: 989 GSCQMLGRSLVSWSSKKQNSVALSTAEAEYISAGSCCAQLLWMKQILLDYGISFTETQTP 1048
Query: 1503 IYCDNTAAISLSKNPILHSRAKHIEVKYHYIRDHVQKGTLSLEYVDT 1549
+ C+N + I ++ NP+ H R KHI++++H++ DHV K + + ++ T
Sbjct: 1049 LLCNNDSTIKIANNPVQHFRTKHIDIRHHFLTDHVAKCDIVISHIRT 1095
>gb|AAP94592.1| retrotransposon Opie-2 [Zea mays]
Length = 1512
Score = 761 bits (1966), Expect = 0.0
Identities = 393/801 (49%), Positives = 528/801 (65%), Gaps = 58/801 (7%)
Query: 749 PLELLHIDLFGPVKTESIGGKKYELVIVDDYSRWTWVKFLRHKDETHTMFTNFITQVQKE 808
PLELLH+DLFGPV SIGG KY LVIVDD+SR+TWV FL+ K ET F+ + Q E
Sbjct: 737 PLELLHMDLFGPVAYLSIGGSKYGLVIVDDFSRFTWVFFLQDKSETQGTLKRFLRRAQNE 796
Query: 809 FQSSVITVRSDHGGEFENKAFEDLFNSQGISHNFSCPRTPQQNGVVERKNITLQEMARTM 868
F+ V +RSD+G EF+N E+ +GI H FS P TPQQNGVVERKN TL +MARTM
Sbjct: 797 FELKVKKIRSDNGSEFKNLQVEEFLEEEGIKHEFSAPYTPQQNGVVERKNRTLIDMARTM 856
Query: 869 MQESSMAKHFWAEAINTACYIQNRISIRPILEKTPYELCKGRQPDISYFHPFGSTCFMLN 928
+ E + FW+EA+NTAC+ NR+ + +L+KT YEL G +P++SYF FGS C++L
Sbjct: 857 LGEFKTPECFWSEAVNTACHAINRVYLHRLLKKTSYELLTGNKPNVSYFRVFGSKCYILV 916
Query: 929 TKEQLGKFDSKALKCYFLGYSERSKGFRIYNIIHQTVEESIQIRFDDKLGSEKSKLFERF 988
K + KF KA++ + LGY +K +R++N VE S + FD+ GS + ++
Sbjct: 917 KKGRNSKFAPKAVEGFLLGYDSNTKAYRVFNKSSGLVEVSSDVVFDETNGSPREQV---- 972
Query: 989 ADLSIDCSEANQPIKSPEDVAPEAEASEDFPTTSDPLQKKKRIVASHPEELIIGNKDAPV 1048
+DC + ++ ED PT + + I P+E +D P
Sbjct: 973 ----VDCDDVDE---------------EDVPTAAI---RTMAIGEVRPQEQ--DERDQPS 1008
Query: 1049 RTRSMLKPSEETLLSLKGFVSLIEPKSVDEALEDKGWIQAMQEELDQFTKNDVWTLMPKP 1108
+ ++ P+++ +P V+EAL D W+ AMQEEL+ F +N+VW+L
Sbjct: 1009 SSTTVHPPTQDDE----------QPFRVEEALLDLDWVLAMQEELNNFKRNEVWSL---- 1054
Query: 1109 KGFHVIGTKWVFRNKLNEKGEVTRNKARLVAQGYSQQEGIDYTETFAPVARLEAIRLLIS 1168
+E G VTRNKARLVA+GY+Q G+D+ ETFAPVARLE+IR+L++
Sbjct: 1055 ----------------DEHGVVTRNKARLVAKGYAQVAGLDFEETFAPVARLESIRILLA 1098
Query: 1169 FSVNHNIILHQMDVKSAFLNGYISEEVYVKQPPGFEDNKHPEHVYKLKKSLYGLKQAPRA 1228
++ +H+ L+QMDVKSAFLNG I EEVYV+QPPGFED ++P+HV KL K+LYGLKQAPRA
Sbjct: 1099 YAAHHSFRLYQMDVKSAFLNGPIKEEVYVEQPPGFEDERYPDHVCKLAKALYGLKQAPRA 1158
Query: 1229 WYERLSSFLLQNEFVRGKGDNTLFCRTYKNDILIVQIYVDDIIFGSANPSLCKEFSKLMQ 1288
WYE L FL+ N F GK D TLF +T D+ + QI+VDDIIFGS N C+EFS++M
Sbjct: 1159 WYECLRDFLIANAFKVGKADPTLFTKTCNGDLFVCQIFVDDIIFGSTNQKSCEEFSRVMT 1218
Query: 1289 AEFEMSMMGELKYFLGIQIDQRPGVTYIHQKKYTLELLKKFNMSDCNISKTPMHPTCILE 1348
+FEMSMMG+L YFLG Q+ Q T+I Q KYT +LLK+F M D +KTPM +
Sbjct: 1219 QKFEMSMMGKLNYFLGFQVKQLKDGTFISQMKYTQDLLKRFGMKDAKPAKTPMGTDGHTD 1278
Query: 1349 KEEVSSKVCQKLYRGMIGSLLYLTASRPDILFSVHLCARFQSDPRETHLTAVKRILKYLK 1408
+ V QK YR MIGSLLYL ASRPDI+ SV +CARFQS+P+E HL AVKRIL+YL
Sbjct: 1279 LNKGGKSVDQKAYRSMIGSLLYLCASRPDIMLSVCMCARFQSEPKECHLVAVKRILRYLV 1338
Query: 1409 GTTNLGLMYRKTSEYTLSGFCDADFAGDRVERKSTSGSCHFLGSNLVTWSSKRQNTIALS 1468
T GL Y K S + L G+ D+D AG +V+RKSTSG+C FLG +LV+W+SK+Q ++ALS
Sbjct: 1339 ATPCFGLWYPKGSTFDLVGYSDSDNAGCKVDRKSTSGTCQFLGRSLVSWNSKKQTSVALS 1398
Query: 1469 TAEAEYVSAATCCTQTIWMKNHLEDYGLSLKKVPIYCDNTAAISLSKNPILHSRAKHIEV 1528
TAEAEYV+A CC Q +WM+ L D+G +L KVP+ CDN +AI +++NP+ H+R KHI++
Sbjct: 1399 TAEAEYVAAGQCCAQLLWMRQTLRDFGYNLSKVPLLCDNESAIRMAENPVEHNRTKHIDI 1458
Query: 1529 KYHYIRDHVQKGTLSLEYVDT 1549
++H++RDH QKG + + +V T
Sbjct: 1459 RHHFLRDHQQKGDIEVFHVST 1479
Score = 38.9 bits (89), Expect = 1.4
Identities = 17/42 (40%), Positives = 24/42 (56%), Gaps = 1/42 (2%)
Query: 557 SWYLDSGCSRHMTGTRSIFQKLTPLKSGGD-VGFGGNQKGKI 597
SW +DSGC+ HMTG + +F K D + FG +GK+
Sbjct: 671 SWIIDSGCTNHMTGEKKMFTSYVKNKDSQDSIIFGDGNQGKL 712
>gb|AAD50001.1| Hypothetical protein [Arabidopsis thaliana] gi|25301681|pir||F86246
hypothetical protein [imported] - Arabidopsis thaliana
Length = 1352
Score = 736 bits (1901), Expect = 0.0
Identities = 409/1039 (39%), Positives = 585/1039 (55%), Gaps = 47/1039 (4%)
Query: 532 DPRYGYLKQKL----FLLQTSYAA--QLRHLSWYLDSGCSRHMTGTRSIFQKLTPLKSGG 585
+ + Y+++K+ LL SY Q + WYLDSG S HM G +S+F +L G
Sbjct: 303 EEKANYVEEKIQEEDMLLMASYKKDEQKENHKWYLDSGASNHMCGRKSMFAELDE-SVRG 361
Query: 586 DVGFGGNQKGKIIGKGSI----GDGKTPVINDVLLVEGLFHNLLSISQIADKGYDVIFNQ 641
+V G K ++ GKG+I +G I++V + + N+LS+ Q+ +KGYD+
Sbjct: 362 NVALGDESKMEVKGKGNILIRLKNGDHQFISNVYYIPSMKTNILSLGQLLEKGYDIRLKD 421
Query: 642 TGCKAVSQTDGSVLFSGKRKNDIYKIRSSELLSQKVKCLMSVNDEQWIWHRRLGHASLRK 701
Q + KN ++ + ++Q +K M +E W+WH R GH +
Sbjct: 422 NNLSIRDQESNLITKVPMSKNRMFVLNIRNDIAQCLK--MCYKEESWLWHLRFGHLNFGG 479
Query: 702 ISQLSKLNLVRGLPHLKYSSEALCEACQKGKFTKKPFKAKNVVSTTRPLELLHIDLFGPV 761
+ LS+ +VRGLP + + ++ +CE C GK K F ++ +PLEL+H D+ GP+
Sbjct: 480 LELLSRKEMVRGLPCINHPNQ-VCEGCLLGKQFKMSFPKESSSRAQKPLELIHTDVCGPI 538
Query: 762 KTESIGGKKYELVIVDDYSRWTWVKFLRHKDETHTMFTNFITQVQKEFQSSVITVRSDHG 821
K +S+G Y L+ +DD+SR TWV FL+ K E +F F V+KE + T+RSD G
Sbjct: 539 KPKSLGKSNYFLLFIDDFSRKTWVYFLKEKSEVFEIFKKFKAHVEKESGLVIKTMRSDRG 598
Query: 822 GEFENKAFEDLFNSQGISHNFSCPRTPQQNGVVERKNITLQEMARTMMQESSMAKHFWAE 881
GEF +K F GI + PR+PQQNGVVERKN T+ EMAR+M++ + K WAE
Sbjct: 599 GEFTSKEFLKYCEDNGIRRQLTVPRSPQQNGVVERKNRTILEMARSMLKSKRLPKELWAE 658
Query: 882 AINTACYIQNRISIRPILEKTPYELCKGRQPDISYFHPFGSTCFMLNTKEQLGKFDSKAL 941
A+ A Y+ NR + + KTP E GR+P +S+ FGS E+ K D K+
Sbjct: 659 AVACAVYLLNRSPTKSVSGKTPQEAWSGRKPGVSHLRVFGSIAHAHVPDEKRSKLDDKSE 718
Query: 942 KCYFLGYSERSKGFRIYN------IIHQTVEESIQIRFDDKLGSEKSKLFERFADLSIDC 995
K F+GY SKG+++YN II + + + +D E F F +
Sbjct: 719 KYIFIGYDNNSKGYKLYNPDTKKTIISRNIVFDEEGEWDWNSNEEDYNFFPHFEE----- 773
Query: 996 SEANQPIKSPEDVAPEAEASEDFPTTSDPLQKKKRIVASHPEELIIGNKDAPVRTRSMLK 1055
E E + + P + +P +S EE + + R RS+ +
Sbjct: 774 --------------DEPEPTREEPPSEEPTTPPTSPTSSQIEE---SSSERTPRFRSIQE 816
Query: 1056 PSEETL----LSLKGFVSLIEPKSVDEALEDKGWIQAMQEELDQFTKNDVWTLMPKPKGF 1111
E T L+L + EP +A+E K W AM EE+ KND W L P G
Sbjct: 817 LYEVTENQENLTLFCLFAECEPMDFQKAIEKKTWRNAMDEEIKSIQKNDTWELTSLPNGH 876
Query: 1112 HVIGTKWVFRNKLNEKGEVTRNKARLVAQGYSQQEGIDYTETFAPVARLEAIRLLISFSV 1171
IG KWV++ K N KGEV R KARLVA+GYSQ+ GIDY E FAPVARLE +RL+IS +
Sbjct: 877 KAIGVKWVYKAKKNSKGEVERYKARLVAKGYSQRVGIDYDEVFAPVARLETVRLIISLAA 936
Query: 1172 NHNIILHQMDVKSAFLNGYISEEVYVKQPPGFEDNKHPEHVYKLKKSLYGLKQAPRAWYE 1231
+ +HQMDVKSAFLNG + EEVY++QP G+ + V +LKK LYGLKQAPRAW
Sbjct: 937 QNKWKIHQMDVKSAFLNGDLEEEVYIEQPQGYIVKGEEDKVLRLKKVLYGLKQAPRAWNT 996
Query: 1232 RLSSFLLQNEFVRGKGDNTLFCRTYKNDILIVQIYVDDIIFGSANPSLCKEFSKLMQAEF 1291
R+ + + +F++ ++ L+ + K DILI +YVDD+IF NPS+ +EF K M EF
Sbjct: 997 RIDKYFKEKDFIKCPYEHALYIKIQKEDILIACLYVDDLIFTGNNPSIFEEFKKEMTKEF 1056
Query: 1292 EMSMMGELKYFLGIQIDQRPGVTYIHQKKYTLELLKKFNMSDCNISKTPMHPTCILEKEE 1351
EM+ +G + Y+LGI++ Q +I Q+ Y E+LKKF M D N TPM L K+E
Sbjct: 1057 EMTDIGLMSYYLGIEVKQEDNGIFITQEGYAKEVLKKFKMDDSNPVCTPMECGIKLSKKE 1116
Query: 1352 VSSKVCQKLYRGMIGSLLYLTASRPDILFSVHLCARFQSDPRETHLTAVKRILKYLKGTT 1411
V ++ ++GSL YLT +RPDIL++V + +R+ P TH A KRIL+Y+KGT
Sbjct: 1117 EGEGVDPTTFKSLVGSLRYLTCTRPDILYAVGVVSRYMEHPTTTHFKAAKRILRYIKGTV 1176
Query: 1412 NLGLMYRKTSEYTLSGFCDADFAGDRVERKSTSGSCHFLGSNLVTWSSKRQNTIALSTAE 1471
N GL Y TS+Y L G+ D+D+ GD +RKSTSG ++G TW SK+Q + LST E
Sbjct: 1177 NFGLHYSTTSDYKLVGYSDSDWGGDVDDRKSTSGFVFYIGDTAFTWMSKKQPIVTLSTCE 1236
Query: 1472 AEYVSAATCCTQTIWMKNHLEDYGLSLKK-VPIYCDNTAAISLSKNPILHSRAKHIEVKY 1530
AEYV+A +C IW++N L++ L ++ I+ DN +AI+L+KNP+ H R+KHI+ +Y
Sbjct: 1237 AEYVAATSCVCHAIWLRNLLKELSLPQEEPTKIFVDNKSAIALAKNPVFHDRSKHIDTRY 1296
Query: 1531 HYIRDHVQKGTLSLEYVDT 1549
HYIR+ V K + LEYV T
Sbjct: 1297 HYIRECVSKKDVQLEYVKT 1315
Database: nr
Posted date: Jul 5, 2005 12:34 AM
Number of letters in database: 863,360,394
Number of sequences in database: 2,540,612
Lambda K H
0.330 0.140 0.425
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,360,986,677
Number of Sequences: 2540612
Number of extensions: 95392045
Number of successful extensions: 287832
Number of sequences better than 10.0: 3831
Number of HSP's better than 10.0 without gapping: 2008
Number of HSP's successfully gapped in prelim test: 1823
Number of HSP's that attempted gapping in prelim test: 278695
Number of HSP's gapped (non-prelim): 6374
length of query: 1549
length of database: 863,360,394
effective HSP length: 141
effective length of query: 1408
effective length of database: 505,134,102
effective search space: 711228815616
effective search space used: 711228815616
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.9 bits)
S2: 82 (36.2 bits)
Lotus: description of TM0240.16