BLASTP 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= TM0239.1
         (285 letters)

Database: nr 
           2,540,612 sequences; 863,360,394 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

emb|CAC50257.1| AorR protein [Eubacterium acidaminophilum]             36  1.1

>emb|CAC50257.1| AorR protein [Eubacterium acidaminophilum]
          Length = 518

 Score = 36.2 bits (82), Expect = 1.1
 Identities = 25/81 (30%), Positives = 41/81 (49%), Gaps = 2/81 (2%)

Query: 123 LRLTGLTEGLSPETQRKVVPSSFRGKEFNGLSVSPKSRRFAQKVQPMVEVHSVFPLVVGV 182
           + LTG TEG+ P T   VV ++F  +     S S K R+  +++     V++ F  ++G 
Sbjct: 155 INLTGYTEGVHPHTLGMVVAAAFSIEHIITESTSRKRRKMHERISECRAVYN-FEKIIGE 213

Query: 183 DRKKLPKAA-AAAVGGDETTI 202
           D K L     A  + G ++TI
Sbjct: 214 DPKFLDTIEYAKKISGSKSTI 234


  Database: nr
    Posted date:  Jul 5, 2005 12:34 AM
  Number of letters in database: 863,360,394
  Number of sequences in database:  2,540,612
  
Lambda     K      H
   0.322    0.137    0.414 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 474,715,249
Number of Sequences: 2540612
Number of extensions: 19326046
Number of successful extensions: 35045
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 35045
Number of HSP's gapped (non-prelim): 1
length of query: 285
length of database: 863,360,394
effective HSP length: 126
effective length of query: 159
effective length of database: 543,243,282
effective search space: 86375681838
effective search space used: 86375681838
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 74 (33.1 bits)