BLAST2 result
BLASTP 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TM0234.6
(1379 letters)
Database: nr
2,540,612 sequences; 863,360,394 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_916434.1| putative gag/pol polyprotein [Oryza sativa (jap... 1046 0.0
gb|AAT93988.1| putative polyprotein [Oryza sativa (japonica cult... 1046 0.0
gb|AAP51971.1| putative copia-type polyprotein [Oryza sativa (ja... 1026 0.0
gb|AAV24907.1| hypothetical protein [Oryza sativa (japonica cult... 1020 0.0
ref|XP_462785.1| putative gag/pol polyprotein [Oryza sativa (jap... 996 0.0
gb|AAP54850.1| putative gag-pol polyprotein [Oryza sativa (japon... 985 0.0
emb|CAE05956.3| OSJNBb0088C09.15 [Oryza sativa (japonica cultiva... 821 0.0
gb|AAD21687.1| Strong similarity to gi|3600044 T12H20.12 proteas... 772 0.0
emb|CAC37623.1| copia-like polyprotein [Arabidopsis thaliana] 771 0.0
emb|CAB81170.1| retrotransposon like protein [Arabidopsis thalia... 751 0.0
gb|AAD43604.1| T3P18.3 [Arabidopsis thaliana] gi|25301688|pir||H... 719 0.0
gb|AAP53905.1| putative pol polyprotein [Oryza sativa (japonica ... 687 0.0
emb|CAC95126.1| gag-pol polyprotein [Populus deltoides] 645 0.0
emb|CAE04646.2| OSJNBa0061G20.2 [Oryza sativa (japonica cultivar... 642 0.0
gb|AAT40550.1| putative receptor kinase [Solanum demissum] 617 e-174
gb|AAB61111.1| Strong similarity to Zea mays retrotransposon Hop... 614 e-174
gb|AAP46257.1| putative polyprotein [Oryza sativa (japonica cult... 613 e-173
gb|AAU89728.1| putative retroelement pol polyprotein-like [Solan... 610 e-173
gb|AAT38758.1| putative gag-pol polyprotein [Solanum demissum] 599 e-169
emb|CAB10526.1| retrotransposon like protein [Arabidopsis thalia... 596 e-168
>ref|NP_916434.1| putative gag/pol polyprotein [Oryza sativa (japonica cultivar-group)]
Length = 1090
Score = 1046 bits (2704), Expect = 0.0
Identities = 548/1014 (54%), Positives = 684/1014 (67%), Gaps = 57/1014 (5%)
Query: 418 VKNLISVRQLTTDNNVSVCFDPYGFSVIDFQTGIPLMRCNSPGDLYPV---TPSFPFAGL 474
V+NL+SVRQ T DN S+ FD +GFSV D QT ++RCNS G+LY + TPS GL
Sbjct: 58 VRNLLSVRQFTRDNKCSIEFDEFGFSVKDLQTRRVILRCNSRGELYTLPAATPSSAAHGL 117
Query: 475 ---AQSLWHSRLGHPSSSALQSLRSNKFISYEHLNSSPVCESCVFGKHVRLPFVSSNNVT 531
+ +LWH RLGHP +A+ LR+ IS +++S +C +C GKH RLPF +S++ T
Sbjct: 118 LATSSTLWHCRLGHPGPAAIHGLRNIASISCNKIDTS-LCHACQLGKHTRLPFHNSSSRT 176
Query: 532 VMPFDILHSDLWTSPVLSSAGHRFYVLFLDDFTDFLWTFPLSNKSQVFEMFISLSNQIRT 591
+PF+++H D+WTSPV+S++G ++Y++ LDDF+ F WTF L KS V + + T
Sbjct: 177 SVPFELVHCDVWTSPVMSTSGFKYYLVVLDDFSHFCWTFLLRLKSDVHRHIVEFVEYVST 236
Query: 592 HFSQTIKCLQCDNGREFDNKSFHDYCAANGLIFRFSCPHTSSQNGKAERKIRTINNMIRT 651
F +K Q DNGREF N + + A+ G R SCP+TS QNGKAER +RTINN IRT
Sbjct: 237 QFGLPLKSFQADNGREFVNTAITTFLASRGTQLRLSCPYTSPQNGKAERMLRTINNSIRT 296
Query: 652 LLAHASVPPSFWHHALQMATYLLNIIPRKNLSNLSPTQLLYRRDPSYTHLRVFGCLCYPL 711
LL AS+PPS+W AL ATYLLN P ++ P QLL+R P ++HLRVFGCLCYP
Sbjct: 297 LLIQASMPPSYWAEALATATYLLNRRPSSSIHQSLPFQLLHRTIPDFSHLRVFGCLCYPN 356
Query: 712 VPSSTINKLQPRSTPCVFLGYPLHHRGYKCFDLSHRKVIISRHVIFDETQFPFANLTPTP 771
+ ++T +KL PRST CVFLGYP H+GY+C DLS ++IISRHV+FDE+QFPFA TP
Sbjct: 357 LSATTPHKLSPRSTACVFLGYPTSHKGYRCLDLSTHRIIISRHVVFDESQFPFA-ATPPA 415
Query: 772 SSTYEWLSDDIHPSVIH-------RWTTQTPSPDLQ----------------------PT 802
+S++++L + P+ R T PS +++ P+
Sbjct: 416 ASSFDFLLQGLSPADAPSLEVEQPRPLTVAPSTEVEQPYLPLPSRRLSAGTVTVASEAPS 475
Query: 803 PVAP-----SATATPPTSTASSSSPSDP-------------SPSSSTPQSPPQPAPPVRT 844
AP SA ATPP S +S+ P PSSST + AP +
Sbjct: 476 AGAPLVGTSSADATPPGSATRASTIVSPFRHVYTRRPVTTVPPSSSTAVTNAVAAPQPHS 535
Query: 845 MATRSMRGIYKPRKLFNLSVTIDDPTISPLPKNPKLALSDPNWKSAMQSEFDALIRNNTW 904
M TRS G +P + L+ T SP+P N AL+DPNW++AM E+ L+ N TW
Sbjct: 536 MVTRSQSGSLRP--VDRLTYTATQAAASPVPANYHSALADPNWRAAMADEYKELVDNGTW 593
Query: 905 DLVPRPCDVNIIRCMWIFRHKTKANGCFERYKARLVGDGRSQIAGVDCDETFSHVVKPAT 964
LV RP NI WIF+HK ++G RYKAR V G SQ G+D DETFS VVK AT
Sbjct: 594 RLVSRPPRANIATGKWIFKHKFHSDGSLARYKARWVVRGYSQQHGIDYDETFSPVVKLAT 653
Query: 965 IRTVLTIALSRSWPIHQLDVQNAFLHGDLHETVYMHQPLGFRDPNHPDYVCRLRKSLYGL 1024
IR VL+IA SR+WPIHQLDV+NAFLHG L ETVY QP GF DP PD VC L+KSLYGL
Sbjct: 654 IRVVLSIAASRAWPIHQLDVKNAFLHGHLKETVYCQQPSGFVDPTAPDAVCLLQKSLYGL 713
Query: 1025 KQAPRAWYQCFADYVSTIGFQHSTSDHSLFIYRRGSDMAYLLLYVDDIILISSSHDLRKS 1084
KQAPRAWYQ FA Y+ +GF S SD SLF+Y+ G +AYLLLYVDDIIL +S+ L +
Sbjct: 714 KQAPRAWYQRFATYIRQMGFMPSASDTSLFVYKDGDRIAYLLLYVDDIILTASTTTLLQQ 773
Query: 1085 IMALLASEFAMKDLGPLSYFLGIAVTRHAGGLFLSQSTYARDIIARAGMASCHPSATPVD 1144
+ A L SEFAM DLG L +FLGI+V R GLFLSQ YA D++ RAGMA CH ++TPVD
Sbjct: 774 LTARLHSEFAMTDLGDLHFFLGISVKRSPDGLFLSQRQYAVDLLQRAGMAECHSTSTPVD 833
Query: 1145 TKQKLSTSAGTPCDDPTLYRSLVGALQYLTFTRPDISYAVQQVCLHMHAPRTEHMLALKR 1204
T KLS + G P DP+ YRS+ GALQYLT TRPD++YAVQQVCL MH PR H+ +KR
Sbjct: 834 THAKLSATDGLPVADPSAYRSIAGALQYLTLTRPDLAYAVQQVCLFMHDPREPHLALVKR 893
Query: 1205 ILRYVQGTLQLGLHLYPSPIEKLISYTDADWGGCLDTRRSTSGYCVFLGDNLISWSSKRQ 1264
ILRYV+G+L +GLH+ PI+ L +Y+DADW GC ++RRSTSGYCV+LGDNL+SWSSKRQ
Sbjct: 894 ILRYVKGSLSIGLHIGSGPIQSLTAYSDADWAGCPNSRRSTSGYCVYLGDNLVSWSSKRQ 953
Query: 1265 PTLSRSSAEAEYRGVANVVSESCWLRNLLLELHFPLS*ATLVYCDNVSAIYLSGNPVQHQ 1324
T+SRSSAEAEYR VA+ V+E CWLR LL ELH P++ AT+VYCDNVSA+Y++ NPV H+
Sbjct: 954 TTVSRSSAEAEYRAVAHAVAECCWLRQLLQELHVPIASATIVYCDNVSAVYMTANPVHHR 1013
Query: 1325 RTKHIEMDIHFVREKVARGQARVLHVPSRHQIADIFTKGLPRVLFDDFRSSLSV 1378
RTKHIE+DIHFVREKVA GQ RVL+VPS HQ ADI TKGLP LF DFRSSL V
Sbjct: 1014 RTKHIEIDIHFVREKVALGQVRVLYVPSSHQFADIMTKGLPVQLFTDFRSSLCV 1067
>gb|AAT93988.1| putative polyprotein [Oryza sativa (japonica cultivar-group)]
Length = 1480
Score = 1046 bits (2704), Expect = 0.0
Identities = 553/1088 (50%), Positives = 709/1088 (64%), Gaps = 96/1088 (8%)
Query: 381 VGSGQGIPIQGSGHTTLLTSYKTKPLSLSHVLHTPQIVKNLISVRQLTTDNNVSVCFDPY 440
VG+G IP+ G T T +L ++L P +V+NL+ VRQ T DN S FD +
Sbjct: 388 VGNGHTIPVICRG--TSFLPIGTTRFALKNILVAPSLVRNLLFVRQFTRDNKCSFEFDEF 445
Query: 441 GFSVIDFQTGIPLMRCNSPGDLYPVTPSFP------FAGLAQSLWHSRLGHPSSSALQSL 494
GFSV D T ++RCNS GDLY + + P F + +LWH RLGHPS +A+Q+L
Sbjct: 446 GFSVKDLPTRRVILRCNSRGDLYTLPTTVPAITAHSFLAKSSTLWHHRLGHPSPAAVQTL 505
Query: 495 RSNKFISYEHLNSSPVCESCVFGKHVRLPFVSSNNVTVMPFDILHSDLWTSPVLSSAGHR 554
+S N+ +C +C GKH RL F S++ T PF+++H D+WTSPVLS +G +
Sbjct: 506 HKLAILSCTRSNNK-LCHACHLGKHTRLSFSKSSSSTSSPFELVHCDVWTSPVLSLSGFK 564
Query: 555 FYVLFLDDFTDFLWTFPLSNKSQVFEMFISLSNQIRTHFSQTIKCLQCDNGREFDNKSFH 614
+Y++ LDDFT F WTFPL +KS V + + ++T FS I+C Q DNG +F N +
Sbjct: 565 YYLVVLDDFTHFCWTFPLRHKSDVHQHLLEFVAYVKTQFSLPIRCFQADNGTKFVNHATT 624
Query: 615 DYCAANGLIFRFSCPHTSSQNGKAERKIRTINNMIRTLLAHASVPPSFWHHALQMATYLL 674
+ A+ G++ R SCP+TS QNGKAER +RTIN IRTLL AS+PPS+W AL ATYLL
Sbjct: 625 SFFASRGIVLRLSCPYTSPQNGKAERVLRTINKSIRTLLIQASMPPSYWAEALATATYLL 684
Query: 675 NIIPRKNLSNLSPTQLLYRRDPSYTHLRVFGCLCYPLVPSSTINKLQPRSTPCVFLGYPL 734
N P ++ N P QLL+ + P Y++L+VFGCLCYP + + T +KL PRS P VFLGY
Sbjct: 685 NRRPSTSVRNSIPYQLLHNKLPDYSNLQVFGCLCYPNLSAMTSHKLSPRSAPYVFLGYSA 744
Query: 735 HHRGYKCFDLSHRKVIISRHVIFDETQFPFANLTPTPSSTYEWLSDDIHPSVIH------ 788
H+G++C D+S R++ ISRHV+FDE FPFA + P +S++++L +V
Sbjct: 745 SHKGFRCLDISTRRLYISRHVVFDEKTFPFAAI-PQDASSFDFLLQGFSIAVAPSSEVER 803
Query: 789 -RWTTQTPSPDL-QPTP---------------VAPSATATPPT----------------- 814
R+++ TPSP++ QP P + SA P
Sbjct: 804 PRFSSMTPSPEVEQPIPDDDTSGTELFQLLPGLRSSAAGRPLAGSPVDARLPGGCANDAA 863
Query: 815 --STASSSSPSDPSPSSSTPQSPP--------------------QPAP-----PVR---- 843
S++S+ SP P++S + P QPAP P+R
Sbjct: 864 NGSSSSNLSPVMDPPAASVVRPAPSEGPTTSLISPYRHTYLRRSQPAPTAIHRPIRASRA 923
Query: 844 -------------TMATRSMRGIYKPRKLFNLSVTIDDPTISPLPKNPKLALSDPNWKSA 890
TM TRS G +P + F + T D +SP+P N + AL+DPNW++A
Sbjct: 924 FHSATDQQQQTGHTMVTRSQTGHLRPIQRFTYTATHD--VVSPVPSNYRSALADPNWRAA 981
Query: 891 MQSEFDALIRNNTWDLVPRPCDVNIIRCMWIFRHKTKANGCFERYKARLVGDGRSQIAGV 950
+E+ AL+ NNTW LVPRP N++ WIF+HK ++G R+KAR V G SQ G+
Sbjct: 982 TANEYKALVDNNTWRLVPRPPGANVVTGKWIFKHKFHSDGTLARHKARWVVRGYSQQHGI 1041
Query: 951 DCDETFSHVVKPATIRTVLTIALSRSWPIHQLDVQNAFLHGDLHETVYMHQPLGFRDPNH 1010
D DETFS VVKPATI VL+IA SRSWPIHQLDV+NAFLHG+L ETVY QP GF DP+
Sbjct: 1042 DYDETFSPVVKPATIHVVLSIAASRSWPIHQLDVKNAFLHGNLEETVYYQQPSGFVDPSA 1101
Query: 1011 PDYVCRLRKSLYGLKQAPRAWYQCFADYVSTIGFQHSTSDHSLFIYRRGSDMAYLLLYVD 1070
P+ VC L+KSLYGLKQAPRAWYQ FA Y+ +GF S S+ SLF+Y+ G ++AYLLLYVD
Sbjct: 1102 PNAVCLLQKSLYGLKQAPRAWYQRFATYIRQLGFTSSASNTSLFVYKDGDNIAYLLLYVD 1161
Query: 1071 DIILISSSHDLRKSIMALLASEFAMKDLGPLSYFLGIAVTRHAGGLFLSQSTYARDIIAR 1130
DIIL +SS L I A L SEFAM DLG L +FLGI+VTR + GLFLSQ Y D++ R
Sbjct: 1162 DIILTASSATLLHHITARLHSEFAMTDLGDLHFFLGISVTRSSDGLFLSQRQYVVDLLKR 1221
Query: 1131 AGMASCHPSATPVDTKQKLSTSAGTPCDDPTLYRSLVGALQYLTFTRPDISYAVQQVCLH 1190
AGM+ CH +ATPVD + KLS + G P DPT YRSLVGALQYLT TRP+++YAVQQVCL
Sbjct: 1222 AGMSECHSTATPVDARSKLSATDGAPVSDPTEYRSLVGALQYLTLTRPELAYAVQQVCLF 1281
Query: 1191 MHAPRTEHMLALKRILRYVQGTLQLGLHLYPSPIEKLISYTDADWGGCLDTRRSTSGYCV 1250
MH PR H+ +KRILRY++GTL +GLHL +P++ L +Y+DADW GC D+ RSTSGYCV
Sbjct: 1282 MHDPREPHLALIKRILRYIKGTLHIGLHLGTTPVDSLTAYSDADWAGCPDSHRSTSGYCV 1341
Query: 1251 FLGDNLISWSSKRQPTLSRSSAEAEYRGVANVVSESCWLRNLLLELHFPLS*ATLVYCDN 1310
FLGDNL+SWSSKRQ T+SRSSAEAEYR VA+ ++E CWLR LL ELH L+ AT+VYCDN
Sbjct: 1342 FLGDNLVSWSSKRQTTVSRSSAEAEYRAVAHAIAECCWLRQLLSELHISLTSATVVYCDN 1401
Query: 1311 VSAIYLSGNPVQHQRTKHIEMDIHFVREKVARGQARVLHVPSRHQIADIFTKGLPRVLFD 1370
VSA+Y++ NPV H+RTKHIE+DIHFVREKVA GQ RVLH+PS HQ ADI TKGLP LF
Sbjct: 1402 VSAVYMAANPVHHRRTKHIEIDIHFVREKVALGQVRVLHLPSSHQFADIMTKGLPVQLFT 1461
Query: 1371 DFRSSLSV 1378
+FRSSL V
Sbjct: 1462 EFRSSLCV 1469
>gb|AAP51971.1| putative copia-type polyprotein [Oryza sativa (japonica
cultivar-group)] gi|37530764|ref|NP_919684.1| putative
copia-type polyprotein [Oryza sativa (japonica
cultivar-group)] gi|20042923|gb|AAM08751.1| Putative
copia-type polyprotein [Oryza sativa (japonica
cultivar-group)]
Length = 1803
Score = 1026 bits (2652), Expect = 0.0
Identities = 531/1017 (52%), Positives = 682/1017 (66%), Gaps = 36/1017 (3%)
Query: 381 VGSGQGIPIQGSGHTTLLTSYKTKPLSLSHVLHTPQIVKNLISVRQLTTDNNVSVCFDPY 440
VG+G +P+ + T + TS + L L +VL +P ++KNLISV++LT DNNVS+ FDP
Sbjct: 399 VGNGAKLPVTHTASTHIPTS--STDLHLHNVLVSPPLIKNLISVKKLTRDNNVSIEFDPT 456
Query: 441 GFSVIDFQTGIPLMRCNSPGDLYPVTPSFPFAGLAQSL-----WHSRLGHPSSSALQSLR 495
GFS+ D QT + +RC+SPGDLYP+ P A A S WH RLGHP S++L +
Sbjct: 457 GFSIKDLQTQVVKLRCDSPGDLYPLRLPSPHALSATSSPSVEHWHLRLGHPGSASLSKVL 516
Query: 496 SNKFISYEHLNSSPV-CESCVFGKHVRLPFVSSNNVTVMPFDILHSDLWTSPVLSSAGHR 554
+ ++ S+P C +C G +VRLPF SS++ T+ PF ++H+D+WTSP+ S++G++
Sbjct: 517 GS--FDFQCNKSAPHHCSACHVGTNVRLPFHSSSSQTLFPFQLVHTDVWTSPIYSNSGYK 574
Query: 555 FYVLFLDDFTDFLWTFPLSNKSQVFEMFISLSNQIRTHFSQTIKCLQCDNGREFDNKSFH 614
+YV+FLDDFT ++WTFP+ NKS+VF S T F + LQ DNG+E+D+ +
Sbjct: 575 YYVVFLDDFTHYIWTFPVRNKSEVFHTVRSFFAYAHTQFGLPVLALQTDNGKEYDSYALR 634
Query: 615 DYCAANGLIFRFSCPHTSSQNGKAERKIRTINNMIRTLLAHASVPPSFWHHALQMATYLL 674
+ +G + R SCP++S QNGKAER +RTIN+ +RT+L H++ P SFW ALQ A +L+
Sbjct: 635 SLLSLHGAVLRLSCPYSSQQNGKAERILRTINDCVRTMLVHSAAPLSFWAEALQTAMHLI 694
Query: 675 NIIPRKNLSNLSPTQLLYRRDPSYTHLRVFGCLCYPLVPSSTINKLQPRSTPCVFLGYPL 734
N P + +L P QLL P+Y HLRVFGCLCYP ++ +KL PRS CVF+GYP
Sbjct: 695 NRRPCRATGSLKPYQLLLGAPPTYDHLRVFGCLCYPNTIATAPHKLSPRSLACVFIGYPA 754
Query: 735 HHRGYKCFDLSHRKVIISRHVIFDETQFPFANL-TPTPSSTYEWLSDDIHPSVIHRWTTQ 793
HRGY+C+D+ R+V SRHV F E FPF + +P PS+ P H T
Sbjct: 755 DHRGYRCYDMVSRRVFTSRHVTFVEDVFPFRDAPSPRPSAP---------PPPDHGDDTI 805
Query: 794 TPSPDLQPTPVAPSATATPPTSTASSSSPSDPSPSSSTP------------QSPPQPAPP 841
P V P TA P AS SP+ +PSS+ P SP +PP
Sbjct: 806 VLLPAPAQHVVTPVGTA-PAHDAASPPSPASSTPSSAAPAHDVAPPPSPETSSPASASPP 864
Query: 842 VRTMATRSMRGIYKPRKLFNLSVTIDDPTISPLPKNPKLALSDPNWKSAMQSEFDALIRN 901
M TR+ GI KP + ++ T T+SP P + ++AL DPNW++AMQ+EFDAL+ N
Sbjct: 865 RHAMTTRARAGISKPNPRYAMTAT---STLSPTPSSVRVALRDPNWRAAMQAEFDALLAN 921
Query: 902 NTWDLVPRPCDVNIIRCMWIFRHKTKANGCFERYKARLVGDGRSQIAGVDCDETFSHVVK 961
TW LVPRP II W+F+ K A+G ++YKAR V G +Q GVD ETFS VVK
Sbjct: 922 RTWTLVPRPPGARIITGKWVFKTKLHADGSLDKYKARWVVRGFNQRPGVDFGETFSPVVK 981
Query: 962 PATIRTVLTIALSRSWPIHQLDVQNAFLHGDLHETVYMHQPLGFRDPNHPDYVCRLRKSL 1021
PATIRTVLT+ S+ WP HQLDV NAFLHG L E V QP GF D P VC L +SL
Sbjct: 982 PATIRTVLTLISSKQWPAHQLDVSNAFLHGHLQERVLCQQPTGFEDAARPADVCLLSRSL 1041
Query: 1022 YGLKQAPRAWYQCFADYVSTIGFQHSTSDHSLFIYRRGSDMAYLLLYVDDIILISSSHDL 1081
YGL+QAPRAW++ FAD+ +++GF S +D SLF+ RRGSD AYLLLYVDD+IL +SS L
Sbjct: 1042 YGLRQAPRAWFKRFADHATSLGFVQSRADPSLFVLRRGSDTAYLLLYVDDMILSASSSSL 1101
Query: 1082 RKSIMALLASEFAMKDLGPLSYFLGIAVTRHAGGLFLSQSTYARDIIARAGMASCHPSAT 1141
+ I+ L +EF +KD+GPL YFLGI V R A G LSQS YA D++ RAGMA+C AT
Sbjct: 1102 LQRIIDRLQAEFKVKDMGPLKYFLGIEVQRTADGFVLSQSKYATDVLERAGMANCKAVAT 1161
Query: 1142 PVDTKQKLSTSAGTPCDDPTLYRSLVGALQYLTFTRPDISYAVQQVCLHMHAPRTEHMLA 1201
P D K KLS+ G D + YRS+ GALQYLT TRPDI+YAVQQVCLHMHAPR H+
Sbjct: 1162 PADAKPKLSSDEGPLFQDSSWYRSIAGALQYLTLTRPDIAYAVQQVCLHMHAPREAHVTL 1221
Query: 1202 LKRILRYVQGTLQLGLHLYPSPIEKLISYTDADWGGCLDTRRSTSGYCVFLGDNLISWSS 1261
LKRILRY++GT GLHL S L +++DADW GC DTRRSTSG+C+FLGD+LISWSS
Sbjct: 1222 LKRILRYIKGTAAFGLHLRASTSPTLTAFSDADWAGCPDTRRSTSGFCIFLGDSLISWSS 1281
Query: 1262 KRQPTLSRSSAEAEYRGVANVVSESCWLRNLLLELHFPLS*ATLVYCDNVSAIYLSGNPV 1321
KRQ T+SRSSAEAEYRGVAN V+E WLR LL ELH + AT+ YCDN+S++Y+S NPV
Sbjct: 1282 KRQTTVSRSSAEAEYRGVANAVAECTWLRQLLGELHCRVPQATIAYCDNISSVYMSKNPV 1341
Query: 1322 QHQRTKHIEMDIHFVREKVARGQARVLHVPSRHQIADIFTKGLPRVLFDDFRSSLSV 1378
H+RTKHIE+DIHFVREKVA G+ RVL +PS HQ AD+FTKGLP +F++FR+SL V
Sbjct: 1342 HHKRTKHIELDIHFVREKVALGELRVLPIPSAHQFADVFTKGLPSSMFNEFRASLCV 1398
>gb|AAV24907.1| hypothetical protein [Oryza sativa (japonica cultivar-group)]
gi|51854440|gb|AAU10819.1| putative polyprotein [Oryza
sativa (japonica cultivar-group)]
Length = 1679
Score = 1020 bits (2637), Expect = 0.0
Identities = 550/1096 (50%), Positives = 687/1096 (62%), Gaps = 104/1096 (9%)
Query: 379 LYVGSGQGIPIQGSGHTTLLTSYKTKPLSLSHVLHTPQIVKNLISVRQLTTDNNVSVCFD 438
+ VG+G IP+ GH+ + + +L +L +P I+KNLISVR+ DN SV FD
Sbjct: 591 IVVGNGSTIPVTSIGHSKIC--HPNCSFTLRDILCSPAIIKNLISVRRFVIDNWCSVEFD 648
Query: 439 PYGFSVIDFQTGIPLMRCNSPGDLYPVTPSFP-----FAGLAQS----LWHSRLGHPSSS 489
P+GFSV D +T + R NS G LY + + P A LA S LWH RLGH
Sbjct: 649 PFGFSVKDLRTRTVIARFNSSGPLYSLHHALPPPPAATALLANSSTDLLWHRRLGHLGHD 708
Query: 490 ALQSLRSNKFISYEHLNSSPVCESCVFGKHVRLPFVSSNNVTVMPFDILHSDLWTSPVLS 549
AL L + + + + VC +C G+HVRLPF SS + F++ H DLWTSPV+S
Sbjct: 709 ALNRLAA--VVPMTRGDLTGVCHACQLGRHVRLPFASSTSRASTNFELFHCDLWTSPVVS 766
Query: 550 SAGHRFYVLFLDDFTDFLWTFPLSNKSQVFEMFISLSNQIRTHFSQTIKCLQCDNGREFD 609
++G ++Y++ LDD + ++WTFPL KS F ++T F+ I+ +QCDNGREFD
Sbjct: 767 ASGFKYYLVILDDCSHYVWTFPLRFKSDTFTTLSHFFAYVKTQFATNIRSIQCDNGREFD 826
Query: 610 NKSFHDYCAANGLIFRFSCPHTSSQNGKAERKIRTINNMIRTLLAHASVPPSFWHHALQM 669
N + + NG+ R SCPHTS QNGKAER +R++NN++R++L A +P SFW AL
Sbjct: 827 NSAARTFFLTNGVHLRMSCPHTSPQNGKAERILRSLNNIVRSMLFQAKLPGSFWVEALHT 886
Query: 670 ATYLLNIIPRKNLSNLSPTQLLYRRDPSYTHLRVFGCLCYPLVPSSTINKLQPRSTPCVF 729
AT+L+N P K L +P LY PSY+HLRVFGC CYP + ++T +KL PRST CVF
Sbjct: 887 ATHLINRHPTKTLDRHTPHFALYGTHPSYSHLRVFGCKCYPNLSATTPHKLAPRSTMCVF 946
Query: 730 LGYPLHHRGYKCFDLSHRKVIISRHVIFDETQFPFANLTPTPSST--YEWLSDDIHPSVI 787
LGYPL+H+GY+CFD +VIISRHV+FDE FPF LT S+ ++L D P+
Sbjct: 947 LGYPLYHKGYRCFDPLSNRVIISRHVVFDEHSFPFTELTNGVSNATDLDFLEDFTAPAQA 1006
Query: 788 HRWTTQTP------------------------------------SPDLQPTPVAPSATAT 811
T+ P SPD + P +P+
Sbjct: 1007 PIGATRRPAVAPTTQTASSPMVHGLERPPPCSPTRPVSTPGGPSSPDSRLGPPSPTPALI 1066
Query: 812 PPTSTASSSSPSDPSPSSST------------------------PQSPPQPAPPVR---- 843
P ST+ + P+PS+ST P PP P P R
Sbjct: 1067 GPASTSPGPPSAGPAPSASTCPASSTWETVARPPTPPGLPRLDGPHLPPAPHVPRRLRSV 1126
Query: 844 ---------------------TMATRSMRGIYKPRKLFNLSVTIDDPTISPLPKNPKLAL 882
M TR+ G +KP NL +S +PK + AL
Sbjct: 1127 RATGAPTPLSGLEISPVVNDHVMTTRAKSGHHKPVHRLNLHAA----PLSLVPKTYRAAL 1182
Query: 883 SDPNWKSAMQSEFDALIRNNTWDLVPRPCDVNIIRCMWIFRHKTKANGCFERYKARLVGD 942
+DP W++AM+ E++AL+ N TWDLVPRP VN++ WIF+HK A+G +RYKAR V
Sbjct: 1183 ADPLWRAAMEEEYNALLANRTWDLVPRPAGVNVVTGKWIFKHKFHADGSLDRYKARWVLR 1242
Query: 943 GRSQIAGVDCDETFSHVVKPATIRTVLTIALSRSWPIHQLDVQNAFLHGDLHETVYMHQP 1002
G +Q GVD DETFS VVKPAT+RTVL++A+SR WP+HQLDV+NAFLHG L ETVY QP
Sbjct: 1243 GFTQRPGVDFDETFSPVVKPATVRTVLSLAVSRDWPVHQLDVKNAFLHGTLQETVYCTQP 1302
Query: 1003 LGFRDPNHPDYVCRLRKSLYGLKQAPRAWYQCFADYVSTIGFQHSTSDHSLFIYRRGSDM 1062
GF D PD VC L KSLYGLKQAPRAWY F ++ +IGF + SD SLFI RG+D
Sbjct: 1303 PGFVDSAKPDMVCCLNKSLYGLKQAPRAWYSRFTTFLQSIGFVEAKSDTSLFILHRGNDT 1362
Query: 1063 AYLLLYVDDIILISSSHDLRKSIMALLASEFAMKDLGPLSYFLGIAVTRHAGGLFLSQST 1122
YLLLYVDDI+L +SS L ++ L EF+MKDLG L +FLG++VTR++ GL LSQ
Sbjct: 1363 VYLLLYVDDIVLTASSRTLLHWTISALQGEFSMKDLGALHHFLGVSVTRNSAGLVLSQRQ 1422
Query: 1123 YARDIIARAGMASCHPSATPVDTKQKLSTSAGTPCDDPTLYRSLVGALQYLTFTRPDISY 1182
Y DI+ RAGMA C P TPVDT KLS+S G P DPT +RSL GALQYLTFTRPDISY
Sbjct: 1423 YCIDILERAGMADCKPCNTPVDTTAKLSSSDGPPVADPTDFRSLAGALQYLTFTRPDISY 1482
Query: 1183 AVQQVCLHMHAPRTEHMLALKRILRYVQGTLQLGLHLYPSPIEKLISYTDADWGGCLDTR 1242
AVQQVCLHMH PR H+ ALKRIL Y++G++ LGLH+ S L Y+DADW GC DTR
Sbjct: 1483 AVQQVCLHMHDPREPHLAALKRILHYIRGSVDLGLHIQRSSACDLAVYSDADWAGCPDTR 1542
Query: 1243 RSTSGYCVFLGDNLISWSSKRQPTLSRSSAEAEYRGVANVVSESCWLRNLLLELHFPLS* 1302
RSTSGY VFLGDNL+SWSSKRQ T+SRSSAEAEYR VAN V+E WLR LL ELH P S
Sbjct: 1543 RSTSGYAVFLGDNLVSWSSKRQHTVSRSSAEAEYRAVANAVAEVTWLRQLLQELHSPPSR 1602
Query: 1303 ATLVYCDNVSAIYLSGNPVQHQRTKHIEMDIHFVREKVARGQARVLHVPSRHQIADIFTK 1362
ATLVYCDNVSA+YLS NPVQHQRTKH+E+D+HFVRE+VA G RVLHVP+ Q ADIFTK
Sbjct: 1603 ATLVYCDNVSAVYLSSNPVQHQRTKHVEIDLHFVRERVAVGAVRVLHVPTTSQYADIFTK 1662
Query: 1363 GLPRVLFDDFRSSLSV 1378
GLP +F +FRSSL+V
Sbjct: 1663 GLPTPVFTEFRSSLNV 1678
>ref|XP_462785.1| putative gag/pol polyprotein [Oryza sativa (japonica cultivar-group)]
Length = 1373
Score = 996 bits (2576), Expect = 0.0
Identities = 521/1024 (50%), Positives = 660/1024 (63%), Gaps = 91/1024 (8%)
Query: 441 GFSVIDFQTGIPLMRCNSPGDLYPVTP----SFPFAGLAQSLWHSRLGHPSSSALQSLRS 496
G + +D +T + RCNS GDLYP P + SLWH RLGH AL L
Sbjct: 350 GGAALDLETRNVIARCNSSGDLYPFYPPATSTHALLAAPTSLWHRRLGHLGREALSKLIR 409
Query: 497 NKFISYEHLNSSPVCESCVFGKHVRLPFVSSNNVTVMPFDILHSDLWTSPVLSSAGHRFY 556
+ IS + +C +C G H RLPF SS++ FD++H DLWTSP++S +G+++Y
Sbjct: 410 SSVISCTKDDLPHLCHACQLGHHTRLPFSSSSSRASNNFDLIHCDLWTSPIVSVSGYKYY 469
Query: 557 VLFLDDFTDFLWTFPLSNKSQVFEMFISLSNQIRTHFSQTIKCLQCDNGREFDNKSFHDY 616
++ LDD + ++WTFPL KS F + ++T F TIK +QCDNGREFDN +
Sbjct: 470 LVILDDCSHYIWTFPLRLKSDTFSTIANFFAHVKTQFGTTIKSVQCDNGREFDNSPARTF 529
Query: 617 CAANGLIFRFSCPHTSSQNGKAERKIRTINNMIRTLLAHASVPPSFWHHALQMATYLLNI 676
++G+ FR SCP+TS QNG+AER +RT+NN++R+LL A +PP +W AL AT L+N
Sbjct: 530 FLSHGVAFRMSCPYTSQQNGRAERSLRTLNNILRSLLFQACLPPVYWVEALHTATLLVNR 589
Query: 677 IPRKNLSNLSPTQLLYRRDPSYTHLRVFGCLCYPLVPSSTINKLQPRSTPCVFLGYPLHH 736
IP K LS+ +P LY P+Y HLRVFGC CYP + S+ +KL PRS+ CVFLGY H
Sbjct: 590 IPTKTLSSSTPYFHLYSTQPTYDHLRVFGCACYPNMSSTAPHKLAPRSSLCVFLGYSSEH 649
Query: 737 RGYKCFDLSHRKVIISRHVIFDETQFPFANLTPTP--SSTYEWLSDDIHPSV-------I 787
+GY+C +L ++I SRHV+FDE+ FPFA+++ +P SS + DD + +
Sbjct: 650 KGYRCLELGSNRIITSRHVVFDESFFPFADMSTSPMASSALDIFLDDNELTAQPPRAKFV 709
Query: 788 HRWTTQ---------TPSP-----------------------------DLQPTPVAPSAT 809
H T+ TP P QP ++P+ T
Sbjct: 710 HAGTSSAARGAVEPSTPPPAPSSIGPRSPATLAGPEAGPHGGSPAGAATSQPGAISPART 769
Query: 810 ATPPTST------------ASSSSPSDPSPSSSTPQSPPQ-------------------- 837
A P +T A+S + SP + T PP+
Sbjct: 770 AAPSAATSTTRAVTSAPRAATSGTTPSLSPLAGTAAPPPRAEVAASSTAATGRTLATRPV 829
Query: 838 ---PAPPVRTMATRSMRGIYKPRKLFNLSVTIDDPTISPLPKNPKLALSDPNWKSAMQSE 894
P +M TR G+ +P NL +SP+P++ + ALSDPNW++AMQ+E
Sbjct: 830 SIAPVDNAHSMRTRGKAGMAQPVDRLNLHAA----PLSPVPRSVREALSDPNWRAAMQAE 885
Query: 895 FDALIRNNTWDLVPRPCDVNIIRCMWIFRHKTKANGCFERYKARLVGDGRSQIAGVDCDE 954
FDAL+ N+TW LVPRP VN++ WIFRHK ++G +RYKAR V G +Q GVD DE
Sbjct: 886 FDALLANDTWSLVPRPRGVNLVTGKWIFRHKLHSDGSLDRYKARWVLRGFTQRPGVDYDE 945
Query: 955 TFSHVVKPATIRTVLTIALSRSWPIHQLDVQNAFLHGDLHETVYMHQPLGFRDPNHPDYV 1014
TFS VVKPAT+R VL++ALS+ WPIHQLDV+NAFLHG L ETVY QP GF DP+H D V
Sbjct: 946 TFSPVVKPATVRVVLSLALSQDWPIHQLDVKNAFLHGTLSETVYCIQPTGFADPSHADLV 1005
Query: 1015 CRLRKSLYGLKQAPRAWYQCFADYVSTIGFQHSTSDHSLFIYRRGSDMAYLLLYVDDIIL 1074
CRL KSLYGLKQAPRAW+ FA ++ ++GF + SD SLFI+RRG+D LLLYVDDI+L
Sbjct: 1006 CRLNKSLYGLKQAPRAWHHRFASHLISLGFIEAQSDSSLFIHRRGNDTVLLLLYVDDIVL 1065
Query: 1075 ISSSHDLRKSIMALLASEFAMKDLGPLSYFLGIAVTRHAGGLFLSQSTYARDIIARAGMA 1134
+SS L + ++A L EFAM D+GPL +FLGI VTR A GLFLSQ Y++DI+ RAGM
Sbjct: 1066 TASSASLLQQVIAALQREFAMTDMGPLHHFLGITVTRFASGLFLSQRQYSQDILERAGMG 1125
Query: 1135 SCHPSATPVDTKQKLSTSAGTPCDDPTLYRSLVGALQYLTFTRPDISYAVQQVCLHMHAP 1194
C P +TPVD KLS G P D T YRSL GALQYLTFTRPDI++AVQQVCL+MH P
Sbjct: 1126 ECKPCSTPVDVHSKLSAD-GPPVADSTQYRSLAGALQYLTFTRPDIAFAVQQVCLYMHDP 1184
Query: 1195 RTEHMLALKRILRYVQGTLQLGLHLYPSPIEKLISYTDADWGGCLDTRRSTSGYCVFLGD 1254
R H+ ALKRILRY+QGTL LGL + SP L+ YTDADW GC DTRRSTSGY VFLGD
Sbjct: 1185 REPHLAALKRILRYIQGTLSLGLTMRRSPPTDLVVYTDADWAGCPDTRRSTSGYAVFLGD 1244
Query: 1255 NLISWSSKRQPTLSRSSAEAEYRGVANVVSESCWLRNLLLELHFPLS*ATLVYCDNVSAI 1314
NL+SWSSKRQ T+SRSSAEAEYR VAN V+E+ WLR LL+ELH P AT+VYCDNVSA+
Sbjct: 1245 NLVSWSSKRQHTVSRSSAEAEYRAVANGVAEATWLRQLLMELHRPPRTATVVYCDNVSAM 1304
Query: 1315 YLSGNPVQHQRTKHIEMDIHFVREKVARGQARVLHVPSRHQIADIFTKGLPRVLFDDFRS 1374
YLS NPVQHQRTKH+E+D+HFVREKVA G RVLHVP+ Q AD+FTKGLP LF +FR+
Sbjct: 1305 YLSSNPVQHQRTKHVEIDLHFVREKVALGHVRVLHVPTTSQYADVFTKGLPTSLFQEFRT 1364
Query: 1375 SLSV 1378
SL++
Sbjct: 1365 SLTI 1368
>gb|AAP54850.1| putative gag-pol polyprotein [Oryza sativa (japonica cultivar-group)]
gi|37536522|ref|NP_922563.1| putative gag-pol polyprotein
[Oryza sativa (japonica cultivar-group)]
gi|13310887|gb|AAG13591.2| putative gag/pol polyprotein
[Oryza sativa]
Length = 1417
Score = 985 bits (2547), Expect = 0.0
Identities = 518/1018 (50%), Positives = 665/1018 (64%), Gaps = 68/1018 (6%)
Query: 381 VGSGQGIPIQGSGHTTLLTSYKTKPLSLSHVLHTPQIVKNLISVRQLTTDNNVSVCFDPY 440
VG+G +P+ + T + TS + L L +VL +P ++KNLISV++LT DNNVS+ FDP
Sbjct: 399 VGNGAKLPVTHTASTHIPTS--STDLHLHNVLVSPPLIKNLISVKKLTRDNNVSIEFDPT 456
Query: 441 GFSVIDFQTGIPLMRCNSPGDLYPVTPSFPFAGLAQSL-----WHSRLGHPSSSALQSLR 495
GFS+ D QT + +RC+SPGDLYP+ P A A S WH RLGHP S++L +
Sbjct: 457 GFSIKDLQTQVVKLRCDSPGDLYPLRLPSPHALSATSSPSVEHWHLRLGHPGSASLSKVL 516
Query: 496 SNKFISYEHLNSSPV-CESCVFGKHVRLPFVSSNNVTVMPFDILHSDLWTSPVLSSAGHR 554
+ ++ S+P C +C G +VRLPF SS++ T+ PF ++H+D+WTSP+ S++G++
Sbjct: 517 GS--FDFQCNKSAPHHCSACHVGTNVRLPFHSSSSQTLFPFQLVHTDVWTSPIYSNSGYK 574
Query: 555 FYVLFLDDFTDFLWTFPLSNKSQVFEMFISLSNQIRTHFSQTIKCLQCDNGREFDNKSFH 614
+YV+FLDDFT ++WTFP+ NKS+VF S T F + LQ DNG+E+D+ +
Sbjct: 575 YYVVFLDDFTHYIWTFPVRNKSEVFHTVRSFFAYAHTQFGLPVLALQTDNGKEYDSYALR 634
Query: 615 DYCAANGLIFRFSCPHTSSQNGKAERKIRTINNMIRTLLAHASVPPSFWHHALQMATYLL 674
+ +G + R SCP++S QNGKAER +RTIN+ +RT+L H++ P SFW ALQ AT+L+
Sbjct: 635 SLLSLHGAVLRLSCPYSSQQNGKAERILRTINDYVRTMLVHSAAPLSFWAEALQTATHLI 694
Query: 675 NIIPRKNLSNLSPTQLLYRRDPSYTHLRVFGCLCYPLVPSSTINKLQPRSTPCVFLGYPL 734
N P + +L+P QLL P+Y HLRVFGCLCYP ++ +KL PRS CVF+GYP
Sbjct: 695 NRRPCRATGSLTPYQLLLGAPPTYDHLRVFGCLCYPNTIATAPHKLSPRSLACVFIGYPA 754
Query: 735 HHRGYKCFDLSHRKVIISRHVIFDETQFPFANL-TPTPSSTYEWLSDDIHPSVIHRWTTQ 793
HRGY+C+D+ R+V SRHV F E FPF + +P PS+ P H T
Sbjct: 755 DHRGYRCYDMVSRRVFTSRHVTFVEDVFPFRDAPSPRPSAP---------PPPDHGDDTI 805
Query: 794 TPSPDLQPTPVAPSATATPPTSTASSSSPSDPSPSSSTP------------QSPPQPAPP 841
P V P TA P AS SP+ +PSS+ P SP +PP
Sbjct: 806 VLLPAPAQHVVTPVGTA-PAHDAASPPSPASSTPSSAAPAHDVAPPPSPETSSPASASPP 864
Query: 842 VRTMATRSMRGIYKPRKLFNLSVTIDDPTISPLPKNPKLALSDPNWKSAMQSEFDALIRN 901
M TR+ GI KP + ++ T T+SP P + + AL DPNW++AMQ+EFDAL+ N
Sbjct: 865 RHAMTTRARAGISKPNPRYAMTAT---STLSPTPSSVRAALRDPNWRAAMQAEFDALLAN 921
Query: 902 NTWDLVPRPCDVNIIRCMWIFRHKTKANGCFERYKARLVGDGRSQIAGVDCDETFSHVVK 961
TW LVPRP II W+F+ K A+G ++YKAR V G +Q GVD ETFS VVK
Sbjct: 922 RTWTLVPRPPGARIITGKWVFKTKLHADGSLDKYKARWVVRGFNQRPGVDFGETFSPVVK 981
Query: 962 PATIRTVLTIALSRSWPIHQLDVQNAFLHGDLHETVYMHQPLGFRDPNHPDYVCRLRKSL 1021
PATIRTVLT+ S+ WP HQLDV NAFLHG L E V QP GF D P VC L +SL
Sbjct: 982 PATIRTVLTLISSKQWPAHQLDVSNAFLHGHLQERVLCQQPTGFEDAARPADVCLLSRSL 1041
Query: 1022 YGLKQAPRAWYQCFADYVSTIGFQHSTSDHSLFIYRRGSDMAYLLLYVDDIILISSSHDL 1081
YGL+QAPRAW++ FAD+ +++GF S +D SLF+ RRGSD AYLLLYVDD+IL +SS L
Sbjct: 1042 YGLRQAPRAWFKRFADHATSLGFVQSRADPSLFVLRRGSDTAYLLLYVDDMILSASSSSL 1101
Query: 1082 RKSIMALLASEFAMKDLGPLSYFLGIAVTRHAGGLFLSQSTYARDIIARAGMASCHPSAT 1141
+ I+ L +EF +KD+GPL YFLGI V R A G LSQS YA
Sbjct: 1102 LQRIIDRLQAEFKVKDMGPLKYFLGIEVQRTADGFVLSQSKYA----------------- 1144
Query: 1142 PVDTKQKLSTSAGTPCDDPTLYRSLVGALQYLTFTRPDISYAVQQVCLHMHAPRTEHMLA 1201
DD + YRS+ GALQYLT TRPDI+YAVQQVCLHMHAPR H+
Sbjct: 1145 ---------------TDDSSWYRSIAGALQYLTLTRPDIAYAVQQVCLHMHAPREAHVTL 1189
Query: 1202 LKRILRYVQGTLQLGLHLYPSPIEKLISYTDADWGGCLDTRRSTSGYCVFLGDNLISWSS 1261
LKRILRY++GT GLHL S L +++DADW GC DTRRSTSG+C+FLGD+LISWSS
Sbjct: 1190 LKRILRYIKGTAAFGLHLRASTSPTLTAFSDADWAGCPDTRRSTSGFCIFLGDSLISWSS 1249
Query: 1262 KRQPTLSRSSAEAEYRGVANVVSESCWLRNLLLELHFPLS*ATLVYCDNVSAIYLSGNPV 1321
KRQ T+SRSSAEAEYRGVAN V+E WLR LL ELH + AT+ YCDN+S++Y+S NPV
Sbjct: 1250 KRQTTVSRSSAEAEYRGVANAVAECTWLRQLLGELHCRVPQATIAYCDNISSVYMSKNPV 1309
Query: 1322 QHQRTKHIEMDIHFVREKVARGQARVLHVPSRHQIADIFTKGLPRVLFDDFRSSLSVG 1379
H+RTKHIE+DIHFVREKVA G+ RVL +PS HQ AD+FTKGLP +F++FR+SL VG
Sbjct: 1310 HHKRTKHIELDIHFVREKVALGELRVLPIPSAHQFADVFTKGLPSSMFNEFRASLCVG 1367
>emb|CAE05956.3| OSJNBb0088C09.15 [Oryza sativa (japonica cultivar-group)]
gi|32487794|emb|CAE05417.1| OSJNBa0035I04.5 [Oryza sativa
(japonica cultivar-group)]
Length = 1246
Score = 821 bits (2120), Expect = 0.0
Identities = 464/945 (49%), Positives = 579/945 (61%), Gaps = 52/945 (5%)
Query: 457 NSPGDLYPVTPSFPFAGLAQSLWHSRLGHPSSSALQSLRSNKFISYEHLNSSPVCESCVF 516
+SP V P++ AGL +L L +P+S L + ++ S + + + + S +
Sbjct: 320 SSPPPAGSVQPAWDQAGLVAALNGMTLHNPNSWVLNTGATSHMSSIDGILVTRLPNSQTY 379
Query: 517 ---GKHVRLPFVSSNN----VTVMPFDILHSDLWTSPVLSSAGHRFYVLFLDDFTDFLWT 569
G +P V + FD+ H + +P L S HR V F++
Sbjct: 380 ITVGSGHSIPIVCRGTSFLPIGTTRFDLRH--VLVAPSLKSDVHRHIVEFVE-------- 429
Query: 570 FPLSNKSQVFEMFISLSNQIRTHFSQTIKCLQCDNGREFDNKSFHDYCAANGLIFRFSCP 629
T F +KCLQ DNG EF N + + A G + R SCP
Sbjct: 430 ------------------YAHTQFGHRLKCLQADNGTEFVNHNTTSFLAGRGSLLRLSCP 471
Query: 630 HTSSQNGKAERKIRTINNMIRTLLAHASVPPSFWHHALQMATYLLNIIPRKNLSNLSPTQ 689
+TS QNGKAER IRT+NN IRTLL AS+PPS+W L ATYLLN P +++N P Q
Sbjct: 472 YTSPQNGKAERMIRTLNNSIRTLLLQASMPPSYWAEGLATATYLLNRRPSSSVNNSIPFQ 531
Query: 690 LLYRRDPSYTHLRVFGCLCYPLVPSSTINKLQPRSTPCVFLGYPLHHRGYKCFDLSHRKV 749
LL+R+ P+Y+ LRVFGCLCYP + ++ +KL P S CVFLGYP H+GY C ++S R++
Sbjct: 532 LLHRKIPNYSMLRVFGCLCYPNLSATAAHKLAPYSAACVFLGYPSSHKGYCCLNISTRRI 591
Query: 750 IISRHVIFDETQFPFANLTPTPSSTYEWLSDDIH-PSVIHRWTTQTPSPDLQPTPVAPSA 808
IIS HVIFDETQFPF+ P +S+ ++L D PSVI P L P +
Sbjct: 592 IISCHVIFDETQFPFSG-DPVDASSLDFLLQDAPAPSVIAPSLAGVEQPHLPHAPFPVNV 650
Query: 809 TATPPTSTASSSSPSDP---SPSSSTPQSPPQPAPPVRTMATRSMRGI----YKPRKLFN 861
PT S+ P P++ Q + ++ +G Y +F
Sbjct: 651 EQRLPTGAPSTKDEHLPYYVQPAAHCGQDDGKFHTAGCHVSIFLKQGTIVTSYPAVHVFF 710
Query: 862 LSVTIDDPTISPLPKNPKLALSDPNWK--------SAMQSEFDALIRNNTWDLVPRPCDV 913
+ PLP S P+ + +AM EF ALI N TW LVPRP
Sbjct: 711 TTSRHGGAIPVPLPTTTGADDSAPSHRCGCTHTSPAAMAEEFKALIDNGTWRLVPRPPGA 770
Query: 914 NIIRCMWIFRHKTKANGCFERYKARLVGDGRSQIAGVDCDETFSHVVKPATIRTVLTIAL 973
N++ WIF+HK ++G R+KAR V G SQ G+D DETFS VVKP+TIR VL+IA
Sbjct: 771 NVVTGKWIFKHKFHSDGSLARHKARWVVHGYSQQHGIDYDETFSPVVKPSTIRVVLSIAT 830
Query: 974 SRSWPIHQLDVQNAFLHGDLHETVYMHQPLGFRDPNHPDYVCRLRKSLYGLKQAPRAWYQ 1033
SRSWPIHQLDV+NAFLHG L ETVY Q GF DP PD VC L++SLYGLKQAPRAWYQ
Sbjct: 831 SRSWPIHQLDVKNAFLHGTLDETVYCQQSSGFIDPAAPDAVCLLQRSLYGLKQAPRAWYQ 890
Query: 1034 CFADYVSTIGFQHSTSDHSLFIYRRGSDMAYLLLYVDDIILISSSHDLRKSIMALLASEF 1093
FA Y+ +GF S SD SLFI R G +AYLLLYVDDIIL++SS +L I A L +EF
Sbjct: 891 RFATYIRQLGFTPSASDTSLFILRDGDRLAYLLLYVDDIILMASSAELLCHITARLHTEF 950
Query: 1094 AMKDLGPLSYFLGIAVTRHAGGLFLSQSTYARDIIARAGMASCHPSATPVDTKQKLSTSA 1153
AM DLG L +FLGI+V R LFLSQ YA D++ RAGM+ HP+ATPVD + KLS S
Sbjct: 951 AMTDLGDLHFFLGISVRRTPDDLFLSQRQYAVDLLQRAGMSEYHPTATPVDARAKLSASE 1010
Query: 1154 GTPCDDPTLYRSLVGALQYLTFTRPDISYAVQQVCLHMHAPRTEHMLALKRILRYVQGTL 1213
G P DPT YRSL ALQYLT TRP+I+YAVQQVC MH P H+ +KRI+RY++G+L
Sbjct: 1011 GAPVADPTEYRSLADALQYLTLTRPEIAYAVQQVCRFMHDPHEPHLALVKRIMRYIKGSL 1070
Query: 1214 QLGLHLYPSPIEKLISYTDADWGGCLDTRRSTSGYCVFLGDNLISWSSKRQPTLSRSSAE 1273
GLH+ P+ L +Y+DADW GC D+RRSTSGYC+FLGDNL+SWSSKRQ T+SRSSAE
Sbjct: 1071 SAGLHIGTGPVGSLTAYSDADWAGCPDSRRSTSGYCIFLGDNLVSWSSKRQTTVSRSSAE 1130
Query: 1274 AEYRGVANVVSESCWLRNLLLELHFPLS*ATLVYCDNVSAIYLSGNPVQHQRTKHIEMDI 1333
AEYR VA+ ++E C LR LL ELH P+S T+V+CDNVSA Y++ NPV H+ TKHIE+DI
Sbjct: 1131 AEYRAVAHAIAECCCLRQLLQELHAPISTTTVVFCDNVSAAYMTANPVHHRCTKHIEIDI 1190
Query: 1334 HFVREKVARGQARVLHVPSRHQIADIFTKGLPRVLFDDFRSSLSV 1378
HFVREKVA GQ RVLHVPS HQ D TKGLP LF DFRSSL V
Sbjct: 1191 HFVREKVALGQVRVLHVPSTHQFPDFMTKGLPVQLFTDFRSSLCV 1235
>gb|AAD21687.1| Strong similarity to gi|3600044 T12H20.12 protease homolog from
Arabidopsis thaliana BAC gb|AF080119 and is a member of
the reverse transcriptase family PF|00078
gi|25301706|pir||C86438 hypothetical protein F28K20.17 -
Arabidopsis thaliana
Length = 1415
Score = 772 bits (1993), Expect = 0.0
Identities = 427/1026 (41%), Positives = 581/1026 (56%), Gaps = 45/1026 (4%)
Query: 381 VGSGQGIPIQGSGHTTLLTSYKTKPLSLSHVLHTPQIVKNLISVRQLTTDNNVSVCFDPY 440
VG G +PI +G TT+ +S PL+ VL P I K+L+SV +L D V FD
Sbjct: 353 VGDGTYLPITHTGSTTIKSSNGKIPLN--EVLVVPNIQKSLLSVSKLCDDYPCGVYFDAN 410
Query: 441 GFSVIDFQTGIPLMRCNSPGDLYPVTPSFPFAGL--------AQSLWHSRLGHPSSSALQ 492
+ID QT + LY V + F L + +WH RLGH +S ALQ
Sbjct: 411 KVCIIDLQTQKVVTTGPRRNGLY-VLENQEFVALYSNRQCAATEEVWHHRLGHANSKALQ 469
Query: 493 SLRSNKFISYEHLNSSPVCESCVFGKHVRLPFVSSNNVTVMPFDILHSDLW-TSPVLSSA 551
L+++K I +SPVCE C GK RLPF+ S++ + P D +H DLW SPV+S+
Sbjct: 470 HLQNSKAIQINKSRTSPVCEPCQMGKSSRLPFLISDSRVLHPLDRIHCDLWGPSPVVSNQ 529
Query: 552 GHRFYVLFLDDFTDFLWTFPLSNKSQVFEMFISLSNQIRTHFSQTIKCLQCDNGREFDNK 611
G ++Y +F+DD++ + W +PL NKS+ +FIS + + IK Q D G EF +
Sbjct: 530 GLKYYAIFVDDYSRYSWFYPLHNKSEFLSVFISFQKLVENQLNTKIKVFQSDGGGEFVSN 589
Query: 612 SFHDYCAANGLIFRFSCPHTSSQNGKAERKIRTINNMIRTLLAHASVPPSFWHHALQMAT 671
+ + +G+ R SCP+T QNG AERK R + + ++L H+ P FW + A
Sbjct: 590 KLKTHLSEHGIHHRISCPYTPQQNGLAERKHRHLVELGLSMLFHSHTPQKFWVESFFTAN 649
Query: 672 YLLNIIPRKNLSNLSPTQLLYRRDPSYTHLRVFGCLCYPLVPSSTINKLQPRSTPCVFLG 731
Y++N +P L NLSP + L+ P Y+ LRVFG CYP + NK PRS CVFLG
Sbjct: 650 YIINRLPSSVLKNLSPYEALFGEKPDYSSLRVFGSACYPCLRPLAQNKFDPRSLQCVFLG 709
Query: 732 YPLHHRGYKCFDLSHRKVIISRHVIFDETQFPFANLTPTPSSTYEWLSDDIHPSVIHRWT 791
Y ++GY+CF KV ISR+VIF+E++ PF Y+ L ++ W
Sbjct: 710 YNSQYKGYRCFYPPTGKVYISRNVIFNESELPF-------KEKYQSLVPQYSTPLLQAWQ 762
Query: 792 TQTPSPDLQPTPVAPSATATPP------TSTASSSSPSDPSPSSSTPQSPPQPAPPVR-- 843
S P AP + P + + +DP P+S+ S + P
Sbjct: 763 HNKISEI--SVPAAPVQLFSKPIDLNTYAGSQVTEQLTDPEPTSNNEGSDEEVNPVAEEI 820
Query: 844 -----------TMATRSMRGIYKPRKLFNLSVTIDDPTISPLPKNPKLALSDPNWKSAMQ 892
M TRS GI KP + L I + PK A+ P W A+
Sbjct: 821 AANQEQVINSHAMTTRSKAGIQKPNTRYAL---ITSRMNTAEPKTLASAMKHPGWNEAVH 877
Query: 893 SEFDALIRNNTWDLVPRPCDVNIIRCMWIFRHKTKANGCFERYKARLVGDGRSQIAGVDC 952
E + + +TW LVP D+NI+ W+F+ K +G ++ KARLV G Q GVD
Sbjct: 878 EEINRVHMLHTWSLVPPTDDMNILSSKWVFKTKLHPDGSIDKLKARLVAKGFDQEEGVDY 937
Query: 953 DETFSHVVKPATIRTVLTIALSRSWPIHQLDVQNAFLHGDLHETVYMHQPLGFRDPNHPD 1012
ETFS VV+ ATIR VL ++ S+ WPI QLDV NAFLHG+L E V+M+QP GF DP P
Sbjct: 938 LETFSPVVRTATIRLVLDVSTSKGWPIKQLDVSNAFLHGELQEPVFMYQPSGFIDPQKPT 997
Query: 1013 YVCRLRKSLYGLKQAPRAWYQCFADYVSTIGFQHSTSDHSLFIYRRGSDMAYLLLYVDDI 1072
+VCRL K++YGLKQAPRAW+ F++++ GF S SD SLF+ + + YLLLYVDDI
Sbjct: 998 HVCRLTKAIYGLKQAPRAWFDTFSNFLLDYGFVCSKSDPSLFVCHQDGKILYLLLYVDDI 1057
Query: 1073 ILISSSHDLRKSIMALLASEFAMKDLGPLSYFLGIAVTRHAGGLFLSQSTYARDIIARAG 1132
+L S L + ++ L + F+MKDLGP YFLGI + +A GLFL Q+ YA DI+ +AG
Sbjct: 1058 LLTGSDQSLLEDLLQALKNRFSMKDLGPPRYFLGIQIEDYANGLFLHQTAYATDILQQAG 1117
Query: 1133 MASCHPSATPVDTKQKLSTSAGTPCDDPTLYRSLVGALQYLTFTRPDISYAVQQVCLHMH 1192
M+ C+P TP+ Q+L +PT +RSL G LQYLT TRPDI +AV +C MH
Sbjct: 1118 MSDCNPMPTPL--PQQLDNLNSELFAEPTYFRSLAGKLQYLTITRPDIQFAVNFICQRMH 1175
Query: 1193 APRTEHMLALKRILRYVQGTLQLGLHLYPSPIEKLISYTDADWGGCLDTRRSTSGYCVFL 1252
+P T LKRILRY++GT+ +GL + + L +Y+D+D GC +TRRST+G+C+ L
Sbjct: 1176 SPTTSDFGLLKRILRYIKGTIGMGLPIKRNSTLTLSAYSDSDHAGCKNTRRSTTGFCILL 1235
Query: 1253 GDNLISWSSKRQPTLSRSSAEAEYRGVANVVSESCWLRNLLLELHFPLS*ATLVYCDNVS 1312
G NLISWS+KRQPT+S SS EAEYR + E W+ LL +L P T VYCDN+S
Sbjct: 1236 GSNLISWSAKRQPTVSNSSTEAEYRALTYAAREITWISFLLRDLGIPQYLPTQVYCDNLS 1295
Query: 1313 AIYLSGNPVQHQRTKHIEMDIHFVREKVARGQARVLHVPSRHQIADIFTKGLPRVLFDDF 1372
A+YLS NP H R+KH + D H++RE+VA G H+ + Q+AD+FTK LPR F D
Sbjct: 1296 AVYLSANPALHNRSKHFDTDYHYIREQVALGLIETQHISATFQLADVFTKSLPRRAFVDL 1355
Query: 1373 RSSLSV 1378
RS L V
Sbjct: 1356 RSKLGV 1361
>emb|CAC37623.1| copia-like polyprotein [Arabidopsis thaliana]
Length = 1466
Score = 771 bits (1990), Expect = 0.0
Identities = 443/1057 (41%), Positives = 585/1057 (54%), Gaps = 63/1057 (5%)
Query: 365 NLTSYSNLSHLNQKLYVGSGQGIPIQGSGHTTLLTSYKTKPLSLSHVLHTPQIVKNLISV 424
N T+Y N + VG G +PI G TT+ +S T PL+ VL P I K+L+SV
Sbjct: 343 NATTYEG----NDAVLVGDGTYLPITHVGSTTISSSKGTIPLN--EVLVCPAIQKSLLSV 396
Query: 425 RQLTTDNNVSVCFDPYGFSVIDFQTGIPLMRCNSPGDLYPVTPSFPFAGL--------AQ 476
+L D V FD +ID T + + LY + S F L +
Sbjct: 397 SKLCDDYPCGVYFDANKVCIIDLTTQKVVSKGPRNNGLYMLENS-EFVALYSNRQCAASM 455
Query: 477 SLWHSRLGHPSSSALQSLRSNKFISYEHLNSSPVCESCVFGKHVRLPFVSSNNVTVMPFD 536
WH RLGH +S LQ L + K I +SPVCE C GK RL F SS+ + P D
Sbjct: 456 ETWHHRLGHSNSKILQQLLTRKEIQVNKSRTSPVCEPCQMGKSTRLQFFSSDFRALKPLD 515
Query: 537 ILHSDLW-TSPVLSSAGHRFYVLFLDDFTDFLWTFPLSNKSQVFEMFISLSNQIRTHFSQ 595
+H DLW SPV+S+ G ++Y +F+DDF+ F W FPL KS+ +FI+ +
Sbjct: 516 RVHCDLWGPSPVVSNQGFKYYAVFVDDFSRFSWFFPLRMKSKFISVFIAYQKLVENQLGT 575
Query: 596 TIKCLQCDNGREFDNKSFHDYCAANGLIFRFSCPHTSSQNGKAERKIRTINNMIRTLLAH 655
IK Q D G EF + ++ +G+ R SCP+T QNG AERK R + + ++L H
Sbjct: 576 KIKEFQSDGGGEFTSNKLKEHFREHGIHHRISCPYTPQQNGVAERKHRHLVELGLSMLYH 635
Query: 656 ASVPPSFWHHALQMATYLLNIIPRKNLSNLSPTQLLYRRDPSYTHLRVFGCLCYPLVPSS 715
+ P FW A A YL N++P L +SP + L+++ YT LRVFG CYP +
Sbjct: 636 SHTPLKFWVEAFFTANYLSNLLPSSVLKEISPYETLFQQKVDYTPLRVFGTACYPCLRPL 695
Query: 716 TINKLQPRSTPCVFLGYPLHHRGYKCFDLSHRKVIISRHVIFDETQFPFA----NLTPTP 771
NK PRS CVFLGY ++GY+C KV ISRHVIFDE QFPF +L P
Sbjct: 696 AKNKFDPRSLQCVFLGYHNQYKGYRCLYPPTGKVYISRHVIFDEAQFPFKEKYHSLVPKY 755
Query: 772 SSTY--EWLSDDIHPSVIHRWTTQTPSPDLQP-----TPVAPSATA------TPPTSTAS 818
+T W D+ P + PS LQP TP+A S T +
Sbjct: 756 QTTLLQAWQHTDLTPPSV-------PSSQLQPLARQMTPMATSENQPMMNYETEEAVNVN 808
Query: 819 SSSPSDPSPSSSTPQSPPQPAPPVRT-----------------MATRSMRGIYKPRKLFN 861
+ SD + S + + AP + M TRS GI KP +
Sbjct: 809 METSSDEE-TESNDEFDHEVAPVLNDQNEDNALGQGSLENLHPMITRSKDGIQKPNPRYA 867
Query: 862 LSVTIDDPTISPLPKNPKLALSDPNWKSAMQSEFDALIRNNTWDLVPRPCDVNIIRCMWI 921
L V+ + PK A+ P+W +A+ E D + NTW LVP D+NI+ W+
Sbjct: 868 LIVS---KSSFDEPKTITTAMKHPSWNAAVMDEIDRIHMLNTWSLVPATEDMNILTSKWV 924
Query: 922 FRHKTKANGCFERYKARLVGDGRSQIAGVDCDETFSHVVKPATIRTVLTIALSRSWPIHQ 981
F+ K K +G ++ KARLV G Q GVD ETFS VV+ ATIR VL A + WP+ Q
Sbjct: 925 FKTKLKPDGTIDKLKARLVAKGFDQEEGVDYLETFSPVVRTATIRLVLDTATANEWPLKQ 984
Query: 982 LDVQNAFLHGDLHETVYMHQPLGFRDPNHPDYVCRLRKSLYGLKQAPRAWYQCFADYVST 1041
LDV NAFLHG+L E V+M QP GF DPN P++VCRL K+LYGLKQAPRAW+ F++++
Sbjct: 985 LDVSNAFLHGELQEPVFMFQPSGFVDPNKPNHVCRLTKALYGLKQAPRAWFDTFSNFLLD 1044
Query: 1042 IGFQHSTSDHSLFIYRRGSDMAYLLLYVDDIILISSSHDLRKSIMALLASEFAMKDLGPL 1101
GF+ STSD SLF+ + LLLYVDDI+L S L ++ L + F+MKDLGP
Sbjct: 1045 FGFECSTSDPSLFVCHQNGQSLILLLYVDDILLTGSDQLLMDKLLQALNNRFSMKDLGPP 1104
Query: 1102 SYFLGIAVTRHAGGLFLSQSTYARDIIARAGMASCHPSATPVDTKQKLSTSAGTPCDDPT 1161
YFLGI + + GLFL Q YA DI+ +AGM C+P TP+ Q L P ++PT
Sbjct: 1105 RYFLGIEIESYNNGLFLHQHAYASDILHQAGMTECNPMPTPL--PQHLEDLNSEPFEEPT 1162
Query: 1162 LYRSLVGALQYLTFTRPDISYAVQQVCLHMHAPRTEHMLALKRILRYVQGTLQLGLHLYP 1221
+RSL G LQYLT TRPDI YAV +C MHAP LKRILRYV+GT+ +GL +
Sbjct: 1163 YFRSLAGKLQYLTITRPDIQYAVNFICQRMHAPTNSDFGLLKRILRYVKGTINMGLPIRK 1222
Query: 1222 SPIEKLISYTDADWGGCLDTRRSTSGYCVFLGDNLISWSSKRQPTLSRSSAEAEYRGVAN 1281
L + D+D+ GC DTRRST+G+C+ LG LISWS+KRQPT+S SS EAEYR +++
Sbjct: 1223 HHNPVLSGFCDSDYAGCKDTRRSTTGFCILLGSTLISWSAKRQPTISHSSTEAEYRALSD 1282
Query: 1282 VVSESCWLRNLLLELHFPLS*ATLVYCDNVSAIYLSGNPVQHQRTKHIEMDIHFVREKVA 1341
E W+ +LL +L T V+CDN+SA+YLS NP H+R+KH + D H++RE+VA
Sbjct: 1283 TAREITWISSLLRDLGISQHQPTRVFCDNLSAVYLSANPALHKRSKHFDKDFHYIRERVA 1342
Query: 1342 RGQARVLHVPSRHQIADIFTKGLPRVLFDDFRSSLSV 1378
G H+P+ Q+AD+FTK LPR F R+ L V
Sbjct: 1343 LGLIETQHIPATIQLADVFTKSLPRRPFITLRAKLGV 1379
>emb|CAB81170.1| retrotransposon like protein [Arabidopsis thaliana]
gi|4539447|emb|CAB40035.1| retrotransposon like protein
[Arabidopsis thaliana] gi|7444419|pir||T04204
hypothetical protein T4F9.150 - Arabidopsis thaliana
Length = 1515
Score = 751 bits (1938), Expect = 0.0
Identities = 435/1084 (40%), Positives = 593/1084 (54%), Gaps = 93/1084 (8%)
Query: 376 NQKLYVGSGQGIPIQGSGHTTLLTSYKTKPLSLSHVLHTPQIVKNLISVRQLTTDNNVSV 435
+ + VG+G +PI G L S T PL VL P I K+L+SV +LT D S
Sbjct: 350 DDSVIVGNGDFLPITHIGTIPLNISQGTLPLE--DVLVCPGITKSLLSVSKLTDDYPCSF 407
Query: 436 CFDPYGFSVIDFQTGIPLMRCNSPGDLYPVTPSFPFAGLAQS--------LWHSRLGHPS 487
FD + D +T L + N LY V PF + +WH RLGHP+
Sbjct: 408 TFDSDSVVIKDKRTQQLLTQGNKHKGLY-VLKDVPFQTYYSTRQQSSDDEVWHQRLGHPN 466
Query: 488 SSALQSLRSNKFISYEHLNSSPVCESCVFGKHVRLPFVSSNNVTVMPFDILHSDLW-TSP 546
LQ L K I SS +CE+C GK RLPFV+S V+ P + +H DLW +P
Sbjct: 467 KEVLQHLIKTKAIVVNK-TSSNMCEACQMGKVCRLPFVASEFVSSRPLERIHCDLWGPAP 525
Query: 547 VLSSAGHRFYVLFLDDFTDFLWTFPLSNKSQVFEMFISLSNQIRTHFSQTIKCLQCDNGR 606
V S+ G ++YV+F+D+++ F W +PL KS F +F+ + + I QCD G
Sbjct: 526 VTSAQGFQYYVIFIDNYSRFTWFYPLKLKSDFFSVFVLFQQLVENQYQHKIAMFQCDGGG 585
Query: 607 EFDNKSFHDYCAANGLIFRFSCPHTSSQNGKAERKIRTINNMIRTLLAHASVPPSFWHHA 666
EF + F + A+ G+ SCPHT QNG AER+ R + + +L+ H+ VP W A
Sbjct: 586 EFVSYKFVAHLASCGIKQLISCPHTPQQNGIAERRHRYLTELGLSLMFHSKVPHKLWVEA 645
Query: 667 LQMATYLLNIIPRKNLS-NLSPTQLLYRRDPSYTHLRVFGCLCYPLVPSSTINKLQPRST 725
+ +L N++P LS N SP ++L+ P YT LRVFG CYP + NK P+S
Sbjct: 646 FFTSNFLSNLLPSSTLSDNKSPYEMLHGTPPVYTALRVFGSACYPYLRPYAKNKFDPKSL 705
Query: 726 PCVFLGYPLHHRGYKCFDLSHRKVIISRHVIFDETQFPFANL------------------ 767
CVFLGY ++GY+C KV I RHV+FDE +FP++++
Sbjct: 706 LCVFLGYNNKYKGYRCLHPPTGKVYICRHVLFDERKFPYSDIYSQFQTISGSPLFTAWQK 765
Query: 768 --------TPTPSSTYEWLSDDIHPSVIHRWTTQTP-SPDLQPTPVAPSATAT------- 811
TPS+ E D I PS + T +P++ T AP
Sbjct: 766 GFSSTALSRETPSTNVE---DIIFPSATVSSSVPTGCAPNIAETATAPDVDVAAAHDMVV 822
Query: 812 PPTSTASSSSPSDPSPSSS-----------------TPQS------PPQPAPPVRT---- 844
PP+ S+S P+ P S+S TPQS PP+++
Sbjct: 823 PPSPITSTSLPTQPEESTSDQNHYSTDSETAISSAMTPQSINVSLFEDSDFPPLQSVISS 882
Query: 845 ----------MATRSMRGIYKPRKLFNLSVTIDDPTISPLPKNPKLALSDPNWKSAMQSE 894
M TR+ GI KP + L + P PK+ K AL D W +AM E
Sbjct: 883 TTAAPETSHPMITRAKSGITKPNPKYALFSVKSN---YPEPKSVKEALKDEGWTNAMGEE 939
Query: 895 FDALIRNNTWDLVPRPCDVNIIRCMWIFRHKTKANGCFERYKARLVGDGRSQIAGVDCDE 954
+ +TWDLVP ++ C W+F+ K ++G +R KARLV G Q GVD E
Sbjct: 940 MGTMHETDTWDLVPPEMVDRLLGCKWVFKTKLNSDGSLDRLKARLVARGYEQEEGVDYVE 999
Query: 955 TFSHVVKPATIRTVLTIALSRSWPIHQLDVQNAFLHGDLHETVYMHQPLGFRDPNHPDYV 1014
T+S VV+ AT+R++L +A W + QLDV+NAFLH +L ETV+M QP GF DP+ PDYV
Sbjct: 1000 TYSPVVRSATVRSILHVATINKWSLKQLDVKNAFLHDELKETVFMTQPPGFEDPSRPDYV 1059
Query: 1015 CRLRKSLYGLKQAPRAWYQCFADYVSTIGFQHSTSDHSLFIYRRGSDMAYLLLYVDDIIL 1074
C+L+K++Y LKQAPRAW+ F+ Y+ GF S SD SLF+Y +G D+ +LLLYVDD+IL
Sbjct: 1060 CKLKKAIYDLKQAPRAWFDKFSSYLLKYGFICSFSDPSLFVYLKGRDVMFLLLYVDDMIL 1119
Query: 1075 ISSSHDLRKSIMALLASEFAMKDLGPLSYFLGIAVTRHAGGLFLSQSTYARDIIARAGMA 1134
++ L + ++ +L++EF MKD+G L YFLGI H GLFLSQ Y D++ AGM+
Sbjct: 1120 TGNNDVLLQQLLNILSTEFRMKDMGALHYFLGIQAHYHNDGLFLSQEKYTSDLLVNAGMS 1179
Query: 1135 SCHPSATPVDTKQKLSTSAGTPCDDPTLYRSLVGALQYLTFTRPDISYAVQQVCLHMHAP 1194
C S+ P + L P +PT +R L G LQYLT TRPDI +AV VC MHAP
Sbjct: 1180 DC--SSMPTPLQLDLLQGNNKPFPEPTYFRRLAGKLQYLTLTRPDIQFAVNFVCQKMHAP 1237
Query: 1195 RTEHMLALKRILRYVQGTLQLGLHLYPSPIEKLISYTDADWGGCLDTRRSTSGYCVFLGD 1254
LKRIL Y++GT+ +G++L + L Y+D+DW GC DTRRST G+C FLG
Sbjct: 1238 TMSDFHLLKRILHYLKGTMTMGINLSSNTDSVLRCYSDSDWAGCKDTRRSTGGFCTFLGY 1297
Query: 1255 NLISWSSKRQPTLSRSSAEAEYRGVANVVSESCWLRNLLLELHFPLS*ATLVYCDNVSAI 1314
N+ISWS+KR PT+S+SS EAEYR ++ SE W+ LL E+ P +YCDN+SA+
Sbjct: 1298 NIISWSAKRHPTVSKSSTEAEYRTLSFAASEVSWIGFLLQEIGLPQQQIPEMYCDNLSAV 1357
Query: 1315 YLSGNPVQHQRTKHIEMDIHFVREKVARGQARVLHVPSRHQIADIFTKGLPRVLFDDFRS 1374
YLS NP H R+KH ++D ++VRE+VA G V H+P+ Q+ADIFTK LP+ F D R
Sbjct: 1358 YLSANPALHSRSKHFQVDYYYVRERVALGALTVKHIPASQQLADIFTKSLPQAPFCDLRF 1417
Query: 1375 SLSV 1378
L V
Sbjct: 1418 KLGV 1421
>gb|AAD43604.1| T3P18.3 [Arabidopsis thaliana] gi|25301688|pir||H96650 protein
T3P18.3 [imported] - Arabidopsis thaliana
Length = 1309
Score = 719 bits (1857), Expect = 0.0
Identities = 433/1057 (40%), Positives = 566/1057 (52%), Gaps = 98/1057 (9%)
Query: 365 NLTSYSNLSHLNQKLYVGSGQGIPIQGSGHTTLLTSYKTKPLSLSHVLHTPQIVKNLISV 424
N T+Y N + VG G +PI G TT+ +S T PL+ VL P I K+L+SV
Sbjct: 221 NATTYEG----NDAVLVGDGTYLPITHVGSTTISSSKGTIPLN--EVLVCPAIQKSLLSV 274
Query: 425 RQLTTDNNVSVCFDPYGFSVIDFQTGIPLMRCNSPGDLYPVTPSFPFAGL--------AQ 476
+L D V FD +ID T + + LY + S F L +
Sbjct: 275 SKLCDDYPCGVYFDANKVCIIDLTTQKVVSKGPRNNGLYMLENS-EFVALYSNRQCAASM 333
Query: 477 SLWHSRLGHPSSSALQSLRSNKFISYEHLNSSPVCESCVFGKHVRLPFVSSNNVTVMPFD 536
WH RLGH +S LQ L + K I +SPVCE C GK RL F SS+ + P D
Sbjct: 334 ETWHHRLGHSNSKILQQLLTRKEIQVNKSRTSPVCEPCQMGKSTRLQFFSSDFRALKPLD 393
Query: 537 ILHSDLW-TSPVLSSAGHRFYVLFLDDFTDFLWTFPLSNKSQVFEMFISLSNQIRTHFSQ 595
+H DLW SPV+S N+ V NQ+ T
Sbjct: 394 RVHCDLWGPSPVVS------------------------NQKLV-------ENQLGTK--- 419
Query: 596 TIKCLQCDNGREFDNKSFHDYCAANGLIFRFSCPHTSSQNGKAERKIRTINNMIRTLLAH 655
IK Q D G EF + ++ +G+ R SCP+T QNG AERK R + + ++L H
Sbjct: 420 -IKEFQSDGGGEFTSNKLKEHFREHGIHHRISCPYTPQQNGVAERKHRHLVELGLSMLYH 478
Query: 656 ASVPPSFWHHALQMATYLLNIIPRKNLSNLSPTQLLYRRDPSYTHLRVFGCLCYPLVPSS 715
+ P FW A A YL N++P L +SP + L+++ YT LRVFG CYP +
Sbjct: 479 SHTPLKFWVEAFFTANYLSNLLPSSVLKEISPYETLFQQKVDYTPLRVFGTACYPCLRPL 538
Query: 716 TINKLQPRSTPCVFLGYPLHHRGYKCFDLSHRKVIISRHVIFDETQFPFA----NLTPTP 771
NK PRS CVFLGY ++GY+C KV ISRHVIFDE QFPF +L P
Sbjct: 539 AKNKFDPRSLQCVFLGYHNQYKGYRCLYPPTGKVYISRHVIFDEAQFPFKEKYHSLVPKY 598
Query: 772 SSTY--EWLSDDIHPSVIHRWTTQTPSPDLQPTP--VAPSATA---------TPPTSTAS 818
+T W D+ P + PS LQP V P AT+ T +
Sbjct: 599 QTTLLQAWQHTDLTPPSV-------PSSQLQPLARQVTPMATSENQPMMNYETEEAVNVN 651
Query: 819 SSSPSDPSPSSSTPQSPPQPAPPVRT-----------------MATRSMRGIYKPRKLFN 861
+ SD + S + + AP + M TRS GI KP +
Sbjct: 652 METSSDEE-TESNDEFDHEVAPVLNDQNEDNALGQGSLENLHPMITRSKDGIQKPNPRYA 710
Query: 862 LSVTIDDPTISPLPKNPKLALSDPNWKSAMQSEFDALIRNNTWDLVPRPCDVNIIRCMWI 921
L V+ + PK A+ P W +A+ E D + NTW LVP D+NI+ W+
Sbjct: 711 LIVS---KSSFDEPKTITTAMKHPGWNAAVMDEIDRIHMLNTWSLVPATEDMNILTSKWV 767
Query: 922 FRHKTKANGCFERYKARLVGDGRSQIAGVDCDETFSHVVKPATIRTVLTIALSRSWPIHQ 981
F+ K K +G ++ KARLV G Q GVD ETFS VV+ ATIR VL A + WP+ Q
Sbjct: 768 FKTKLKPDGTIDKLKARLVAKGFDQEEGVDYLETFSPVVRTATIRLVLDTATANEWPLKQ 827
Query: 982 LDVQNAFLHGDLHETVYMHQPLGFRDPNHPDYVCRLRKSLYGLKQAPRAWYQCFADYVST 1041
LDV NAFLHG+L E V+M QP GF DPN P++VCRL K+LYGLKQAPRAW+ F++++
Sbjct: 828 LDVSNAFLHGELQEPVFMFQPSGFVDPNKPNHVCRLTKALYGLKQAPRAWFDTFSNFLLD 887
Query: 1042 IGFQHSTSDHSLFIYRRGSDMAYLLLYVDDIILISSSHDLRKSIMALLASEFAMKDLGPL 1101
GF+ STSD SLF+ + LLLYVDDI+L S L ++ L + F+MKDLGP
Sbjct: 888 FGFECSTSDPSLFVCHQNGQSLILLLYVDDILLTGSDQLLMDKLLQALNNRFSMKDLGPP 947
Query: 1102 SYFLGIAVTRHAGGLFLSQSTYARDIIARAGMASCHPSATPVDTKQKLSTSAGTPCDDPT 1161
YFLGI + + GLFL Q YA DI+ +AGM C+P TP+ Q L P ++PT
Sbjct: 948 RYFLGIEIESYNNGLFLHQHAYASDILHQAGMTECNPMPTPL--PQHLEDLNSEPFEEPT 1005
Query: 1162 LYRSLVGALQYLTFTRPDISYAVQQVCLHMHAPRTEHMLALKRILRYVQGTLQLGLHLYP 1221
+RSL G LQYLT TRPDI YAV +C MHAP LKRILRYV+GT+ +GL +
Sbjct: 1006 YFRSLAGKLQYLTITRPDIQYAVNFICQRMHAPTNSDFGLLKRILRYVKGTINMGLPIRK 1065
Query: 1222 SPIEKLISYTDADWGGCLDTRRSTSGYCVFLGDNLISWSSKRQPTLSRSSAEAEYRGVAN 1281
L + D+D+ GC DTRRST+G+C+ LG LISWS+KRQPT+S SS EAEYR +++
Sbjct: 1066 HHNPVLSGFCDSDYAGCKDTRRSTTGFCILLGSTLISWSAKRQPTISHSSTEAEYRALSD 1125
Query: 1282 VVSESCWLRNLLLELHFPLS*ATLVYCDNVSAIYLSGNPVQHQRTKHIEMDIHFVREKVA 1341
E W+ +LL +L T V+CDN+SA+YLS NP H+R+KH + D H++RE+VA
Sbjct: 1126 TAREITWISSLLRDLGISQHQPTRVFCDNLSAVYLSANPALHKRSKHFDKDFHYIRERVA 1185
Query: 1342 RGQARVLHVPSRHQIADIFTKGLPRVLFDDFRSSLSV 1378
G H+P+ Q+AD+FTK LPR F R+ L V
Sbjct: 1186 LGLIETQHIPATIQLADVFTKSLPRRPFITLRAKLGV 1222
>gb|AAP53905.1| putative pol polyprotein [Oryza sativa (japonica cultivar-group)]
gi|37534632|ref|NP_921618.1| putative pol polyprotein
[Oryza sativa (japonica cultivar-group)]
Length = 1688
Score = 687 bits (1774), Expect = 0.0
Identities = 406/1033 (39%), Positives = 559/1033 (53%), Gaps = 78/1033 (7%)
Query: 400 SYKTKPLSLSHVLHTPQIVKNLISVRQLTTDNNVSVCFDPYGFSVIDFQTG--------- 450
S + ++ +V P++ NLISV QLT D N V FD V D TG
Sbjct: 228 SISSPQFTVPNVSLVPKLSMNLISVGQLT-DTNCFVGFDDTSCFVQDRHTGAVIGTGHRQ 286
Query: 451 -------------IPLMRCNSPGDLYPVTP----SFPFAGLAQSLWHSRLGHPSSSALQS 493
+P N+P P+ SFP WH RLGH S L +
Sbjct: 287 KRSCGLYILDSLSLPSSSTNTPSVYSPMCSTACKSFP-------QWHHRLGHLCGSRLAT 339
Query: 494 LRSNKFISYEHLNSSPVCESCVFGKHVRLPFVSSNNVTVMPFDILHSDLW-TSPVLSSAG 552
L + + ++++ VC+ C GK V+LP+ SS + + PFD++HSD+W SP S G
Sbjct: 340 LINQGVLGSVPVDTTFVCKGCKLGKQVQLPYPSSTSRSSRPFDLVHSDVWGKSPFPSKGG 399
Query: 553 HRFYVLFLDDFTDFLWTFPLSNKSQVFEMFISLSNQIRTHFSQTIKCLQCDNGREFDNKS 612
H +YV+F+DD++ + W + + ++SQ+ ++ S + I T FS I+ + D+G E+ + +
Sbjct: 400 HNYYVIFVDDYSRYTWIYFMKHRSQLISIYQSFAQMIHTQFSSAIRIFRSDSGGEYMSNA 459
Query: 613 FHDYCAANGLIFRFSCPHTSSQNGKAERKIRTINNMIRTLLAHASVPPSFWHHALQMATY 672
F ++ + G + + SCP +QNG AERK R I RTLL + VP FW A+ A Y
Sbjct: 460 FREFLVSQGTLPQLSCPGAHAQNGVAERKHRHIIETARTLLIASFVPAHFWAEAISTAVY 519
Query: 673 LLNIIPRKNLSNLSPTQLLYRRDPSYTHLRVFGCLCYPLVPSSTINKLQPRSTPCVFLGY 732
L+N+ P +L SP ++L+ P Y HLRVFGC CY L+ KL +S CVFLGY
Sbjct: 520 LINMQPSSSLQGRSPGEVLFGSPPRYDHLRVFGCTCYVLLAPRERTKLTAQSVECVFLGY 579
Query: 733 PLHHRGYKCFDLSHRKVIISRHVIFDETQFPFANLTPTPSSTYEWLSDDIHPSVIHRWTT 792
L H+GY+C+D S R++ ISR V FDE + F + T PSS +S P + +
Sbjct: 580 SLEHKGYRCYDPSARRIRISRDVTFDENKPFFYSSTNQPSSPENSISFLYLPPIPSPESL 639
Query: 793 Q----TPSPDLQPTPVAPSATATPPTSTASSSSPSDPSPSSSTPQSPPQPAPPVRTMATR 848
TPSP P P PS T PP + S SP P PS S P P T+ T
Sbjct: 640 PSSPITPSPSPIP-PSVPSPTYVPPPPPSPSPSPVSPPPSHIPASSSPPHVPSTITLDTF 698
Query: 849 SMRGIYKPRKLFNLSV----TIDDPTIS-----PLPK---NPKLALSDPN---------- 886
+P K+ N S T++DPT S P P+ + AL PN
Sbjct: 699 PFHYSRRP-KIPNESQPSQPTLEDPTCSVDDSSPAPRYNLRARDALRAPNRDDFVVGVVF 757
Query: 887 -------------WKSAMQSEFDALIRNNTWDLVPRPCDVNIIRCMWIFRHKTKANGCFE 933
WK AM E AL R NTWD+VP P I C W+++ KTK++G E
Sbjct: 758 EPSTYQEAIVLPHWKLAMSEELAALERTNTWDVVPLPSHAVPITCKWVYKVKTKSDGQVE 817
Query: 934 RYKARLVGDGRSQIAGVDCDETFSHVVKPATIRTVLTIALSRSWPIHQLDVQNAFLHGDL 993
RYKARLV G Q G D DETF+ V T+RT++ +A +RSW I Q+DV+NAFLHGDL
Sbjct: 818 RYKARLVARGFQQAHGRDYDETFAPVAHMTTVRTLIAVAATRSWTISQMDVKNAFLHGDL 877
Query: 994 HETVYMHQPLGFRDPNHPDYVCRLRKSLYGLKQAPRAWYQCFADYVSTIGFQHSTSDHSL 1053
HE VYMH P G P P +V RLR++LYGLKQAPRAW+ F+ V GF S D +L
Sbjct: 878 HEEVYMHPPPGVEAP--PGHVFRLRRALYGLKQAPRAWFARFSSVVLAAGFSPSDHDPAL 935
Query: 1054 FIYRRGSDMAYLLLYVDDIILISSSHDLRKSIMALLASEFAMKDLGPLSYFLGIAVTRHA 1113
FI+ LLLYVDD+++ + + L+ +F M DLGPLSYFLGI VT
Sbjct: 936 FIHTSSRGRTLLLLYVDDMLITGDDLEYIAFVKGKLSEQFMMSDLGPLSYFLGIEVTSTV 995
Query: 1114 GGLFLSQSTYARDIIARAGMASCHPSATPVDTKQKLSTSAGTPCDDPTLYRSLVGALQYL 1173
G +LSQ Y D++A++G+ + TP++ +L ++ GTP DDP+ YR LVG+L YL
Sbjct: 996 DGYYLSQHRYIEDLLAQSGLTDSRTTTTPMELHVRLRSTDGTPLDDPSRYRHLVGSLVYL 1055
Query: 1174 TFTRPDISYAVQQVCLHMHAPRTEHMLALKRILRYVQGTLQLGLHLYPSPIEKLISYTDA 1233
T TRPDI+YAV + + AP + H L R+LRY++GT L S +L +++D+
Sbjct: 1056 TVTRPDIAYAVHILSQFVSAPISVHYGHLLRVLRYLRGTTTQCLFYAASSPLQLRAFSDS 1115
Query: 1234 DWGGCLDTRRSTSGYCVFLGDNLISWSSKRQPTLSRSSAEAEYRGVANVVSESCWLRNLL 1293
W RRS +GYC+FLG +L++W SK+Q +SRSS EAE R +A SE WLR LL
Sbjct: 1116 TWASDPIDRRSVTGYCIFLGTSLLTWKSKKQTAVSRSSTEAELRALATTTSEIVWLRWLL 1175
Query: 1294 LELHFPLS*ATLVYCDNVSAIYLSGNPVQHQRTKHIEMDIHFVREKVARGQARVLHVPSR 1353
+ T + CDN AI ++ +P++H+ TKHI +D F R + + +VPS
Sbjct: 1176 ADFGVSCDVPTPLLCDNTGAIQIANDPIKHELTKHIGVDASFTRSHCQQSTIALHYVPSE 1235
Query: 1354 HQIADIFTKGLPR 1366
Q+AD FTK R
Sbjct: 1236 LQVADFFTKAQTR 1248
>emb|CAC95126.1| gag-pol polyprotein [Populus deltoides]
Length = 1382
Score = 645 bits (1664), Expect = 0.0
Identities = 402/1018 (39%), Positives = 548/1018 (53%), Gaps = 35/1018 (3%)
Query: 365 NLTSYSNLSHLNQKLYVGSGQGIPIQGSGHTTLLTSYKTKPLSLSHVLHTPQIVKNLISV 424
+ TS S LS + + G +P+ G G S T LSL +V P++ NL S+
Sbjct: 358 SFTSVSPLSSI--PVMTADGTPMPLAGVG------SVVTLHLSLPNVYLIPKLKLNLASI 409
Query: 425 RQLTTDNNVSVCFDPYGFSVIDFQTGIPLMRCNSPGDLY-------PV-----TPSFPFA 472
Q+ + V F V D Q+ + LY PV T F
Sbjct: 410 GQICDSGDYLVMFSGSFCCVQDLQSQKLIGTGRRENGLYILDELKVPVVVAATTVDLSFF 469
Query: 473 GLAQS-----LWHSRLGHPSSSALQSLRSNKFISYEHLNSSPVCESCVFGKHVRLPFVSS 527
L+ S LWHSRLGH SSS L+ L S + C C K LPF S
Sbjct: 470 RLSLSSSSFYLWHSRLGHVSSSRLRFLASTGALGNLKTCDISDCSGCKLAKFSALPFNRS 529
Query: 528 NNVTVMPFDILHSDLW-TSPVLSSAGHRFYVLFLDDFTDFLWTFPLSNKSQVFEMFISLS 586
+V+ PFD++HSD+W SPV + G R+YV F+DD T + W + + ++S+ FE++ +
Sbjct: 530 TSVSSSPFDLIHSDVWGPSPVSTKGGSRYYVSFIDDHTRYCWVYLMKHRSEFFEIYAAFR 589
Query: 587 NQIRTHFSQTIKCLQCDNGREFDNKSFHDYCAANGLIFRFSCPHTSSQNGKAERKIRTIN 646
I+T S IKC +CD G E+ + F A +G I + SC T QNG AERK R I
Sbjct: 590 ALIKTQHSAVIKCFRCDLGGEYTSNKFCQMLALDGTIHQTSCTDTPEQNGVAERKHRHIV 649
Query: 647 NMIRTLLAHASVPPSFWHHALQMATYLLNIIPRKNLSNLSPTQLLYRRDPSYTHLRVFGC 706
R+LL A V FW A+ A L+N IP + S LSP + LY P Y+ RVFGC
Sbjct: 650 ETARSLLLSAFVLSEFWGEAVLTAVSLINTIPSSHSSGLSPFEKLYGHVPDYSSFRVFGC 709
Query: 707 LCYPLVPSSTINKLQPRSTPCVFLGYPLHHRGYKCFDLSHRKVIISRHVIFDETQFPFAN 766
+ L P NKL RS CVFLGY +GY+CFD +K+ +S HV+F E PF +
Sbjct: 710 TYFVLHPHVERNKLSSRSAICVFLGYGEGKKGYRCFDPITQKLYVSHHVVFLE-HIPFFS 768
Query: 767 LTPTPSSTYEWLSDDIHPSVIHRWTTQTPSPDLQPTPVAPSATATPPTSTASSSSPSDPS 826
+ T S + SD IH + SP ++ SA S +S S +
Sbjct: 769 IPSTTHSLTK--SDLIHIDPFSEDSGNDTSPYVRSICTHNSAGTGTLLSGTPEASFSSTA 826
Query: 827 PSSSTPQSPPQPAPPVRTMATRSMRGIYKPRKLFNLSVTIDDPTISPL--PKNPKLALSD 884
P +S+ P P +R + + ++ S T I L P + K A+ D
Sbjct: 827 PQASSEIVDPPPRQSIRIRKSTKLPDF--AYSCYSSSFTSFLAYIHCLFEPSSYKEAILD 884
Query: 885 PNWKSAMQSEFDALIRNNTWDLVPRPCDVNIIRCMWIFRHKTKANGCFERYKARLVGDGR 944
P + AM E AL + +TWDLVP P +++ C W+++ KT ++G ERYKARLV G
Sbjct: 885 PLGQQAMDEELSALHKTDTWDLVPLPPGKSVVGCRWVYKIKTNSDGSIERYKARLVAKGY 944
Query: 945 SQIAGVDCDETFSHVVKPATIRTVLTIALSRSWPIHQLDVQNAFLHGDLHETVYMHQPLG 1004
SQ G+D +ETF+ + K TIRT++ +A R W I QLDV+NAFL+GDL E VYM P G
Sbjct: 945 SQQYGMDYEETFAPIAKMTTIRTLIAVASIRQWHISQLDVKNAFLNGDLQEEVYMAPPPG 1004
Query: 1005 FRDPNHPDYVCRLRKSLYGLKQAPRAWYQCFADYVSTIGFQHSTSDHSLFIYRRGSDMAY 1064
+ YVC+L+K+LYGLKQAPRAW++ F+ +S++GF S+ D +LFI +
Sbjct: 1005 ISHDS--GYVCKLKKALYGLKQAPRAWFEKFSIVISSLGFVSSSHDSALFIKCTDAGRII 1062
Query: 1065 LLLYVDDIILISSSHDLRKSIMALLASEFAMKDLGPLSYFLGIAVTRHAGGLFLSQSTYA 1124
L LYVDD+I+ D + LA F MKDLG L YFLGI V G LSQS Y
Sbjct: 1063 LSLYVDDMIITGDDIDGISVLKTELARRFEMKDLGYLRYFLGIEVAYSPRGYLLSQSKYV 1122
Query: 1125 RDIIARAGMASCHPSATPVDTKQKLSTSAGTPCDDPTLYRSLVGALQYLTFTRPDISYAV 1184
+I+ RA + TP++ + S+S G P DPTLYR++VG+L YLT T PDI+YAV
Sbjct: 1123 ANILERARLTDNKTVDTPIEVNARYSSSDGLPLIDPTLYRTIVGSLVYLTITHPDIAYAV 1182
Query: 1185 QQVCLHMHAPRTEHMLALKRILRYVQGTLQLGLHLYPSPIEKLISYTDADWGGCLDTRRS 1244
V + +P T H A+ RILRY++GT+ L L + +L +Y+DAD G R+S
Sbjct: 1183 HVVSQFVASPTTIHWAAVLRILRYLRGTVFQSLLLSSTSSLELRAYSDADHGSDPTDRKS 1242
Query: 1245 TSGYCVFLGDNLISWSSKRQPTLSRSSAEAEYRGVANVVSESCWLRNLLLELHFPLS*AT 1304
+G+C+FLGD+LISW SK+Q +S+SS EAEY +A+ E W R LL ++ S T
Sbjct: 1243 VTGFCIFLGDSLISWKSKKQSIVSQSSTEAEYCAMASTTKEIVWSRWLLADMGISFSHLT 1302
Query: 1305 LVYCDNVSAIYLSGNPVQHQRTKHIEMDIHFVREKVARGQARVLHVPSRHQIADIFTK 1362
+YCDN S+I ++ N V H+RTKHIE+D H R + G + VPS QIAD FTK
Sbjct: 1303 PMYCDNQSSIQIAHNSVFHERTKHIEIDCHLTRHHLKHGTIALPFVPSSLQIADFFTK 1360
>emb|CAE04646.2| OSJNBa0061G20.2 [Oryza sativa (japonica cultivar-group)]
gi|50923461|ref|XP_472091.1| OSJNBa0061G20.2 [Oryza
sativa (japonica cultivar-group)]
Length = 542
Score = 642 bits (1655), Expect = 0.0
Identities = 322/534 (60%), Positives = 385/534 (71%), Gaps = 5/534 (0%)
Query: 845 MATRSMRGIYKPRKLFNLSVTIDDPTISPLPKNPKLALSDPNWKSAMQSEFDALIRNNTW 904
M TR GI +P + T DD +P + L DP W +AMQ E+ AL N TW
Sbjct: 1 MVTRWKAGIVQPNPRYAHLATADD-----VPTTVRAVLRDPAWFAAMQDEYRALQDNGTW 55
Query: 905 DLVPRPCDVNIIRCMWIFRHKTKANGCFERYKARLVGDGRSQIAGVDCDETFSHVVKPAT 964
LVPRP ++I WIF++K A+G ER KAR V G +Q G+D D+TFS VVKPAT
Sbjct: 56 ALVPRPRGAHVITGKWIFKNKFHADGTLERRKARWVARGFTQRPGLDFDKTFSPVVKPAT 115
Query: 965 IRTVLTIALSRSWPIHQLDVQNAFLHGDLHETVYMHQPLGFRDPNHPDYVCRLRKSLYGL 1024
IRTVL +A R WP+HQLDV+NAFLHGDL E Y HQP GF DP+ PD VC LRKSLYGL
Sbjct: 116 IRTVLHLAAMRDWPVHQLDVKNAFLHGDLTEHFYCHQPAGFVDPSQPDAVCLLRKSLYGL 175
Query: 1025 KQAPRAWYQCFADYVSTIGFQHSTSDHSLFIYRRGSDMAYLLLYVDDIILISSSHDLRKS 1084
KQAPRAW+Q F ++ +GF S SD+SLF+ RRG+D A+LLLYVDDI+L +SS L +
Sbjct: 176 KQAPRAWFQRFGTHLHHLGFVSSKSDNSLFVLRRGTDEAHLLLYVDDIVLAASSQRLLQH 235
Query: 1085 IMALLASEFAMKDLGPLSYFLGIAVTRHAGGLFLSQSTYARDIIARAGMASCHPSATPVD 1144
I+ L EFAMKDLGP+ +FLGI V R A G FLSQ YA D++ RAG+A C P+ TP+D
Sbjct: 236 IINQLRVEFAMKDLGPVHFFLGIQVRRTADGFFLSQEQYAGDVLDRAGLADCKPAPTPID 295
Query: 1145 TKQKLSTSAGTPCDDPTLYRSLVGALQYLTFTRPDISYAVQQVCLHMHAPRTEHMLALKR 1204
TK K+S++ G P DPT YRS+VGALQYLT TRPD+SYAVQQVCLHMH+PR H +KR
Sbjct: 296 TKAKVSSTTGQPYSDPTFYRSIVGALQYLTLTRPDLSYAVQQVCLHMHSPRDVHWTLVKR 355
Query: 1205 ILRYVQGTLQLGLHLYPSPIEKLISYTDADWGGCLDTRRSTSGYCVFLGDNLISWSSKRQ 1264
ILRYV+GT GL L S L +Y+D DW GC DTRRSTSG+CVF GD+ SWSSKRQ
Sbjct: 356 ILRYVRGTTHKGLQLRRSSTPSLTAYSDVDWAGCPDTRRSTSGFCVFFGDSSESWSSKRQ 415
Query: 1265 PTLSRSSAEAEYRGVANVVSESCWLRNLLLELHFPLS*ATLVYCDNVSAIYLSGNPVQHQ 1324
+SRSSAEAEYRGVAN +E CWLR+LL ELH L ATLVYCDN+SA+YLS NP+ H
Sbjct: 416 SVVSRSSAEAEYRGVANAAAECCWLRHLLGELHVKLDKATLVYCDNISAVYLSKNPLHHG 475
Query: 1325 RTKHIEMDIHFVREKVARGQARVLHVPSRHQIADIFTKGLPRVLFDDFRSSLSV 1378
R KH+E+D+HFVREKVA G RV H+P+R Q+ADI TK LP LF+DFRSSL +
Sbjct: 476 RAKHVELDVHFVREKVAVGDIRVAHIPTRQQLADIMTKRLPTALFEDFRSSLCI 529
>gb|AAT40550.1| putative receptor kinase [Solanum demissum]
Length = 1358
Score = 617 bits (1590), Expect = e-174
Identities = 389/1020 (38%), Positives = 527/1020 (51%), Gaps = 73/1020 (7%)
Query: 371 NLSHLNQKLYVGSGQGIPIQGSGHTTLLTSYKTKPLS---LSHVLHTPQIVKNLISVRQL 427
N S L+ +Y S I + T K KPLS L VL+ P NL SV +L
Sbjct: 373 NKSLLSDIVYSQSLPAITLANGIQTKPKGVGKAKPLSSVTLDSVLYVPGSPFNLASVSRL 432
Query: 428 TTDNNVSVCFDPYGFSVIDFQTGIPLMRCNSPGDLYPVTPSFPFAGLA----QSLWHSRL 483
T + S+ F F + D TG + + LY +T S A + L H RL
Sbjct: 433 TKALHCSITFFDDFFLMQDRSTGQMIGTGHESQGLYYLTSSNSLAACSITDSPDLIHKRL 492
Query: 484 GHPSSSALQSLRSNKFISYEHLNSSPVCESCVFGKHVRLPFV-SSNNVTVMPFDILHSDL 542
GH S S LQ K + S+ CESC GKH R F S+ + F ++HSD+
Sbjct: 493 GHSSLSKLQ-----KMVPSLSSLSTLDCESCQLGKHTRATFSRSTEGRSESIFSLVHSDI 547
Query: 543 W-TSPVLSSAGHRFYVLFLDDFTDFLWTFPLSNKSQVFEMFISLSNQIRTHFSQTIKCLQ 601
W S V S+ G R++V F+DD++ W F + ++S++F +F S +I+ F +I+ +
Sbjct: 548 WGPSRVSSTLGFRYFVSFIDDYSKCTWVFLMKDRSELFSIFKSFFAEIQNQFGVSIRTFR 607
Query: 602 CDNGREFDNKSFHDYCAANGLIFRFSCPHTSSQNGKAERKIRTINNMIRTLLAHASVPPS 661
DN E+ + F ++ G+I + +CP+T QNG AERK R + RTLL ++VP
Sbjct: 608 SDNALEYLSSQFREFMTHQGIIHQTTCPYTPQQNGVAERKNRHLIETARTLLLESNVPLR 667
Query: 662 FWHHALQMATYLLNIIPRKNLSNLSPTQLLYRRDPSYT-HLRVFGCLCYPLVPSSTINKL 720
FW A+ + YL+N +P ++ N P +L+ + Y RVFG C+ + +KL
Sbjct: 668 FWGDAVLTSCYLINRMPSSSIQNQVPHSILFPQSHLYPIPPRVFGSTCFVHNLAPGKDKL 727
Query: 721 QPRSTPCVFLGYPLHHRGYKCFDLSHRKVIISRHVIFDETQFPFANLTPTPSSTYEWLSD 780
PR+ CVFLGY +GY+C+ + ++S V F E+Q + +
Sbjct: 728 APRALKCVFLGYSRVQKGYRCYSHDLHRYLMSADVTFFESQ--------------PYYTS 773
Query: 781 DIHPSVIHRWTTQTPSPDLQPTPVAPSATAT-------PPTSTASSSSPSDPSPSSSTPQ 833
HP V + P P + P P +T T PP T P S
Sbjct: 774 SNHPDV----SMVLPIPQVLPVPTFVESTVTSTSPVVVPPLLTYHRRPRPTLVPDDSC-- 827
Query: 834 SPPQPAPPVRTMATRSMRGIYKPRKLFNLSVTIDDPTIS-PLPKNPKLALSDPNWKSAMQ 892
P PAP T D P S PL ALS W+ AM
Sbjct: 828 HAPDPAP------------------------TADLPPPSQPLALQKGEALSHSGWRQAMV 863
Query: 893 SEFDALIRNNTWDLVPRPCDVNIIRCMWIFRHKTKANGCFERYKARLVGDGRSQIAGVDC 952
E AL ++ TW+LV P + + C W++ K +G +R KARLV G +QI G+D
Sbjct: 864 DEMSALHKSGTWELVSLPAGKSTVGCRWVYAVKIGPDGQVDRLKARLVAKGYTQIFGLDY 923
Query: 953 DETFSHVVKPATIRTVLTIALSRSWPIHQLDVQNAFLHGDLHETVYMHQPLGF-RDPNHP 1011
+TF+ V K A++R L++A R WP+HQLD++NAFLHGDL E VYM QP GF
Sbjct: 924 SDTFAPVAKIASVRLFLSMAAVRHWPLHQLDIKNAFLHGDLEEEVYMEQPPGFVAQGESS 983
Query: 1012 DYVCRLRKSLYGLKQAPRAWYQCFADYVSTIGFQHSTSDHSLFIYRRG--SDMAYLLLYV 1069
VCRLR+SLYGLKQ+PRAW+ F+ + G S +DHS+F YR S YL++YV
Sbjct: 984 SLVCRLRRSLYGLKQSPRAWFGKFSTVIQEFGMTRSGADHSVF-YRHSAPSRCIYLVVYV 1042
Query: 1070 DDIILISSSHDLRKSIMALLASEFAMKDLGPLSYFLGIAVTRHAGGLFLSQSTYARDIIA 1129
DDI++ + D + L F KDLG L YFLGI V + G+ +SQ YA DI+
Sbjct: 1043 DDIVITGNDQDGITDLKQHLFKHFQTKDLGRLKYFLGIEVAQSRSGIVISQRKYALDILE 1102
Query: 1130 RAGMASCHPSATPVDTKQKLSTSAGTPCDDPTLYRSLVGALQYLTFTRPDISYAVQQVCL 1189
GM C P TP+D KL G P +P YR LVG L YLT TRPDIS+ V V
Sbjct: 1103 ETGMMGCRPVDTPMDPNVKLLPGQGEPLSNPERYRRLVGKLNYLTVTRPDISFPVSVVSQ 1162
Query: 1190 HMHAPRTEHMLALKRILRYVQGTLQLGLHLYPSPIEKLISYTDADWGGCLDTRRSTSGYC 1249
M +P H A+ RILRY++ GL E +I YTDADW G RRSTSGYC
Sbjct: 1163 FMTSPCDSHWEAVVRILRYIKSAPGKGLLFEDQGHEHIIGYTDADWAGSPSDRRSTSGYC 1222
Query: 1250 VFLGDNLISWSSKRQPTLSRSSAEAEYRGVANVVSESCWLRNLLLELHFPLS*ATLVYCD 1309
V +G NL+SW SK+Q ++RSSAE+EYR +A E W++ LL EL F + CD
Sbjct: 1223 VLVGGNLVSWKSKKQNVVARSSAESEYRAMATATCELVWIKQLLGELKFGKVDKMELVCD 1282
Query: 1310 NVSAIYLSGNPVQHQRTKHIEMDIHFVREKVARGQARVLHVPSRHQIADIFTKGL--PRV 1367
N +A++++ NPV H+RTKHIE+D HFVREK+ G V S Q+ADIFTK L PR+
Sbjct: 1283 NQAALHIASNPVFHERTKHIEIDCHFVREKILSGDIVTKFVKSNDQLADIFTKSLTCPRI 1342
>gb|AAB61111.1| Strong similarity to Zea mays retrotransposon Hopscotch polyprotein
(gb|U12626). [Arabidopsis thaliana]
gi|25301690|pir||G96722 hypothetical protein F20P5.25
[imported] - Arabidopsis thaliana
Length = 1315
Score = 614 bits (1583), Expect = e-174
Identities = 367/1016 (36%), Positives = 533/1016 (52%), Gaps = 72/1016 (7%)
Query: 388 PIQGSGHTTLLTSYKTKPLSLSHVLHTPQIVKNLISVRQLTTDNNVSVCFDPYGFSVIDF 447
PI GS H + L L+ VL PQ NL+SV LT + FD + D
Sbjct: 312 PISGSVHLG-------RHLILNDVLFIPQFKFNLLSVSSLTKSMGCRIWFDETSCVLQDA 364
Query: 448 QTGIPLMRCNSPGDLYPVT----------PSFPFAGL-AQSLWHSRLGHPSSSALQSLRS 496
+ + +LY V S A + + LWH RLGHPS LQ + S
Sbjct: 365 TRELMVGMGKQVANLYIVDLDSLSHPGTDSSITVASVTSHDLWHKRLGHPSVQKLQPMSS 424
Query: 497 NKFISYEHLNSSPVCESCVFGKHVRLPFVSSNNVTVMPFDILHSDLWTS-PVLSSAGHRF 555
+ N+ C C K LPFVS NN + PFD++H D W V + G+R+
Sbjct: 425 LLSFPKQKNNTDFHCRVCHISKQKHLPFVSHNNKSSRPFDLIHIDTWGPFSVQTHDGYRY 484
Query: 556 YVLFLDDFTDFLWTFPLSNKSQVFEMFISLSNQIRTHFSQTIKCLQCDNGREFDNKSFHD 615
++ +DD++ W + L NKS V + + + F TIK ++ DN E + F+
Sbjct: 485 FLTIVDDYSRATWVYLLRNKSDVLTVIPTFVTMVENQFETTIKGVRSDNAPELNFTQFYH 544
Query: 616 YCAANGLIFRFSCPHTSSQNGKAERKIRTINNMIRTLLAHASVPPSFWHHALQMATYLLN 675
+ G++ SCP T QN ERK + I N+ R+L + +P S+W + A YL+N
Sbjct: 545 ---SKGIVPYHSCPETPQQNSVVERKHQHILNVARSLFFQSHIPISYWGDCILTAVYLIN 601
Query: 676 IIPRKNLSNLSPTQLLYRRDPSYTHLRVFGCLCYPLVPSSTINKLQPRSTPCVFLGYPLH 735
+P L + P ++L + P+Y H++VFGCLCY +K PR+ C F+GYP
Sbjct: 602 RLPAPILEDKCPFEVLTKTVPTYDHIKVFGCLCYASTSPKDRHKFSPRAKACAFIGYPSG 661
Query: 736 HRGYKCFDLSHRKVIISRHVIFDETQFPFANLTPTPSSTYEWLSDDIHPSVIHRWTTQTP 795
+GYK DL +I+SRHV+F E FPF L D+ Q
Sbjct: 662 FKGYKLLDLETHSIIVSRHVVFHEELFPF-------------LGSDLSQE------EQNF 702
Query: 796 SPDLQPTPVAPSATATPPTSTASSSSPSDPSPSSSTPQSPPQPAPPVRTMATRSMRGIY- 854
PDL PTP ++ + + SSS + PS++ + P+P+ V+T ++ + Y
Sbjct: 703 FPDLNPTPPM-QRQSSDHVNPSDSSSSVEILPSANPTNNVPEPS--VQTSHRKAKKPAYL 759
Query: 855 --------------KPRKLFNLSVTIDDPTISPL--------PKNPKLALSDPNWKSAMQ 892
+ RK + I+DP ++ L P N A W+ AM
Sbjct: 760 QDYYCHSVVSSTPHEIRKFLSYD-RINDPYLTFLACLDKTKEPSNYTEAEKLQVWRDAMG 818
Query: 893 SEFDALIRNNTWDLVPRPCDVNIIRCMWIFRHKTKANGCFERYKARLVGDGRSQIAGVDC 952
+EFD L +TW++ P D I C WIF+ K ++G ERYKARLV G +Q G+D
Sbjct: 819 AEFDFLEGTHTWEVCSLPADKRCIGCRWIFKIKYNSDGSVERYKARLVAQGYTQKEGIDY 878
Query: 953 DETFSHVVKPATIRTVLTIALSRSWPIHQLDVQNAFLHGDLHETVYMHQPLGFR----DP 1008
+ETFS V K +++ +L +A + QLD+ NAFL+GDL E +YM P G+ D
Sbjct: 879 NETFSPVAKLNSVKLLLGVAARFKLSLTQLDISNAFLNGDLDEEIYMRLPQGYASRQGDS 938
Query: 1009 NHPDYVCRLRKSLYGLKQAPRAWYQCFADYVSTIGFQHSTSDHSLFIYRRGSDMAYLLLY 1068
P+ VCRL+KSLYGLKQA R WY F+ + +GF S DH+ F+ +L+Y
Sbjct: 939 LPPNAVCRLKKSLYGLKQASRQWYLKFSSTLLGLGFIQSYCDHTCFLKISDGIFLCVLVY 998
Query: 1069 VDDIILISSSHDLRKSIMALLASEFAMKDLGPLSYFLGIAVTRHAGGLFLSQSTYARDII 1128
+DDII+ S++ + + + S F ++DLG L YFLG+ + R G+ +SQ YA D++
Sbjct: 999 IDDIIIASNNDAAVDILKSQMKSFFKLRDLGELKYFLGLEIVRSDKGIHISQRKYALDLL 1058
Query: 1129 ARAGMASCHPSATPVDTKQKLSTSAGTPCDDPTLYRSLVGALQYLTFTRPDISYAVQQVC 1188
G C PS+ P+D + +G + YR L+G L YL TRPDI++AV ++
Sbjct: 1059 DETGQLGCKPSSIPMDPSMVFAHDSGGDFVEVGPYRRLIGRLMYLNITRPDITFAVNKLA 1118
Query: 1189 LHMHAPRTEHMLALKRILRYVQGTLQLGLHLYPSPIEKLISYTDADWGGCLDTRRSTSGY 1248
APR H+ A+ +IL+Y++GT+ GL + +L Y +AD+ C D+RRSTSGY
Sbjct: 1119 QFSMAPRKAHLQAVYKILQYIKGTIGQGLFYSATSELQLKVYANADYNSCRDSRRSTSGY 1178
Query: 1249 CVFLGDNLISWSSKRQPTLSRSSAEAEYRGVANVVSESCWLRNLLLELHFPLS*ATLVYC 1308
C+FLGD+LI W S++Q +S+SSAEAEYR ++ E WL N L EL PLS TL++C
Sbjct: 1179 CMFLGDSLICWKSRKQDVVSKSSAEAEYRSLSVATDELVWLTNFLKELQVPLSKPTLLFC 1238
Query: 1309 DNVSAIYLSGNPVQHQRTKHIEMDIHFVREKVARGQARVLHVPSRHQIADIFTKGL 1364
DN +AI+++ N V H+RTKHIE D H VRE++ +G + H+ + QIAD FTK L
Sbjct: 1239 DNEAAIHIANNHVFHERTKHIESDCHSVRERLLKGLFELYHINTELQIADPFTKPL 1294
>gb|AAP46257.1| putative polyprotein [Oryza sativa (japonica cultivar-group)]
gi|50919599|ref|XP_470160.1| putative polyprotein [Oryza
sativa (japonica cultivar-group)]
Length = 1335
Score = 613 bits (1580), Expect = e-173
Identities = 367/1027 (35%), Positives = 553/1027 (53%), Gaps = 63/1027 (6%)
Query: 373 SHLNQKLYVGSGQGIPIQGSGHTTLLTSYKTKPLSLSHVLHTPQIVKNLISVRQLTTDNN 432
S + K+++G+G +G G + T+ P + VL P + +NL+S+ QL ++
Sbjct: 348 SSYHAKIHMGNGSIAQSEGKGTVAVQTA--DGPKFIKDVLLVPDLKQNLLSIGQLL-EHG 404
Query: 433 VSVCFDPYGFSVIDFQTGIPLMRCNSPGD---LYPVTPSFPFAGLAQ----SLWHSRLGH 485
+V F+ + ++D + + + N + L + + A ++ LWH R+GH
Sbjct: 405 YAVYFEDFSCKILDRKNNRLVAKINMEKNRNFLLRMNHTTQMALRSEVDISDLWHKRMGH 464
Query: 486 PSSSALQSLRSNKFIS---YEHLNSSPVCESCVFGKHVRLPFVSSNNVTVM-PFDILHSD 541
+ AL+ LR+ + + L S P CE CVFGK +R F S P +++H+D
Sbjct: 465 LNYRALKLLRTKGMVQGLPFITLKSDP-CEGCVFGKQIRASFPHSGAWRASAPLELVHAD 523
Query: 542 LWTS-PVLSSAGHRFYVLFLDDFTDFLWTFPLSNKSQVFEMFISLSNQIRTHFSQTIKCL 600
+ P +S G+ +++ F+DD+T +W + L KS E+F + ++ IK L
Sbjct: 524 IVGKVPTISEGGNWYFITFIDDYTRMIWVYFLKEKSAALEIFKKFKAMVENQSNRKIKVL 583
Query: 601 QCDNGREFDNKSFHDYCAANGLIFRFSCPHTSSQNGKAERKIRTINNMIRTLLAHASVPP 660
+ D GRE+ +K F YC G+ + + +++ QNG AERK RTIN+M ++L +P
Sbjct: 584 RSDQGREYISKEFEKYCENAGIRRQLTAGYSAQQNGVAERKNRTINDMANSMLQDKGMPK 643
Query: 661 SFWHHALQMATYLLNIIPRKNLSNLSPTQLLYRRDPSYTHLRVFGCLCYPLVPSSTINKL 720
SFW A+ A Y+LN P K ++N +P + Y + P H+RVFGC+CY VP+ K
Sbjct: 644 SFWAEAVNTAVYILNRSPTKAVTNRTPFEAWYGKKPVIGHMRVFGCICYAQVPAQKRVKF 703
Query: 721 QPRSTPCVFLGYPLHHRGYKCFDLSHRKVIISRHVIFDETQFPFANLTPTPSSTYEWLSD 780
+S C+F+GY +GY+ ++L +K+IISR IFDE S+T+ W S
Sbjct: 704 DNKSDRCIFVGYADGIKGYRLYNLEKKKIIISRDAIFDE------------SATWNWKSP 751
Query: 781 DIHPSVIHRWTTQT-PSPDLQPTPVAPSATATPPTST--ASSSSPSDPSPSSSTPQSPPQ 837
+ + + TT T P + T T +P S+ +SSS+ SD SPSS S P+
Sbjct: 752 EASSTPLLPTTTITLGQPHMHGTHEVEDHTPSPQPSSPMSSSSASSDSSPSSEEQISTPE 811
Query: 838 PAPP-VRTM-----ATRSMRGIYKPRKLFNLSVTIDDPTISPLPKNPKLALSDPNWKSAM 891
AP VR+M +T RG + + N SV P++ + A NW AM
Sbjct: 812 SAPRRVRSMVELLESTSQQRGS-EQHEFCNYSVVE--------PQSFQEAEKHDNWIKAM 862
Query: 892 QSEFDALIRNNTWDLVPRPCDVNIIRCMWIFRHKTKANGCFERYKARLVGDGRSQIAGVD 951
+ E + +NNTW+LV RP D +I W+++ K +G ++YKARLV G Q G+D
Sbjct: 863 EDEIHMIEKNNTWELVDRPRDREVIGVKWVYKTKLNPDGSVQKYKARLVAKGFKQKPGID 922
Query: 952 CDETFSHVVKPATIRTVLTIALSRSWPIHQLDVQNAFLHGDLHETVYMHQPLGFRDPNHP 1011
ET++ V + TIRT++ +A + W I+QLDV++AFL+G L E +Y+ QP GF
Sbjct: 923 YYETYAPVARLETIRTIIALAAQKRWKIYQLDVKSAFLNGYLDEEIYVEQPEGFSVQGGE 982
Query: 1012 DYVCRLRKSLYGLKQAPRAWYQCFADYVSTIGFQHSTSDHSLFIYRRGSDMAYLLLYVDD 1071
+ V RL+K+LYGLKQAPRAWY Y GF S S+ +L++ + G+D+ + LYVDD
Sbjct: 983 NKVFRLKKALYGLKQAPRAWYSQIDKYFIQKGFAKSISEPTLYVNKTGTDILIVSLYVDD 1042
Query: 1072 IILISSSHDLRKSIMALLASEFAMKDLGPLSYFLGIAVTRHAGGLFLSQSTYARDIIARA 1131
+I +S + + + + M DLG L YFLG+ V + G+F+SQ YA +I+ +
Sbjct: 1043 LIYTGNSEKMMQDFKKDMMHTYEMSDLGLLHYFLGMEVHQSDEGIFISQRKYAENILKKF 1102
Query: 1132 GMASCHPSATPVDTKQKLSTSAGTPCDDPTLYRSLVGALQYLTFTRPDISYAVQQVCLHM 1191
M +C TP+ +K G DPT+YRSLVG+L YLT TRPDI +A + +M
Sbjct: 1103 KMDNCKSVTTPLLPNEKQKARDGADKADPTIYRSLVGSLLYLTATRPDIMFAASLLSRYM 1162
Query: 1192 HAPRTEHMLALKRILRYVQGTLQLGLHLYPSPIEKLISYTDADWGGCLDTRRSTSGYCVF 1251
+P + A KR+LRY++GT G+ P KLI YTD+DW GCLD +STSGY
Sbjct: 1163 SSPSQLNFTAAKRVLRYIKGTADYGIWYKPVKESKLIGYTDSDWAGCLDDMKSTSGYAFS 1222
Query: 1252 LGDNLISWSSKRQPTLSRSSAEAEYRGVANVVSESCWLRNLLLELHFPLS*ATLVYCDNV 1311
LG SAEAEY + VS+ WLR ++ +L T +YCD+
Sbjct: 1223 LG-----------------SAEAEYVAASKAVSQVVWLRRIMEDLGEKQYQPTTIYCDSK 1265
Query: 1312 SAIYLSGNPVQHQRTKHIEMDIHFVREKVARGQARVLHVPSRHQIADIFTKGLPRVLFDD 1371
SAI +S NPV H RTKHI + H++RE V R + ++ + Q+ADIFTK L + F
Sbjct: 1266 SAIAISENPVSHDRTKHIAIKYHYIREAVDRQEVKLEFCRTDEQLADIFTKALSKEKFVR 1325
Query: 1372 FRSSLSV 1378
R + V
Sbjct: 1326 DRELIGV 1332
>gb|AAU89728.1| putative retroelement pol polyprotein-like [Solanum tuberosum]
Length = 1476
Score = 610 bits (1574), Expect = e-173
Identities = 384/1045 (36%), Positives = 546/1045 (51%), Gaps = 87/1045 (8%)
Query: 370 SNLSHLNQKLYVGSGQGIPIQGSGHTTLLTSYKTKPLS----LSHVLHTPQIVKNLISVR 425
SN + LN L V + + +G + ++T + L+ + +VL P NL+SV
Sbjct: 430 SNTTLLNHGLSVSHPGKVQLP-TGDSAVVTHSGSSQLTGGDVVKNVLCVPTFQFNLLSVS 488
Query: 426 QLTTDNNVSVCFDPYGFSVIDFQTGIPLMRCNSPGDLYPVTPS----------FPFAGLA 475
+LT + N V F P F + D TG LY P G
Sbjct: 489 KLTKELNCCVIFFPDFFIIQDLFTGKVKEIGEEINGLYITRPHQHHDTSKKTLAAIKGCE 548
Query: 476 QS-LWHSRLGHPSSSALQSLRSNKFISYEHLNSSPVCESCVFGKHVRLPFVSSNNVTVMP 534
++ +WH RLGH S L+ ++ F S + L P C+ C + VRLPF S + +
Sbjct: 549 EAEMWHKRLGHIPMSVLRKIKM--FDSPQKL-VLPSCDVCPLARQVRLPFPISQSRSENC 605
Query: 535 FDILHSDLWTSPVLSSAGH---RFYVLFLDDFTDFLWTFPLSNKSQVFEMFISLSNQIRT 591
FD++H D+W +A H R+++ +DD + + W F + KS V + + I T
Sbjct: 606 FDLIHLDVWGP--YKAATHNKMRYFLTVVDDHSRWTWIFLMHLKSDVSTVLQNFILMIDT 663
Query: 592 HFSQTIKCLQCDNGREFDNKSFHDYCAANGLIFRFSCPHTSSQNGKAERKIRTINNMIRT 651
F Q IK + DNG EF N ++G++ + SCPHT QNG ER+ + I R
Sbjct: 664 QFGQKIKIFRSDNGTEFFNAQCDGLFKSHGIVHQSSCPHTPQQNGVVERRHKHILETARA 723
Query: 652 LLAHASVPPSFWHHALQMATYLLNIIPRKNLSNLSPTQLLYRRDPSYTHLRVFGCLCYP- 710
L +P FW + A +++N IP L N SP +L+Y+R P +++RV GCLC+
Sbjct: 724 LRFQGHLPIRFWGECVLSAVHIINRIPSSVLHNKSPFELMYKRSPDLSYMRVIGCLCHAT 783
Query: 711 -LVPSSTINKLQPRSTPCVFLGYPLHHRGYKCFDLSHRKVIISRHVIFDETQFPFAN--- 766
LV +ST +GYK +DL H+ +SR ++F+E FPF +
Sbjct: 784 NLVNTST-------------------QKGYKLYDLEHQHFFVSRDMVFNEAVFPFQSPAL 824
Query: 767 ---------LTPTPSSTYEWLSDDIHPSVIHRWTTQTPSPDLQPTPVAPSATATPPTSTA 817
L P S++ +D + P++I S ++ P PSA S
Sbjct: 825 ADPHDTPVFLASPPCSSHTEDADAVQPAII-------TSEEIIPVASPPSAV-----SDD 872
Query: 818 SSSSPSDPSPSSSTPQSPPQPAPPVRTMATRSMRGIYKPRKLFNLSVT-------IDDPT 870
P + S T + P + T +RS +Y + S I +
Sbjct: 873 HLHPPPERRRSYRTGKPPIWQKDFITTSTSRSNHCLYPISDNIDYSCLSSTYQCYIASSS 932
Query: 871 ISPLPKNPKLALSDPNWKSAMQSEFDALIRNNTWDLVPRPCDVNIIRCMWIFRHKTKANG 930
+ P+ A +D W AM+ E AL N TW++V P I C W+++ K KA+G
Sbjct: 933 VETEPQFYYQAANDCRWVHAMKEEIQALEDNKTWEVVSLPKGKKAIGCKWVYKIKYKASG 992
Query: 931 CFERYKARLVGDGRSQIAGVDCDETFSHVVKPATIRTVLTIALSRSWPIHQLDVQNAFLH 990
ER+KARLV G +Q G+D ETFS VVK T+RTVLT+A+S+ W I Q+DV NAFL
Sbjct: 993 EIERFKARLVAKGYNQKEGLDYQETFSPVVKMVTLRTVLTLAVSKGWDIQQMDVYNAFLQ 1052
Query: 991 GDLHETVYMHQPLGFR-DPNHPDYVCRLRKSLYGLKQAPRAWYQCFADYVSTIGFQHSTS 1049
GDL E VYM P GF+ D VCRL KSLYGLKQA R W + GFQ S
Sbjct: 1053 GDLIEEVYMQLPQGFQYDKTGDPKVCRLLKSLYGLKQASRQWNVKLTTALLAAGFQQSHL 1112
Query: 1050 DHSLFIYRRGSDMAYLLLYVDDIILISSSHDLRKSIMALLASEFAMKDLGPLSYFLGIAV 1109
D+SL + R + +L+YVDD+++ SS L +L + F +KDLG L YFLG+
Sbjct: 1113 DYSLMLKRTADGIVIVLIYVDDLLITGSSLQLIDDAKQVLKANFKIKDLGTLRYFLGMEF 1172
Query: 1110 TRHAGGLFLSQSTYARDIIARAGMASCHPSATPVDTKQKLST----------SAGTPCDD 1159
R+A G+ + Q YA ++I+ G+ PS TPV+ KL+T A + D
Sbjct: 1173 ARNASGMLMHQRKYALELISDLGLGGSKPSVTPVELHLKLTTREFDLHVGSSGADSLLAD 1232
Query: 1160 PTLYRSLVGALQYLTFTRPDISYAVQQVCLHMHAPRTEHMLALKRILRYVQGTLQLGLHL 1219
PT Y+ LVG L YLT TRPDIS+AVQ + MHAP+ HM A R+++YV+ LGL++
Sbjct: 1233 PTEYQRLVGRLLYLTITRPDISFAVQHLSQFMHAPKVSHMEAAIRVVKYVKQAPGLGLYM 1292
Query: 1220 YPSPIEKLISYTDADWGGCLDTRRSTSGYCVFLGDNLISWSSKRQPTLSRSSAEAEYRGV 1279
+ L +Y DADWG C++TR+S +GY + G L+SW SK+QPT+SRSSAEAEYR +
Sbjct: 1293 AVQTADTLQAYCDADWGSCINTRKSITGYMIQFGSALLSWKSKKQPTISRSSAEAEYRSL 1352
Query: 1280 ANVVSESCWLRNLLLELHFPLS*ATLVYCDNVSAIYLSGNPVQHQRTKHIEMDIHFVREK 1339
A+ V+E WL L EL PLS +YCD+ +AI ++ NPV H+RTKHI++D HF+REK
Sbjct: 1353 ASTVAELVWLTGLFKELDMPLSLPVSLYCDSKAAIQIAANPVFHERTKHIDIDCHFIREK 1412
Query: 1340 VARGQARVLHVPSRHQIADIFTKGL 1364
V G + ++P++ Q ADI TKGL
Sbjct: 1413 VQAGLVMIHYLPTQEQPADILTKGL 1437
>gb|AAT38758.1| putative gag-pol polyprotein [Solanum demissum]
Length = 1333
Score = 599 bits (1545), Expect = e-169
Identities = 361/1014 (35%), Positives = 546/1014 (53%), Gaps = 47/1014 (4%)
Query: 381 VGSGQGIPIQGSGHTTLLTSYKTKPLSLSHVLHTPQIVKNLISVRQLTTDNNVSVCFDPY 440
+G + + I+G G T + + + L V + P + NL+SV QL T + SV F
Sbjct: 341 LGDDKQVHIEGKG-TVEIKTVQGNVKFLYDVQYVPTLAHNLLSVGQLMT-SGYSVVFYDN 398
Query: 441 GFSVIDFQTGIPLMRCN-SPGDLYPVTPSFPFAGLA-------QSLWHSRLGHPSSSALQ 492
+ D ++G + R + ++P+ S +LWH R GH + + L+
Sbjct: 399 ACDIKDKESGRTIARVPMTQNKMFPLDISNVGNSALVVKEKNETNLWHLRYGHLNVNWLK 458
Query: 493 SL-RSNKFISYEHLNSSPVCESCVFGKHVRLPF-VSSNNVTVMPFDILHSDLWTSPVLSS 550
L + + I ++ +CE C++GK R F V + +++H+DL + S
Sbjct: 459 LLVQKDMVIGLPNIKELDLCEGCIYGKQTRKSFPVGKSWRATTCLELVHADLCGPMKMES 518
Query: 551 -AGHRFYVLFLDDFTDFLWTFPLSNKSQVFEMFISLSNQIRTHFSQTIKCLQCDNGREFD 609
G R++++F DD++ F W + L KS+ FE F + IK L+ D G EF
Sbjct: 519 LGGSRYFLMFTDDYSRFSWVYFLKFKSETFETFKKFKAFVENQSGNKIKSLRTDRGGEFL 578
Query: 610 NKSFHDYCAANGLIFRFSCPHTSSQNGKAERKIRTINNMIRTLLAHASVPPSFWHHALQM 669
+ F+ +C NG+ + P+T QNG AERK RT+ M R+ L +P FW A+
Sbjct: 579 SNDFNLFCEENGIRRELTAPYTPEQNGVAERKNRTVVEMARSSLKAKGLPDYFWGEAVAT 638
Query: 670 ATYLLNIIPRKNLSNLSPTQLLYRRDPSYTHLRVFGCLCYPLVPSSTINKLQPRSTPCVF 729
Y LNI P K++ N +P + + P +HLR+FGC+ Y LV + +KL +ST C+F
Sbjct: 639 VVYFLNISPTKDVWNTTPLEAWNGKKPRVSHLRIFGCIAYALV--NFHSKLDEKSTKCIF 696
Query: 730 LGYPLHHRGYKCFDLSHRKVIISRHVIFDET---QFPFANLTPTPSSTYEWLSDDIHPSV 786
+GY L + Y+ ++ KVIISR+V+F+E F N+ S + L D +V
Sbjct: 697 VGYSLQSKAYRLYNPISGKVIISRNVVFNEDVSWNFNSGNMM----SNIQLLPTDEESAV 752
Query: 787 IHRWTTQTPSPDLQPTPVAPSATATPPTSTASSSSPSDPSP-SSSTPQSPPQPAPPVRTM 845
SP+ P + S+ P T+ A S +P P ST + P P T+
Sbjct: 753 DFG-----NSPNSSPVSSSVSSPIAPSTTVAPDESSVEPIPLRRSTREKKPNPKYS-NTV 806
Query: 846 ATRSMRGIYKPRKLFNLSVTIDDPTISPLPKNPKLALSDPNWKSAMQSEFDALIRNNTWD 905
T ++ + DP + A+ WK+AM E A+ RN+TW+
Sbjct: 807 NTSCQ-----------FALLVSDPICY------EEAVEQSEWKNAMIEEIQAIERNSTWE 849
Query: 906 LVPRPCDVNIIRCMWIFRHKTKANGCFERYKARLVGDGRSQIAGVDCDETFSHVVKPATI 965
LV P N+I W+FR K A+G +++KARLV G SQ GVD DETFS V + T+
Sbjct: 850 LVDAPEGKNVIGLKWVFRTKYNADGSIQKHKARLVAKGYSQQQGVDFDETFSPVARFETV 909
Query: 966 RTVLTIALSRSWPIHQLDVQNAFLHGDLHETVYMHQPLGFRDPNHPDYVCRLRKSLYGLK 1025
R VL +A P++Q DV++AFL+GDL E VY+ QP GF + + V +LRK+LYGLK
Sbjct: 910 RVVLALAAQLHLPVYQFDVKSAFLNGDLEEEVYVSQPQGFMITGNENKVYKLRKALYGLK 969
Query: 1026 QAPRAWYQCFADYVSTIGFQHSTSDHSLFIYRRGSDMAYLL-LYVDDIILISSSHDLRKS 1084
QAPRAWY + GF+ S ++ +L++ ++G+D L+ LYVDD+I I SS L
Sbjct: 970 QAPRAWYSKIDSFFQGSGFRRSDNEPTLYLKKQGTDEFLLVCLYVDDMIYIGSSKSLVND 1029
Query: 1085 IMALLASEFAMKDLGPLSYFLGIAVTRHAGGLFLSQSTYARDIIARAGMASCHPSATPVD 1144
+ + F M DLG L YFLG+ V + G+F+SQ YA D++ + M +C + TP++
Sbjct: 1030 FKSNMMRNFEMSDLGLLKYFLGLEVIQDKDGIFISQKKYAEDLLKKFQMMNCEVATTPMN 1089
Query: 1145 TKQKLSTSAGTPCDDPTLYRSLVGALQYLTFTRPDISYAVQQVCLHMHAPRTEHMLALKR 1204
+KL + GT +P L+RSLVG L YLT TRPDI+++V V + +P +H A KR
Sbjct: 1090 INEKLQRADGTEKANPKLFRSLVGGLNYLTHTRPDIAFSVSVVSRFLQSPTKQHFGAAKR 1149
Query: 1205 ILRYVQGTLQLGLHLYPSPIEKLISYTDADWGGCLDTRRSTSGYCVFLGDNLISWSSKRQ 1264
+LRYV GT G+ +P +L+ +TD+D+ GCLD R+STSG C G +++WSSK+Q
Sbjct: 1150 VLRYVAGTTDFGIWYSKAPNFRLVGFTDSDYAGCLDDRKSTSGSCFSFGSGVVTWSSKKQ 1209
Query: 1265 PTLSRSSAEAEYRGVANVVSESCWLRNLLLELHFPLS*ATLVYCDNVSAIYLSGNPVQHQ 1324
T++ S++EAEY + ++ WLR LL + + +T ++ D+ SAI ++ NP H
Sbjct: 1210 ETVALSTSEAEYTAASLAARQALWLRKLLEDFSYEQKESTEIFSDSKSAIAMAKNPSFHG 1269
Query: 1325 RTKHIEMDIHFVREKVARGQARVLHVPSRHQIADIFTKGLPRVLFDDFRSSLSV 1378
RTKHI++ HF+R VA G+ + + Q ADIFTK LP+ + FR L V
Sbjct: 1270 RTKHIDVQYHFIRTLVADGRIVLKFCSTNEQAADIFTKSLPQAKHEYFRLQLGV 1323
>emb|CAB10526.1| retrotransposon like protein [Arabidopsis thaliana]
gi|7268497|emb|CAB78748.1| retrotransposon like protein
[Arabidopsis thaliana] gi|7444421|pir||A71444 probable
LTR retrotransposon - Arabidopsis thaliana
Length = 1433
Score = 596 bits (1536), Expect = e-168
Identities = 352/983 (35%), Positives = 498/983 (49%), Gaps = 50/983 (5%)
Query: 406 LSLSHVLHTPQIVKNLISVRQLTTDNNVSVCFDPYGFSVIDFQTGIPLMRCNSPGDLYPV 465
+SL +VL+ P+ NLIS +LT + + V+DF + + P
Sbjct: 482 ISLHNVLYIPEFKFNLIS--ELTKELMIGRGSQVGNLYVLDFNENNHTVSLKGTTSMCPE 539
Query: 466 TPSFPFAGLAQSLWHSRLGHPSSSALQSLRSN-----KFISYEHLNSSPVCESCVFGKHV 520
+ WH RLGHP+ S + L K I+ EH VC C K
Sbjct: 540 FSVCSSVVVDSVTWHKRLGHPAYSKIDLLSDVLNLKVKKINKEHSPVCHVCHVCHLSKQK 599
Query: 521 RLPFVSSNNVTVMPFDILHSDLWTSPVLSSAGHRFYVLFLDDFTDFLWTFPLSNKSQVFE 580
L F S N+ FD++H D W F D W + L NKS V
Sbjct: 600 HLSFQSRQNMCSAAFDLVHIDTWGP-------------FSVPTNDATWIYLLKNKSDVLH 646
Query: 581 MFISLSNQIRTHFSQTIKCLQCDNGREFDNKSFHDYCAANGLIFRFSCPHTSSQNGKAER 640
+F + N + T + +K ++ DN E F D AA+G++ SCP T QN ER
Sbjct: 647 VFPAFINMVHTQYQTKLKSVRSDNAHEL---KFTDLFAAHGIVAYHSCPETPEQNSVVER 703
Query: 641 KIRTINNMIRTLLAHASVPPSFWHHALQMATYLLNIIPRKNLSNLSPTQLLYRRDPSYTH 700
K + I N+ R LL +++P FW + A +L+N +P L+N SP + L P+Y
Sbjct: 704 KHQHILNVARALLFQSNIPLEFWGDCVLTAVFLINRLPTPVLNNKSPYEKLKNIPPAYES 763
Query: 701 LRVFGCLCYPLVPSSTINKLQPRSTPCVFLGYPLHHRGYKCFDLSHRKVIISRHVIFDET 760
L+ FGCLCY +K +PR+ CVFLGYPL ++GYK D+ V ISRHVIF E
Sbjct: 764 LKTFGCLCYSSTSPKQRHKFEPRARACVFLGYPLGYKGYKLLDIETHAVSISRHVIFHED 823
Query: 761 QFPFANLTPTPSSTYEWLSDDIHPSV-IHRWTTQTPSPDLQPTPVAPSATATPPTSTASS 819
FPF + T + DDI + ++ +T L+ T + T P SS
Sbjct: 824 IFPFISST---------IKDDIKDFFPLLQFPARTDDLPLEQTSIID----THPHQDVSS 870
Query: 820 SSPSDPSPSSSTPQSPPQPAPPVRTMATRSMRGIYKPRKLFNLSVTIDDPTISPLPKNPK 879
S P P S Q PP +P F I++ T + +P+
Sbjct: 871 SKALVPFD----PLSKRQKKPPKHLQDFHCYNNTTEPFHAF-----INNITNAVIPQRYS 921
Query: 880 LALSDPNWKSAMQSEFDALIRNNTWDLVPRPCDVNIIRCMWIFRHKTKANGCFERYKARL 939
A W AM+ E A++R NTW +V P + I C W+F K A+G ERYKARL
Sbjct: 922 EAKDFKAWCDAMKEEIGAMVRTNTWSVVSLPPNKKAIGCKWVFTIKHNADGSIERYKARL 981
Query: 940 VGDGRSQIAGVDCDETFSHVVKPATIRTVLTIALSRSWPIHQLDVQNAFLHGDLHETVYM 999
V G +Q G+D +ETFS V K ++R +L +A W +HQLD+ NAFL+GDL E +YM
Sbjct: 982 VAKGYTQEEGLDYEETFSPVAKLTSVRMMLLLAAKMKWSVHQLDISNAFLNGDLDEEIYM 1041
Query: 1000 HQPLGFRD----PNHPDYVCRLRKSLYGLKQAPRAWYQCFADYVSTIGFQHSTSDHSLFI 1055
P G+ D P +CRL KS+YGLKQA R WY ++ + +GFQ S +DH+LFI
Sbjct: 1042 KIPPGYADLVGEALPPHAICRLHKSIYGLKQASRQWYLKLSNTLKGMGFQKSNADHTLFI 1101
Query: 1056 YRRGSDMAYLLLYVDDIILISSSHDLRKSIMALLASEFAMKDLGPLSYFLGIAVTRHAGG 1115
+ +L+YVDDI+++S+S D A L S F ++DLG YFLGI + R G
Sbjct: 1102 KYANGVLMGVLVYVDDIMIVSNSDDAVAQFTAELKSYFKLRDLGAAKYFLGIEIARSEKG 1161
Query: 1116 LFLSQSTYARDIIARAGMASCHPSATPVDTKQKLSTSAGTPCDDPTLYRSLVGALQYLTF 1175
+ + Q Y ++++ G PS+ P+D KL+ G P D T YR LVG L YL
Sbjct: 1162 ISICQRKYILELLSTTGFLGSKPSSIPLDPSVKLNKEDGVPLTDSTSYRKLVGKLMYLQI 1221
Query: 1176 TRPDISYAVQQVCLHMHAPRTEHMLALKRILRYVQGTLQLGLHLYPSPIEKLISYTDADW 1235
TRPDI+YAV +C HAP + H+ A+ ++LRY++GT+ GL L YTD+D+
Sbjct: 1222 TRPDIAYAVNTLCQFSHAPTSVHLSAVHKVLRYLKGTVGQGLFYSADDKFDLRGYTDSDF 1281
Query: 1236 GGCLDTRRSTSGYCVFLGDNLISWSSKRQPTLSRSSAEAEYRGVANVVSESCWLRNLLLE 1295
G C D+RR + YC+F+GD L+SW SK+Q T+S S+AEAE+R ++ E WL L +
Sbjct: 1282 GSCTDSRRCVAAYCMFIGDYLVSWKSKKQDTVSMSTAEAEFRAMSQGTKEMIWLSRLFDD 1341
Query: 1296 LHFPLS*ATLVYCDNVSAIYLSGNPVQHQRTKHIEMDIHFVREKVARGQARVLHVPSRHQ 1355
P +YCDN +A+++ N V H+RTK +E+D + RE V G + + V + Q
Sbjct: 1342 FKVPFIPPAYLYCDNTAALHIVNNSVFHERTKFVELDCYKTREAVESGFLKTMFVETGEQ 1401
Query: 1356 IADIFTKGLPRVLFDDFRSSLSV 1378
+AD TK + F + V
Sbjct: 1402 VADPLTKAIHPAQFHKLIGKMGV 1424
Database: nr
Posted date: Jul 5, 2005 12:34 AM
Number of letters in database: 863,360,394
Number of sequences in database: 2,540,612
Lambda K H
0.329 0.141 0.453
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,420,571,759
Number of Sequences: 2540612
Number of extensions: 107724001
Number of successful extensions: 807201
Number of sequences better than 10.0: 5126
Number of HSP's better than 10.0 without gapping: 2496
Number of HSP's successfully gapped in prelim test: 2866
Number of HSP's that attempted gapping in prelim test: 709765
Number of HSP's gapped (non-prelim): 38983
length of query: 1379
length of database: 863,360,394
effective HSP length: 141
effective length of query: 1238
effective length of database: 505,134,102
effective search space: 625356018276
effective search space used: 625356018276
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 82 (36.2 bits)
Lotus: description of TM0234.6