BLAST2 result
BLASTP 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TM0233.11
(95 letters)
Database: nr
2,540,612 sequences; 863,360,394 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAM63726.1| plastid-specific ribosomal protein 6 precursor (P... 102 2e-21
emb|CAA32187.1| unnamed protein product [Pisum sativum] gi|71308... 94 1e-18
gb|AAF64189.1| plastid-specific ribosomal protein 6 precursor [S... 91 7e-18
gb|EAA41842.1| GLP_158_8427_7171 [Giardia lamblia ATCC 50803] 38 0.072
ref|XP_619421.1| PREDICTED: hypothetical protein XP_619421 [Mus ... 37 0.16
gb|AAK32718.1| caspase recruitment domain protein 6 [Homo sapien... 34 0.79
gb|AAH93825.1| CARD6 protein [Homo sapiens] gi|16554564|ref|NP_1... 34 0.79
ref|ZP_00291820.1| COG0557: Exoribonuclease R [Thermobifida fusca] 33 1.4
gb|EAA51310.1| predicted protein [Magnaporthe grisea 70-15] gi|3... 33 1.8
emb|CAA40713.1| non-claret disjunctional (ncd) kinesin-related m... 33 2.3
gb|AAA28716.1| non-claret disjunctional protein 33 2.3
ref|XP_466718.1| unknown protein [Oryza sativa (japonica cultiva... 33 2.3
gb|AAV34672.1| kinesin-like motor protein [Drosophila melanogaster] 33 2.3
gb|AAF56942.1| CG7831-PA [Drosophila melanogaster] gi|17136354|r... 33 2.3
emb|CAA36998.1| claret segregational product, claret disjunctin ... 33 2.3
ref|XP_477951.1| hypothetical protein [Oryza sativa (japonica cu... 32 3.0
emb|CAG60822.1| unnamed protein product [Candida glabrata CBS138... 32 3.9
dbj|BAC69094.1| putative 3-ketoacyl-CoA thiolase/acetyl-CoA acet... 32 3.9
emb|CAH76973.1| conserved hypothetical protein [Plasmodium chaba... 32 3.9
emb|CAH94599.1| conserved hypothetical protein [Plasmodium berghei] 32 3.9
>gb|AAM63726.1| plastid-specific ribosomal protein 6 precursor (Psrp-6)-like
[Arabidopsis thaliana] gi|10177888|dbj|BAB11220.1|
unnamed protein product [Arabidopsis thaliana]
gi|20147339|gb|AAM10383.1| AT5g17870/MPI7_10
[Arabidopsis thaliana] gi|18418457|ref|NP_568358.1|
plastid-specific ribosomal protein-related [Arabidopsis
thaliana] gi|14517428|gb|AAK62604.1| AT5g17870/MPI7_10
[Arabidopsis thaliana]
Length = 106
Score = 102 bits (254), Expect = 2e-21
Identities = 53/89 (59%), Positives = 66/89 (73%), Gaps = 12/89 (13%)
Query: 6 SCSSIFG---VAMAAAPP----QMERRGNG-----VIVCSSRPQKKATAHHRKSRPRKSQ 53
S S+IFG V +AA+P Q+ + GNG VI CSSRPQKK+TAHHRK+RP+K+Q
Sbjct: 2 SVSAIFGTGIVTVAASPVLRQFQVPKLGNGGGLGMVIECSSRPQKKSTAHHRKTRPKKTQ 61
Query: 54 PWDINRKPTVYAPLPPLPSDWTLVVSAAD 82
PWDI RKPTVYAPLPPLP++W+ A+D
Sbjct: 62 PWDIKRKPTVYAPLPPLPAEWSPFTLASD 90
>emb|CAA32187.1| unnamed protein product [Pisum sativum] gi|71308|pir||R5PM25
ribosomal protein PsCL25 precursor, chloroplast - garden
pea gi|132825|sp|P11892|RK25_PEA 50S ribosomal protein
CL25, chloroplast precursor
Length = 104
Score = 93.6 bits (231), Expect = 1e-18
Identities = 54/102 (52%), Positives = 69/102 (66%), Gaps = 12/102 (11%)
Query: 4 LSSCSSIFGVAMAAAPP--------QMERR---GNGVIVCSSRPQKKATAHHRKSRPRKS 52
++S SSIFG ++ AP + ERR G +I CSSRPQKK+TAHH K+RPRKS
Sbjct: 1 MASVSSIFGCGVSMAPNSSLRNKAIRTERRSACGGLLIECSSRPQKKSTAHHMKTRPRKS 60
Query: 53 QPWDINRKPTVYAPLPPLPSDWTLVVSAADASSDEAVAVTPS 94
+ D NRKPTVYAPLPPLP D+T+V+ ADAS+ + P+
Sbjct: 61 RLSDRNRKPTVYAPLPPLPPDFTIVI-PADASTVDFTPPPPT 101
>gb|AAF64189.1| plastid-specific ribosomal protein 6 precursor [Spinacia oleracea]
Length = 116
Score = 90.9 bits (224), Expect = 7e-18
Identities = 45/90 (50%), Positives = 56/90 (62%), Gaps = 2/90 (2%)
Query: 8 SSIFGVAMAAAPPQMERRGNGVIV--CSSRPQKKATAHHRKSRPRKSQPWDINRKPTVYA 65
SS+ G + P G GVI CSSRPQKK TAHH K+RP+K+ WDI R P VY
Sbjct: 21 SSVDGRTVKLQPSTGGSCGGGVITIECSSRPQKKGTAHHMKTRPKKTARWDIKRGPAVYP 80
Query: 66 PLPPLPSDWTLVVSAADASSDEAVAVTPSA 95
PLPPLP++WT+V SA D + + + SA
Sbjct: 81 PLPPLPAEWTIVSSAVDEADSSSSTTSSSA 110
>gb|EAA41842.1| GLP_158_8427_7171 [Giardia lamblia ATCC 50803]
Length = 418
Score = 37.7 bits (86), Expect = 0.072
Identities = 24/85 (28%), Positives = 38/85 (44%), Gaps = 1/85 (1%)
Query: 12 GVAMAAAPPQMERRGNGVIVCSS-RPQKKATAHHRKSRPRKSQPWDINRKPTVYAPLPPL 70
G + AA+ + G G + S PQK R + + +QP R+P V P+PP
Sbjct: 34 GASSAASIQSVTFAGLGTAITSGPAPQKSGQTKARTTSGKPAQPGSAPRQPQVRVPMPPH 93
Query: 71 PSDWTLVVSAADASSDEAVAVTPSA 95
S + + +SS + V P+A
Sbjct: 94 ASHGPMASTKLTSSSTSSTLVKPNA 118
>ref|XP_619421.1| PREDICTED: hypothetical protein XP_619421 [Mus musculus]
Length = 306
Score = 36.6 bits (83), Expect = 0.16
Identities = 19/56 (33%), Positives = 24/56 (41%)
Query: 40 ATAHHRKSRPRKSQPWDINRKPTVYAPLPPLPSDWTLVVSAADASSDEAVAVTPSA 95
A A H RP + P I R P+ Y P P+P+D S +S A P A
Sbjct: 54 ARARHLPRRPASAAPRSIRRVPSPYPPALPIPADHVAARSPVQLASSSPAAPAPPA 109
>gb|AAK32718.1| caspase recruitment domain protein 6 [Homo sapiens]
gi|20454847|sp|Q9BX69|CAR6_HUMAN Caspase recruitment
domain protein 6
Length = 1037
Score = 34.3 bits (77), Expect = 0.79
Identities = 18/57 (31%), Positives = 28/57 (48%), Gaps = 2/57 (3%)
Query: 32 CSSRPQKKATAHHRKSRPRKSQPWDINRKPTVYAPLPPLPSDWTLVVSAADASSDEA 88
C S+P + + + ++P+ SQPW KP+ P PP P + S A A +A
Sbjct: 975 CQSQPSQTKPSPCKSTQPKPSQPWPPQSKPS--QPRPPQPKSSSTNPSQAKAHHSKA 1029
>gb|AAH93825.1| CARD6 protein [Homo sapiens] gi|16554564|ref|NP_115976.2| caspase
recruitment domain family, member 6 [Homo sapiens]
Length = 1037
Score = 34.3 bits (77), Expect = 0.79
Identities = 18/57 (31%), Positives = 28/57 (48%), Gaps = 2/57 (3%)
Query: 32 CSSRPQKKATAHHRKSRPRKSQPWDINRKPTVYAPLPPLPSDWTLVVSAADASSDEA 88
C S+P + + + ++P+ SQPW KP+ P PP P + S A A +A
Sbjct: 975 CQSQPSQTKPSPCKSTQPKPSQPWPPQSKPS--QPRPPQPKSSSTNPSQAKAHHSKA 1029
>ref|ZP_00291820.1| COG0557: Exoribonuclease R [Thermobifida fusca]
Length = 1160
Score = 33.5 bits (75), Expect = 1.4
Identities = 23/66 (34%), Positives = 30/66 (44%), Gaps = 7/66 (10%)
Query: 36 PQKKATAHHRKSRPRK-SQPWDI-----NRKPTVYAPLP-PLPSDWTLVVSAADASSDEA 88
P ++ R +RPR + PWD+ V AP P P PS W AD S+ E
Sbjct: 441 PAEEPRPQRRSNRPRPHAAPWDLPPVARTSDTGVPAPKPSPAPSPWEEPRDTADVSAAED 500
Query: 89 VAVTPS 94
AV P+
Sbjct: 501 AAVVPA 506
>gb|EAA51310.1| predicted protein [Magnaporthe grisea 70-15]
gi|39960626|ref|XP_364599.1| predicted protein
[Magnaporthe grisea 70-15]
Length = 586
Score = 33.1 bits (74), Expect = 1.8
Identities = 19/47 (40%), Positives = 24/47 (50%), Gaps = 2/47 (4%)
Query: 29 VIVCSSRPQKKATAHHRKSRPRKSQ-PWDINR-KPTVYAPLPPLPSD 73
V + +S PQ HH + R +S+ W N P V PLPPLP D
Sbjct: 25 VTLLTSEPQPPTRQHHSRLRQMRSRLSWHGNFFTPAVTLPLPPLPDD 71
>emb|CAA40713.1| non-claret disjunctional (ncd) kinesin-related microtubule motor
protein [Drosophila melanogaster]
Length = 700
Score = 32.7 bits (73), Expect = 2.3
Identities = 27/76 (35%), Positives = 31/76 (40%), Gaps = 8/76 (10%)
Query: 19 PPQMERRGNGVIVCSSRPQKKATAHHRKSRPRKSQPWDIN----RKPTVYAP-LPPLPSD 73
P +ERRG G S P K HR R DIN K T AP LP +PS
Sbjct: 65 PQVLERRGGGARAASPEPMKLG---HRAKLRRSRSACDINELRGNKRTAAAPSLPSIPSK 121
Query: 74 WTLVVSAADASSDEAV 89
+ + A SS V
Sbjct: 122 VSRLGGALTVSSQRLV 137
>gb|AAA28716.1| non-claret disjunctional protein
Length = 685
Score = 32.7 bits (73), Expect = 2.3
Identities = 27/76 (35%), Positives = 31/76 (40%), Gaps = 8/76 (10%)
Query: 19 PPQMERRGNGVIVCSSRPQKKATAHHRKSRPRKSQPWDIN----RKPTVYAP-LPPLPSD 73
P +ERRG G S P K HR R DIN K T AP LP +PS
Sbjct: 50 PQVLERRGGGARAASPEPMKLG---HRAKLRRSRSACDINELRGNKRTAAAPSLPSIPSK 106
Query: 74 WTLVVSAADASSDEAV 89
+ + A SS V
Sbjct: 107 VSRLGGALTVSSQRLV 122
>ref|XP_466718.1| unknown protein [Oryza sativa (japonica cultivar-group)]
gi|47497655|dbj|BAD19723.1| unknown protein [Oryza
sativa (japonica cultivar-group)]
Length = 144
Score = 32.7 bits (73), Expect = 2.3
Identities = 20/69 (28%), Positives = 35/69 (49%), Gaps = 8/69 (11%)
Query: 13 VAMAAAPPQMERRGNGVIVCSSRPQKKATAHHRKSRPRKSQPWDINRKPTVY-------A 65
+A AA P + RR + ++VC++ ++K T P + + R+P ++
Sbjct: 36 LARAAVPSRRRRRWDALVVCAAPDEEKITRRSPLDFPIEWEKPKPGRRPDIFPKFSPMKT 95
Query: 66 PLP-PLPSD 73
PLP PLP+D
Sbjct: 96 PLPHPLPAD 104
>gb|AAV34672.1| kinesin-like motor protein [Drosophila melanogaster]
Length = 535
Score = 32.7 bits (73), Expect = 2.3
Identities = 27/76 (35%), Positives = 31/76 (40%), Gaps = 8/76 (10%)
Query: 19 PPQMERRGNGVIVCSSRPQKKATAHHRKSRPRKSQPWDIN----RKPTVYAP-LPPLPSD 73
P +ERRG G S P K HR R DIN K T AP LP +PS
Sbjct: 65 PQVLERRGGGARAASPEPMKLG---HRAKLRRSRSACDINELRGNKRTAAAPSLPSIPSK 121
Query: 74 WTLVVSAADASSDEAV 89
+ + A SS V
Sbjct: 122 VSRLGGALTVSSQRLV 137
>gb|AAF56942.1| CG7831-PA [Drosophila melanogaster] gi|17136354|ref|NP_476651.1|
CG7831-PA [Drosophila melanogaster]
gi|16184705|gb|AAL13825.1| LD29131p [Drosophila
melanogaster] gi|127945|sp|P20480|NCD_DROME Claret
segregational protein
Length = 700
Score = 32.7 bits (73), Expect = 2.3
Identities = 27/76 (35%), Positives = 31/76 (40%), Gaps = 8/76 (10%)
Query: 19 PPQMERRGNGVIVCSSRPQKKATAHHRKSRPRKSQPWDIN----RKPTVYAP-LPPLPSD 73
P +ERRG G S P K HR R DIN K T AP LP +PS
Sbjct: 65 PQVLERRGGGARAASPEPMKLG---HRAKLRRSRSACDINELRGNKRTAAAPSLPSIPSK 121
Query: 74 WTLVVSAADASSDEAV 89
+ + A SS V
Sbjct: 122 VSRLGGALTVSSQRLV 137
>emb|CAA36998.1| claret segregational product, claret disjunctin [Drosophila
melanogaster] gi|226843|prf||1608209A kinesin related
protein
Length = 700
Score = 32.7 bits (73), Expect = 2.3
Identities = 27/76 (35%), Positives = 31/76 (40%), Gaps = 8/76 (10%)
Query: 19 PPQMERRGNGVIVCSSRPQKKATAHHRKSRPRKSQPWDIN----RKPTVYAP-LPPLPSD 73
P +ERRG G S P K HR R DIN K T AP LP +PS
Sbjct: 65 PQVLERRGGGARAASPEPMKLG---HRAKLRRSRSACDINELRGNKRTAAAPSLPSIPSK 121
Query: 74 WTLVVSAADASSDEAV 89
+ + A SS V
Sbjct: 122 VSRLGGALTVSSQRLV 137
>ref|XP_477951.1| hypothetical protein [Oryza sativa (japonica cultivar-group)]
gi|28411933|dbj|BAC57377.1| hypothetical protein [Oryza
sativa (japonica cultivar-group)]
Length = 298
Score = 32.3 bits (72), Expect = 3.0
Identities = 22/57 (38%), Positives = 26/57 (45%), Gaps = 1/57 (1%)
Query: 32 CSSRPQKKATAHHRK-SRPRKSQPWDINRKPTVYAPLPPLPSDWTLVVSAADASSDE 87
C P A+ R+ SRP +S D R P P PPL S +SAA SDE
Sbjct: 213 CRHGPALSASLRCRRPSRPPRSPLVDAGRAPPCRRPPPPLRSSSKRTLSAAAVPSDE 269
>emb|CAG60822.1| unnamed protein product [Candida glabrata CBS138]
gi|50290881|ref|XP_447873.1| unnamed protein product
[Candida glabrata]
Length = 661
Score = 32.0 bits (71), Expect = 3.9
Identities = 12/29 (41%), Positives = 18/29 (61%)
Query: 39 KATAHHRKSRPRKSQPWDINRKPTVYAPL 67
+ ++HHRK RP P DINR ++P+
Sbjct: 466 RTSSHHRKPRPTSYYPVDINRSANNFSPI 494
>dbj|BAC69094.1| putative 3-ketoacyl-CoA thiolase/acetyl-CoA acetyltransferase
[Streptomyces avermitilis MA-4680]
gi|29827925|ref|NP_822559.1| putative 3-ketoacyl-CoA
thiolase/acetyl-CoA acetyltransferase [Streptomyces
avermitilis MA-4680]
Length = 399
Score = 32.0 bits (71), Expect = 3.9
Identities = 20/67 (29%), Positives = 31/67 (45%), Gaps = 1/67 (1%)
Query: 1 MSVLSSCSSIFGVAMAAAPPQMERRGNGVIVCSSRPQKKATAHHRKSRPRKSQPWDINRK 60
M+V CSS +A+A A Q+ G V V + R + R + PW + K
Sbjct: 84 MTVDRQCSSGL-MAIATAAKQIVTDGMQVAVGGGVESISLVQNDRMNTHRMADPWLVEHK 142
Query: 61 PTVYAPL 67
P++Y P+
Sbjct: 143 PSIYMPM 149
>emb|CAH76973.1| conserved hypothetical protein [Plasmodium chabaudi]
Length = 865
Score = 32.0 bits (71), Expect = 3.9
Identities = 16/37 (43%), Positives = 21/37 (56%)
Query: 30 IVCSSRPQKKATAHHRKSRPRKSQPWDINRKPTVYAP 66
I SSR Q K+T + RPRK + +I R P +Y P
Sbjct: 35 IFMSSRVQLKSTKLQHRKRPRKRKKSEIYRTPVLYHP 71
>emb|CAH94599.1| conserved hypothetical protein [Plasmodium berghei]
Length = 883
Score = 32.0 bits (71), Expect = 3.9
Identities = 16/37 (43%), Positives = 21/37 (56%)
Query: 30 IVCSSRPQKKATAHHRKSRPRKSQPWDINRKPTVYAP 66
I SSR Q K+T + RPRK + +I R P +Y P
Sbjct: 35 IYMSSRVQLKSTKLQHRKRPRKRKKSEIYRTPVLYNP 71
Database: nr
Posted date: Jul 5, 2005 12:34 AM
Number of letters in database: 863,360,394
Number of sequences in database: 2,540,612
Lambda K H
0.314 0.124 0.375
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 161,886,911
Number of Sequences: 2540612
Number of extensions: 6099579
Number of successful extensions: 19469
Number of sequences better than 10.0: 41
Number of HSP's better than 10.0 without gapping: 21
Number of HSP's successfully gapped in prelim test: 21
Number of HSP's that attempted gapping in prelim test: 19440
Number of HSP's gapped (non-prelim): 46
length of query: 95
length of database: 863,360,394
effective HSP length: 71
effective length of query: 24
effective length of database: 682,976,942
effective search space: 16391446608
effective search space used: 16391446608
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 68 (30.8 bits)
Lotus: description of TM0233.11