BLAST2 result
BLASTP 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TM0229.10
(277 letters)
Database: nr
2,540,612 sequences; 863,360,394 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAA57005.1| copia-like retrotransposon Hopscotch polyprotein ... 99 2e-19
gb|AAP51971.1| putative copia-type polyprotein [Oryza sativa (ja... 98 2e-19
gb|AAP54850.1| putative gag-pol polyprotein [Oryza sativa (japon... 96 1e-18
gb|AAG46116.1| putative copia-like retrotransposon polyprotein [... 96 1e-18
gb|AAP54977.1| putative gag-pol polyprotein [Oryza sativa (japon... 93 7e-18
emb|CAE04646.2| OSJNBa0061G20.2 [Oryza sativa (japonica cultivar... 93 7e-18
gb|AAP51877.1| putative gag-pol polyprotein [Oryza sativa (japon... 93 9e-18
ref|NP_916434.1| putative gag/pol polyprotein [Oryza sativa (jap... 90 6e-17
gb|AAP53070.1| putative retroelement [Oryza sativa (japonica cul... 87 4e-16
gb|AAN34944.1| Putative retroelement [Oryza sativa (japonica cul... 87 4e-16
emb|CAE05956.3| OSJNBb0088C09.15 [Oryza sativa (japonica cultiva... 87 5e-16
gb|AAN06870.1| Putative gag-pol polyprotein [Oryza sativa (japon... 87 7e-16
gb|AAF02855.1| Similar to retrotransposon proteins [Arabidopsis ... 84 3e-15
gb|AAU43956.1| unknown protein [Oryza sativa (japonica cultivar-... 84 4e-15
dbj|BAC19858.1| orf490 [Oryza sativa (japonica cultivar-group)] 84 6e-15
pir||H86464 hypothetical protein F12G12.9 [imported] - Arabidops... 83 7e-15
emb|CAB79576.1| putative protein [Arabidopsis thaliana] gi|32692... 83 1e-14
gb|AAV24907.1| hypothetical protein [Oryza sativa (japonica cult... 81 3e-14
gb|AAP20859.1| retrotransposon protein, putative, Ty1-copia sub-... 81 4e-14
gb|AAT85031.1| putative polyprotein [Oryza sativa (japonica cult... 81 4e-14
>gb|AAA57005.1| copia-like retrotransposon Hopscotch polyprotein [Zea mays]
gi|7444442|pir||T02087 gag/pol polyprotein - maize
retrotransposon Hopscotch
Length = 1439
Score = 98.6 bits (244), Expect = 2e-19
Identities = 79/227 (34%), Positives = 116/227 (50%), Gaps = 28/227 (12%)
Query: 1 DIIITGSSSALMNNFISKLNLVFLLKQLG*LEHFLGIEVKSLSDGTLVLTQFRYIRDL*A 60
DIIITGSS ++N ++KL F +K LG L +FLGIEV DG L+L Q +Y RDL
Sbjct: 1121 DIIITGSSPHAIDNVLAKLKDDFAIKDLGDLHYFLGIEVHRKGDG-LLLCQEKYARDLLK 1179
Query: 61 KVN----------ISYGEKLQ-----IPHNRGCSFYGSIAGSLQ*LTITRPEQSYSVKKV 105
+V ++ EKL + + Y S+ G+LQ LT+TRP+ SY++ +V
Sbjct: 1180 RVGMECCKPVHTPVATSEKLSASAGTLLSPEETTKYRSVVGALQYLTLTRPDLSYAINRV 1239
Query: 106 CPFMSSLHDSHRTAI-----NASSTNSKAMSLLASSQACFSRLSFISSWV**C*LGHGS* 160
C F+ + D H TA+ N T +++ S S S + W G
Sbjct: 1240 CQFLHAPTDLHWTAVKRILRNIQHTIGLGLTIRPSLSLMLSAFS-DADWA-----GCPDD 1293
Query: 161 RSSFYLRCVYLLRPILIFWRS*KQTVVSGSSSEAEYRSLGLSSCRYV 207
R S ++ L P LI W S KQ+ VS SS+EAEY+++ ++ +
Sbjct: 1294 RKSTGGYALF-LGPNLISWNSKKQSTVSRSSTEAEYKAMANATAEVI 1339
>gb|AAP51971.1| putative copia-type polyprotein [Oryza sativa (japonica
cultivar-group)] gi|37530764|ref|NP_919684.1| putative
copia-type polyprotein [Oryza sativa (japonica
cultivar-group)] gi|20042923|gb|AAM08751.1| Putative
copia-type polyprotein [Oryza sativa (japonica
cultivar-group)]
Length = 1803
Score = 98.2 bits (243), Expect = 2e-19
Identities = 91/298 (30%), Positives = 148/298 (49%), Gaps = 31/298 (10%)
Query: 1 DIIITGSSSALMNNFISKLNLVFLLKQLG*LEHFLGIEVKSLSDGTLVLTQFRYIRDL*A 60
D+I++ SSS+L+ I +L F +K +G L++FLGIEV+ +DG VL+Q +Y D+
Sbjct: 1091 DMILSASSSSLLQRIIDRLQAEFKVKDMGPLKYFLGIEVQRTADG-FVLSQSKYATDVLE 1149
Query: 61 KVNISYGEKLQIPHN-------------RGCSFYGSIAGSLQ*LTITRPEQSYSVKKVCP 107
+ ++ + + P + + S+Y SIAG+LQ LT+TRP+ +Y+V++VC
Sbjct: 1150 RAGMANCKAVATPADAKPKLSSDEGPLFQDSSWYRSIAGALQYLTLTRPDIAYAVQQVCL 1209
Query: 108 FMSSLHDSHRTAIN-----ASSTNSKAMSLLASSQACFSRLSFISSWV**C*LGHGS*RS 162
M + ++H T + T + + L AS+ + S + W G R
Sbjct: 1210 HMHAPREAHVTLLKRILRYIKGTAAFGLHLRASTSPTLTAFS-DADWA-----GCPDTRR 1263
Query: 163 SFYLRCVYLLRPILIFWRS*KQTVVSGSSSEAEYRSL--GLSSCRYVKDPDSITWLKVVN 220
S C++ L LI W S +QT VS SS+EAEYR + ++ C +++ +V
Sbjct: 1264 STSGFCIF-LGDSLISWSSKRQTTVSRSSAEAEYRGVANAVAECTWLRQLLGELHCRVPQ 1322
Query: 221 LNTA-PSIF*QVYHHFT*L*HYPTC*YYMELDILFFRKIVINRQLTAQHIPADLQLAN 277
A VY + H T ++ELDI F R+ V +L IP+ Q A+
Sbjct: 1323 ATIAYCDNISSVYMSKNPVHHKRT--KHIELDIHFVREKVALGELRVLPIPSAHQFAD 1378
>gb|AAP54850.1| putative gag-pol polyprotein [Oryza sativa (japonica cultivar-group)]
gi|37536522|ref|NP_922563.1| putative gag-pol polyprotein
[Oryza sativa (japonica cultivar-group)]
gi|13310887|gb|AAG13591.2| putative gag/pol polyprotein
[Oryza sativa]
Length = 1417
Score = 95.5 bits (236), Expect = 1e-18
Identities = 90/285 (31%), Positives = 139/285 (48%), Gaps = 37/285 (12%)
Query: 1 DIIITGSSSALMNNFISKLNLVFLLKQLG*LEHFLGIEVKSLSDGTLVLTQFRYIRDL*A 60
D+I++ SSS+L+ I +L F +K +G L++FLGIEV+ +DG VL+Q +Y D
Sbjct: 1091 DMILSASSSSLLQRIIDRLQAEFKVKDMGPLKYFLGIEVQRTADG-FVLSQSKYATD--- 1146
Query: 61 KVNISYGEKLQIPHNRGCSFYGSIAGSLQ*LTITRPEQSYSVKKVCPFMSSLHDSHRTAI 120
S+Y SIAG+LQ LT+TRP+ +Y+V++VC M + ++H T +
Sbjct: 1147 ----------------DSSWYRSIAGALQYLTLTRPDIAYAVQQVCLHMHAPREAHVTLL 1190
Query: 121 N-----ASSTNSKAMSLLASSQACFSRLSFISSWV**C*LGHGS*RSSFYLRCVYLLRPI 175
T + + L AS+ + S + W G R S C++ L
Sbjct: 1191 KRILRYIKGTAAFGLHLRASTSPTLTAFS-DADWA-----GCPDTRRSTSGFCIF-LGDS 1243
Query: 176 LIFWRS*KQTVVSGSSSEAEYRSL--GLSSCRYVKDPDSITWLKVVNLNTA-PSIF*QVY 232
LI W S +QT VS SS+EAEYR + ++ C +++ +V A VY
Sbjct: 1244 LISWSSKRQTTVSRSSAEAEYRGVANAVAECTWLRQLLGELHCRVPQATIAYCDNISSVY 1303
Query: 233 HHFT*L*HYPTC*YYMELDILFFRKIVINRQLTAQHIPADLQLAN 277
+ H T ++ELDI F R+ V +L IP+ Q A+
Sbjct: 1304 MSKNPVHHKRT--KHIELDIHFVREKVALGELRVLPIPSAHQFAD 1346
>gb|AAG46116.1| putative copia-like retrotransposon polyprotein [Oryza sativa]
Length = 1302
Score = 95.5 bits (236), Expect = 1e-18
Identities = 90/285 (31%), Positives = 139/285 (48%), Gaps = 37/285 (12%)
Query: 1 DIIITGSSSALMNNFISKLNLVFLLKQLG*LEHFLGIEVKSLSDGTLVLTQFRYIRDL*A 60
D+I++ SSS+L+ I +L F +K +G L++FLGIEV+ +DG VL+Q +Y D
Sbjct: 993 DMILSASSSSLLQRIIDRLQAEFKVKDMGPLKYFLGIEVQRTADG-FVLSQSKYATD--- 1048
Query: 61 KVNISYGEKLQIPHNRGCSFYGSIAGSLQ*LTITRPEQSYSVKKVCPFMSSLHDSHRTAI 120
S+Y SIAG+LQ LT+TRP+ +Y+V++VC M + ++H T +
Sbjct: 1049 ----------------DSSWYRSIAGALQYLTLTRPDIAYAVQQVCLHMHAPREAHVTLL 1092
Query: 121 N-----ASSTNSKAMSLLASSQACFSRLSFISSWV**C*LGHGS*RSSFYLRCVYLLRPI 175
T + + L AS+ + S + W G R S C++ L
Sbjct: 1093 KRILRYIKGTAAFGLHLRASTSPTLTAFS-DADWA-----GCPDTRRSTSGFCIF-LGDS 1145
Query: 176 LIFWRS*KQTVVSGSSSEAEYRSL--GLSSCRYVKDPDSITWLKVVNLNTA-PSIF*QVY 232
LI W S +QT VS SS+EAEYR + ++ C +++ +V A VY
Sbjct: 1146 LISWSSKRQTTVSRSSAEAEYRGVANAVAECTWLRQLLGELHCRVPQATIAYCDNISSVY 1205
Query: 233 HHFT*L*HYPTC*YYMELDILFFRKIVINRQLTAQHIPADLQLAN 277
+ H T ++ELDI F R+ V +L IP+ Q A+
Sbjct: 1206 MSKNPVHHKRT--KHIELDIHFVREKVALGELRVLPIPSAHQFAD 1248
>gb|AAP54977.1| putative gag-pol polyprotein [Oryza sativa (japonica
cultivar-group)] gi|37536776|ref|NP_922690.1| putative
gag-pol polyprotein [Oryza sativa (japonica
cultivar-group)] gi|14165328|gb|AAK55460.1| putative
gag-pol polyprotein [Oryza sativa (japonica
cultivar-group)]
Length = 1031
Score = 93.2 bits (230), Expect = 7e-18
Identities = 80/225 (35%), Positives = 110/225 (48%), Gaps = 40/225 (17%)
Query: 1 DIIITGSSSALMNNFISKLNLVFLLKQLG*LEHFLGIEVKSLSDGTLVLTQFRYIRDL*A 60
DII+ SS N + LN F LK LG L +FLGIEVK ++DG +VLTQ +Y D+
Sbjct: 718 DIIVASSSIVATNALLKNLNQEFALKDLGRLHYFLGIEVKEVNDG-IVLTQEKYAMDVLK 776
Query: 61 KVN----------ISYGEKLQIPHN-----RGCSFYGSIAGSLQ*LTITRPEQSYSVKKV 105
+VN +S EKL + Y S+ G+LQ LT+TRP+ S+SV KV
Sbjct: 777 RVNMSDCKAVNTPLSISEKLSAHEGNPLGPEDSTRYRSLVGALQYLTLTRPDLSFSVNKV 836
Query: 106 CPFMSSLHDSHRTA-----------INASSTNSKAMSLLASSQACFSRLSFISSWV**C* 154
C ++ + H A + SK+ SLL S+ FS + W
Sbjct: 837 CQYLHAATTKHWVAAKRILRYLKHTVKLGLKISKSNSLLVSA---FSD----ADWA---- 885
Query: 155 LGHGS*RSSFYLRCVYLLRPILIFWRS*KQTVVSGSSSEAEYRSL 199
G R S V+ + P L+ W + KQ VS SS+EAEY++L
Sbjct: 886 -GCLDDRRSTGGFAVF-IGPNLVSWSARKQATVSRSSTEAEYKAL 928
>emb|CAE04646.2| OSJNBa0061G20.2 [Oryza sativa (japonica cultivar-group)]
gi|50923461|ref|XP_472091.1| OSJNBa0061G20.2 [Oryza
sativa (japonica cultivar-group)]
Length = 542
Score = 93.2 bits (230), Expect = 7e-18
Identities = 95/310 (30%), Positives = 141/310 (44%), Gaps = 55/310 (17%)
Query: 1 DIIITGSSSALMNNFISKLNLVFLLKQLG*LEHFLGIEVKSLSDGTLVLTQFRYIRDL*- 59
DI++ SS L+ + I++L + F +K LG + FLGI+V+ +DG L+Q +Y D+
Sbjct: 222 DIVLAASSQRLLQHIINQLRVEFAMKDLGPVHFFLGIQVRRTADG-FFLSQEQYAGDVLD 280
Query: 60 -----------------AKVNISYGEKLQIPHNRGCSFYGSIAGSLQ*LTITRPEQSYSV 102
AKV+ + G+ P +FY SI G+LQ LT+TRP+ SY+V
Sbjct: 281 RAGLADCKPAPTPIDTKAKVSSTTGQPYSDP-----TFYRSIVGALQYLTLTRPDLSYAV 335
Query: 103 KKVCPFMSSLHDSHRTAIN-----ASSTNSKAMSLLASSQACFSRLSFISSWV**C*LGH 157
++VC M S D H T + T K + L SS + S + W G
Sbjct: 336 QQVCLHMHSPRDVHWTLVKRILRYVRGTTHKGLQLRRSSTPSLTAYSDV-DWA-----GC 389
Query: 158 GS*RSSFYLRCVYLLRPILIFWRS*KQTVVSGSSSEAEYRSLGLSSCRYVKDPDSITWLK 217
R S CV+ W S +Q+VVS SS+EAEYR + ++ WL+
Sbjct: 390 PDTRRSTSGFCVF-FGDSSESWSSKRQSVVSRSSAEAEYRGVANAAA-------ECCWLR 441
Query: 218 ------VVNLNTAPSIF*Q----VYHHFT*L*HYPTC*YYMELDILFFRKIVINRQLTAQ 267
V L+ A ++ VY L H ++ELD+ F R+ V +
Sbjct: 442 HLLGELHVKLDKATLVYCDNISAVYLSKNPLHHGRA--KHVELDVHFVREKVAVGDIRVA 499
Query: 268 HIPADLQLAN 277
HIP QLA+
Sbjct: 500 HIPTRQQLAD 509
>gb|AAP51877.1| putative gag-pol polyprotein [Oryza sativa (japonica
cultivar-group)] gi|37530576|ref|NP_919590.1| putative
gag-pol polyprotein [Oryza sativa (japonica
cultivar-group)] gi|17047028|gb|AAL34933.1| Putative
gag-pol polyprotein [Oryza sativa]
Length = 725
Score = 92.8 bits (229), Expect = 9e-18
Identities = 71/228 (31%), Positives = 121/228 (52%), Gaps = 28/228 (12%)
Query: 1 DIIITGSSSALMNNFISKLNLVFLLKQLG*LEHFLGIEVKSLSDGTLVLTQFRYIRDL*A 60
D+I++ SSS+L+ I +L F +K +G L++FLGIEV+ +DG VL+Q +Y ++
Sbjct: 367 DMILSASSSSLLQRIIDRLQAEFKVKDMGPLKYFLGIEVQRTADG-FVLSQSKYATNVLE 425
Query: 61 KVNISYGEKLQIPHN-------------RGCSFYGSIAGSLQ*LTITRPEQSYSVKKVCP 107
+ ++ + + P + + S+Y SI G+LQ LT+TRP+ +Y+V++VC
Sbjct: 426 RAGMANCKAVATPADAKPKLSSDEGPLFQDSSWYRSITGALQYLTLTRPDIAYAVQQVCL 485
Query: 108 FMSSLHDSHRTAIN-----ASSTNSKAMSLLASSQACFSRLSFISSWV**C*LGHGS*RS 162
M + ++H T + T + + L AS+ + S + W G R
Sbjct: 486 HMHAPREAHVTLLKRILRYIKGTAAFGLHLRASTSPTLTAFS-DADWA-----GCPDTRR 539
Query: 163 SFYLRCVYLLRPILIFWRS*KQTVVSGSSSEAEYRSL--GLSSCRYVK 208
S C++ L LI W S +QT VS SS+EAEYR + ++ C +++
Sbjct: 540 STSGFCIF-LGDSLISWSSKRQTTVSRSSAEAEYRGVANAVAECTWLR 586
>ref|NP_916434.1| putative gag/pol polyprotein [Oryza sativa (japonica cultivar-group)]
Length = 1090
Score = 90.1 bits (222), Expect = 6e-17
Identities = 89/304 (29%), Positives = 141/304 (46%), Gaps = 43/304 (14%)
Query: 1 DIIITGSSSALMNNFISKLNLVFLLKQLG*LEHFLGIEVKSLSDGTLVLTQFRYIRDL*A 60
DII+T S++ L+ ++L+ F + LG L FLGI VK DG L L+Q +Y DL
Sbjct: 760 DIILTASTTTLLQQLTARLHSEFAMTDLGDLHFFLGISVKRSPDG-LFLSQRQYAVDLLQ 818
Query: 61 KVNISYGEKLQIPHNRGC-------------SFYGSIAGSLQ*LTITRPEQSYSVKKVCP 107
+ ++ P + S Y SIAG+LQ LT+TRP+ +Y+V++VC
Sbjct: 819 RAGMAECHSTSTPVDTHAKLSATDGLPVADPSAYRSIAGALQYLTLTRPDLAYAVQQVCL 878
Query: 108 FMSSLHDSHRTAIN---ASSTNSKAMSLLASSQACFSRLSFI-SSWV**C*LGHGS*RSS 163
FM + H + S ++ L S S ++ + W G + R S
Sbjct: 879 FMHDPREPHLALVKRILRYVKGSLSIGLHIGSGPIQSLTAYSDADWA-----GCPNSRRS 933
Query: 164 FYLRCVYLLRPILIFWRS*KQTVVSGSSSEAEYRSL--GLSSCRYVKD--------PDSI 213
CVY L L+ W S +QT VS SS+EAEYR++ ++ C +++ S
Sbjct: 934 TSGYCVY-LGDNLVSWSSKRQTTVSRSSAEAEYRAVAHAVAECCWLRQLLQELHVPIASA 992
Query: 214 TWLKVVNLNTAPSIF*QVYHHFT*L*HYPTC*YYMELDILFFRKIVINRQLTAQHIPADL 273
T + N++ V+H T ++E+DI F R+ V Q+ ++P+
Sbjct: 993 TIVYCDNVSAVYMTANPVHHRRT---------KHIEIDIHFVREKVALGQVRVLYVPSSH 1043
Query: 274 QLAN 277
Q A+
Sbjct: 1044 QFAD 1047
>gb|AAP53070.1| putative retroelement [Oryza sativa (japonica cultivar-group)]
gi|37532962|ref|NP_920783.1| putative retroelement [Oryza
sativa (japonica cultivar-group)]
gi|21671985|gb|AAM74347.1| Putative retroelement [Oryza
sativa (japonica cultivar-group)]
Length = 1250
Score = 87.4 bits (215), Expect = 4e-16
Identities = 72/216 (33%), Positives = 106/216 (48%), Gaps = 24/216 (11%)
Query: 1 DIIITGSSSALMNNFISKLNLVFLLKQLG*LEHFLGIEVKSLSDGTLVLTQFRYIRDL*A 60
DI++T SS++L+ + ++L+ F + LG L FLGI V +DG L L+Q++Y DL
Sbjct: 1032 DILLTASSTSLLQHITARLHSEFAMTDLGDLHFFLGISVTRSADG-LFLSQWQYAVDLLR 1090
Query: 61 KVNISYGEKLQIPHNRGCSF-------------YGSIAGSLQ*LTITRPEQSYSVKKVCP 107
+ +S P + C Y S+AG+LQ LT+TRPE +Y++++VC
Sbjct: 1091 RAGMSECHPTATPVDARCKLSATDGAPVSDPMEYRSLAGALQYLTLTRPEIAYAIQQVCL 1150
Query: 108 FMSSLHDSHRTAINASSTNSKAM--SLLASSQACFSRLSFIS--SWV**C*LGHGS*RSS 163
FM + H + K L A L+ S WV G R S
Sbjct: 1151 FMHDPREPHLALVKRILRYIKGTLHICLHIGTAPVDSLTAYSDADWV-----GCPDSRHS 1205
Query: 164 FYLRCVYLLRPILIFWRS*KQTVVSGSSSEAEYRSL 199
CV+ L L+ W S +QT VS SS+EAEYR++
Sbjct: 1206 TSGYCVF-LGENLVSWSSKRQTTVSRSSAEAEYRAV 1240
>gb|AAN34944.1| Putative retroelement [Oryza sativa (japonica cultivar-group)]
Length = 1146
Score = 87.4 bits (215), Expect = 4e-16
Identities = 72/216 (33%), Positives = 106/216 (48%), Gaps = 24/216 (11%)
Query: 1 DIIITGSSSALMNNFISKLNLVFLLKQLG*LEHFLGIEVKSLSDGTLVLTQFRYIRDL*A 60
DI++T SS++L+ + ++L+ F + LG L FLGI V +DG L L+Q++Y DL
Sbjct: 928 DILLTASSTSLLQHITARLHSEFAMTDLGDLHFFLGISVTRSADG-LFLSQWQYAVDLLR 986
Query: 61 KVNISYGEKLQIPHNRGCSF-------------YGSIAGSLQ*LTITRPEQSYSVKKVCP 107
+ +S P + C Y S+AG+LQ LT+TRPE +Y++++VC
Sbjct: 987 RAGMSECHPTATPVDARCKLSATDGAPVSDPMEYRSLAGALQYLTLTRPEIAYAIQQVCL 1046
Query: 108 FMSSLHDSHRTAINASSTNSKAM--SLLASSQACFSRLSFIS--SWV**C*LGHGS*RSS 163
FM + H + K L A L+ S WV G R S
Sbjct: 1047 FMHDPREPHLALVKRILRYIKGTLHICLHIGTAPVDSLTAYSDADWV-----GCPDSRHS 1101
Query: 164 FYLRCVYLLRPILIFWRS*KQTVVSGSSSEAEYRSL 199
CV+ L L+ W S +QT VS SS+EAEYR++
Sbjct: 1102 TSGYCVF-LGENLVSWSSKRQTTVSRSSAEAEYRAV 1136
>emb|CAE05956.3| OSJNBb0088C09.15 [Oryza sativa (japonica cultivar-group)]
gi|32487794|emb|CAE05417.1| OSJNBa0035I04.5 [Oryza sativa
(japonica cultivar-group)]
Length = 1246
Score = 87.0 bits (214), Expect = 5e-16
Identities = 85/296 (28%), Positives = 135/296 (44%), Gaps = 33/296 (11%)
Query: 1 DIIITGSSSALMNNFISKLNLVFLLKQLG*LEHFLGIEVKSLSDGTLVLTQFRYIRDL*A 60
DII+ SS+ L+ + ++L+ F + LG L FLGI V+ D L L+Q +Y DL
Sbjct: 928 DIILMASSAELLCHITARLHTEFAMTDLGDLHFFLGISVRRTPDD-LFLSQRQYAVDLLQ 986
Query: 61 KVNISYGEKLQIPHNRGCSF-------------YGSIAGSLQ*LTITRPEQSYSVKKVCP 107
+ +S P + Y S+A +LQ LT+TRPE +Y+V++VC
Sbjct: 987 RAGMSEYHPTATPVDARAKLSASEGAPVADPTEYRSLADALQYLTLTRPEIAYAVQQVCR 1046
Query: 108 FMSSLHDSHRTAINASSTNSKAMSLLASSQACFSRLSFISSWV**C*LGHGS*RSSFYLR 167
FM H+ H + K SL A + ++++ G R S
Sbjct: 1047 FMHDPHEPHLALVKRIMRYIKG-SLSAGLHIGTGPVGSLTAYSDADWAGCPDSRRSTSGY 1105
Query: 168 CVYLLRPILIFWRS*KQTVVSGSSSEAEYRSL--GLSSCRYVKD-------PDSITWLKV 218
C++ L L+ W S +QT VS SS+EAEYR++ ++ C ++ P S T +
Sbjct: 1106 CIF-LGDNLVSWSSKRQTTVSRSSAEAEYRAVAHAIAECCCLRQLLQELHAPISTTTVVF 1164
Query: 219 VNLNTAPSIF*QVYHHFT*L*HYPTC*YYMELDILFFRKIVINRQLTAQHIPADLQ 274
+ +A + HH C ++E+DI F R+ V Q+ H+P+ Q
Sbjct: 1165 CDNVSAAYMTANPVHH--------RCTKHIEIDIHFVREKVALGQVRVLHVPSTHQ 1212
>gb|AAN06870.1| Putative gag-pol polyprotein [Oryza sativa (japonica cultivar-group)]
Length = 1247
Score = 86.7 bits (213), Expect = 7e-16
Identities = 89/302 (29%), Positives = 135/302 (44%), Gaps = 37/302 (12%)
Query: 1 DIIITGSSSALMNNFISKLNLVFLLKQLG*LEHFLGIEVKSLSDGTLVLTQFRYIRDL*A 60
DII+T S + + L F LK LG L +FLGIEV +S G +VLTQ +Y+ DL
Sbjct: 935 DIIVTSSRQEAVPALLRDLQKEFALKDLGDLHYFLGIEVTKVSGG-IVLTQDKYVNDLLR 993
Query: 61 KVN----------ISYGEKLQIPHN-----RGCSFYGSIAGSLQ*LTITRPEQSYSVKKV 105
+VN +S EKL I + Y S+ G+LQ LT+TRP+ ++ V KV
Sbjct: 994 RVNMFDCKPVSTPLSTSEKLSINEGDPLGPNDATHYRSVVGALQYLTLTRPDIAFPVNKV 1053
Query: 106 CPFMSSLHDSHRTAINASSTNSKAMSLLASSQACFSRLSFISSWV**C*LGHGS*RSSFY 165
C F+ + H A+ K + L + SR +S++ G R S
Sbjct: 1054 CQFLHAPTTHHWAAVKRILRYLKQCTRL-GLKLSKSRSMLVSAYSDADWAGSLDDRRSTG 1112
Query: 166 LRCVYLLRPILIFWRS*KQTVVSGSSSEAEYRSLGLSSCRYV----------KDPDSITW 215
V+ L L+ W + KQ VS SS+E+EY++L ++ + + S+
Sbjct: 1113 GFAVF-LGDNLVSWSARKQATVSRSSTESEYKALANATAEIMWVQTLLAELQVESPSMAK 1171
Query: 216 LKVVNLNTAPSIF*QVYHHFT*L*HYPTC*YYMELDILFFRKIVINRQLTAQHIPADLQL 275
L NL V+H T ++E+D F R+ V + L +P Q+
Sbjct: 1172 LWCDNLGAKYLSANPVFHART---------KHIEVDYHFVRERVSRKLLEIDFVPTGDQV 1222
Query: 276 AN 277
A+
Sbjct: 1223 AD 1224
>gb|AAF02855.1| Similar to retrotransposon proteins [Arabidopsis thaliana]
gi|25301689|pir||C96578 hypothetical protein T18A20.5
[imported] - Arabidopsis thaliana
Length = 1522
Score = 84.3 bits (207), Expect = 3e-15
Identities = 87/306 (28%), Positives = 147/306 (47%), Gaps = 38/306 (12%)
Query: 1 DIIITGSSSALMNNFISKLNLVFLLKQLG*LEHFLGIEVKSLSDGTLVLTQFRYIRDL*A 60
D++ITG++S + + ++ LN F +K +G + +FLGI++++ DG L ++Q +Y DL
Sbjct: 1112 DMVITGNNSQSLTHLLAALNKEFRMKDMGQVHYFLGIQIQTY-DGGLFMSQQKYAEDLLI 1170
Query: 61 KVNISYGEKLQIP--------HNR-----GCSFYGSIAGSLQ*LTITRPEQSYSVKKVC- 106
+++ + P N+ +++ S+AG LQ LT+TRP+ ++V VC
Sbjct: 1171 TASMANCSPMPTPLPLQLDRVSNQDEVFSDPTYFRSLAGKLQYLTLTRPDIQFAVNFVCQ 1230
Query: 107 ----PFMSSLHDSHR-------TAINASSTNSKAMSLLASSQACFSRLSFISSWV**C*L 155
P +S + R T NS + S++++ ++ + ++ S C
Sbjct: 1231 KMHQPSVSDFNLLKRILRYIKGTVSMGIQYNSNSSSVVSAYESDYDLSAYSDSDYANC-- 1288
Query: 156 GHGS*RSSFYLRCVYLLRPILIFWRS*KQTVVSGSSSEAEYRSLGLSSCRYVKDPDSITW 215
R S C ++ + I I W S KQ VS SS+EAEYRSL + +K SI
Sbjct: 1289 --KETRRSVGGYCTFMGQNI-ISWSSKKQPTVSRSSTEAEYRSLS-ETASEIKWMSSILR 1344
Query: 216 LKVVNLNTAPSIF*Q----VYHHFT*L*HYPTC*YYMELDILFFRKIVINRQLTAQHIPA 271
V+L P +F VY H T + ++D + R+ V + L +HIP
Sbjct: 1345 EIGVSLPDTPELFCDNLSAVYLTANPAFHART--KHFDVDHHYIRERVALKTLVVKHIPG 1402
Query: 272 DLQLAN 277
LQLA+
Sbjct: 1403 HLQLAD 1408
>gb|AAU43956.1| unknown protein [Oryza sativa (japonica cultivar-group)]
gi|52353503|gb|AAU44069.1| putative polyprotein [Oryza
sativa (japonica cultivar-group)]
Length = 1447
Score = 84.0 bits (206), Expect = 4e-15
Identities = 87/302 (28%), Positives = 136/302 (44%), Gaps = 37/302 (12%)
Query: 1 DIIITGSSSALMNNFISKLNLVFLLKQLG*LEHFLGIEVKSLSDGTLVLTQFRYIRDL*A 60
DII+T S ++ + L F LK LG L +FLGIEV ++D ++LTQ +Y DL
Sbjct: 1135 DIIVTSSRQEAVSALLQDLKKEFALKDLGDLHYFLGIEVNKVTD-EIILTQDKYACDLLR 1193
Query: 61 KVN----------ISYGEKLQIPHN-----RGCSFYGSIAGSLQ*LTITRPEQSYSVKKV 105
+VN +S EKL + Y S+ G+LQ LT+TRP+ ++ V KV
Sbjct: 1194 RVNMFDCKPVSTPLSTSEKLSAHEGDLLGPLDATNYRSVVGALQYLTLTRPDIAFPVNKV 1253
Query: 106 CPFMSSLHDSHRTAINASSTNSKAMSLLASSQACFSRLSFISSWV**C*LGHGS*RSSFY 165
C F+ + H A+ K + L + C S+ +S++ G R S
Sbjct: 1254 CQFLHAPTTVHWAAVKRILRYLKQCTKL-GLKLCKSKSMLVSAYSDADWAGSLDDRRSTG 1312
Query: 166 LRCVYLLRPILIFWRS*KQTVVSGSSSEAEYRSLGLSSCRYVKDPDSITWLKVV------ 219
V+ L L+ W + KQ VS SS+E+EY++L ++ + +T L+V
Sbjct: 1313 GFAVF-LGDNLVSWCARKQATVSRSSTESEYKALANATAEIMWVQTLLTELQVQSPPMAK 1371
Query: 220 ----NLNTAPSIF*QVYHHFT*L*HYPTC*YYMELDILFFRKIVINRQLTAQHIPADLQL 275
NL V+H T ++E+D F R+ V + L +P Q+
Sbjct: 1372 LWCDNLGAKYLSSNPVFHART---------KHIEVDYHFVRERVSQKLLEIDFVPTGDQV 1422
Query: 276 AN 277
A+
Sbjct: 1423 AD 1424
>dbj|BAC19858.1| orf490 [Oryza sativa (japonica cultivar-group)]
Length = 490
Score = 83.6 bits (205), Expect = 6e-15
Identities = 70/222 (31%), Positives = 107/222 (47%), Gaps = 18/222 (8%)
Query: 1 DIIITGSSSALMNNFISKLNLVFLLKQLG*LEHFLGIEVKSLSDGTLVLTQFRYIRDL*A 60
DII+ S + + L F LK LG L +FLGIEV + DG ++LTQ +Y DL
Sbjct: 181 DIIVASSCEKATSALLQDLKEEFALKDLGALHYFLGIEVNKVHDG-IILTQEKYATDLLK 239
Query: 61 KVNISYGEKLQIPHN---------------RGCSFYGSIAGSLQ*LTITRPEQSYSVKKV 105
+V + +++ P + + Y SI G+LQ LT+TRP+ ++ V KV
Sbjct: 240 RVGMHGCKEINTPLSTTDKLLAKEGEPLGAEDSTRYRSIVGALQYLTLTRPDIAFPVNKV 299
Query: 106 CPFMSSLHDSHRTAINASSTNSKAMSLLASSQACFSRLSFISSWV**C*LGHGS*RSSFY 165
C ++ + H TA+ K SL + C S + +S++ G R S
Sbjct: 300 CQYLHAPTSLHWTAVKRILRYLKG-SLGLGLRICKSDSTLVSAFSDADWAGCPDDRKSTG 358
Query: 166 LRCVYLLRPILIFWRS*KQTVVSGSSSEAEYRSLGLSSCRYV 207
V+ L LI W + KQ VS SS+EAEY++L ++ +
Sbjct: 359 GFAVF-LGANLISWNAWKQATVSRSSTEAEYKALANATAEII 399
>pir||H86464 hypothetical protein F12G12.9 [imported] - Arabidopsis thaliana
gi|10086468|gb|AAG12528.1| Hypothetical Protein
[Arabidopsis thaliana]
Length = 690
Score = 83.2 bits (204), Expect = 7e-15
Identities = 92/303 (30%), Positives = 139/303 (45%), Gaps = 41/303 (13%)
Query: 1 DIIITGSSSALMNNFISKLNLVFLLKQLG*LEHFLGIEVKSLSDGTLVLTQFRYIRDL*A 60
D+ ITG+SS ++N + +LN F +K +G L +FLGI+ S G L L+Q +Y+ DL
Sbjct: 333 DMAITGNSSTALSNLLDELNKQFRMKDMGKLHYFLGIQAHYHSGG-LFLSQQKYVEDLLI 391
Query: 61 KVNISYGEKLQIP--------HNRGCSF-----YGSIAGSLQ*LTITRPEQSYSVKKVC- 106
+++ + P N+ F + S+AG LQ LT+TRP+ ++V VC
Sbjct: 392 TASMADCAPMPTPLPLQLNKVPNQDEQFSDQRYFRSLAGKLQYLTLTRPDIQFAVNYVCQ 451
Query: 107 ----PFMSSLHDSHRTAINASSTNSKAMSLLASSQACFSRLSFISSWV**C*LGHGS*RS 162
P +S H R T + +S A C R S + G R
Sbjct: 452 KMHSPTVSDYHLLKRILRYVKGTTTMGIS-FAKDTDCTVRAYSDSDYG-----GCKRTRR 505
Query: 163 SFYLRCVYLLRPILIFWRS*KQTVVSGSSSEAEYRSLGLSSCRYVKDPDSITWL-KV--- 218
S C + I I W S KQ V+ SS+EAEYR+L ++ ITWL KV
Sbjct: 506 STAGFCTFFGSNI-ISWCSQKQETVARSSTEAEYRALSDAAA-------EITWLCKVLKE 557
Query: 219 --VNLNTAPSIF*QVYH--HFT*L*HYPTC*YYMELDILFFRKIVINRQLTAQHIPADLQ 274
+ L+TAP ++ + T + + E + R+ V LT +HIP+ +Q
Sbjct: 558 LQIPLHTAPELYADNLSSIYLTANPSFHKRSKHFETHYHYVRERVALGSLTVKHIPSHVQ 617
Query: 275 LAN 277
LA+
Sbjct: 618 LAD 620
>emb|CAB79576.1| putative protein [Arabidopsis thaliana] gi|3269282|emb|CAA19715.1|
putative protein [Arabidopsis thaliana]
gi|7444417|pir||T05745 hypothetical protein M4I22.20 -
Arabidopsis thaliana
Length = 1318
Score = 82.8 bits (203), Expect = 1e-14
Identities = 86/305 (28%), Positives = 134/305 (43%), Gaps = 45/305 (14%)
Query: 1 DIIITGSSSALMNNFISKLNLVFLLKQLG*LEHFLGIEVKSLSDGTLVLTQFRYIRDL*A 60
D++ITG+SS + + ++ LN F + +G L +FLGI+V+ +G L ++Q +Y DL
Sbjct: 910 DMVITGNSSQTLTSLLAALNKEFRMTDMGQLHYFLGIQVQRQQNG-LFMSQQKYAEDLLI 968
Query: 61 KVNISYGEKL---------QIPHNRGC----SFYGSIAGSLQ*LTITRPEQSYSVKKVC- 106
++ + L ++PH +++ SIAG LQ LT+TRP+ ++V VC
Sbjct: 969 AASMEHCTPLPTPLPVQLDRVPHQEELFSDPTYFRSIAGKLQYLTLTRPDIQFAVNFVCQ 1028
Query: 107 ----PFMSSLHDSHRTAINASSTNSKAMSLLASSQACFSRLSFISSWV**C*LGHGS*RS 162
P +S H R T + +S S S S W R
Sbjct: 1029 KMHQPTISDFHLLKRILRYIKGTITMGISYSRDSPTLLQAYS-DSDWG-----NCKQTRR 1082
Query: 163 SFYLRCVYLLRPILIFWRS*KQTVVSGSSSEAEYRSLGLSSCRYVKDPDSITWLKV---- 218
S C + + L+ W S K VS SS+EAEY+SL ++ I WL
Sbjct: 1083 SVGGLCTF-MGTNLVSWSSKKHPTVSRSSTEAEYKSLSDAA-------SEILWLSTLLRE 1134
Query: 219 --VNLNTAPSIF*Q----VYHHFT*L*HYPTC*YYMELDILFFRKIVINRQLTAQHIPAD 272
+ L P +F VY H T + ++D F R+ V + L +HIP
Sbjct: 1135 LRIPLPDTPELFCDNLSAVYLTANPAFHART--KHFDIDFHFVRERVALKALVVKHIPGS 1192
Query: 273 LQLAN 277
Q+A+
Sbjct: 1193 EQIAD 1197
>gb|AAV24907.1| hypothetical protein [Oryza sativa (japonica cultivar-group)]
gi|51854440|gb|AAU10819.1| putative polyprotein [Oryza
sativa (japonica cultivar-group)]
Length = 1679
Score = 81.3 bits (199), Expect = 3e-14
Identities = 89/304 (29%), Positives = 137/304 (44%), Gaps = 43/304 (14%)
Query: 1 DIIITGSSSALMNNFISKLNLVFLLKQLG*LEHFLGIEVKSLSDGTLVLTQFRYIRDL*A 60
DI++T SS L++ IS L F +K LG L HFLG+ V S G LVL+Q +Y D+
Sbjct: 1371 DIVLTASSRTLLHWTISALQGEFSMKDLGALHHFLGVSVTRNSAG-LVLSQRQYCIDILE 1429
Query: 61 KVNISYGEKLQIPHNRGCSF-------------YGSIAGSLQ*LTITRPEQSYSVKKVCP 107
+ ++ + P + + S+AG+LQ LT TRP+ SY+V++VC
Sbjct: 1430 RAGMADCKPCNTPVDTTAKLSSSDGPPVADPTDFRSLAGALQYLTFTRPDISYAVQQVCL 1489
Query: 108 FMSSLHDSHRTAINA---SSTNSKAMSL-LASSQACFSRLSFISSWV**C*LGHGS*RSS 163
M + H A+ S + L + S AC + + W G R S
Sbjct: 1490 HMHDPREPHLAALKRILHYIRGSVDLGLHIQRSSACDLAVYSDADWA-----GCPDTRRS 1544
Query: 164 FYLRCVYLLRPILIFWRS*KQTVVSGSSSEAEYRSLGLSSCRYVKDPDSITWLK--VVNL 221
V+ L L+ W S +Q VS SS+EAEYR++ + +TWL+ + L
Sbjct: 1545 TSGYAVF-LGDNLVSWSSKRQHTVSRSSAEAEYRAVANAVA-------EVTWLRQLLQEL 1596
Query: 222 NTAPS--------IF*QVYHHFT*L*HYPTC*YYMELDILFFRKIVINRQLTAQHIPADL 273
++ PS VY + H T ++E+D+ F R+ V + H+P
Sbjct: 1597 HSPPSRATLVYCDNVSAVYLSSNPVQHQRT--KHVEIDLHFVRERVAVGAVRVLHVPTTS 1654
Query: 274 QLAN 277
Q A+
Sbjct: 1655 QYAD 1658
>gb|AAP20859.1| retrotransposon protein, putative, Ty1-copia sub-class [Oryza
sativa (japonica cultivar-group)]
Length = 352
Score = 80.9 bits (198), Expect = 4e-14
Identities = 84/302 (27%), Positives = 133/302 (43%), Gaps = 37/302 (12%)
Query: 1 DIIITGSSSALMNNFISKLNLVFLLKQLG*LEHFLGIEVKSLSDGTLVLTQFRYIRDL*A 60
DII+ S ++ + L F LK LG L +FLGIEV + G L ++Q +Y DL
Sbjct: 34 DIIVVSSRKEAVSALLQDLQKEFALKDLGDLHYFLGIEVTKIPGGIL-MSQEKYASDLLK 92
Query: 61 KVNISYGEKLQIPHNRG---------------CSFYGSIAGSLQ*LTITRPEQSYSVKKV 105
+VN+S + + P + + Y SI G+LQ LT+TR + ++SV KV
Sbjct: 93 RVNMSDCKSVATPLSASEKLIAGKGTILGPNDATQYRSIVGALQYLTLTRLDIAFSVNKV 152
Query: 106 CPFMSSLHDSHRTAINASSTNSKAMSLLASSQACFSRLSFISSWV**C*LGHGS*RSSFY 165
C F+ + H A+ K + L + C S +S + G R S
Sbjct: 153 CQFLHNPTTEHWAAVKRILRYIKQCTGL-GLRICKSSSMIVSGYSDADWAGCLDDRRSTG 211
Query: 166 LRCVYLLRPILIFWRS*KQTVVSGSSSEAEYRSLGLSSCRYVKDPDSITWLKVV------ 219
VY L L+ W + KQ VS SS+EAEY++L ++ + + L +V
Sbjct: 212 GFAVY-LGDNLVSWNAKKQATVSRSSTEAEYKALANATAEIMWVQTLLQELNIVSPAMAQ 270
Query: 220 ----NLNTAPSIF*QVYHHFT*L*HYPTC*YYMELDILFFRKIVINRQLTAQHIPADLQL 275
N+ F V+H T ++E+D F R+ V + L ++ + Q+
Sbjct: 271 LWCDNMGAKYLSFNPVFHART---------KHIEVDYHFVRERVARKLLQVDYVSTNDQV 321
Query: 276 AN 277
A+
Sbjct: 322 AD 323
>gb|AAT85031.1| putative polyprotein [Oryza sativa (japonica cultivar-group)]
Length = 1437
Score = 80.9 bits (198), Expect = 4e-14
Identities = 84/302 (27%), Positives = 133/302 (43%), Gaps = 37/302 (12%)
Query: 1 DIIITGSSSALMNNFISKLNLVFLLKQLG*LEHFLGIEVKSLSDGTLVLTQFRYIRDL*A 60
DII+ S ++ + L F LK LG L +FLGIEV + G L ++Q +Y DL
Sbjct: 1119 DIIVVSSRKEAVSALLQDLQKEFALKDLGDLHYFLGIEVTKIPGGIL-MSQEKYASDLLK 1177
Query: 61 KVNISYGEKLQIPHNRG---------------CSFYGSIAGSLQ*LTITRPEQSYSVKKV 105
+VN+S + + P + + Y SI G+LQ LT+TR + ++SV KV
Sbjct: 1178 RVNMSDCKSVATPLSASEKLIAGKGTILGPNDATQYRSIVGALQYLTLTRLDIAFSVNKV 1237
Query: 106 CPFMSSLHDSHRTAINASSTNSKAMSLLASSQACFSRLSFISSWV**C*LGHGS*RSSFY 165
C F+ + H A+ K + L + C S +S + G R S
Sbjct: 1238 CQFLHNPTTEHWAAVKRILRYIKQCTGL-GLRICKSSSMIVSGYSDADWAGCLDDRRSTG 1296
Query: 166 LRCVYLLRPILIFWRS*KQTVVSGSSSEAEYRSLGLSSCRYVKDPDSITWLKVV------ 219
VY L L+ W + KQ VS SS+EAEY++L ++ + + L +V
Sbjct: 1297 GFAVY-LGDNLVSWNAKKQATVSRSSTEAEYKALANATAEIMWVQTLLQELNIVSPAMAQ 1355
Query: 220 ----NLNTAPSIF*QVYHHFT*L*HYPTC*YYMELDILFFRKIVINRQLTAQHIPADLQL 275
N+ F V+H T ++E+D F R+ V + L ++ + Q+
Sbjct: 1356 LWCDNMGAKYLSFNPVFHART---------KHIEVDYHFVRERVARKLLQVDYVSTNDQV 1406
Query: 276 AN 277
A+
Sbjct: 1407 AD 1408
Database: nr
Posted date: Jul 5, 2005 12:34 AM
Number of letters in database: 863,360,394
Number of sequences in database: 2,540,612
Lambda K H
0.348 0.152 0.497
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 379,081,434
Number of Sequences: 2540612
Number of extensions: 12614682
Number of successful extensions: 40859
Number of sequences better than 10.0: 507
Number of HSP's better than 10.0 without gapping: 267
Number of HSP's successfully gapped in prelim test: 240
Number of HSP's that attempted gapping in prelim test: 39849
Number of HSP's gapped (non-prelim): 862
length of query: 277
length of database: 863,360,394
effective HSP length: 126
effective length of query: 151
effective length of database: 543,243,282
effective search space: 82029735582
effective search space used: 82029735582
T: 11
A: 40
X1: 14 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 38 (21.8 bits)
S2: 74 (33.1 bits)
Lotus: description of TM0229.10