BLAST2 result
BLASTP 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TM0223.17
(88 letters)
Database: nr
2,540,612 sequences; 863,360,394 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
emb|CAE03097.2| OSJNBa0017B10.12 [Oryza sativa (japonica cultiva... 70 1e-11
ref|XP_471573.1| OSJNBb0032D24.14 [Oryza sativa (japonica cultiv... 68 5e-11
ref|NP_918744.1| B1039D07.21 [Oryza sativa (japonica cultivar-gr... 66 2e-10
gb|AAP53718.1| hypothetical protein [Oryza sativa (japonica cult... 65 3e-10
emb|CAE01961.2| OSJNBa0085H03.2 [Oryza sativa (japonica cultivar... 62 3e-09
ref|XP_468825.1| hypothetical protein [Oryza sativa (japonica cu... 62 4e-09
gb|AAV44104.1| hypothetical protein [Oryza sativa (japonica cult... 60 1e-08
ref|NP_915242.1| P0703B11.15 [Oryza sativa (japonica cultivar-gr... 59 4e-08
ref|NP_680314.1| hypothetical protein [Arabidopsis thaliana] 59 4e-08
ref|NP_914398.1| P0020E09.11 [Oryza sativa (japonica cultivar-gr... 58 5e-08
ref|NP_910604.1| ribosomal protein-like [Oryza sativa (japonica ... 58 5e-08
ref|NP_175024.1| hypothetical protein [Arabidopsis thaliana] 58 5e-08
gb|AAL79730.1| putative ribosomal protein [Oryza sativa] 57 1e-07
gb|AAX96400.1| transposon protein, putative, ping/pong/SNOOPY su... 57 1e-07
dbj|BAA85461.1| ORF-c [Brassica rapa] 56 3e-07
ref|XP_463497.1| P0491F11.14 [Oryza sativa (japonica cultivar-gr... 55 3e-07
gb|AAG51231.1| unknown protein; 65731-67017 [Arabidopsis thalian... 55 4e-07
ref|XP_470831.1| hypothetical protein [Oryza sativa (japonica cu... 55 4e-07
ref|XP_462951.1| Conserved hypothetical protein [Oryza sativa] g... 53 2e-06
ref|XP_550394.1| ribosomal protein -like [Oryza sativa (japonica... 52 5e-06
>emb|CAE03097.2| OSJNBa0017B10.12 [Oryza sativa (japonica cultivar-group)]
gi|50927987|ref|XP_473521.1| OSJNBa0017B10.12 [Oryza
sativa (japonica cultivar-group)]
Length = 454
Score = 70.1 bits (170), Expect = 1e-11
Identities = 35/77 (45%), Positives = 48/77 (61%), Gaps = 2/77 (2%)
Query: 6 QILYACIILHNMIVEDEREGYNG--NFVYDQVDNDIITAEVSNGPIPSFATFLERRGHMS 63
+I+YACIILHNMIVEDER+ Y G +F Y+Q + + GPI F LE +
Sbjct: 368 EIMYACIILHNMIVEDERDSYEGRADFNYEQGSSPVPLNGYGQGPIHGFDRVLEIGVAIR 427
Query: 64 QREIHRQLQADLVEHIW 80
+++H +L+ DL EHIW
Sbjct: 428 NKDMHHRLKNDLTEHIW 444
>ref|XP_471573.1| OSJNBb0032D24.14 [Oryza sativa (japonica cultivar-group)]
gi|38344363|emb|CAE04084.2| OSJNBb0032D24.14 [Oryza
sativa (japonica cultivar-group)]
Length = 450
Score = 68.2 bits (165), Expect = 5e-11
Identities = 34/77 (44%), Positives = 48/77 (62%), Gaps = 2/77 (2%)
Query: 7 ILYACIILHNMIVEDEREGYN--GNFVYDQVDNDIITAEVSNGPIPSFATFLERRGHMSQ 64
I+YACIILHNMIVEDER Y+ + Y+Q + +GPI F LE+ +
Sbjct: 367 IMYACIILHNMIVEDERGSYDIPDDNTYEQGQYYPQMTGLDHGPIYGFQEVLEQNKAIHD 426
Query: 65 REIHRQLQADLVEHIWE 81
R+ HR+L+ DL+EH+W+
Sbjct: 427 RQTHRRLKGDLIEHVWQ 443
>ref|NP_918744.1| B1039D07.21 [Oryza sativa (japonica cultivar-group)]
Length = 238
Score = 66.2 bits (160), Expect = 2e-10
Identities = 38/90 (42%), Positives = 53/90 (58%), Gaps = 8/90 (8%)
Query: 5 MQILYACIILHNMIVEDEREGYNGNFVYDQVDND----IITAEV--SNGPIPSFATFLER 58
+ I+ AC+ILHNMIVEDE++ V D +N +I EV ++ P PSFA L R
Sbjct: 151 INIMQACVILHNMIVEDEKDSVRD--VLDLNENPSATIVIPPEVRTNDDPNPSFAEALRR 208
Query: 59 RGHMSQREIHRQLQADLVEHIWELSESRNN 88
+ R HRQL+ DL+EHIW+ ++ N
Sbjct: 209 NSAIKARPTHRQLKKDLIEHIWQRYGNKEN 238
>gb|AAP53718.1| hypothetical protein [Oryza sativa (japonica cultivar-group)]
gi|37534258|ref|NP_921431.1| hypothetical protein [Oryza
sativa (japonica cultivar-group)]
Length = 296
Score = 65.5 bits (158), Expect = 3e-10
Identities = 32/77 (41%), Positives = 52/77 (66%), Gaps = 3/77 (3%)
Query: 7 ILYACIILHNMIVEDEREGYN--GNFVYDQVDNDIITAEVSNGPIPSFATFLERRGHMSQ 64
I+YAC+ILHNMIVE+ER Y+ + Y+Q + +T + +GP+ F+ LE+ +
Sbjct: 212 IMYACVILHNMIVENERGIYDIPDDNTYEQGHSPHLTG-LDHGPVHGFSEVLEKDMEIRD 270
Query: 65 REIHRQLQADLVEHIWE 81
++ HR+L+ DL+EHIW+
Sbjct: 271 QQAHRRLKEDLIEHIWQ 287
>emb|CAE01961.2| OSJNBa0085H03.2 [Oryza sativa (japonica cultivar-group)]
gi|50924250|ref|XP_472485.1| OSJNBa0085H03.2 [Oryza
sativa (japonica cultivar-group)]
Length = 440
Score = 62.4 bits (150), Expect = 3e-09
Identities = 31/81 (38%), Positives = 50/81 (61%), Gaps = 2/81 (2%)
Query: 7 ILYACIILHNMIVEDEREGYNGNFVYDQVDNDIITAE-VSNGPIPSFATFLERRGHMSQR 65
I+ AC+I+HNMI+++ER+ N +F YDQ D++++ E P FL+ + R
Sbjct: 361 IMTACVIMHNMIIDNERDE-NVDFDYDQEDSEVLRKEEYQRRNKPVLEKFLKIHKEIEDR 419
Query: 66 EIHRQLQADLVEHIWELSESR 86
+H QL+ DL+EH+W L +R
Sbjct: 420 RVHEQLRDDLMEHLWALHGAR 440
>ref|XP_468825.1| hypothetical protein [Oryza sativa (japonica cultivar-group)]
gi|41469541|gb|AAS07307.1| hypothetical protein [Oryza
sativa (japonica cultivar-group)]
Length = 235
Score = 62.0 bits (149), Expect = 4e-09
Identities = 29/76 (38%), Positives = 44/76 (57%), Gaps = 3/76 (3%)
Query: 6 QILYACIILHNMIVEDEREGYNGNFVYDQVDNDIITAEVSNGPIPSFATFLERRGHMSQR 65
+I+ ACIILHNMIVEDE++ ++ YD + PI F++ ++ R
Sbjct: 158 EIMIACIILHNMIVEDEKDDEGLDYNYDDEGERVTPLHT---PIAELQDFIQNHHNIRNR 214
Query: 66 EIHRQLQADLVEHIWE 81
+ H QLQ DLV+H+W+
Sbjct: 215 QTHSQLQEDLVDHLWQ 230
>gb|AAV44104.1| hypothetical protein [Oryza sativa (japonica cultivar-group)]
gi|55167955|gb|AAV43824.1| hypothetical protein [Oryza
sativa (japonica cultivar-group)]
Length = 444
Score = 60.5 bits (145), Expect = 1e-08
Identities = 30/75 (40%), Positives = 45/75 (60%), Gaps = 2/75 (2%)
Query: 8 LYACIILHNMIVEDEREGYNGNFVYDQVDND--IITAEVSNGPIPSFATFLERRGHMSQR 65
+ AC+ILHNMIVEDE E + +++ ++ EV++G P F L R+ + R
Sbjct: 361 MLACVILHNMIVEDEGEDAICDLDLNRIPRTSIVLPPEVTSGGNPCFRDVLSRKAAIRAR 420
Query: 66 EIHRQLQADLVEHIW 80
+H QL+ DL+EHIW
Sbjct: 421 SMHTQLKTDLIEHIW 435
>ref|NP_915242.1| P0703B11.15 [Oryza sativa (japonica cultivar-group)]
Length = 401
Score = 58.5 bits (140), Expect = 4e-08
Identities = 34/92 (36%), Positives = 51/92 (54%), Gaps = 14/92 (15%)
Query: 6 QILYACIILHNMIVEDEREGYNGNFVYDQVDND-------IITAEVSNGPI--PSFATFL 56
+I+ AC+ILHNMIVEDE G D +D + ++ EV G PSF+
Sbjct: 314 KIMQACVILHNMIVEDE-----GEMAEDPIDLNAAPGTSIVLPPEVHAGSNDHPSFSDVR 368
Query: 57 ERRGHMSQREIHRQLQADLVEHIWELSESRNN 88
R ++ + IH QL+ DL+E+IW+ ++R N
Sbjct: 369 RRNAYIRAKPIHSQLKNDLIEYIWQRFQTRQN 400
>ref|NP_680314.1| hypothetical protein [Arabidopsis thaliana]
Length = 311
Score = 58.5 bits (140), Expect = 4e-08
Identities = 36/85 (42%), Positives = 45/85 (52%), Gaps = 15/85 (17%)
Query: 7 ILYACIILHNMIVEDEREGYN----GNFVY------DQVDNDIITAEVSNGPIPSFATFL 56
I+ ACIILHNMIVEDER+GY FV+ QVD T SN +
Sbjct: 229 IMRACIILHNMIVEDERDGYTQFDVSEFVHPESASSSQVDFTYATDMPSN-----LGNMM 283
Query: 57 ERRGHMSQREIHRQLQADLVEHIWE 81
R + R H +L+ADLVEH+W+
Sbjct: 284 ATRARVRDRIKHEELKADLVEHVWQ 308
>ref|NP_914398.1| P0020E09.11 [Oryza sativa (japonica cultivar-group)]
gi|28564717|dbj|BAC57632.1| ribosomal protein-like
[Oryza sativa (japonica cultivar-group)]
Length = 282
Score = 58.2 bits (139), Expect = 5e-08
Identities = 30/77 (38%), Positives = 45/77 (57%), Gaps = 2/77 (2%)
Query: 6 QILYACIILHNMIVEDEREGYNGNFVYDQVDND--IITAEVSNGPIPSFATFLERRGHMS 63
+I+ AC+IL NMIVEDERE + +++ ++ EV++G P F L R+ +
Sbjct: 165 KIMLACVILPNMIVEDEREDAICDIDLNRIPRTSIVLPPEVTSGDNPCFTDVLRRKSAIR 224
Query: 64 QREIHRQLQADLVEHIW 80
+H QL DL+EHIW
Sbjct: 225 ACSVHTQLITDLIEHIW 241
>ref|NP_910604.1| ribosomal protein-like [Oryza sativa (japonica cultivar-group)]
gi|27260955|dbj|BAC45073.1| ribosomal protein-like
[Oryza sativa (japonica cultivar-group)]
Length = 428
Score = 58.2 bits (139), Expect = 5e-08
Identities = 28/78 (35%), Positives = 46/78 (58%), Gaps = 2/78 (2%)
Query: 6 QILYACIILHNMIVEDEREGYNGNFVYDQVDND--IITAEVSNGPIPSFATFLERRGHMS 63
+I+ ACIILHNM +EDE++ + F D++ +I ++++ P SF L R +
Sbjct: 343 KIMQACIILHNMTIEDEKDMASACFDPDEISGTLAVILSDINTVPADSFTEVLHRNASVC 402
Query: 64 QREIHRQLQADLVEHIWE 81
H +L+ DL+EHIW+
Sbjct: 403 APPKHTRLRRDLMEHIWQ 420
>ref|NP_175024.1| hypothetical protein [Arabidopsis thaliana]
Length = 168
Score = 58.2 bits (139), Expect = 5e-08
Identities = 37/85 (43%), Positives = 43/85 (50%), Gaps = 15/85 (17%)
Query: 7 ILYACIILHNMIVEDEREGYNGNFVYD----------QVDNDIITAEVSNGPIPSFATFL 56
I+ ACIILHNMIVEDER+GY V D QVD T SN +
Sbjct: 82 IMRACIILHNMIVEDERDGYTQYDVSDFAHPESASSSQVDFTYSTDMPSN-----LGNMM 136
Query: 57 ERRGHMSQREIHRQLQADLVEHIWE 81
R + R H L+ADLVEHIW+
Sbjct: 137 ATRTRLRDRTKHEHLKADLVEHIWQ 161
>gb|AAL79730.1| putative ribosomal protein [Oryza sativa]
Length = 915
Score = 57.0 bits (136), Expect = 1e-07
Identities = 32/83 (38%), Positives = 44/83 (52%), Gaps = 8/83 (9%)
Query: 5 MQILYACIILHNMIVEDEREGYNGNFVYDQVDNDIIT------AEVSNGPIPSFATFLER 58
+ I+ AC+ILHNMIVEDE++ D +N T + ++ P P F L R
Sbjct: 828 VNIMQACVILHNMIVEDEKDLVK--IPLDLNENPSATIVLPPEVQTNDNPNPCFVDVLNR 885
Query: 59 RGHMSQREIHRQLQADLVEHIWE 81
+ HRQL+ DLVEHIW+
Sbjct: 886 NSAIRAASTHRQLKNDLVEHIWQ 908
>gb|AAX96400.1| transposon protein, putative, ping/pong/SNOOPY sub-class [Oryza
sativa (japonica cultivar-group)]
Length = 454
Score = 57.0 bits (136), Expect = 1e-07
Identities = 27/79 (34%), Positives = 48/79 (60%), Gaps = 2/79 (2%)
Query: 5 MQILYACIILHNMIVEDEREGYNGNFVYDQVDND--IITAEVSNGPIPSFATFLERRGHM 62
++I+ ACIILHNM VEDE++ + F D++ ++ ++++ P +A + R +
Sbjct: 368 VKIMQACIILHNMTVEDEKDMGSSCFDSDEILGTLAVLLSDINTVPAGCYAEVVRRNASV 427
Query: 63 SQREIHRQLQADLVEHIWE 81
+ H QL+ DL+EHIW+
Sbjct: 428 CAQPTHAQLRRDLMEHIWQ 446
>dbj|BAA85461.1| ORF-c [Brassica rapa]
Length = 190
Score = 55.8 bits (133), Expect = 3e-07
Identities = 33/79 (41%), Positives = 48/79 (59%), Gaps = 5/79 (6%)
Query: 7 ILYACIILHNMIVEDEREGYNG-NFVYDQVDNDIITAEVS---NGPIPS-FATFLERRGH 61
I+ CIILHNMIVEDER+GY N Q D ++ V + +PS A + R
Sbjct: 102 IMRVCIILHNMIVEDERDGYTHLNVSEFQHGEDAGSSHVDLTYSTDMPSNIANMMGVRTR 161
Query: 62 MSQREIHRQLQADLVEHIW 80
+ +++H++L+ADL+EHIW
Sbjct: 162 IRDKQMHQRLKADLIEHIW 180
>ref|XP_463497.1| P0491F11.14 [Oryza sativa (japonica cultivar-group)]
gi|20146500|dbj|BAB89279.1| ribosomal protein-like
[Oryza sativa (japonica cultivar-group)]
gi|19571128|dbj|BAB86552.1| simiar to ribosomal protein
[Oryza sativa (japonica cultivar-group)]
Length = 310
Score = 55.5 bits (132), Expect = 3e-07
Identities = 33/79 (41%), Positives = 44/79 (54%), Gaps = 6/79 (7%)
Query: 6 QILYACIILHNMIVEDEREGYNGNFVYDQVDND----IITAEVSNGPIPSFATFLERRGH 61
+I+ AC+ILHNMIVEDERE D +N + EV+ G FA + ++
Sbjct: 225 RIMLACVILHNMIVEDERE--EATIHIDLNENPGASFALPPEVNIGGNLCFADVMRKKAT 282
Query: 62 MSQREIHRQLQADLVEHIW 80
+ R H QL+ DLVEHIW
Sbjct: 283 VRSRPQHTQLKNDLVEHIW 301
>gb|AAG51231.1| unknown protein; 65731-67017 [Arabidopsis thaliana]
gi|25405095|pir||G96496 unknown protein, 65731-67017
[imported] - Arabidopsis thaliana
Length = 333
Score = 55.1 bits (131), Expect = 4e-07
Identities = 34/85 (40%), Positives = 44/85 (51%), Gaps = 15/85 (17%)
Query: 7 ILYACIILHNMIVEDEREGYN----GNFVY------DQVDNDIITAEVSNGPIPSFATFL 56
I+ ACIILHNMIVED+R+GY FV+ QVD T SN +
Sbjct: 247 IMRACIILHNMIVEDKRDGYTQFDVSEFVHPESASSSQVDFTYATVMPSN-----LGNMM 301
Query: 57 ERRGHMSQREIHRQLQADLVEHIWE 81
+ R H +L+ADLVEH+W+
Sbjct: 302 ATGARVRDRIKHEELKADLVEHVWQ 326
>ref|XP_470831.1| hypothetical protein [Oryza sativa (japonica cultivar-group)]
gi|29824487|gb|AAP04202.1| hypothetical protein [Oryza
sativa (japonica cultivar-group)]
Length = 626
Score = 55.1 bits (131), Expect = 4e-07
Identities = 34/83 (40%), Positives = 44/83 (52%), Gaps = 8/83 (9%)
Query: 5 MQILYACIILHNMIVEDEREGYNGNFVYDQVDND----IITAEVSNG--PIPSFATFLER 58
+ I+ AC+IL NMIVEDE+E D +N ++ EV N P P FA L R
Sbjct: 541 INIMEACVILRNMIVEDEQE--MAEIPLDLNENPGASFVLPPEVRNSSDPNPCFAAVLRR 598
Query: 59 RGHMSQREIHRQLQADLVEHIWE 81
+ R H QL+ DLV HIW+
Sbjct: 599 NSSIRDRAKHMQLKKDLVAHIWQ 621
>ref|XP_462951.1| Conserved hypothetical protein [Oryza sativa]
gi|14091856|gb|AAK53859.1| Conserved hypothetical
protein [Oryza sativa]
Length = 377
Score = 52.8 bits (125), Expect = 2e-06
Identities = 27/83 (32%), Positives = 50/83 (59%), Gaps = 2/83 (2%)
Query: 7 ILYACIILHNMIVEDEREGYNGNFVYDQVDNDIITAE-VSNGPIPSFATFLERRGHMSQR 65
I+ AC+I+HNMI+++ER+ + +F YDQ D++++ E FL+ + +
Sbjct: 188 IMIACVIMHNMIIDNERD-EDVDFDYDQGDSEVLRKEDYQRRDKHVLEKFLKIHKEIEDQ 246
Query: 66 EIHRQLQADLVEHIWELSESRNN 88
+ H QL+ DLV+++W L +R +
Sbjct: 247 QAHEQLRDDLVKYLWALHGARGH 269
>ref|XP_550394.1| ribosomal protein -like [Oryza sativa (japonica cultivar-group)]
gi|55296301|dbj|BAD68081.1| ribosomal protein -like
[Oryza sativa (japonica cultivar-group)]
gi|55296123|dbj|BAD67842.1| ribosomal protein -like
[Oryza sativa (japonica cultivar-group)]
Length = 428
Score = 51.6 bits (122), Expect = 5e-06
Identities = 28/75 (37%), Positives = 41/75 (54%), Gaps = 4/75 (5%)
Query: 7 ILYACIILHNMIVEDEREGYNGNFVYDQVDNDIITAEVSNGPIPSFATFLERRGHMSQRE 66
I+ AC+I+HNMI+EDE E + +N VS+ IP F++ + E
Sbjct: 352 IMKACVIMHNMIIEDEGEVDWEERFPEGGEN----VRVSHDEIPDLDDFIQMHKKIRDDE 407
Query: 67 IHRQLQADLVEHIWE 81
H QL+ DLVEH+W+
Sbjct: 408 THYQLREDLVEHLWQ 422
Database: nr
Posted date: Jul 5, 2005 12:34 AM
Number of letters in database: 863,360,394
Number of sequences in database: 2,540,612
Lambda K H
0.327 0.141 0.432
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 138,675,140
Number of Sequences: 2540612
Number of extensions: 4694981
Number of successful extensions: 14169
Number of sequences better than 10.0: 61
Number of HSP's better than 10.0 without gapping: 57
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 14081
Number of HSP's gapped (non-prelim): 61
length of query: 88
length of database: 863,360,394
effective HSP length: 64
effective length of query: 24
effective length of database: 700,761,226
effective search space: 16818269424
effective search space used: 16818269424
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 68 (30.8 bits)
Lotus: description of TM0223.17