BLAST2 result
BLASTP 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TM0215b.3
(66 letters)
Database: nr
2,540,612 sequences; 863,360,394 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAF32455.1| unknown protein [Arabidopsis thaliana] gi|1865534... 86 3e-16
gb|AAM65256.1| pollen coat-like protein [Arabidopsis thaliana] 85 4e-16
dbj|BAB10133.1| pollen coat protein-like [Arabidopsis thaliana] ... 84 1e-15
emb|CAA63531.1| pollen coat protein [Brassica oleracea] gi|74885... 82 4e-15
emb|CAA10234.1| ABA-inducible protein [Fagus sylvatica] 82 5e-15
gb|AAC98699.1| pollen coat protein homolog [Brassica rapa] gi|74... 80 1e-14
gb|AAM64439.1| ABA-inducible protein-like protein [Arabidopsis t... 79 4e-14
dbj|BAB09554.1| ABA-inducible protein-like [Arabidopsis thaliana... 77 1e-13
gb|AAG13408.1| BN28b [Brassica napus] 53 2e-06
pir||T08087 cold-induced protein kin1 - rape gi|167146|gb|AAA329... 52 3e-06
gb|AAG13407.1| BN28a [Brassica napus] 52 4e-06
emb|CAC01796.1| cold-regulated protein COR6.6 (KIN2) [Arabidopsi... 51 9e-06
emb|CAC01795.1| cold and ABA inducible protein kin1 [Arabidopsis... 48 8e-05
emb|CAA12027.1| LEA PROTEIN [Cicer arietinum] gi|24418489|sp|O49... 48 8e-05
gb|AAD30864.1| seed maturation protein PM30 [Glycine max] 47 2e-04
pir||S34660 probable cold-regulated protein kin1 - turnip gi|395... 47 2e-04
gb|AAM62981.1| unknown [Arabidopsis thaliana] 46 2e-04
emb|CAA12026.1| LEA protein [Cicer arietinum] gi|24418488|sp|O49... 46 2e-04
ref|NP_564613.1| late embryogenesis abundant protein-related / L... 46 2e-04
emb|CAB40135.1| cold shock protein [Camelina sativa] 46 3e-04
>gb|AAF32455.1| unknown protein [Arabidopsis thaliana] gi|18655343|gb|AAL76127.1|
AT3g02480/F16B3_11 [Arabidopsis thaliana]
gi|14335128|gb|AAK59844.1| AT3g02480/F16B3_11
[Arabidopsis thaliana] gi|18396202|ref|NP_566173.1|
ABA-responsive protein-related [Arabidopsis thaliana]
Length = 68
Score = 85.5 bits (210), Expect = 3e-16
Identities = 43/66 (65%), Positives = 48/66 (72%)
Query: 1 MDQSQNLSHQAGQATGQAQEKASNMMGNARNAAQSAQQSCQEAGQQMKAKAQGAADAVKS 60
MD QN S+QAGQATGQ +EKA MM A++AA SAQ S Q+ GQQMK KAQGAAD VK
Sbjct: 1 MDNKQNASYQAGQATGQTKEKAGGMMDKAKDAAASAQDSLQQTGQQMKEKAQGAADVVKD 60
Query: 61 AIGANK 66
G NK
Sbjct: 61 KTGMNK 66
>gb|AAM65256.1| pollen coat-like protein [Arabidopsis thaliana]
Length = 67
Score = 85.1 bits (209), Expect = 4e-16
Identities = 43/63 (68%), Positives = 50/63 (79%)
Query: 4 SQNLSHQAGQATGQAQEKASNMMGNARNAAQSAQQSCQEAGQQMKAKAQGAADAVKSAIG 63
SQN+S QAGQA GQ QEKAS MM A NAAQSA++S QE GQQ+K KAQGA ++VK+A G
Sbjct: 5 SQNISFQAGQAKGQTQEKASTMMDKASNAAQSAKESLQETGQQIKEKAQGATESVKNATG 64
Query: 64 ANK 66
NK
Sbjct: 65 MNK 67
>dbj|BAB10133.1| pollen coat protein-like [Arabidopsis thaliana]
gi|15240998|ref|NP_198692.1| expressed protein
[Arabidopsis thaliana]
Length = 67
Score = 83.6 bits (205), Expect = 1e-15
Identities = 42/63 (66%), Positives = 50/63 (78%)
Query: 4 SQNLSHQAGQATGQAQEKASNMMGNARNAAQSAQQSCQEAGQQMKAKAQGAADAVKSAIG 63
SQN+S QAGQA GQ QEKAS MM A NAAQSA++S +E GQQ+K KAQGA ++VK+A G
Sbjct: 5 SQNISFQAGQAKGQTQEKASTMMDKASNAAQSAKESLKETGQQIKEKAQGATESVKNATG 64
Query: 64 ANK 66
NK
Sbjct: 65 MNK 67
>emb|CAA63531.1| pollen coat protein [Brassica oleracea] gi|7488569|pir||T14467
pollen coat protein - wild cabbage
Length = 67
Score = 82.0 bits (201), Expect = 4e-15
Identities = 40/65 (61%), Positives = 50/65 (76%)
Query: 2 DQSQNLSHQAGQATGQAQEKASNMMGNARNAAQSAQQSCQEAGQQMKAKAQGAADAVKSA 61
+ SQ++S AGQA GQ QEKASN+M A NAAQSA++S QE GQQ+K KAQGA++A+K
Sbjct: 3 NNSQSMSFNAGQAKGQTQEKASNLMDKASNAAQSAKESLQEGGQQLKQKAQGASEAIKEK 62
Query: 62 IGANK 66
G NK
Sbjct: 63 TGLNK 67
>emb|CAA10234.1| ABA-inducible protein [Fagus sylvatica]
Length = 68
Score = 81.6 bits (200), Expect = 5e-15
Identities = 40/63 (63%), Positives = 49/63 (77%)
Query: 1 MDQSQNLSHQAGQATGQAQEKASNMMGNARNAAQSAQQSCQEAGQQMKAKAQGAADAVKS 60
MD+SQN QAGQA GQ QEKASN+M A NA QSA+++C EAG+Q+ AKAQGAA+ K
Sbjct: 1 MDKSQNTCFQAGQAKGQTQEKASNLMEKAGNAGQSAKETCLEAGKQVPAKAQGAANTAKD 60
Query: 61 AIG 63
A+G
Sbjct: 61 AVG 63
>gb|AAC98699.1| pollen coat protein homolog [Brassica rapa]
gi|7488528|pir||T14410 pollen coat protein homolog -
turnip
Length = 67
Score = 80.1 bits (196), Expect = 1e-14
Identities = 40/65 (61%), Positives = 47/65 (71%)
Query: 2 DQSQNLSHQAGQATGQAQEKASNMMGNARNAAQSAQQSCQEAGQQMKAKAQGAADAVKSA 61
+ SQN S AGQA GQ QEKASN+M A NAAQSA++S E GQQ+K KAQGA +A+K
Sbjct: 3 NNSQNWSFNAGQAKGQTQEKASNLMDKASNAAQSAKESLSEGGQQLKQKAQGATEAIKEK 62
Query: 62 IGANK 66
G NK
Sbjct: 63 TGLNK 67
>gb|AAM64439.1| ABA-inducible protein-like protein [Arabidopsis thaliana]
Length = 67
Score = 78.6 bits (192), Expect = 4e-14
Identities = 38/65 (58%), Positives = 49/65 (74%)
Query: 2 DQSQNLSHQAGQATGQAQEKASNMMGNARNAAQSAQQSCQEAGQQMKAKAQGAADAVKSA 61
+ SQ++S AGQA GQ QEKASN+M A NAAQSA++S QE GQQ+K KAQGA++ +K
Sbjct: 3 NNSQSMSFNAGQAKGQTQEKASNLMDKASNAAQSAKESIQEGGQQLKQKAQGASETIKEK 62
Query: 62 IGANK 66
G +K
Sbjct: 63 TGISK 67
>dbj|BAB09554.1| ABA-inducible protein-like [Arabidopsis thaliana]
gi|15238849|ref|NP_200193.1| expressed protein
[Arabidopsis thaliana]
Length = 67
Score = 77.0 bits (188), Expect = 1e-13
Identities = 37/65 (56%), Positives = 49/65 (74%)
Query: 2 DQSQNLSHQAGQATGQAQEKASNMMGNARNAAQSAQQSCQEAGQQMKAKAQGAADAVKSA 61
+ SQ++S AGQA GQ QEKASN++ A NAAQSA++S QE GQQ+K KAQGA++ +K
Sbjct: 3 NNSQSMSFNAGQAKGQTQEKASNLIDKASNAAQSAKESIQEGGQQLKQKAQGASETIKEK 62
Query: 62 IGANK 66
G +K
Sbjct: 63 TGISK 67
>gb|AAG13408.1| BN28b [Brassica napus]
Length = 65
Score = 52.8 bits (125), Expect = 2e-06
Identities = 27/59 (45%), Positives = 37/59 (61%)
Query: 8 SHQAGQATGQAQEKASNMMGNARNAAQSAQQSCQEAGQQMKAKAQGAADAVKSAIGANK 66
S QAGQ G+A+EK++ +M ++AA SA S Q AGQ++ A GA + VK G NK
Sbjct: 7 SFQAGQTAGRAEEKSNVLMDKVKDAATSAGASAQTAGQKISETAGGAVNVVKEKTGINK 65
>pir||T08087 cold-induced protein kin1 - rape gi|167146|gb|AAA32993.1| kin1
gi|384330|prf||1905417A bn28 gene
Length = 65
Score = 52.4 bits (124), Expect = 3e-06
Identities = 27/59 (45%), Positives = 38/59 (63%)
Query: 8 SHQAGQATGQAQEKASNMMGNARNAAQSAQQSCQEAGQQMKAKAQGAADAVKSAIGANK 66
S QAGQA+G+A+EK + +M ++AA +A S Q AGQ++ A GA + VK G NK
Sbjct: 7 SFQAGQASGRAEEKGNVLMDKVKDAATAAGASAQTAGQKITEAAGGAVNLVKEKTGMNK 65
>gb|AAG13407.1| BN28a [Brassica napus]
Length = 65
Score = 52.0 bits (123), Expect = 4e-06
Identities = 27/59 (45%), Positives = 37/59 (61%)
Query: 8 SHQAGQATGQAQEKASNMMGNARNAAQSAQQSCQEAGQQMKAKAQGAADAVKSAIGANK 66
S QAGQA G+A+EK + +M ++AA +A S Q AGQ++ A GA + VK G NK
Sbjct: 7 SFQAGQAAGRAEEKGNVLMDKVKDAATAAGASAQTAGQKITEAAGGAVNLVKEKTGMNK 65
>emb|CAC01796.1| cold-regulated protein COR6.6 (KIN2) [Arabidopsis thaliana]
gi|21386921|gb|AAM47864.1| cold-regulated protein
COR6.6 (KIN2) [Arabidopsis thaliana]
gi|16230|emb|CAA38894.1| cor6.6 [Arabidopsis thaliana]
gi|18252153|gb|AAL61909.1| cold-regulated protein
COR6.6 (KIN2) [Arabidopsis thaliana]
gi|15237236|ref|NP_197101.1| stress-responsive protein
(KIN2) / stress-induced protein (KIN2) /
cold-responsive protein (COR6.6) / cold-regulated
protein (COR6.6) [Arabidopsis thaliana]
gi|1084343|pir||S22529 cold-regulated protein kin2
(COR6.6) - Arabidopsis thaliana
gi|399298|sp|P31169|KIN2_ARATH Stress-induced KIN2
protein (Cold-induced COR6.6 protein)
Length = 66
Score = 50.8 bits (120), Expect = 9e-06
Identities = 25/66 (37%), Positives = 41/66 (61%)
Query: 1 MDQSQNLSHQAGQATGQAQEKASNMMGNARNAAQSAQQSCQEAGQQMKAKAQGAADAVKS 60
M ++ + QAGQA G+A+EK++ ++ A++AA +A S Q+AG+ + A G + VK
Sbjct: 1 MSETNKNAFQAGQAAGKAEEKSNVLLDKAKDAAAAAGASAQQAGKSISDAAVGGVNFVKD 60
Query: 61 AIGANK 66
G NK
Sbjct: 61 KTGLNK 66
>emb|CAC01795.1| cold and ABA inducible protein kin1 [Arabidopsis thaliana]
gi|21592351|gb|AAM64302.1| cold and ABA inducible
protein kin1 [Arabidopsis thaliana]
gi|21387005|gb|AAM47906.1| cold and ABA inducible
protein kin1 [Arabidopsis thaliana]
gi|296033|emb|CAA35838.1| kin1 [Arabidopsis thaliana]
gi|17065546|gb|AAL32927.1| cold and ABA inducible
protein kin1 [Arabidopsis thaliana]
gi|15237228|ref|NP_197100.1| stress-responsive protein
(KIN1) / stress-induced protein (KIN1) [Arabidopsis
thaliana] gi|125408|sp|P18612|KIN1_ARATH Stress-induced
KIN1 protein
Length = 66
Score = 47.8 bits (112), Expect = 8e-05
Identities = 23/66 (34%), Positives = 38/66 (56%)
Query: 1 MDQSQNLSHQAGQATGQAQEKASNMMGNARNAAQSAQQSCQEAGQQMKAKAQGAADAVKS 60
M ++ + QAGQ G+A+EK++ ++ A++AA A Q+AG+ + A G + VK
Sbjct: 1 MSETNKNAFQAGQTAGKAEEKSNVLLDKAKDAAAGAGAGAQQAGKSVSDAAAGGVNFVKD 60
Query: 61 AIGANK 66
G NK
Sbjct: 61 KTGLNK 66
>emb|CAA12027.1| LEA PROTEIN [Cicer arietinum] gi|24418489|sp|O49817|LEA2_CICAR
Late embryogenesis abundant protein 2 (CapLEA-2)
Length = 155
Score = 47.8 bits (112), Expect = 8e-05
Identities = 22/56 (39%), Positives = 35/56 (62%)
Query: 4 SQNLSHQAGQATGQAQEKASNMMGNARNAAQSAQQSCQEAGQQMKAKAQGAADAVK 59
S + S++AG+A G+ +EK + M+GN + AQ+A++ Q+A Q K K A A K
Sbjct: 3 SHDQSYRAGEAKGRTEEKTNQMIGNIEDKAQAAKEKAQQAAQTAKDKTSQTAQAAK 58
Score = 43.9 bits (102), Expect = 0.001
Identities = 24/64 (37%), Positives = 35/64 (54%), Gaps = 4/64 (6%)
Query: 4 SQNLSHQAGQATGQAQEKASNMMGNARNAAQSAQQS----CQEAGQQMKAKAQGAADAVK 59
+Q +A TG+A+EK S M + + AQS + + Q+ G++ K AQGA DAVK
Sbjct: 76 TQATKEKAQDTTGRAKEKGSEMGQSTKETAQSGKDNSAGFLQQTGEKAKGMAQGATDAVK 135
Query: 60 SAIG 63
G
Sbjct: 136 QTFG 139
>gb|AAD30864.1| seed maturation protein PM30 [Glycine max]
Length = 140
Score = 46.6 bits (109), Expect = 2e-04
Identities = 25/66 (37%), Positives = 38/66 (56%), Gaps = 4/66 (6%)
Query: 2 DQSQNLSHQAGQATGQAQEKASNMMGNARNAAQSAQQS----CQEAGQQMKAKAQGAADA 57
D SQ + Q TG AQ+K S M + + +AQS + + Q+ G+++K AQGA +A
Sbjct: 63 DTSQAAKEKTQQNTGAAQQKTSEMGQSTKESAQSGKDNTQGFLQQTGEKVKGAAQGATEA 122
Query: 58 VKSAIG 63
VK +G
Sbjct: 123 VKQTLG 128
Score = 46.6 bits (109), Expect = 2e-04
Identities = 23/56 (41%), Positives = 31/56 (55%)
Query: 4 SQNLSHQAGQATGQAQEKASNMMGNARNAAQSAQQSCQEAGQQMKAKAQGAADAVK 59
S S++AGQ G+ +EK + MGN AQ+A++ QE Q K K Q A A K
Sbjct: 3 SHRQSYEAGQTKGRTEEKTNQTMGNIGEKAQAAKEKTQEMAQAAKEKTQQTAQAAK 58
>pir||S34660 probable cold-regulated protein kin1 - turnip
gi|395075|emb|CAA80862.1| kin1 [Brassica rapa]
gi|347060|gb|AAA33011.1| kin1
Length = 64
Score = 46.6 bits (109), Expect = 2e-04
Identities = 26/59 (44%), Positives = 37/59 (62%), Gaps = 1/59 (1%)
Query: 8 SHQAGQATGQAQEKASNMMGNARNAAQSAQQSCQEAGQQMKAKAQGAADAVKSAIGANK 66
S QAGQA G+A+EK + +M ++AA +A S + AGQ++ A GA + VK G NK
Sbjct: 7 SFQAGQAAGRAEEKGNVLMDKVKDAA-TAGASAETAGQKITEAAGGAVNLVKEKTGMNK 64
>gb|AAM62981.1| unknown [Arabidopsis thaliana]
Length = 114
Score = 46.2 bits (108), Expect = 2e-04
Identities = 30/89 (33%), Positives = 37/89 (40%), Gaps = 26/89 (29%)
Query: 1 MDQSQNLSHQAGQATGQAQEKASNMMGNARNA--------------------------AQ 34
M SQ LSH AG+ TGQ Q K + N +A
Sbjct: 1 MSSSQQLSHSAGEVTGQVQLKKEEYLNNVSHAMNQNADHHTHSQSQLHSEHDQNNPSLIS 60
Query: 35 SAQQSCQEAGQQMKAKAQGAADAVKSAIG 63
A Q+ G Q+K AQGAADAVK+ +G
Sbjct: 61 QASSVIQQTGGQVKNMAQGAADAVKNTLG 89
>emb|CAA12026.1| LEA protein [Cicer arietinum] gi|24418488|sp|O49816|LEA1_CICAR
Late embryogenesis abundant protein 1 (CapLEA-1)
Length = 177
Score = 46.2 bits (108), Expect = 2e-04
Identities = 21/56 (37%), Positives = 34/56 (60%)
Query: 4 SQNLSHQAGQATGQAQEKASNMMGNARNAAQSAQQSCQEAGQQMKAKAQGAADAVK 59
S + S++AG+ G+ +EK + M+GN + AQ+A++ Q+A Q K K A A K
Sbjct: 3 SHDQSYKAGETMGRTEEKTNQMIGNIEDKAQAAKEKAQQAAQTAKDKTSQTAQAAK 58
Score = 43.5 bits (101), Expect = 0.001
Identities = 23/58 (39%), Positives = 34/58 (57%), Gaps = 4/58 (6%)
Query: 10 QAGQATGQAQEKASNMMGNARNAAQSAQQSC----QEAGQQMKAKAQGAADAVKSAIG 63
+A TG+A+EK S M + + AQS + + Q+ G+++K AQGA DAVK G
Sbjct: 104 KAQDTTGRAREKGSEMGQSTKETAQSGKDNSAGFLQQTGEKVKGMAQGATDAVKQTFG 161
>ref|NP_564613.1| late embryogenesis abundant protein-related / LEA protein-related
[Arabidopsis thaliana] gi|5903038|gb|AAD55597.1|
F6D8.10 [Arabidopsis thaliana] gi|25405585|pir||G96567
F6D8.10 [imported] - Arabidopsis thaliana
Length = 114
Score = 46.2 bits (108), Expect = 2e-04
Identities = 30/89 (33%), Positives = 37/89 (40%), Gaps = 26/89 (29%)
Query: 1 MDQSQNLSHQAGQATGQAQEKASNMMGNARNA--------------------------AQ 34
M SQ LSH AG+ TGQ Q K + N +A
Sbjct: 1 MSSSQQLSHSAGEVTGQVQLKKEEYLNNVSHAMNQNADHHTHSQSQLHSEHDQNNPSLIS 60
Query: 35 SAQQSCQEAGQQMKAKAQGAADAVKSAIG 63
A Q+ G Q+K AQGAADAVK+ +G
Sbjct: 61 QASSVIQQTGGQVKNMAQGAADAVKNTLG 89
>emb|CAB40135.1| cold shock protein [Camelina sativa]
Length = 37
Score = 45.8 bits (107), Expect = 3e-04
Identities = 22/35 (62%), Positives = 27/35 (76%)
Query: 29 ARNAAQSAQQSCQEAGQQMKAKAQGAADAVKSAIG 63
A++AA SAQ+S Q+ GQQ+K KAQGAAD VK G
Sbjct: 3 AKDAAGSAQESAQQTGQQVKEKAQGAADVVKEKTG 37
Database: nr
Posted date: Jul 5, 2005 12:34 AM
Number of letters in database: 863,360,394
Number of sequences in database: 2,540,612
Lambda K H
0.300 0.108 0.271
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 70,730,111
Number of Sequences: 2540612
Number of extensions: 1500012
Number of successful extensions: 8307
Number of sequences better than 10.0: 160
Number of HSP's better than 10.0 without gapping: 117
Number of HSP's successfully gapped in prelim test: 46
Number of HSP's that attempted gapping in prelim test: 7747
Number of HSP's gapped (non-prelim): 537
length of query: 66
length of database: 863,360,394
effective HSP length: 42
effective length of query: 24
effective length of database: 756,654,690
effective search space: 18159712560
effective search space used: 18159712560
T: 11
A: 40
X1: 17 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 43 (21.8 bits)
S2: 68 (30.8 bits)
Lotus: description of TM0215b.3