BLAST2 result
BLASTP 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TM0212.11
(511 letters)
Database: nr
2,540,612 sequences; 863,360,394 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pir||T02206 hypothetical protein - common tobacco retrotransposo... 101 5e-20
gb|AAW22873.1| putative polyprotein [Lycopersicon esculentum] 91 1e-16
emb|CAA32025.1| unnamed protein product [Nicotiana tabacum] gi|1... 87 1e-15
gb|AAK29467.1| polyprotein-like [Lycopersicon chilense] 87 1e-15
gb|AAV88069.1| hypothetical retrotransposon [Ipomoea batatas] 86 3e-15
gb|AAK70406.1| pol polyprotein [Citrus x paradisi] 75 6e-12
emb|CAA37925.1| unnamed protein product [Arabidopsis thaliana] g... 74 8e-12
emb|CAA37917.1| reverse transcriptase [Arabidopsis thaliana] gi|... 74 8e-12
gb|AAP46197.1| putative gag-pol polyprotein [Oryza sativa (japon... 73 2e-11
dbj|BAD34493.1| Gag-Pol [Ipomoea batatas] 73 2e-11
emb|CAG86862.1| unnamed protein product [Debaryomyces hansenii C... 72 4e-11
gb|AAF19226.1| Highly similar to Ta1-3 polyprotein [Arabidopsis ... 71 9e-11
ref|XP_474979.1| OSJNBb0071D01.3 [Oryza sativa (japonica cultiva... 70 2e-10
ref|XP_475026.1| OSJNBb0093G06.7 [Oryza sativa (japonica cultiva... 69 3e-10
pir||T06182 reverse transcriptase homolog - barley gi|387902|gb|... 69 5e-10
emb|CAD29538.1| polyprotein [Debaryomyces hansenii var. hansenii] 68 6e-10
gb|AAX92861.1| retrotransposon protein, putative, Ty1-copia sub-... 68 6e-10
emb|CAB77912.1| putative transposon protein [Arabidopsis thalian... 68 8e-10
gb|AAD19773.1| putative retroelement pol polyprotein [Arabidopsi... 67 1e-09
gb|AAD32759.1| putative retroelement pol polyprotein [Arabidopsi... 67 1e-09
>pir||T02206 hypothetical protein - common tobacco retrotransposon Tto1
gi|1167523|dbj|BAA11674.1| ORF(AA 1-1338) [Nicotiana
tabacum]
Length = 1338
Score = 101 bits (252), Expect = 5e-20
Identities = 54/109 (49%), Positives = 70/109 (63%)
Query: 361 DNDFKKSASGYLIKFVGGVVALKSRLHRCIALSTFEAEFIDITEACKEFL*LKKLFQD*V 420
D D +KS SGYLI F GG V+ +S+L +C+ALST EAEFI TEACKE + +KK +
Sbjct: 1187 DVDSRKSTSGYLINFSGGAVSWQSKLQKCVALSTTEAEFIAATEACKELIWMKKFLTELG 1246
Query: 421 LSRTNTCCFVIVKVRFILRKSPTFHSTSKHIDVRCHWIRDALIARLLEL 469
S+ F + L K+ +FHS SKHIDVR +WIRD L ++L L
Sbjct: 1247 FSQDGYQLFCDSQSAIHLAKNASFHSRSKHIDVRYNWIRDVLEKKMLRL 1295
Score = 95.1 bits (235), Expect = 5e-18
Identities = 49/104 (47%), Positives = 76/104 (72%), Gaps = 4/104 (3%)
Query: 4 KK*MDVMKNEMKSWHDNCSFHLVKLPKGKKALENKWICMVKLESNSTSLRYKAILMVEDF 63
+K ++ M++E+KS H+N +F LVKLPKGK+AL+NKW+ +K + +++ R+KA L+V+ F
Sbjct: 825 EKWIEAMQDEIKSLHENKTFELVKLPKGKRALKNKWVFKMKHDEHNSLPRFKARLVVKGF 884
Query: 64 RHGKSVDSNE----MVKMSFIEIVLSLVATLDLEVKQIDVKAAF 103
K +D +E +VKM+ I VL L A+L+LEV+Q+DVK AF
Sbjct: 885 NQRKGIDFDEIFSPVVKMTSIRTVLGLAASLNLEVEQMDVKTAF 928
Score = 36.6 bits (83), Expect = 1.9
Identities = 17/30 (56%), Positives = 23/30 (76%)
Query: 201 VKKQLGESFFMKDIGAA*HILGIRITRDRQ 230
+K+QL + F MKD+G A ILG+RI RDR+
Sbjct: 1026 LKEQLSKFFAMKDLGPAKQILGMRIMRDRE 1055
>gb|AAW22873.1| putative polyprotein [Lycopersicon esculentum]
Length = 687
Score = 90.5 bits (223), Expect = 1e-16
Identities = 47/109 (43%), Positives = 67/109 (61%)
Query: 361 DNDFKKSASGYLIKFVGGVVALKSRLHRCIALSTFEAEFIDITEACKEFL*LKKLFQD*V 420
D D +KS SGYL KF G ++ +S+L +C+ALST E E+I EA KE L LK+ Q+
Sbjct: 546 DLDNRKSTSGYLFKFARGAISWQSKLQKCVALSTTEVEYIAAVEASKEMLWLKRFLQELG 605
Query: 421 LSRTNTCCFVIVKVRFILRKSPTFHSTSKHIDVRCHWIRDALIARLLEL 469
L ++ F K L K+ +H+ +KHIDVR HW+R + RL++L
Sbjct: 606 LKQSEYVVFCDSKSAMDLSKNIMYHARTKHIDVRYHWLRVVIKERLMKL 654
Score = 68.6 bits (166), Expect = 5e-10
Identities = 39/101 (38%), Positives = 62/101 (60%), Gaps = 5/101 (4%)
Query: 7 MDVMKNEMKSWHDNCSFHLVKLPKGKKALENKWICMVKLESNSTSLRYKAILMVEDFRHG 66
+ M+ +M S N ++ LVK PKGKK L+N+W+ K + N ++ KA L+V+
Sbjct: 188 LKAMQEDMDSLKKNETYDLVKPPKGKKVLKNRWLFKNKKDGNKL-VKRKARLVVKGCHQK 246
Query: 67 KSVDSNE----MVKMSFIEIVLSLVATLDLEVKQIDVKAAF 103
K +D +E +VKM+ I ++L L L+LE++Q+DVK AF
Sbjct: 247 KGIDFDEIFAPVVKMTSIRMILGLATCLNLELEQLDVKTAF 287
Score = 36.2 bits (82), Expect = 2.5
Identities = 23/55 (41%), Positives = 34/55 (61%), Gaps = 2/55 (3%)
Query: 201 VKKQLGESFFMKDIGAA*HILGIRITRDRQ--ETLDVRGTLC*RLLQRS*MENAK 253
+K+ L +SF MKD+G A ILG+ I RDR+ + + R+L+R M+NAK
Sbjct: 385 LKEDLSKSFDMKDLGPAKQILGMEIARDRKAGKLWLSQENYIERVLERFNMKNAK 439
>emb|CAA32025.1| unnamed protein product [Nicotiana tabacum]
gi|130582|sp|P10978|POLX_TOBAC Retrovirus-related Pol
polyprotein from transposon TNT 1-94 [Contains: Protease
; Reverse transcriptase ; Endonuclease]
Length = 1328
Score = 87.0 bits (214), Expect = 1e-15
Identities = 46/101 (45%), Positives = 68/101 (66%), Gaps = 4/101 (3%)
Query: 7 MDVMKNEMKSWHDNCSFHLVKLPKGKKALENKWICMVKLESNSTSLRYKAILMVEDFRHG 66
M M+ EM+S N ++ LV+LPKGK+ L+ KW+ +K + + +RYKA L+V+ F
Sbjct: 827 MKAMQEEMESLQKNGTYKLVELPKGKRPLKCKWVFKLKKDGDCKLVRYKARLVVKGFEQK 886
Query: 67 KSVDSNE----MVKMSFIEIVLSLVATLDLEVKQIDVKAAF 103
K +D +E +VKM+ I +LSL A+LDLEV+Q+DVK AF
Sbjct: 887 KGIDFDEIFSPVVKMTSIRTILSLAASLDLEVEQLDVKTAF 927
Score = 85.1 bits (209), Expect = 5e-15
Identities = 43/111 (38%), Positives = 69/111 (61%)
Query: 361 DNDFKKSASGYLIKFVGGVVALKSRLHRCIALSTFEAEFIDITEACKEFL*LKKLFQD*V 420
D D +KS++GYL F GG ++ +S+L +C+ALST EAE+I TE KE + LK+ Q+
Sbjct: 1186 DIDNRKSSTGYLFTFSGGAISWQSKLQKCVALSTTEAEYIAATETGKEMIWLKRFLQELG 1245
Query: 421 LSRTNTCCFVIVKVRFILRKSPTFHSTSKHIDVRCHWIRDALIARLLELVR 471
L + + + L K+ +H+ +KHIDVR HWIR+ + L++++
Sbjct: 1246 LHQKEYVVYCDSQSAIDLSKNSMYHARTKHIDVRYHWIREMVDDESLKVLK 1296
>gb|AAK29467.1| polyprotein-like [Lycopersicon chilense]
Length = 1328
Score = 87.0 bits (214), Expect = 1e-15
Identities = 46/101 (45%), Positives = 66/101 (64%), Gaps = 4/101 (3%)
Query: 7 MDVMKNEMKSWHDNCSFHLVKLPKGKKALENKWICMVKLESNSTSLRYKAILMVEDFRHG 66
M M EM S N ++ LV+LPKGK+ L+ KW+ +K + N +RYKA L+V+ F
Sbjct: 828 MKAMHEEMGSLQKNGTYQLVELPKGKRPLKCKWVFKLKKDGNGKLVRYKARLVVKGFEQK 887
Query: 67 KSVDSNE----MVKMSFIEIVLSLVATLDLEVKQIDVKAAF 103
K +D +E +VKM+ I +LS+ A+LDLEV+Q+DVK AF
Sbjct: 888 KGIDFDEIFSPVVKMTSIRTILSIAASLDLEVEQLDVKTAF 928
Score = 80.1 bits (196), Expect = 2e-13
Identities = 43/111 (38%), Positives = 67/111 (59%)
Query: 361 DNDFKKSASGYLIKFVGGVVALKSRLHRCIALSTFEAEFIDITEACKEFL*LKKLFQD*V 420
D D +KS + YL F GG ++ +S+L + +ALST EA++I TE CKE L LK+ Q+
Sbjct: 1186 DLDNRKSTTCYLFTFSGGDISWQSKLQKYVALSTTEAKYIAGTEVCKEMLWLKRFLQEHG 1245
Query: 421 LSRTNTCCFVIVKVRFILRKSPTFHSTSKHIDVRCHWIRDALIARLLELVR 471
L + + + L K +H+T+KHID+R HWIR+ + L++V+
Sbjct: 1246 LHQKEYVVYCESQSAMDLSKKAMYHATTKHIDMRYHWIREMVDDGSLQVVK 1296
Score = 36.2 bits (82), Expect = 2.5
Identities = 21/54 (38%), Positives = 34/54 (62%), Gaps = 1/54 (1%)
Query: 201 VKKQLGESFFMKDIGAA*HILGIRITRDRQETLDV-RGTLC*RLLQRS*MENAK 253
++K +SF MKD+G A ILG++I R+ Q+ L + R+L+R M++AK
Sbjct: 1026 LRKDFSKSFDMKDLGPAKQILGMKIAREEQKKLGLSHEKYIERVLERFNMKSAK 1079
>gb|AAV88069.1| hypothetical retrotransposon [Ipomoea batatas]
Length = 1415
Score = 85.9 bits (211), Expect = 3e-15
Identities = 45/100 (45%), Positives = 66/100 (66%), Gaps = 4/100 (4%)
Query: 8 DVMKNEMKSWHDNCSFHLVKLPKGKKALENKWICMVKLESNSTSLRYKAILMVEDFRHGK 67
+ M+ EM S + N +F LVK PK +KAL+N+W+ VK E ++ R+KA L+V+ F K
Sbjct: 826 EAMQEEMNSLYVNDTFELVKAPKNRKALKNRWVYRVKHEEGTSVPRFKARLVVKGFSQKK 885
Query: 68 SVDSNE----MVKMSFIEIVLSLVATLDLEVKQIDVKAAF 103
+D +E +VK S I +VL L A LD+E++Q+DVK AF
Sbjct: 886 GIDFDEIFSPVVKFSSIRVVLGLAARLDIEIEQMDVKTAF 925
Score = 80.9 bits (198), Expect = 9e-14
Identities = 48/109 (44%), Positives = 60/109 (55%), Gaps = 22/109 (20%)
Query: 361 DNDFKKSASGYLIKFVGGVVALKSRLHRCIALSTFEAEFIDITEACKEFL*LKKLFQD*V 420
D D +KS SGYLI + GG V+ +SRL +C+ LST EAEFI EA KE L +KK Q+
Sbjct: 1184 DIDTRKSTSGYLITYAGGAVSWQSRLQKCVDLSTTEAEFIASVEASKEMLWMKKFLQE-- 1241
Query: 421 LSRTNTCCFVIVKVRFILRKSPTFHSTSKHIDVRCHWIRDALIARLLEL 469
+ F+ SKHID R HWIRD L ++LEL
Sbjct: 1242 -------------LGFV-------QDRSKHIDTRYHWIRDILECKMLEL 1270
Score = 37.4 bits (85), Expect = 1.1
Identities = 17/30 (56%), Positives = 24/30 (79%)
Query: 201 VKKQLGESFFMKDIGAA*HILGIRITRDRQ 230
+K++L +SF MKD+G A ILG++I RDRQ
Sbjct: 1023 LKQELSKSFSMKDMGPAKQILGMKIIRDRQ 1052
>gb|AAK70406.1| pol polyprotein [Citrus x paradisi]
Length = 297
Score = 74.7 bits (182), Expect = 6e-12
Identities = 42/102 (41%), Positives = 61/102 (59%)
Query: 361 DNDFKKSASGYLIKFVGGVVALKSRLHRCIALSTFEAEFIDITEACKEFL*LKKLFQD*V 420
D D ++S SGY+ GG V+ +S L IALST EAE+I TEA KE + LK L D
Sbjct: 154 DLDKQRSTSGYVFTLGGGSVSWRSILQSTIALSTTEAEYIAATEAVKEAIWLKGLLGDLG 213
Query: 421 LSRTNTCCFVIVKVRFILRKSPTFHSTSKHIDVRCHWIRDAL 462
+ + N F + L K+ T+H+ +KHIDV+ H++R+ +
Sbjct: 214 VIQENIAVFCDNQSAIFLAKNQTYHARTKHIDVKYHYVREII 255
>emb|CAA37925.1| unnamed protein product [Arabidopsis thaliana] gi|99726|pir||S23320
hypothetical protein 3 - Arabidopsis thaliana
retrotransposon Ta1-2 (strain Landsberg) (fragment)
Length = 154
Score = 74.3 bits (181), Expect = 8e-12
Identities = 43/115 (37%), Positives = 65/115 (56%)
Query: 358 YVVDNDFKKSASGYLIKFVGGVVALKSRLHRCIALSTFEAEFIDITEACKEFL*LKKLFQ 417
Y D D ++S SGY+ G V+ K+ L ALST EAEF+ +TE KE L +K L +
Sbjct: 31 YAADLDRRRSVSGYVFIVGGNTVSWKANLQSVTALSTTEAEFMALTEVAKEALWIKGLMK 90
Query: 418 D*VLSRTNTCCFVIVKVRFILRKSPTFHSTSKHIDVRCHWIRDALIARLLELVRF 472
D L + + + L K+ T H +KHIDVR ++IRD + A ++++R+
Sbjct: 91 DLGLEQDKVTLWCDSQSAICLSKNSTHHERTKHIDVRYNFIRDVVEAGDVDVLRY 145
>emb|CAA37917.1| reverse transcriptase [Arabidopsis thaliana] gi|99755|pir||S23312
retrovirus-related polyprotein KAS-1 - Arabidopsis
thaliana retrotransposon Ta1 (fragment)
Length = 587
Score = 74.3 bits (181), Expect = 8e-12
Identities = 43/114 (37%), Positives = 65/114 (56%)
Query: 358 YVVDNDFKKSASGYLIKFVGGVVALKSRLHRCIALSTFEAEFIDITEACKEFL*LKKLFQ 417
Y D D ++S SGY+ G V+ K+ L ALST EAEF+ +TEA KE L +K L +
Sbjct: 441 YAADLDRRRSVSGYVFTVGGNTVSWKANLQSVTALSTTEAEFMALTEAAKEALWIKGLMK 500
Query: 418 D*VLSRTNTCCFVIVKVRFILRKSPTFHSTSKHIDVRCHWIRDALIARLLELVR 471
D L + + + L K+ T H +KHIDVR ++IRD + A +++++
Sbjct: 501 DLGLEQDKVTLWCDSQSAICLSKNSTHHERTKHIDVRYNFIRDVVEAGDVDVLK 554
Score = 52.8 bits (125), Expect = 3e-05
Identities = 34/96 (35%), Positives = 55/96 (56%), Gaps = 5/96 (5%)
Query: 13 EMKSWHDNCSFHLVKLPKGKKALENKWICMVKLESNSTS-LRYKAILMVEDFRHGKSVDS 71
EM S N ++ LV P+ +K + +W+ +K +RYKA L+ + + + VD
Sbjct: 92 EMDSLIKNGTWVLVDKPQDRKIIGCRWLFKMKSGIPGVEPVRYKARLVAKGYTQREGVDY 151
Query: 72 NEM----VKMSFIEIVLSLVATLDLEVKQIDVKAAF 103
E+ VK +FI I++S+V DLE++Q+DVK AF
Sbjct: 152 QEIFAPVVKHTFIRILMSVVVDQDLELEQMDVKTAF 187
Score = 34.7 bits (78), Expect = 7.4
Identities = 18/30 (60%), Positives = 21/30 (70%)
Query: 201 VKKQLGESFFMKDIGAA*HILGIRITRDRQ 230
VK+QL F MKD+G A ILGI I RDR+
Sbjct: 285 VKEQLSMEFEMKDMGPASRILGIDIIRDRK 314
>gb|AAP46197.1| putative gag-pol polyprotein [Oryza sativa (japonica
cultivar-group)] gi|50920693|ref|XP_470707.1| putative
gag-pol polyprotein [Oryza sativa (japonica
cultivar-group)]
Length = 890
Score = 72.8 bits (177), Expect = 2e-11
Identities = 41/105 (39%), Positives = 62/105 (59%), Gaps = 4/105 (3%)
Query: 3 NKK*MDVMKNEMKSWHDNCSFHLVKLPKGKKALENKWICMVKLESNSTSLRYKAILMVED 62
+ K ++VM +E+KS N + LV++PKG K + KW+ KL+S R+KA L+ +
Sbjct: 381 SSKWLEVMDDELKSMSHNGVWDLVEIPKGSKTVGCKWVYKTKLDSKGKIERFKARLVAKG 440
Query: 63 FRHGKSVDSNE----MVKMSFIEIVLSLVATLDLEVKQIDVKAAF 103
F + +D NE + K IV++LVA DLE+ Q+DVK AF
Sbjct: 441 FSQREGIDYNETFSPVSKKDSFRIVMALVAHYDLELHQMDVKTAF 485
Score = 40.8 bits (94), Expect = 0.10
Identities = 31/107 (28%), Positives = 50/107 (45%), Gaps = 11/107 (10%)
Query: 363 DFKKSASGYLIKFVGGVVALKSRLHRCIALSTFEAEFIDITEACKEFL*LKKLFQD*VLS 422
D KKS SGY+ G ++ KS ST +AEF+ EA + + LK L L
Sbjct: 746 DTKKSTSGYVFTLANGAISWKSSKQTLTTSSTMQAEFLACYEATGQAVWLKNLIPG--LR 803
Query: 423 RTNTCCFVIVKVRFILRKSPTFHST-------SKHIDVRCHWIRDAL 462
++ I + K+ F+S+ +KHID++ H ++D +
Sbjct: 804 VVDSISKPI--TLYYDNKAAVFYSSNNKSSGAAKHIDIKYHVVKDRI 848
>dbj|BAD34493.1| Gag-Pol [Ipomoea batatas]
Length = 1298
Score = 72.8 bits (177), Expect = 2e-11
Identities = 34/98 (34%), Positives = 64/98 (64%), Gaps = 4/98 (4%)
Query: 10 MKNEMKSWHDNCSFHLVKLPKGKKALENKWICMVKLESNSTSLRYKAILMVEDFRHGKSV 69
M+ E+++ H N ++ LV LP+G+K + NKW+ +K + RY+A L+V+ + + +
Sbjct: 800 MQEEIEALHKNNTWDLVPLPQGRKPIGNKWVFKIKRNGDDQVERYRARLVVKGYAQKEGI 859
Query: 70 DSNE----MVKMSFIEIVLSLVATLDLEVKQIDVKAAF 103
D NE +V+++ + +VL++ AT +L ++Q+DVK AF
Sbjct: 860 DFNEIFSPVVRLTTVRVVLAMCATFNLHLEQLDVKTAF 897
Score = 70.1 bits (170), Expect = 2e-10
Identities = 39/103 (37%), Positives = 58/103 (55%)
Query: 358 YVVDNDFKKSASGYLIKFVGGVVALKSRLHRCIALSTFEAEFIDITEACKEFL*LKKLFQ 417
Y D D KS +GY+ K GG V+ S+L +A ST EAE++ T+A KE + LK L +
Sbjct: 1153 YAGDLDKSKSTTGYVFKVAGGAVSWVSKLQAVVATSTTEAEYVAATQASKEAIWLKMLLE 1212
Query: 418 D*VLSRTNTCCFVIVKVRFILRKSPTFHSTSKHIDVRCHWIRD 460
+ + F + L ++P FHS +KHI V+ H+IR+
Sbjct: 1213 ELGHKQEFVSLFCDSQSALHLARNPAFHSRTKHIRVQYHFIRE 1255
>emb|CAG86862.1| unnamed protein product [Debaryomyces hansenii CBS767]
gi|50428153|ref|XP_458720.1| unnamed protein product
[Debaryomyces hansenii]
Length = 398
Score = 72.0 bits (175), Expect = 4e-11
Identities = 40/118 (33%), Positives = 67/118 (55%), Gaps = 17/118 (14%)
Query: 361 DNDFKKSASGYLIKFVGGVVALKSRLHRCIALSTFEAEFIDITEACKEFL*LKKLFQD-- 418
D+ +KS +GY++K+ G ++ KS+ +ALST EAE++ +TEA KE + + +LF+
Sbjct: 249 DSSDRKSITGYIVKYGGAPISWKSKKQPTVALSTTEAEYLALTEAIKEAMWMAQLFKQLN 308
Query: 419 -------*VLSRTNTCCFVIVKVRFILRKSPTFHSTSKHIDVRCHWIRDALIARLLEL 469
V N+C +L + P FH +KHID+R H+IR+ +I ++L
Sbjct: 309 IPLKLPIPVYEDNNSC--------ILLAEHPVFHQRTKHIDIRYHFIREHIIQNEIKL 358
>gb|AAF19226.1| Highly similar to Ta1-3 polyprotein [Arabidopsis thaliana]
gi|25301707|pir||E86490 hypothetical protein F28L22.3 -
Arabidopsis thaliana
Length = 1356
Score = 70.9 bits (172), Expect = 9e-11
Identities = 38/105 (36%), Positives = 59/105 (56%)
Query: 358 YVVDNDFKKSASGYLIKFVGGVVALKSRLHRCIALSTFEAEFIDITEACKEFL*LKKLFQ 417
Y D D ++S SGY+ G V+ K+ L +A+ST EAE+I + EA KE + +K L Q
Sbjct: 1210 YAADLDRRRSISGYVFTIGGNTVSWKASLQPVVAMSTTEAEYIALAEAAKEAMWIKGLLQ 1269
Query: 418 D*VLSRTNTCCFVIVKVRFILRKSPTFHSTSKHIDVRCHWIRDAL 462
D + + + + L K+ +H +KHIDVR ++IRD +
Sbjct: 1270 DMGMQQDKVKIWCDSQSAICLSKNSVYHERTKHIDVRFNYIRDVV 1314
Score = 49.7 bits (117), Expect = 2e-04
Identities = 35/99 (35%), Positives = 55/99 (55%), Gaps = 9/99 (9%)
Query: 12 NEMKSWHDNCSFHLVKLPKGKKALENKWICMVKLESNSTSL---RYKAILMVEDFRHGKS 68
+EM S N ++ LV PK +K + +W+ KL+S + R+KA L+ + + +
Sbjct: 860 DEMDSLMKNGTWDLVDKPKDRKIIGCRWL--FKLKSGIPGVEPTRFKARLVAKGYTQREG 917
Query: 69 VDSNEM----VKMSFIEIVLSLVATLDLEVKQIDVKAAF 103
VD E+ VK I I++SLV DLE++Q+DVK F
Sbjct: 918 VDYQEIFAPVVKHVSIRILMSLVVDKDLELEQMDVKTTF 956
Score = 35.0 bits (79), Expect = 5.7
Identities = 18/30 (60%), Positives = 21/30 (70%)
Query: 201 VKKQLGESFFMKDIGAA*HILGIRITRDRQ 230
VK+QL F MKD+G A ILGI I RDR+
Sbjct: 1054 VKEQLSTEFEMKDMGGASRILGIDIYRDRK 1083
>ref|XP_474979.1| OSJNBb0071D01.3 [Oryza sativa (japonica cultivar-group)]
gi|38346026|emb|CAE01957.2| OSJNBb0071D01.3 [Oryza
sativa (japonica cultivar-group)]
Length = 610
Score = 69.7 bits (169), Expect = 2e-10
Identities = 39/105 (37%), Positives = 61/105 (57%), Gaps = 4/105 (3%)
Query: 3 NKK*MDVMKNEMKSWHDNCSFHLVKLPKGKKALENKWICMVKLESNSTSLRYKAILMVED 62
+ K ++ M++E+K N + LV++PKG K + KW+ KL+S R+KA L+ +
Sbjct: 288 SSKWLEAMEDELKFMSHNGVWDLVEIPKGAKTVGYKWVYKTKLDSKGKIERFKARLVAKG 347
Query: 63 FRHGKSVDSNE----MVKMSFIEIVLSLVATLDLEVKQIDVKAAF 103
F + +D NE + K IV++LVA DLE+ Q+DVK AF
Sbjct: 348 FSQREGIDYNETSSPISKKDSFRIVMALVAHYDLELHQMDVKTAF 392
>ref|XP_475026.1| OSJNBb0093G06.7 [Oryza sativa (japonica cultivar-group)]
gi|38347566|emb|CAE04999.2| OSJNBb0093G06.7 [Oryza
sativa (japonica cultivar-group)]
Length = 923
Score = 69.3 bits (168), Expect = 3e-10
Identities = 40/106 (37%), Positives = 63/106 (58%), Gaps = 4/106 (3%)
Query: 2 DNKK*MDVMKNEMKSWHDNCSFHLVKLPKGKKALENKWICMVKLESNSTSLRYKAILMVE 61
D++K + MK+E++S H N ++LV P G KA+E KW+ K++ + YKA L+ +
Sbjct: 689 DSEKWLGAMKSEIESMHVNQVWNLVDPPDGVKAIECKWVFKKKIDIDGNVHMYKAQLVAK 748
Query: 62 DFRHGKSVDSNE----MVKMSFIEIVLSLVATLDLEVKQIDVKAAF 103
FR + VD +E + + I IVL++ A D E+ Q+DVK AF
Sbjct: 749 GFRQIQGVDYDETFSPIAMLKSIRIVLAIAAYFDYEIWQMDVKIAF 794
>pir||T06182 reverse transcriptase homolog - barley gi|387902|gb|AAB42154.1| ORF
[Hordeum vulgare]
Length = 153
Score = 68.6 bits (166), Expect = 5e-10
Identities = 38/106 (35%), Positives = 63/106 (58%), Gaps = 4/106 (3%)
Query: 2 DNKK*MDVMKNEMKSWHDNCSFHLVKLPKGKKALENKWICMVKLESNSTSLRYKAILMVE 61
D+ + ++ MK+E+ S ++N + LV L ++A+ENKWI K ++N YKA L+ +
Sbjct: 22 DSNEWLEAMKSEIGSMYENKVWTLVDLLDDRRAIENKWIFKKKTDANDNVTVYKARLVAK 81
Query: 62 DFRHGKSVDSNE----MVKMSFIEIVLSLVATLDLEVKQIDVKAAF 103
FR + VD E +VK+ + I+L++ D E+ Q+DVK AF
Sbjct: 82 GFRQIQGVDYEETFSPVVKLKSVRIMLAIATFYDYEIWQMDVKTAF 127
>emb|CAD29538.1| polyprotein [Debaryomyces hansenii var. hansenii]
Length = 1490
Score = 68.2 bits (165), Expect = 6e-10
Identities = 38/118 (32%), Positives = 66/118 (55%), Gaps = 17/118 (14%)
Query: 361 DNDFKKSASGYLIKFVGGVVALKSRLHRCIALSTFEAEFIDITEACKEFL*LKKLFQD-- 418
D +KS +GY++++ G ++ KS+ +A+ST EAE++ + EA KE L + LF +
Sbjct: 1341 DKSDRKSITGYIVRYGGAPISWKSKKQTTVAMSTTEAEYLALGEATKEALWIIMLFDEMR 1400
Query: 419 -------*VLSRTNTCCFVIVKVRFILRKSPTFHSTSKHIDVRCHWIRDALIARLLEL 469
+ N+C +L + P FHS +KHID+R H+IR+ +I + ++L
Sbjct: 1401 VPLQLPISIHEDNNSC--------ILLAEHPVFHSRTKHIDIRHHFIREHIIKKQIKL 1450
Score = 46.2 bits (108), Expect = 0.002
Identities = 29/98 (29%), Positives = 52/98 (52%), Gaps = 9/98 (9%)
Query: 10 MKNEMKSWHDNCSFHLVKLPKGKKALENKWICMVKLESNSTSLRYKAILMVEDFRHGKSV 69
M +EM + + N ++ LV LPK +KA+ N+W+ K + RYKA L+ + F
Sbjct: 1005 MDSEMSAHYSNNTWDLVSLPKDRKAIGNRWVFTKKDDG-----RYKARLVAQGFSQVPGE 1059
Query: 70 D----SNEMVKMSFIEIVLSLVATLDLEVKQIDVKAAF 103
D + +++ ++++L+ A + V Q+DV AF
Sbjct: 1060 DYLDTFSPVIRYESVKLLLAFSAVDNRVVHQMDVDTAF 1097
>gb|AAX92861.1| retrotransposon protein, putative, Ty1-copia sub-class [Oryza sativa
(japonica cultivar-group)]
Length = 1373
Score = 68.2 bits (165), Expect = 6e-10
Identities = 38/107 (35%), Positives = 60/107 (55%), Gaps = 4/107 (3%)
Query: 358 YVVDNDFKKSASGYLIKFVGGVVALKSRLHRCIALSTFEAEFIDITEACKEFL*LKKLFQ 417
Y D D ++S +GY+ V+ ++ L +ALST EAE++ I EACKE + LK L+
Sbjct: 1189 YAADLDRRRSLTGYVFTIGSCAVSWRATLQSVVALSTTEAEYMAICEACKELIWLKGLYA 1248
Query: 418 D*VLSRTNTCCFVIV--KVRFILRKSPTFHSTSKHIDVRCHWIRDAL 462
+ LS +C + + L K FH +KHID++ H++RD +
Sbjct: 1249 E--LSGVESCISLHCDSESAIYLTKDQMFHERTKHIDIKYHFVRDVI 1293
Score = 64.3 bits (155), Expect = 9e-09
Identities = 42/107 (39%), Positives = 61/107 (56%), Gaps = 5/107 (4%)
Query: 2 DNKK*MDVMKNEMKSWHDNCSFHLVKLPKGKKALENKWICMVKLE-SNSTSLRYKAILMV 60
D++ + M EM+S N ++ +V LPK KK + KWI K S+S +YKA L+
Sbjct: 828 DSENWISAMHEEMQSLEKNSTWEVVPLPKKKKTISCKWIFKRKEGLSSSEPPKYKARLVA 887
Query: 61 EDFRHGKSVDSNEM----VKMSFIEIVLSLVATLDLEVKQIDVKAAF 103
+ VD N++ VK S I LS+VA+ DLE++Q+DVK AF
Sbjct: 888 RGYSQIPGVDYNDVFSPVVKHSSIRTFLSIVASHDLELEQLDVKTAF 934
Score = 38.1 bits (87), Expect = 0.67
Identities = 24/55 (43%), Positives = 34/55 (61%), Gaps = 2/55 (3%)
Query: 201 VKKQLGESFFMKDIGAA*HILGIRITRDRQETLDV--RGTLC*RLLQRS*MENAK 253
+KK L F MKD+G+A ILG+ I+RDR+ L + ++LQR M+NAK
Sbjct: 1031 LKKLLSSEFDMKDLGSAKKILGMEISRDRKSGLLFLSQHNYIKKVLQRFNMQNAK 1085
>emb|CAB77912.1| putative transposon protein [Arabidopsis thaliana]
gi|4773883|gb|AAD29756.1| putative transposon protein
[Arabidopsis thaliana] gi|25301709|pir||B85056 probable
transposon protein [imported] - Arabidopsis thaliana
Length = 570
Score = 67.8 bits (164), Expect = 8e-10
Identities = 38/105 (36%), Positives = 57/105 (54%)
Query: 358 YVVDNDFKKSASGYLIKFVGGVVALKSRLHRCIALSTFEAEFIDITEACKEFL*LKKLFQ 417
Y D D ++S +GY+ G V+ KS L IA+ T EAE++ ITEA KE L ++ L +
Sbjct: 437 YAADLDKRRSTTGYVFTVGGNTVSWKSNLQNTIAIPTTEAEYVAITEAVKEALWMQGLLK 496
Query: 418 D*VLSRTNTCCFVIVKVRFILRKSPTFHSTSKHIDVRCHWIRDAL 462
D + + + + L K FH +KHI V+ H+IRD +
Sbjct: 497 DMGVKQDKVLVWSDSQCVISLSKKNMFHERTKHIAVKYHFIRDVI 541
Score = 47.8 bits (112), Expect = 8e-04
Identities = 33/98 (33%), Positives = 50/98 (50%), Gaps = 23/98 (23%)
Query: 10 MKNEMKSWHDNCSFHLVKLPKGKKALENKWICMVKLESNSTSLRYKAILMVEDFRHGKSV 69
M +EM S N ++ +V PK +K RYKA L+ F K +
Sbjct: 189 MNDEMNSLWKNFTWDIVDRPKDQK-------------------RYKARLVARGFTQRKGI 229
Query: 70 DSNEM----VKMSFIEIVLSLVATLDLEVKQIDVKAAF 103
D +E+ VK + I +++S+VA DLE++Q+DVK AF
Sbjct: 230 DYDEVFAPVVKHTSIRVLMSIVAQDDLELEQMDVKTAF 267
>gb|AAD19773.1| putative retroelement pol polyprotein [Arabidopsis thaliana]
gi|25301697|pir||B84512 probable retroelement pol
polyprotein [imported] - Arabidopsis thaliana
Length = 1335
Score = 67.4 bits (163), Expect = 1e-09
Identities = 37/109 (33%), Positives = 63/109 (56%)
Query: 363 DFKKSASGYLIKFVGGVVALKSRLHRCIALSTFEAEFIDITEACKEFL*LKKLFQD*VLS 422
D ++S +GY+ G ++ KS+L + +A+S+ EAE++ +TEA KE L LK + S
Sbjct: 1195 DTRRSITGYVFTVGGNTISWKSKLQKVVAISSTEAEYMALTEAVKEALWLKGFAAELGHS 1254
Query: 423 RTNTCCFVIVKVRFILRKSPTFHSTSKHIDVRCHWIRDALIARLLELVR 471
+ + L K+ H +KHID+R H+IRD + A L+++V+
Sbjct: 1255 QDYVEVHSDSQSAITLAKNSVHHERTKHIDIRLHFIRDIICAGLIKVVK 1303
>gb|AAD32759.1| putative retroelement pol polyprotein [Arabidopsis thaliana]
gi|25301696|pir||F84486 probable retroelement pol
polyprotein [imported] - Arabidopsis thaliana
Length = 1356
Score = 67.0 bits (162), Expect = 1e-09
Identities = 37/114 (32%), Positives = 63/114 (54%)
Query: 358 YVVDNDFKKSASGYLIKFVGGVVALKSRLHRCIALSTFEAEFIDITEACKEFL*LKKLFQ 417
Y D D ++S +G + G ++ KS L R +A ST E+E++ +TEA KE + LK L +
Sbjct: 1211 YAADLDKRRSITGLVFTLGGNTISWKSGLQRVVAQSTTESEYMSLTEAVKEAIWLKGLLK 1270
Query: 418 D*VLSRTNTCCFVIVKVRFILRKSPTFHSTSKHIDVRCHWIRDALIARLLELVR 471
D + + F + L K+ H +KHIDV+ H+IR+ + +E+++
Sbjct: 1271 DFGYEQKSVEIFCDSQSAIALSKNNVHHERTKHIDVKYHFIREIISDGTVEVLK 1324
Score = 49.3 bits (116), Expect = 3e-04
Identities = 32/99 (32%), Positives = 55/99 (55%), Gaps = 5/99 (5%)
Query: 10 MKNEMKSWHDNCSFHLVKLPKGKKALENKWICMVKLESNSTSL-RYKAILMVEDFRHGKS 68
M E+ S N ++ +V P+ ++ + +WI KL R+KA L+ + + +
Sbjct: 856 MDEEIDSQEKNNTWTIVTRPENQRIIGCRWIFKYKLGILGVEEPRFKARLVAKGYAQKEG 915
Query: 69 VDSNEM----VKMSFIEIVLSLVATLDLEVKQIDVKAAF 103
+D +E+ VK I ++LS+VA DLE++Q+DVK AF
Sbjct: 916 IDYHEIFAPVVKHVSIRVLLSIVAQEDLELEQLDVKTAF 954
Database: nr
Posted date: Jul 5, 2005 12:34 AM
Number of letters in database: 863,360,394
Number of sequences in database: 2,540,612
Lambda K H
0.367 0.164 0.593
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 607,856,926
Number of Sequences: 2540612
Number of extensions: 19142583
Number of successful extensions: 96939
Number of sequences better than 10.0: 658
Number of HSP's better than 10.0 without gapping: 390
Number of HSP's successfully gapped in prelim test: 268
Number of HSP's that attempted gapping in prelim test: 95106
Number of HSP's gapped (non-prelim): 1532
length of query: 511
length of database: 863,360,394
effective HSP length: 132
effective length of query: 379
effective length of database: 527,999,610
effective search space: 200111852190
effective search space used: 200111852190
T: 11
A: 40
X1: 14 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 36 (21.7 bits)
S2: 77 (34.3 bits)
Lotus: description of TM0212.11