BLAST2 result
BLASTP 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TM0211.20
(162 letters)
Database: nr
2,540,612 sequences; 863,360,394 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_464189.1| putative SNF2 domain-containing protein [Oryza ... 117 1e-25
emb|CAB71002.1| TATA box binding protein (TBP) associated factor... 111 8e-24
emb|CAF91684.1| unnamed protein product [Tetraodon nigroviridis] 100 1e-20
emb|CAI14103.1| BTAF1 RNA polymerase II, B-TFIID transcription f... 100 2e-20
ref|XP_347207.2| PREDICTED: similar to TBP-associated factor 172... 100 2e-20
ref|XP_543929.1| PREDICTED: similar to TBP-associated factor 172... 100 2e-20
ref|XP_507918.1| PREDICTED: BTAF1 RNA polymerase II, B-TFIID tra... 100 2e-20
ref|XP_591010.1| PREDICTED: similar to TBP-associated factor 172... 100 2e-20
dbj|BAD92080.1| BTAF1 RNA polymerase II, B-TFIID transcription f... 100 2e-20
gb|AAH29930.1| Similar to BTAF1 RNA polymerase II, B-TFIID trans... 100 2e-20
ref|XP_421689.1| PREDICTED: similar to TBP-associated factor 172... 100 2e-20
ref|XP_129248.6| PREDICTED: RIKEN cDNA E430027O22 [Mus musculus] 100 2e-20
dbj|BAC40605.1| unnamed protein product [Mus musculus] 100 2e-20
gb|AAH94345.1| E430027O22Rik protein [Mus musculus] 100 2e-20
emb|CAA21270.1| SPBC1826.01c [Schizosaccharomyces pombe] gi|1911... 99 5e-20
pir||T40642 probable helicase - fission yeast (Schizosaccharomyc... 99 5e-20
emb|CAG78891.1| unnamed protein product [Yarrowia lipolytica CLI... 98 7e-20
gb|EAA52297.1| hypothetical protein MG04989.4 [Magnaporthe grise... 97 1e-19
gb|EAK93762.1| hypothetical protein CaO19.4502 [Candida albicans... 97 2e-19
ref|XP_637789.1| hypothetical protein DDB0186863 [Dictyostelium ... 97 2e-19
>ref|XP_464189.1| putative SNF2 domain-containing protein [Oryza sativa (japonica
cultivar-group)] gi|49389246|dbj|BAD25208.1| putative
SNF2 domain-containing protein [Oryza sativa (japonica
cultivar-group)]
Length = 2057
Score = 117 bits (292), Expect = 1e-25
Identities = 62/96 (64%), Positives = 75/96 (77%), Gaps = 2/96 (2%)
Query: 3 HVGGFGMNLTSADTLVFVEHDRNSMRDHQAMDKARRLGQEKVVNVHRLIMRDTLEEQVMS 62
HVGG G+NLTSADTLVF+EHD N M+D QAMD+A RLGQ KVVNVHRLIMR TLEE+VMS
Sbjct: 1902 HVGGLGLNLTSADTLVFMEHDWNPMKDLQAMDRAHRLGQRKVVNVHRLIMRGTLEEKVMS 1961
Query: 63 KERFEVSVANAANNLRLLSVKSSVDHSDGVTELVGS 98
+RF+VSVANA N S+K+ ++D + +L S
Sbjct: 1962 LQRFKVSVANAVINAENASLKTM--NTDQLLDLFAS 1995
>emb|CAB71002.1| TATA box binding protein (TBP) associated factor (TAF)-like protein
[Arabidopsis thaliana] gi|15232471|ref|NP_190996.1| SNF2
domain-containing protein / helicase domain-containing
protein [Arabidopsis thaliana] gi|11358873|pir||T47587
TATA box binding protein (TBP) associated factor
(TAF)-like protein - Arabidopsis thaliana
Length = 2049
Score = 111 bits (277), Expect = 8e-24
Identities = 61/109 (55%), Positives = 77/109 (69%), Gaps = 13/109 (11%)
Query: 3 HVGGFGMNLTSADTLVFVEHDRNSMRDHQ-----------AMDKARRLGQEKVVNVHRLI 51
HVGG G+NLTSADTLVF+EHD N MRDHQ AMD+A RLGQ++VVNVHRLI
Sbjct: 1886 HVGGLGLNLTSADTLVFMEHDWNPMRDHQFANIELNKLWQAMDRAHRLGQKRVVNVHRLI 1945
Query: 52 MRDTLEEQVMSKERFEVSVANAANNLRLLSVKSSVDHSDGVTELVGSGD 100
MR TLEE+VMS ++F+VSVAN N S+K+ ++D + +L S +
Sbjct: 1946 MRGTLEEKVMSLQKFKVSVANTVINAENASMKTM--NTDQLLDLFASAE 1992
>emb|CAF91684.1| unnamed protein product [Tetraodon nigroviridis]
Length = 1996
Score = 100 bits (249), Expect = 1e-20
Identities = 46/70 (65%), Positives = 60/70 (85%)
Query: 3 HVGGFGMNLTSADTLVFVEHDRNSMRDHQAMDKARRLGQEKVVNVHRLIMRDTLEEQVMS 62
HVGG G+NLT ADT+VFVEHD N MRD QAMD+A R+GQ++VVNV+RLI R TLEE++M
Sbjct: 1827 HVGGLGLNLTGADTVVFVEHDWNPMRDLQAMDRAHRIGQKRVVNVYRLITRGTLEEKIMG 1886
Query: 63 KERFEVSVAN 72
++F++S+AN
Sbjct: 1887 LQKFKMSIAN 1896
>emb|CAI14103.1| BTAF1 RNA polymerase II, B-TFIID transcription factor-associated,
170kDa (Mot1 homolog, S. cerevisiae) [Homo sapiens]
gi|55664837|emb|CAH73478.1| BTAF1 RNA polymerase II,
B-TFIID transcription factor-associated, 170kDa (Mot1
homolog, S. cerevisiae) [Homo sapiens]
gi|2995136|emb|CAA04475.1| TBP associated factor [Homo
sapiens] gi|27477070|ref|NP_003963.1| BTAF1 RNA
polymerase II, B-TFIID transcription factor-associated,
170kDa [Homo sapiens] gi|2920587|gb|AAC04573.1|
TBP-associated factor 172 [Homo sapiens]
gi|12643543|sp|O14981|T172_HUMAN TBP-associated factor
172 (TAF-172) (TAF(II)170)
Length = 1849
Score = 100 bits (248), Expect = 2e-20
Identities = 50/94 (53%), Positives = 71/94 (75%), Gaps = 5/94 (5%)
Query: 3 HVGGFGMNLTSADTLVFVEHDRNSMRDHQAMDKARRLGQEKVVNVHRLIMRDTLEEQVMS 62
HVGG G+NLT ADT+VFVEHD N MRD QAMD+A R+GQ++VVNV+RLI R TLEE++M
Sbjct: 1707 HVGGLGLNLTGADTVVFVEHDWNPMRDLQAMDRAHRIGQKRVVNVYRLITRGTLEEKIMG 1766
Query: 63 KERFEVSVANAANNLRLLSVKSSVDHSDGVTELV 96
++F++++AN ++S ++S S G +L+
Sbjct: 1767 LQKFKMNIANT-----VISQENSSLQSMGTDQLL 1795
>ref|XP_347207.2| PREDICTED: similar to TBP-associated factor 172 (TAF-172)
(TAF(II)170) [Rattus norvegicus]
Length = 1967
Score = 100 bits (248), Expect = 2e-20
Identities = 50/94 (53%), Positives = 71/94 (75%), Gaps = 5/94 (5%)
Query: 3 HVGGFGMNLTSADTLVFVEHDRNSMRDHQAMDKARRLGQEKVVNVHRLIMRDTLEEQVMS 62
HVGG G+NLT ADT+VFVEHD N MRD QAMD+A R+GQ++VVNV+RLI R TLEE++M
Sbjct: 1825 HVGGLGLNLTGADTVVFVEHDWNPMRDLQAMDRAHRIGQKRVVNVYRLITRGTLEEKIMG 1884
Query: 63 KERFEVSVANAANNLRLLSVKSSVDHSDGVTELV 96
++F++++AN ++S ++S S G +L+
Sbjct: 1885 LQKFKMNIANT-----VISQENSSLQSMGTDQLL 1913
>ref|XP_543929.1| PREDICTED: similar to TBP-associated factor 172 (TAF-172)
(TAF(II)170) [Canis familiaris]
Length = 1829
Score = 100 bits (248), Expect = 2e-20
Identities = 50/94 (53%), Positives = 71/94 (75%), Gaps = 5/94 (5%)
Query: 3 HVGGFGMNLTSADTLVFVEHDRNSMRDHQAMDKARRLGQEKVVNVHRLIMRDTLEEQVMS 62
HVGG G+NLT ADT+VFVEHD N MRD QAMD+A R+GQ++VVNV+RLI R TLEE++M
Sbjct: 1687 HVGGLGLNLTGADTVVFVEHDWNPMRDLQAMDRAHRIGQKRVVNVYRLITRGTLEEKIMG 1746
Query: 63 KERFEVSVANAANNLRLLSVKSSVDHSDGVTELV 96
++F++++AN ++S ++S S G +L+
Sbjct: 1747 LQKFKMNIANT-----VISQENSSLQSMGTDQLL 1775
>ref|XP_507918.1| PREDICTED: BTAF1 RNA polymerase II, B-TFIID transcription
factor-associated, 170kDa [Pan troglodytes]
Length = 1238
Score = 100 bits (248), Expect = 2e-20
Identities = 50/94 (53%), Positives = 71/94 (75%), Gaps = 5/94 (5%)
Query: 3 HVGGFGMNLTSADTLVFVEHDRNSMRDHQAMDKARRLGQEKVVNVHRLIMRDTLEEQVMS 62
HVGG G+NLT ADT+VFVEHD N MRD QAMD+A R+GQ++VVNV+RLI R TLEE++M
Sbjct: 964 HVGGLGLNLTGADTVVFVEHDWNPMRDLQAMDRAHRIGQKRVVNVYRLITRGTLEEKIMG 1023
Query: 63 KERFEVSVANAANNLRLLSVKSSVDHSDGVTELV 96
++F++++AN ++S ++S S G +L+
Sbjct: 1024 LQKFKMNIANT-----VISQENSSLQSMGTDQLL 1052
>ref|XP_591010.1| PREDICTED: similar to TBP-associated factor 172 (TAF-172)
(TAF(II)170), partial [Bos taurus]
Length = 306
Score = 100 bits (248), Expect = 2e-20
Identities = 50/94 (53%), Positives = 71/94 (75%), Gaps = 5/94 (5%)
Query: 3 HVGGFGMNLTSADTLVFVEHDRNSMRDHQAMDKARRLGQEKVVNVHRLIMRDTLEEQVMS 62
HVGG G+NLT ADT+VFVEHD N MRD QAMD+A R+GQ++VVNV+RLI R TLEE++M
Sbjct: 179 HVGGLGLNLTGADTVVFVEHDWNPMRDLQAMDRAHRIGQKRVVNVYRLITRGTLEEKIMG 238
Query: 63 KERFEVSVANAANNLRLLSVKSSVDHSDGVTELV 96
++F++++AN ++S ++S S G +L+
Sbjct: 239 LQKFKMNIANT-----VISQENSSLQSMGTDQLL 267
>dbj|BAD92080.1| BTAF1 RNA polymerase II, B-TFIID transcription factor-associated,
170kDa variant [Homo sapiens]
Length = 699
Score = 100 bits (248), Expect = 2e-20
Identities = 50/94 (53%), Positives = 71/94 (75%), Gaps = 5/94 (5%)
Query: 3 HVGGFGMNLTSADTLVFVEHDRNSMRDHQAMDKARRLGQEKVVNVHRLIMRDTLEEQVMS 62
HVGG G+NLT ADT+VFVEHD N MRD QAMD+A R+GQ++VVNV+RLI R TLEE++M
Sbjct: 557 HVGGLGLNLTGADTVVFVEHDWNPMRDLQAMDRAHRIGQKRVVNVYRLITRGTLEEKIMG 616
Query: 63 KERFEVSVANAANNLRLLSVKSSVDHSDGVTELV 96
++F++++AN ++S ++S S G +L+
Sbjct: 617 LQKFKMNIANT-----VISQENSSLQSMGTDQLL 645
>gb|AAH29930.1| Similar to BTAF1 RNA polymerase II, B-TFIID transcription
factor-associated, 170 kD (Mot1 homolog, S. cerevisiae)
[Homo sapiens]
Length = 680
Score = 100 bits (248), Expect = 2e-20
Identities = 50/94 (53%), Positives = 71/94 (75%), Gaps = 5/94 (5%)
Query: 3 HVGGFGMNLTSADTLVFVEHDRNSMRDHQAMDKARRLGQEKVVNVHRLIMRDTLEEQVMS 62
HVGG G+NLT ADT+VFVEHD N MRD QAMD+A R+GQ++VVNV+RLI R TLEE++M
Sbjct: 538 HVGGLGLNLTGADTVVFVEHDWNPMRDLQAMDRAHRIGQKRVVNVYRLITRGTLEEKIMG 597
Query: 63 KERFEVSVANAANNLRLLSVKSSVDHSDGVTELV 96
++F++++AN ++S ++S S G +L+
Sbjct: 598 LQKFKMNIANT-----VISQENSSLQSMGTDQLL 626
>ref|XP_421689.1| PREDICTED: similar to TBP-associated factor 172 (TAF-172)
(TAF(II)170) [Gallus gallus]
Length = 1879
Score = 100 bits (248), Expect = 2e-20
Identities = 47/82 (57%), Positives = 65/82 (78%)
Query: 3 HVGGFGMNLTSADTLVFVEHDRNSMRDHQAMDKARRLGQEKVVNVHRLIMRDTLEEQVMS 62
HVGG G+NLT ADT+VFVEHD N MRD QAMD+A R+GQ++VVNV+RLI R TLEE++M
Sbjct: 1736 HVGGLGLNLTGADTVVFVEHDWNPMRDLQAMDRAHRIGQKRVVNVYRLITRGTLEEKIMG 1795
Query: 63 KERFEVSVANAANNLRLLSVKS 84
++F++++AN + S++S
Sbjct: 1796 LQKFKMNIANTVISQENASLQS 1817
>ref|XP_129248.6| PREDICTED: RIKEN cDNA E430027O22 [Mus musculus]
Length = 1599
Score = 100 bits (248), Expect = 2e-20
Identities = 50/94 (53%), Positives = 71/94 (75%), Gaps = 5/94 (5%)
Query: 3 HVGGFGMNLTSADTLVFVEHDRNSMRDHQAMDKARRLGQEKVVNVHRLIMRDTLEEQVMS 62
HVGG G+NLT ADT+VFVEHD N MRD QAMD+A R+GQ++VVNV+RLI R TLEE++M
Sbjct: 1457 HVGGLGLNLTGADTVVFVEHDWNPMRDLQAMDRAHRIGQKRVVNVYRLITRGTLEEKIMG 1516
Query: 63 KERFEVSVANAANNLRLLSVKSSVDHSDGVTELV 96
++F++++AN ++S ++S S G +L+
Sbjct: 1517 LQKFKMNIANT-----VISQENSSLQSMGTDQLL 1545
>dbj|BAC40605.1| unnamed protein product [Mus musculus]
Length = 594
Score = 100 bits (248), Expect = 2e-20
Identities = 50/94 (53%), Positives = 71/94 (75%), Gaps = 5/94 (5%)
Query: 3 HVGGFGMNLTSADTLVFVEHDRNSMRDHQAMDKARRLGQEKVVNVHRLIMRDTLEEQVMS 62
HVGG G+NLT ADT+VFVEHD N MRD QAMD+A R+GQ++VVNV+RLI R TLEE++M
Sbjct: 452 HVGGLGLNLTGADTVVFVEHDWNPMRDLQAMDRAHRIGQKRVVNVYRLITRGTLEEKIMG 511
Query: 63 KERFEVSVANAANNLRLLSVKSSVDHSDGVTELV 96
++F++++AN ++S ++S S G +L+
Sbjct: 512 LQKFKMNIANT-----VISQENSSLQSMGTDQLL 540
>gb|AAH94345.1| E430027O22Rik protein [Mus musculus]
Length = 990
Score = 100 bits (248), Expect = 2e-20
Identities = 50/94 (53%), Positives = 71/94 (75%), Gaps = 5/94 (5%)
Query: 3 HVGGFGMNLTSADTLVFVEHDRNSMRDHQAMDKARRLGQEKVVNVHRLIMRDTLEEQVMS 62
HVGG G+NLT ADT+VFVEHD N MRD QAMD+A R+GQ++VVNV+RLI R TLEE++M
Sbjct: 848 HVGGLGLNLTGADTVVFVEHDWNPMRDLQAMDRAHRIGQKRVVNVYRLITRGTLEEKIMG 907
Query: 63 KERFEVSVANAANNLRLLSVKSSVDHSDGVTELV 96
++F++++AN ++S ++S S G +L+
Sbjct: 908 LQKFKMNIANT-----VISQENSSLQSMGTDQLL 936
>emb|CAA21270.1| SPBC1826.01c [Schizosaccharomyces pombe]
gi|19112872|ref|NP_596080.1| hypothetical protein
SPBC1826.01c [Schizosaccharomyces pombe 972h-]
Length = 635
Score = 98.6 bits (244), Expect = 5e-20
Identities = 46/74 (62%), Positives = 60/74 (80%)
Query: 3 HVGGFGMNLTSADTLVFVEHDRNSMRDHQAMDKARRLGQEKVVNVHRLIMRDTLEEQVMS 62
HVGG G+NLT ADT++FVEHD N MRD QAMD+A R+GQ+KVVNV+RLI R LEE++M
Sbjct: 481 HVGGLGLNLTGADTVIFVEHDWNPMRDLQAMDRAHRIGQKKVVNVYRLITRGCLEEKIMG 540
Query: 63 KERFEVSVANAANN 76
+RF+++VA+ N
Sbjct: 541 LQRFKMNVASTVVN 554
>pir||T40642 probable helicase - fission yeast (Schizosaccharomyces pombe)
Length = 1953
Score = 98.6 bits (244), Expect = 5e-20
Identities = 46/74 (62%), Positives = 60/74 (80%)
Query: 3 HVGGFGMNLTSADTLVFVEHDRNSMRDHQAMDKARRLGQEKVVNVHRLIMRDTLEEQVMS 62
HVGG G+NLT ADT++FVEHD N MRD QAMD+A R+GQ+KVVNV+RLI R LEE++M
Sbjct: 1799 HVGGLGLNLTGADTVIFVEHDWNPMRDLQAMDRAHRIGQKKVVNVYRLITRGCLEEKIMG 1858
Query: 63 KERFEVSVANAANN 76
+RF+++VA+ N
Sbjct: 1859 LQRFKMNVASTVVN 1872
>emb|CAG78891.1| unnamed protein product [Yarrowia lipolytica CLIB99]
gi|50557340|ref|XP_506078.1| hypothetical protein
[Yarrowia lipolytica]
Length = 1869
Score = 98.2 bits (243), Expect = 7e-20
Identities = 44/74 (59%), Positives = 61/74 (81%)
Query: 3 HVGGFGMNLTSADTLVFVEHDRNSMRDHQAMDKARRLGQEKVVNVHRLIMRDTLEEQVMS 62
HVGG G+NLT ADT++FVEHD N M D QAMD+A R+GQ+KVVNV+RLI R+TLEE++M
Sbjct: 1715 HVGGLGLNLTGADTVIFVEHDWNPMNDLQAMDRAHRIGQKKVVNVYRLITRNTLEEKIMG 1774
Query: 63 KERFEVSVANAANN 76
++F++++A+ N
Sbjct: 1775 LQKFKLNIASTVIN 1788
>gb|EAA52297.1| hypothetical protein MG04989.4 [Magnaporthe grisea 70-15]
gi|39940502|ref|XP_359788.1| hypothetical protein
MG04989.4 [Magnaporthe grisea 70-15]
Length = 1963
Score = 97.4 bits (241), Expect = 1e-19
Identities = 49/97 (50%), Positives = 69/97 (70%), Gaps = 2/97 (2%)
Query: 4 VGGFGMNLTSADTLVFVEHDRNSMRDHQAMDKARRLGQEKVVNVHRLIMRDTLEEQVMSK 63
VGG G+NLT ADT++FVEHD N RD QAMD+A R+GQ+KVVNV+RLI R TLEE+++S
Sbjct: 1803 VGGLGLNLTGADTVIFVEHDWNPQRDLQAMDRAHRIGQKKVVNVYRLITRATLEEKILSL 1862
Query: 64 ERFEVSVANAANNLRLLSVKSSVDHSDGVTELVGSGD 100
+RF++ VA+ N + + + +D + +L GD
Sbjct: 1863 QRFKIDVASTVVNQQNAGLATM--DTDQILDLFSLGD 1897
>gb|EAK93762.1| hypothetical protein CaO19.4502 [Candida albicans SC5314]
gi|46434315|gb|EAK93728.1| hypothetical protein
CaO19.11978 [Candida albicans SC5314]
Length = 1915
Score = 96.7 bits (239), Expect = 2e-19
Identities = 45/81 (55%), Positives = 64/81 (78%)
Query: 4 VGGFGMNLTSADTLVFVEHDRNSMRDHQAMDKARRLGQEKVVNVHRLIMRDTLEEQVMSK 63
VGG G+NLT ADT++FVEHD N M D QAMD+A RLGQ+KVVNV+RLI +DTLEE++M
Sbjct: 1750 VGGLGLNLTGADTVIFVEHDWNPMNDLQAMDRAHRLGQKKVVNVYRLITKDTLEEKIMGL 1809
Query: 64 ERFEVSVANAANNLRLLSVKS 84
++F++++A+ N + ++S
Sbjct: 1810 QKFKMNIASTIVNQQNAGLQS 1830
>ref|XP_637789.1| hypothetical protein DDB0186863 [Dictyostelium discoideum]
gi|60466223|gb|EAL64285.1| hypothetical protein
DDB0186863 [Dictyostelium discoideum]
Length = 2005
Score = 96.7 bits (239), Expect = 2e-19
Identities = 43/74 (58%), Positives = 60/74 (80%)
Query: 3 HVGGFGMNLTSADTLVFVEHDRNSMRDHQAMDKARRLGQEKVVNVHRLIMRDTLEEQVMS 62
HVGG G+NLT ADT++F+EHD N M+D QAMD+A R+GQ+KVVNV+RLI TLEE++M
Sbjct: 1842 HVGGLGLNLTGADTVIFLEHDWNPMKDLQAMDRAHRIGQKKVVNVYRLITSGTLEEKIMG 1901
Query: 63 KERFEVSVANAANN 76
++F++++AN N
Sbjct: 1902 LQKFKLNIANTVIN 1915
Database: nr
Posted date: Jul 5, 2005 12:34 AM
Number of letters in database: 863,360,394
Number of sequences in database: 2,540,612
Lambda K H
0.326 0.139 0.417
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 244,850,931
Number of Sequences: 2540612
Number of extensions: 8463961
Number of successful extensions: 29590
Number of sequences better than 10.0: 1421
Number of HSP's better than 10.0 without gapping: 1354
Number of HSP's successfully gapped in prelim test: 67
Number of HSP's that attempted gapping in prelim test: 28113
Number of HSP's gapped (non-prelim): 1503
length of query: 162
length of database: 863,360,394
effective HSP length: 118
effective length of query: 44
effective length of database: 563,568,178
effective search space: 24796999832
effective search space used: 24796999832
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 70 (31.6 bits)
Lotus: description of TM0211.20