BLAST2 result
BLASTP 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TM0211.11
(298 letters)
Database: nr
2,540,612 sequences; 863,360,394 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAN28828.1| At1g54780/T22H22_19 [Arabidopsis thaliana] gi|215... 385 e-106
gb|AAT85144.1| unknown protein [Oryza sativa (japonica cultivar-... 367 e-100
ref|ZP_00164423.2| COG1512: Beta-propeller domains of methanol d... 120 5e-26
ref|YP_170935.1| hypothetical protein syc0225_c [Synechococcus e... 118 2e-25
ref|ZP_00327223.1| COG1512: Beta-propeller domains of methanol d... 112 1e-23
dbj|BAB75799.1| alr4100 [Nostoc sp. PCC 7120] gi|17231592|ref|NP... 110 6e-23
ref|NP_681194.1| hypothetical protein tll0404 [Thermosynechococc... 102 2e-20
ref|ZP_00157977.2| COG1512: Beta-propeller domains of methanol d... 102 2e-20
ref|ZP_00516622.1| Protein of unknown function DUF477 [Crocospha... 100 5e-20
ref|NP_441552.1| hypothetical protein sll1390 [Synechocystis sp.... 94 4e-18
emb|CAC27013.1| hypothetical protein [Guillardia theta] gi|13812... 83 1e-14
emb|CAE07733.1| conserved hypothetical protein [Synechococcus sp... 78 4e-13
emb|CAE20922.1| conserved hypothetical protein [Prochlorococcus ... 75 2e-12
emb|CAE35276.1| putative membrane protein [Bordetella bronchisep... 44 0.004
emb|CAE40547.1| putative membrane protein [Bordetella pertussis ... 44 0.004
ref|ZP_00139078.1| COG1512: Beta-propeller domains of methanol d... 42 0.016
ref|NP_250142.1| hypothetical protein PA1451 [Pseudomonas aerugi... 42 0.021
ref|YP_098199.1| hypothetical protein BF0914 [Bacteroides fragil... 42 0.021
emb|CAH06579.1| conserved hypothetical protein [Bacteroides frag... 42 0.028
ref|NP_971566.1| hypothetical protein TDE0956 [Treponema dentico... 42 0.028
>gb|AAN28828.1| At1g54780/T22H22_19 [Arabidopsis thaliana]
gi|21593390|gb|AAM65339.1| unknown [Arabidopsis
thaliana] gi|23198362|gb|AAN15708.1| unknown protein
[Arabidopsis thaliana] gi|20259868|gb|AAM13281.1|
unknown protein [Arabidopsis thaliana]
gi|19698897|gb|AAL91184.1| unknown protein [Arabidopsis
thaliana] gi|14030683|gb|AAK53016.1| At1g54780/T22H22_19
[Arabidopsis thaliana] gi|18405061|ref|NP_564667.1|
thylakoid lumen 18.3 kDa protein [Arabidopsis thaliana]
gi|17064782|gb|AAL32545.1| Unknown protein [Arabidopsis
thaliana] gi|3776572|gb|AAC64889.1| ESTs gb|R65052,
gb|AA712146, gb|H76533, gb|H76282, gb|AA650771,
gb|H76287, gb|AA650887, gb|N37383, gb|Z29721 and
gb|Z29722 come from this gene. [Arabidopsis thaliana]
gi|25405770|pir||H96589 hypothetical protein T22H22.19
[imported] - Arabidopsis thaliana
gi|47825426|emb|CAD90763.1| lumenal protein subunit of
photosystem II [Arabidopsis thaliana]
Length = 285
Score = 385 bits (990), Expect = e-106
Identities = 207/299 (69%), Positives = 241/299 (80%), Gaps = 15/299 (5%)
Query: 1 MGTIFPPHMTLPPLSSIKPSPTRLLLSPPSPLPKSNSLFCSRPIISSLRKN-QTLSLKPS 59
M T+ P PPL+ P P LS P S+SL S+P S K+ T KP
Sbjct: 1 METLLSPRALSPPLN---PKP----LSLHQTKPTSHSLSLSKPTTFSGPKHLSTRFTKPE 53
Query: 60 LASSGTSWLSHAQQGLAALAITLALNFSPIFLSGNALASEFDVLNEVPAKDSYVVDDAGV 119
+WL A+QGLAALA++L L FSP+ G ALASEF++LN+ P K++YVVDDAGV
Sbjct: 54 ----SRNWLIDAKQGLAALALSLTLTFSPV---GTALASEFNILNDGPPKETYVVDDAGV 106
Query: 120 LSRVTRSDLKGLLSDLESRKKFHINFITVRKLTSKADAFEYADQVLERWYPSVEEGNDKG 179
LSRVT+SDLK LLSDLE RKK +NFITVRKLTSKADAFEYADQVLE+WYPS+EEGN+KG
Sbjct: 107 LSRVTKSDLKKLLSDLEYRKKLRLNFITVRKLTSKADAFEYADQVLEKWYPSIEEGNNKG 166
Query: 180 IVVLVTSQKEGAVTGGPAFVQAVGENILDATVAENLPVLATDEKYNEAVLSTAKRLVAAI 239
IVVL+TSQKEGA+TGGPAF++AVGENILDATV+ENLPVLATDEKYNEAV S+AKRLVAAI
Sbjct: 167 IVVLITSQKEGAITGGPAFIEAVGENILDATVSENLPVLATDEKYNEAVYSSAKRLVAAI 226
Query: 240 DGLPDPGGPQVKDNKRESNFRTKEETEQKRGQFSLVVGGLLVVAFVVPMLQYYAYVAKK 298
DG PDPGGP VKD+KRESNF+TKEET++KRGQFSLVVGGLLV+AFVVPM QY+AYV++K
Sbjct: 227 DGQPDPGGPTVKDSKRESNFKTKEETDEKRGQFSLVVGGLLVIAFVVPMAQYFAYVSRK 285
>gb|AAT85144.1| unknown protein [Oryza sativa (japonica cultivar-group)]
Length = 299
Score = 367 bits (941), Expect = e-100
Identities = 196/306 (64%), Positives = 232/306 (75%), Gaps = 15/306 (4%)
Query: 1 MGTIFPPHMTLPPLSSIKPSPTRLLLSPPSPLPKSNSLFCSRPIISSLRKNQTLSLKPSL 60
M T+ P L PL K P + P+ S+S +R ++S + Q +
Sbjct: 1 METLLSPSTLLSPLRGSKKKP-----ASPAASASSSSSSPARSVVSCALRRQQPPPQAVA 55
Query: 61 ASSGT--------SWLSHAQQGLAALAITLALNFSPIFLSGNALASEFDVLNEVPAKDSY 112
A G SW + Q GLAA A++LA++ +P A+ASEFDVLN P +D+Y
Sbjct: 56 AWRGDGGRGGGVGSWATFLQHGLAAAALSLAISMAPA--PAPAVASEFDVLNGGPPEDTY 113
Query: 113 VVDDAGVLSRVTRSDLKGLLSDLESRKKFHINFITVRKLTSKADAFEYADQVLERWYPSV 172
VVDDAGVLSRVT+SD+K L+ DLESRK INFITVRKLTSKADAFEYADQVLE+WYP+V
Sbjct: 114 VVDDAGVLSRVTKSDVKRLVRDLESRKNIRINFITVRKLTSKADAFEYADQVLEKWYPTV 173
Query: 173 EEGNDKGIVVLVTSQKEGAVTGGPAFVQAVGENILDATVAENLPVLATDEKYNEAVLSTA 232
EEGN+KGIVVLVTSQKEGA+TGGPAFVQAVG+ ILD+TV+ENLPVLATDEKYNEA+ +TA
Sbjct: 174 EEGNNKGIVVLVTSQKEGAITGGPAFVQAVGDEILDSTVSENLPVLATDEKYNEAIYTTA 233
Query: 233 KRLVAAIDGLPDPGGPQVKDNKRESNFRTKEETEQKRGQFSLVVGGLLVVAFVVPMLQYY 292
KRL AAIDGLPDPGGP KDNKRESNF+TKEETE+KRGQF+LVVGGLLV+AFVVPM QYY
Sbjct: 234 KRLAAAIDGLPDPGGPTFKDNKRESNFKTKEETEEKRGQFTLVVGGLLVIAFVVPMAQYY 293
Query: 293 AYVAKK 298
AY++KK
Sbjct: 294 AYISKK 299
>ref|ZP_00164423.2| COG1512: Beta-propeller domains of methanol dehydrogenase type
[Synechococcus elongatus PCC 7942]
Length = 208
Score = 120 bits (301), Expect = 5e-26
Identities = 71/193 (36%), Positives = 105/193 (53%), Gaps = 3/193 (1%)
Query: 106 VPA-KDSYVVDDAGVLSRVTRSDLKGLLSDLESRKKFHINFITVRKLTSKADAFEYADQV 164
VPA ++++VD+A LSR+ S L G L L + + F+T+R+L + DQ+
Sbjct: 15 VPAGSNTWIVDEAQSLSRINESQLTGELQPLSQKTGIEVRFVTLRRLDYGETIDSFVDQL 74
Query: 165 LERWYPSVEEGNDKGIVVLVTSQKEGAVTGGPAFVQAVGENILDATVAENLPV-LATDEK 223
+RWYP E ++ ++ L T + G + + I + + E + V L K
Sbjct: 75 FKRWYPDAEAQANQVLIALDTITNTIGIRVGEVAAERLTPAIATSVIDETMQVPLRQGNK 134
Query: 224 YNEAVLSTAKRLVAAIDGLPDPGGPQVKDNKR-ESNFRTKEETEQKRGQFSLVVGGLLVV 282
YN+A+L + RLVA + G PDPG P V D R E F + EETE+ RG ++VV LLV+
Sbjct: 135 YNQAILDASDRLVAVLSGEPDPGPPVVIDTTRVEGTFASAEETEESRGNSTVVVIVLLVL 194
Query: 283 AFVVPMLQYYAYV 295
A V+PM YY YV
Sbjct: 195 ATVIPMATYYWYV 207
>ref|YP_170935.1| hypothetical protein syc0225_c [Synechococcus elongatus PCC 6301]
gi|56685193|dbj|BAD78415.1| hypothetical protein
[Synechococcus elongatus PCC 6301]
Length = 208
Score = 118 bits (295), Expect = 2e-25
Identities = 70/193 (36%), Positives = 104/193 (53%), Gaps = 3/193 (1%)
Query: 106 VPA-KDSYVVDDAGVLSRVTRSDLKGLLSDLESRKKFHINFITVRKLTSKADAFEYADQV 164
VPA ++++VD+A LSR+ S L G L L + + F+T+R+L + DQ+
Sbjct: 15 VPAGSNTWIVDEAQSLSRINESQLTGELQPLSQKTGIEVRFVTLRRLDYGETIDSFVDQL 74
Query: 165 LERWYPSVEEGNDKGIVVLVTSQKEGAVTGGPAFVQAVGENILDATVAENLPV-LATDEK 223
+RWYP E ++ ++ L T + G + + I + + E + V L K
Sbjct: 75 FKRWYPDAEAQANQVLIALDTITNTIGIRVGEVAAERLTPAIATSVIDETMQVPLRQGNK 134
Query: 224 YNEAVLSTAKRLVAAIDGLPDPGGPQVKDNKR-ESNFRTKEETEQKRGQFSLVVGGLLVV 282
YN+A+L + RLVA + G PDPG P V D R E F + EETE+ RG ++VV LV+
Sbjct: 135 YNQAILDASDRLVAVLSGEPDPGPPVVIDTTRVEGTFASAEETEESRGNSTVVVIVSLVL 194
Query: 283 AFVVPMLQYYAYV 295
A V+PM YY YV
Sbjct: 195 ATVIPMATYYWYV 207
>ref|ZP_00327223.1| COG1512: Beta-propeller domains of methanol dehydrogenase type
[Trichodesmium erythraeum IMS101]
Length = 217
Score = 112 bits (280), Expect = 1e-23
Identities = 66/188 (35%), Positives = 106/188 (56%), Gaps = 6/188 (3%)
Query: 111 SYVVDDAGVLSRVTRSDLKGLLSDLESRKKFHINFITVRKLTSKADAFEYADQVLERWYP 170
+++VDDA VLSRVT++ L L +L + + F+T+R+L A + +++ ++W+P
Sbjct: 27 TFIVDDADVLSRVTKNKLNNTLENLANLTGNEVRFVTIRRLDYGETADSFTEKLFDKWFP 86
Query: 171 SVEEGNDKGIVVLVTSQKEGAVTGGPAFVQAVGENILDATVAENLPVLATD-EKYNEAVL 229
++E ++ +VVL T A+ G A + +I + V E + V D KYNEA L
Sbjct: 87 TLEAKANQTLVVLDTLTNNDAIRIGDAVKIFMSNDITQSLVNETIQVPIRDGNKYNEAFL 146
Query: 230 STAKRLVAAIDGLPDPGGPQVKDN---KRESNFRTKEETEQKRGQFSLVVGGLLVVAFVV 286
+ + RL A + G PDPG P +KD + + F++ EET + +VV LLV+A VV
Sbjct: 147 AASDRLTAVLSGEPDPGPPDIKDELSAQVAATFKSAEETNDQSATVLVVV--LLVIATVV 204
Query: 287 PMLQYYAY 294
PM Y+ Y
Sbjct: 205 PMATYFWY 212
>dbj|BAB75799.1| alr4100 [Nostoc sp. PCC 7120] gi|17231592|ref|NP_488140.1|
hypothetical protein alr4100 [Nostoc sp. PCC 7120]
gi|25359462|pir||AE2318 hypothetical protein alr4100
[imported] - Nostoc sp. (strain PCC 7120)
Length = 245
Score = 110 bits (274), Expect = 6e-23
Identities = 75/225 (33%), Positives = 113/225 (49%), Gaps = 9/225 (4%)
Query: 75 LAALAITLALNFSPIFLSGNALASEFDVLNEVPAKDS-YVVDDAGVLSRVTRSDLKGLLS 133
L LAI LA + S S ALAS + + A DS +V+D V+SR+ + L
Sbjct: 20 LPFLAIILAASLS----SAPALASGVYQIPNLTAGDSTWVLDQGDVISRINEGAISSSLE 75
Query: 134 DLESRKKFHINFITVRKLTSKADAFEYADQVLERWYPSVEEGNDKGIVVLVTSQKEGAVT 193
DL + F+T+ +L +A + E+W+PS E ++ ++VL T A+
Sbjct: 76 DLAKETGKEVRFVTIHRLDYGETPESFAQALFEKWFPSKEAQANQILLVLDTVTNGTAII 135
Query: 194 GGPAFVQAVGENILDATVAENLPVLATD-EKYNEAVLSTAKRLVAAIDGLPDPGGPQVKD 252
G + + I ++ E L D KYN+A L + RLVA + G PDPG PQ+ D
Sbjct: 136 TGDEVKPLLTDTIANSVAEETLAAPLRDGNKYNQAFLDASDRLVAVLSGQPDPGPPQIVD 195
Query: 253 NKR-ESNFRTKEETEQKRGQFSLVVGGLLVVAFVVPMLQYYAYVA 296
+ E F+ EET+ +G + V GLL+ A ++PM YY Y+A
Sbjct: 196 KVQVEGTFKKAEETD--KGNATAWVVGLLIAATIIPMATYYIYLA 238
>ref|NP_681194.1| hypothetical protein tll0404 [Thermosynechococcus elongatus BP-1]
gi|22294125|dbj|BAC07956.1| tll0404 [Thermosynechococcus
elongatus BP-1]
Length = 228
Score = 102 bits (253), Expect = 2e-20
Identities = 63/228 (27%), Positives = 112/228 (48%), Gaps = 6/228 (2%)
Query: 67 WLSHAQQGLAALAITLALNFSPIFLSGNALASEFDVLNEVPAKDSYVVDDAGVLSRVTRS 126
W + G+ L +TL S ++++ S D+ P + V+D+ VLS VT+
Sbjct: 3 WQVAWKNGIRYLLLTLLA--STLWVTPVWATSAIDI--PFPGTATGVIDEGNVLSAVTQG 58
Query: 127 DLKGLLSDLESRKKFHINFITVRKLTSKADAFEYADQVLERWYPSVEEGNDKGIVVLVTS 186
+ L DL +++ +T+ +L + D + +W+P E ++ I+ L T
Sbjct: 59 SVGRSLQDLSEATGINVHVVTLHRLDYGETPQSFVDDLFSQWFPDPESQANQVIIALDTV 118
Query: 187 QKEGAVTGGPAFVQAVGENILDATVAENLPVLATDEKYNEAVLSTAKRLVAAIDGLPDPG 246
A+ G A + + ++ V E + V + YN+AVL T RL + G PDPG
Sbjct: 119 TNGTAIHYGDAVAERLNPETAESIVQETMRVPLREGNYNQAVLDTVDRLGKVLKGEPDPG 178
Query: 247 GPQVKDNKRESNFRTKEETEQKRGQFSLVVGGLLVVAFVVPMLQYYAY 294
P V++ E +++KEET+ + +++V LL+ A V+PM+ Y+ Y
Sbjct: 179 PPVVREVVVEKTYKSKEETDDRSA--TIIVVALLIAATVIPMVTYFMY 224
>ref|ZP_00157977.2| COG1512: Beta-propeller domains of methanol dehydrogenase type
[Anabaena variabilis ATCC 29413]
Length = 235
Score = 102 bits (253), Expect = 2e-20
Identities = 71/230 (30%), Positives = 114/230 (48%), Gaps = 16/230 (6%)
Query: 78 LAITLALNFSPIFLSGN-----ALASEFDVLNEVPAKDS-YVVDDAGVLSRVTRSDLKGL 131
L I L L F I L+ + ALAS + + A DS +V+D V+SR+ +
Sbjct: 4 LFIRLILPFLTIILAASLSSSPALASGVYQIPNLTAGDSTWVLDQGDVISRINEGAISSS 63
Query: 132 LSDLESRKKFHINFITVRKLTSKADAFEYADQVLERWYPSVEEGNDKGIVVLVTSQKEGA 191
L +L + + F+T+ +L + + E+W+P+ E ++ ++VL T A
Sbjct: 64 LENLAKQTGKEVRFVTIHRLDYGETPESFGQALFEKWFPNKEAQANQILLVLDTVTNGTA 123
Query: 192 VTGG----PAFVQAVGENILDATVAENLPVLATDEKYNEAVLSTAKRLVAAIDGLPDPGG 247
+ G P A+ ++ + T+A L KYN+A L + RLVA + G PDPG
Sbjct: 124 IITGDEVKPLLTDAIANSVAEETLAAPL---RDGNKYNQAFLDASDRLVAVLSGQPDPGP 180
Query: 248 PQVKDNKR-ESNFRTKEETEQKRGQFSLVVGGLLVVAFVVPMLQYYAYVA 296
PQ+ D + E F+ ET+ +G + V GLL+ A ++PM YY Y+A
Sbjct: 181 PQIVDKVQVEGTFKKAGETD--KGNATAWVVGLLIAATIIPMATYYIYLA 228
>ref|ZP_00516622.1| Protein of unknown function DUF477 [Crocosphaera watsonii WH 8501]
gi|67855030|gb|EAM50299.1| Protein of unknown function
DUF477 [Crocosphaera watsonii WH 8501]
Length = 230
Score = 100 bits (249), Expect = 5e-20
Identities = 69/222 (31%), Positives = 109/222 (49%), Gaps = 8/222 (3%)
Query: 75 LAALAITLALNFSPIFLSGNALASEFDVLNEVPAKDSYVVDDAGVLSRVTRSDLKGLLSD 134
+ LAI L +P +G + VL + D++V+D A +S + L G L
Sbjct: 11 ILCLAIALTTAMAPATATG---VYDLPVLGQ--GSDTWVIDQADAISFSNENRLSGQLET 65
Query: 135 LESRKKFHINFITVRKLTSKADAFEYADQVLERWYPSVEEGNDKGIVVLVTSQKEGAVTG 194
L + + I VR+L AD + +WYP+ +E ++ I+++ T + A+
Sbjct: 66 LANDNGAEVRLIAVRRLDYGVTMEGLADDIFAKWYPTPKEKANQVILIVDTFTNKIALRQ 125
Query: 195 GPAFVQAVGENILDATVAENLPV-LATDEKYNEAVLSTAKRLVAAIDGLPDPGGPQVKDN 253
G + ++I + V E + V L KYNEA L RLVA + G PDPG PQV++
Sbjct: 126 GEDTKSLLTDDIATSVVKETVTVPLRQGAKYNEAFLEAGDRLVAVLSGNPDPGPPQVQEL 185
Query: 254 KRESNFRTKEETEQKRGQFSLVVGGLLVVAFVVPMLQYYAYV 295
ES F + E+T+ +VV L+V+A +PM Y+ YV
Sbjct: 186 NIESTFTSAEDTDDTSATIWVVV--LMVLATAIPMATYFWYV 225
>ref|NP_441552.1| hypothetical protein sll1390 [Synechocystis sp. PCC 6803]
gi|1653317|dbj|BAA18232.1| sll1390 [Synechocystis sp.
PCC 6803] gi|7470069|pir||S75671 hypothetical protein
sll1390 - Synechocystis sp. (strain PCC 6803)
Length = 249
Score = 94.4 bits (233), Expect = 4e-18
Identities = 57/190 (30%), Positives = 94/190 (49%), Gaps = 3/190 (1%)
Query: 107 PAKDSYVVDDAGVLSRVTRSDLKGLLSDLESRKKFHINFITVRKLTSKADAFEYADQVLE 166
P +++VD A +S + L L L F+ +R+L A + + + E
Sbjct: 57 PGSKTFLVDQAEAISLANENRLNSDLKKLAQSSGQEARFVVIRRLDFDATIDGFVNDLFE 116
Query: 167 RWYPSVEEGNDKGIVVLVTSQKEGAVTGGPAFVQAVGENILDATVAENLPV-LATDEKYN 225
RWYP +++ ++VL T A+ G + + ++D+ + E L V L KYN
Sbjct: 117 RWYPDEASQSNQTLLVLDTLTNSTALRRGETAESLLTDEMVDSLLRETLAVPLKDGAKYN 176
Query: 226 EAVLSTAKRLVAAIDGLPDPGGPQVKDNKRESNFRTKEETEQKRGQFSLVVGGLLVVAFV 285
+A++ KRL A + G PDPG P +++ E F T EET+ +VV LL +A +
Sbjct: 177 QALIEADKRLGAILAGQPDPGPPALEEISLEGTFTTAEETDDTSATVWVVV--LLALATL 234
Query: 286 VPMLQYYAYV 295
+PM+ Y+ YV
Sbjct: 235 IPMVTYFWYV 244
>emb|CAC27013.1| hypothetical protein [Guillardia theta]
gi|13812326|ref|NP_113444.1| hypothetical protein
[Guillardia theta]
Length = 249
Score = 82.8 bits (203), Expect = 1e-14
Identities = 48/183 (26%), Positives = 99/183 (53%), Gaps = 5/183 (2%)
Query: 113 VVDDAGVLSRVTRSDLKGLLSDLESRKKFHINFITVRKLTSKADAFEYADQVLERWYPSV 172
V D++GVL++ + L+ L++ F ++F+++R L D +Y+ + + +
Sbjct: 69 VNDESGVLTKSSIVYLEKSSEKLQADFGFKLHFLSIRSLPYDVDISKYSKDI----FNEM 124
Query: 173 EEGNDKGIVVLVTSQKEGAVTGGPAFVQAVGENILDATVAENLPVLATDEKYNEAVLSTA 232
GN ++VL + G++ G V + I ++ + + V A +E+Y+ A +
Sbjct: 125 NLGNKDVLIVLSSKLASGSIVWGDD-VSLLNSQISESIIKDTYAVKAREEQYSSATIDVT 183
Query: 233 KRLVAAIDGLPDPGGPQVKDNKRESNFRTKEETEQKRGQFSLVVGGLLVVAFVVPMLQYY 292
RL++ + D + + +SNF++ + TE+KR +++ ++ LLV+AFVVPM+Q++
Sbjct: 184 NRLISLLSNKGDIMPIERLNQSSQSNFKSAKATEEKRSKYAAIIIILLVIAFVVPMVQFF 243
Query: 293 AYV 295
YV
Sbjct: 244 YYV 246
>emb|CAE07733.1| conserved hypothetical protein [Synechococcus sp. WH 8102]
gi|33865752|ref|NP_897311.1| hypothetical protein
SYNW1218 [Synechococcus sp. WH 8102]
Length = 223
Score = 77.8 bits (190), Expect = 4e-13
Identities = 52/188 (27%), Positives = 94/188 (49%), Gaps = 9/188 (4%)
Query: 110 DSYVVDDAGVLSRVTRSDLKGLLSDLESRKKFHINFITVRKLTSKADAFEYADQVLERWY 169
D V+DDA V SR +RS+L L DL + + +T+R+L + + +++L +W
Sbjct: 40 DERVLDDAEVFSRASRSELNARLQDL-AADRVDARVVTLRRLDYGLNLDSFGEELLAQW- 97
Query: 170 PSVEEGNDKGIVVLV-TSQKEGAVTGGPAFVQAVGENILDATVAENLPV-LATDEKYNEA 227
EG++ +++L+ T K ++ P + E +L +T + V L ++Y +A
Sbjct: 98 --SSEGSEPLLLLLIETQNKRASIAADPTLQSQLPETLLTSTARTTMSVPLREGDRYRQA 155
Query: 228 VLSTAKRLVAAIDGLPDPGGP-QVKDNKRESNFRTKEETEQKRGQFSLVVGGLLVVAFVV 286
L RL + G DPG P ++ +N T+EETE ++V LLV+ ++
Sbjct: 156 TLDGINRLSTVLGGGEDPGPPAEIVRTTLPTNIPTQEETESSNATTWIIV--LLVLGTII 213
Query: 287 PMLQYYAY 294
PM ++ +
Sbjct: 214 PMATWWVF 221
>emb|CAE20922.1| conserved hypothetical protein [Prochlorococcus marinus str. MIT
9313] gi|33863019|ref|NP_894579.1| hypothetical protein
PMT0747 [Prochlorococcus marinus str. MIT 9313]
Length = 227
Score = 75.5 bits (184), Expect = 2e-12
Identities = 56/193 (29%), Positives = 97/193 (50%), Gaps = 8/193 (4%)
Query: 106 VPAKDSYVVDDAGVLSRVTRSDLKGLLSDLESRKKFHINFITVRKLTSKADAFEYADQVL 165
V + +V D A VLSRV+RS ++G L +L ++ IT+RKL + ++
Sbjct: 37 VARPEGHVFDSADVLSRVSRSQIEGRLVEL-GNERLDARLITLRKLDYGVSLSNFGISLI 95
Query: 166 ERWYPSVEEGNDKGIVVLVTSQ-KEGAVTGGPAFVQAVGENILDAT--VAENLPVLATDE 222
+RW + E +V+L+ +Q K+ V + + + +L +T N PV+ E
Sbjct: 96 DRWSTNAGEKELPLLVMLIDAQTKQTVVLADTSLRSILPDALLQSTGRTTMNKPVVG-GE 154
Query: 223 KYNEAVLSTAKRLVAAIDGLPDPGGP-QVKDNKRESNFRTKEETEQKRGQFSLVVGGLLV 281
+Y +A RL +DG DPG P + +E+N ++E+T+ +LVV L+V
Sbjct: 155 RYQQASFEAIARLQVVLDGGEDPGPPIETFSAIKETNIPSQEQTQSSNA--TLVVVVLMV 212
Query: 282 VAFVVPMLQYYAY 294
V +VPM ++ +
Sbjct: 213 VGTIVPMATWWVF 225
>emb|CAE35276.1| putative membrane protein [Bordetella bronchiseptica RB50]
gi|33603886|ref|NP_891446.1| putative membrane protein
[Bordetella bronchiseptica RB50]
Length = 304
Score = 44.3 bits (103), Expect = 0.004
Identities = 40/173 (23%), Positives = 74/173 (42%), Gaps = 3/173 (1%)
Query: 90 FLSGNALASEFDVLNEVPAKDSYVVDDAGVLSRVTRSDLKGLLSDLESRKKFHINFITVR 149
+L+G AL ++ L VP + VVD +GVL R L+ L+ LE RK + + V
Sbjct: 21 WLAGWALLAQAQQLAPVPEFGARVVDQSGVLDAAQRQRLEAQLAALEQRKGAQVAVLIVP 80
Query: 150 KLTSKADAFEYADQVLERWYPSVEEGNDKGIVVLVTSQKEGAVTGGPAFVQAVGENILDA 209
T+ +YA + E+W ++ +D ++++ + + + G A+ ++
Sbjct: 81 S-TAPETIEQYATRAFEKWKIGRDKVDDGVLLLMASDDRALRIEVGYGLEGAIPDSAAGR 139
Query: 210 TVAENLPVLATDEKYNEAVLSTAKRLVAAIDG--LPDPGGPQVKDNKRESNFR 260
+ E + + AV + L I+G LP P + R + R
Sbjct: 140 IINEYIVPRLRAGDWPGAVQAGVTALERRIEGEELPPPAASGRDEGSRLAGIR 192
>emb|CAE40547.1| putative membrane protein [Bordetella pertussis Tohama I]
gi|33591415|ref|NP_879059.1| putative membrane protein
[Bordetella pertussis Tohama I]
Length = 300
Score = 44.3 bits (103), Expect = 0.004
Identities = 40/173 (23%), Positives = 74/173 (42%), Gaps = 3/173 (1%)
Query: 90 FLSGNALASEFDVLNEVPAKDSYVVDDAGVLSRVTRSDLKGLLSDLESRKKFHINFITVR 149
+L+G AL ++ L VP + VVD +GVL R L+ L+ LE RK + + V
Sbjct: 21 WLAGWALLAQAQQLAPVPEFGARVVDQSGVLDAAQRQRLEAQLAALEQRKGAQVAVLIVP 80
Query: 150 KLTSKADAFEYADQVLERWYPSVEEGNDKGIVVLVTSQKEGAVTGGPAFVQAVGENILDA 209
T+ +YA + E+W ++ +D ++++ + + + G A+ ++
Sbjct: 81 S-TAPETIEQYATRAFEKWKIGRDKVDDGVLLLMASDDRALRIEVGYGLEGAIPDSAAGR 139
Query: 210 TVAENLPVLATDEKYNEAVLSTAKRLVAAIDG--LPDPGGPQVKDNKRESNFR 260
+ E + + AV + L I+G LP P + R + R
Sbjct: 140 IINEYIVPRLRAGDWPGAVQAGVTALERRIEGEELPPPAASGRDEGSRLAGIR 192
>ref|ZP_00139078.1| COG1512: Beta-propeller domains of methanol dehydrogenase type
[Pseudomonas aeruginosa UCBPP-PA14]
Length = 444
Score = 42.4 bits (98), Expect = 0.016
Identities = 41/145 (28%), Positives = 64/145 (43%), Gaps = 7/145 (4%)
Query: 105 EVPAKDSYVVDDAGVLSRVTRSDLKGLLSDLESRKKFHINFITVRKLTSKADAFE-YADQ 163
EVPA V D L R+ L+ L+ LE+RK + + V ++ D+ E YA +
Sbjct: 59 EVPAPARRVTDLTATLDAAERARLEASLAALEARKGAQVAILMVP--STYPDSIEAYATR 116
Query: 164 VLERWYPSVEEGNDKGIVVLVT-SQKEGAVTGGPAFVQAVGENILDATVAENLPVLATDE 222
V E W +G D G++VLV + + G + + + E + +
Sbjct: 117 VFEAWKLG-RKGIDDGVLVLVAKDDRRMRIEVGYGLEGTITDIDAGRIIREYMTPAFRQQ 175
Query: 223 KYNEAVLSTAKRLVAAIDG--LPDP 245
Y + + A+RLV IDG LP P
Sbjct: 176 DYAGGLEAAAQRLVRLIDGEALPPP 200
>ref|NP_250142.1| hypothetical protein PA1451 [Pseudomonas aeruginosa PAO1]
gi|9947402|gb|AAG04840.1| conserved hypothetical protein
[Pseudomonas aeruginosa PAO1] gi|11347786|pir||E83465
conserved hypothetical protein PA1451 [imported] -
Pseudomonas aeruginosa (strain PAO1)
Length = 447
Score = 42.0 bits (97), Expect = 0.021
Identities = 41/145 (28%), Positives = 64/145 (43%), Gaps = 7/145 (4%)
Query: 105 EVPAKDSYVVDDAGVLSRVTRSDLKGLLSDLESRKKFHINFITVRKLTSKADAFE-YADQ 163
EVPA V D L R+ L+ L+ LE+RK + + V ++ D+ E YA +
Sbjct: 68 EVPALARRVTDLTATLDAAERARLEASLAALEARKGAQVAILMVP--STYPDSIEAYATR 125
Query: 164 VLERWYPSVEEGNDKGIVVLVT-SQKEGAVTGGPAFVQAVGENILDATVAENLPVLATDE 222
V E W +G D G++VLV + + G + + + E + +
Sbjct: 126 VFEAWKLG-RKGIDDGVLVLVAKDDRRMRIEVGYGLEGTITDIDAGRIIREYMTPAFRQQ 184
Query: 223 KYNEAVLSTAKRLVAAIDG--LPDP 245
Y + + A+RLV IDG LP P
Sbjct: 185 DYAGGLEAAAQRLVRLIDGEALPPP 209
>ref|YP_098199.1| hypothetical protein BF0914 [Bacteroides fragilis YCH46]
gi|52215072|dbj|BAD47665.1| conserved hypothetical
protein [Bacteroides fragilis YCH46]
Length = 306
Score = 42.0 bits (97), Expect = 0.021
Identities = 37/135 (27%), Positives = 64/135 (47%), Gaps = 5/135 (3%)
Query: 109 KDSYVVDDAGVLSRVTRSDLKGLLSDLESRKKFHINFITVRKLTSKADAFEYADQVLERW 168
K YV + AG+LS+ ++ +L LE + V + K D FE++ Q+L +W
Sbjct: 37 KMQYVCNPAGILSQQACDEIDAMLYALEQQTGIETVVAIVPSIGDK-DCFEFSHQLLNQW 95
Query: 169 YPSVEEGNDKGIVV-LVTSQKEGAVTGGPAFVQAVGENILD-ATVAENLPVLATDEKYNE 226
++G D G+V+ LVT Q+ G + + I + E +P L E +N+
Sbjct: 96 GVG-KKGKDNGLVILLVTDQRCIQFYTGYGLEGILPDAICKRIQMQEMIPYLKKGE-WNQ 153
Query: 227 AVLSTAKRLVAAIDG 241
+L+ K + +DG
Sbjct: 154 GMLAGVKAVCQRLDG 168
>emb|CAH06579.1| conserved hypothetical protein [Bacteroides fragilis NCTC 9343]
gi|60680387|ref|YP_210531.1| hypothetical protein BF0836
[Bacteroides fragilis NCTC 9343]
Length = 306
Score = 41.6 bits (96), Expect = 0.028
Identities = 37/135 (27%), Positives = 64/135 (47%), Gaps = 5/135 (3%)
Query: 109 KDSYVVDDAGVLSRVTRSDLKGLLSDLESRKKFHINFITVRKLTSKADAFEYADQVLERW 168
K YV + AG+LS+ ++ +L LE + V + K D FE++ Q+L +W
Sbjct: 37 KMQYVCNPAGILSQQACDEIDAMLYALEQQTGIETVVAIVPSVGDK-DCFEFSHQLLNQW 95
Query: 169 YPSVEEGNDKGIVV-LVTSQKEGAVTGGPAFVQAVGENILD-ATVAENLPVLATDEKYNE 226
++G D G+V+ LVT Q+ G + + I + E +P L E +N+
Sbjct: 96 GVG-KKGKDNGLVILLVTDQRCIQFYTGYGLEGILPDAICKRIQMQEMIPYLKKGE-WNQ 153
Query: 227 AVLSTAKRLVAAIDG 241
+L+ K + +DG
Sbjct: 154 GMLAGVKAVCQRLDG 168
>ref|NP_971566.1| hypothetical protein TDE0956 [Treponema denticola ATCC 35405]
gi|41816661|gb|AAS11447.1| conserved hypothetical
protein [Treponema denticola ATCC 35405]
Length = 264
Score = 41.6 bits (96), Expect = 0.028
Identities = 28/104 (26%), Positives = 50/104 (47%), Gaps = 5/104 (4%)
Query: 106 VPAKDSYVVDDAGVLSRVTRSDLKGLLSDLESRKKFHINFITVRKLTSKADAFEYADQVL 165
VP+ VVD AG+LSR ++ L DL+ + K I + + L ++ +Y+ QV
Sbjct: 28 VPSLSGPVVDKAGILSRSEFEKIENFLLDLDQKSKVQIAVLIIPSLEGES-IEDYSMQVA 86
Query: 166 ERWYPSVEEGNDKGIVVLVTSQKEGAVTGGPAFVQAVGENILDA 209
E W +E + ++V+ K+ + G + EN+ D+
Sbjct: 87 EEWKLGDKEKDSGALLVVAVKDKKLRIEVG----YGLEENLTDS 126
Database: nr
Posted date: Jul 5, 2005 12:34 AM
Number of letters in database: 863,360,394
Number of sequences in database: 2,540,612
Lambda K H
0.315 0.133 0.371
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 494,272,238
Number of Sequences: 2540612
Number of extensions: 20563187
Number of successful extensions: 59066
Number of sequences better than 10.0: 87
Number of HSP's better than 10.0 without gapping: 25
Number of HSP's successfully gapped in prelim test: 62
Number of HSP's that attempted gapping in prelim test: 58983
Number of HSP's gapped (non-prelim): 125
length of query: 298
length of database: 863,360,394
effective HSP length: 127
effective length of query: 171
effective length of database: 540,702,670
effective search space: 92460156570
effective search space used: 92460156570
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 74 (33.1 bits)
Lotus: description of TM0211.11