BLAST2 result
BLASTP 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TM0207.9
(758 letters)
Database: nr
2,540,612 sequences; 863,360,394 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAP54617.1| putative non-LTR retroelement reverse transcripta... 348 5e-94
pir||G96509 protein F27F5.21 [imported] - Arabidopsis thaliana g... 347 6e-94
gb|AAG51783.1| reverse transcriptase, putative; 16838-20266 [Ara... 345 3e-93
ref|XP_475290.1| hypothetical protein [Oryza sativa (japonica cu... 339 2e-91
gb|AAX95232.1| retrotransposon protein, putative, unclassified [... 336 2e-90
gb|AAP53315.1| putative reverse transcriptase [Oryza sativa (jap... 327 7e-88
gb|AAP52395.1| putative retroelement [Oryza sativa (japonica cul... 313 1e-83
gb|AAM01179.2| Putative retroelement [Oryza sativa (japonica cul... 313 1e-83
gb|AAB82639.1| putative non-LTR retroelement reverse transcripta... 307 7e-82
gb|AAD21778.1| putative non-LTR retroelement reverse transcripta... 307 1e-81
emb|CAE04866.2| OSJNBa0086O06.14 [Oryza sativa (japonica cultiva... 305 3e-81
gb|AAQ19327.1| bZIP-like protein [Oryza sativa (japonica cultiva... 301 5e-80
gb|AAV32224.1| hypothetical protein [Oryza sativa (japonica cult... 296 2e-78
gb|AAD29058.1| putative non-LTR retroelement reverse transcripta... 294 6e-78
emb|CAB75484.1| putative protein [Arabidopsis thaliana] gi|11357... 291 7e-77
gb|AAD24831.1| putative non-LTR retroelement reverse transcripta... 290 2e-76
gb|AAD20714.1| putative non-LTR retroelement reverse transcripta... 289 2e-76
gb|AAD03565.2| putative non-LTR retroelement reverse transcripta... 288 4e-76
pir||T00833 RNA-directed DNA polymerase homolog T13L16.7 - Arabi... 288 4e-76
pir||G86379 protein F5A9.24 [imported] - Arabidopsis thaliana gi... 283 1e-74
>gb|AAP54617.1| putative non-LTR retroelement reverse transcriptase [Oryza sativa
(japonica cultivar-group)] gi|37536056|ref|NP_922330.1|
putative non-LTR retroelement reverse transcriptase
[Oryza sativa (japonica cultivar-group)]
gi|10140689|gb|AAG13524.1| putative non-LTR retroelement
reverse transcriptase [Oryza sativa (japonica
cultivar-group)]
Length = 1382
Score = 348 bits (892), Expect = 5e-94
Identities = 190/444 (42%), Positives = 265/444 (58%), Gaps = 6/444 (1%)
Query: 250 EDGWRMRTYPGF--LMDIF-STLFTTSNPMGIEAATSLVANRLNKGHLAILNTPFSGEKV 306
+DG R + G + ++F LF++ +E + N++ L ++ E++
Sbjct: 390 DDGSRCISQEGIKRMAEVFYENLFSSEPCDSMEEVLDAIPNKVGDFINGELGKQYTNEEI 449
Query: 307 REPLFQMHPTKASGLDGLHTLFYQKFWHIVGDDVAHFCLSVLQGRVSPGTIIPTLLVLIP 366
+ LFQM TKA G DG LFYQ W I+ + + + L G P + +++VLIP
Sbjct: 450 KTALFQMGSTKAPGPDGFPALFYQTHWGILEEHICNAVRGFLLGEEIPEGLCDSVVVLIP 509
Query: 367 KIKKSVHATHFRPISLCNVPFKIIT*TLANKLKIVLPDIISGPQSAFVPGRLVTDNALVA 426
K+ + H + FRPISLCNV +KI + LAN+LK LPDI+S QSAFVPGRL+TD+ALVA
Sbjct: 510 KVNNASHLSKFRPISLCNVLYKIASKVLANRLKPFLPDIVSEFQSAFVPGRLITDSALVA 569
Query: 427 YECFHFMKKKIYGCNGIMALKLDMSKAYDRVEWPFLRSALEKMGFPVNWVSFIMDYVTTV 486
YEC H ++K+ + N ALK+DM KAYDRVEW +L L K+GF +W++ +M V++V
Sbjct: 570 YECLHTIRKQ-HNKNPFFALKIDMMKAYDRVEWAYLSGCLSKLGFSQDWINTVMRCVSSV 628
Query: 487 LFQVMLNGNPQVPFDPGRGLRQGDPLSPYLFLICGEVFSALIQRKIGASHLSGIKIARNV 546
+ V +NG P P RG+RQGDP+SPYLFL+C E S L+ +K A L GIK R+
Sbjct: 629 RYAVKINGELTKPVVPSRGIRQGDPISPYLFLLCTEGLSCLLHKKEVAGELQGIKNGRH- 687
Query: 547 SAPVISHLLFADDNVIFARATREEASCVKGILAEYDKVYVQVINFDKSMLSYSRNVPSLY 606
P ISHLLFADD++ FA+A +K L Y Q IN KS + + + P
Sbjct: 688 -GPPISHLLFADDSIFFAKADSRNVQALKNTLRSYCSASGQKINLHKSSIFFGKRCPDAV 746
Query: 607 FNELKMLLGVKAMDNYDRYLGLPTIIGKSKTQIFRFVKERDWKKLKGRKEPSLSRAGREV 666
+K L V D YLG+PT IG + T F+F+ ER WK++ G + LSRAG E
Sbjct: 747 KISVKSCLQVDNEVLQDSYLGMPTEIGLATTNFFKFLPERIWKRVNGWTDRPLSRAGMET 806
Query: 667 LIKAVAQEIPAYIMSCFILPDNLC 690
++KAVAQ IP Y+MSCF +P ++C
Sbjct: 807 MLKAVAQAIPNYVMSCFRIPVSIC 830
>pir||G96509 protein F27F5.21 [imported] - Arabidopsis thaliana
gi|7767672|gb|AAF69169.1| F27F5.21 [Arabidopsis
thaliana]
Length = 1023
Score = 347 bits (891), Expect = 6e-94
Identities = 190/430 (44%), Positives = 263/430 (60%), Gaps = 4/430 (0%)
Query: 266 FSTLFTTSNPMGIEAATSLVANRLNKGHLAILNTPFSGEKVREPLFQMHPTKASGLDGLH 325
F TLF SNP I + S V + L TP + ++VR LF MHP KA G DG+
Sbjct: 243 FETLFNKSNPQNIAESLSEVKTLITDQINDFLTTPATEDEVRAALFLMHPEKAPGPDGMT 302
Query: 326 TLFYQKFWHIVGDDVAHFCLSVLQGRVSPGTIIPTLLVLIPKIKKSVHATHFRPISLCNV 385
LF+QK W + D+ S LQ V + T + LIPK ++ T RPISLCNV
Sbjct: 303 ALFFQKPWATIKMDMLFLVNSFLQDGVFDKQLNTTNICLIPKTERPTRMTELRPISLCNV 362
Query: 386 PFKIIT*TLANKLKIVLPDIISGPQSAFVPGRLVTDNALVAYECFHFMKKKIYGCNG-IM 444
+KII+ L +LK +LP +IS SAFV GRL++DN L+A E FH ++ C G M
Sbjct: 363 GYKIISKILCQRLKKILPSLISETHSAFVEGRLISDNILIAQEMFHGLRTNP-SCKGKFM 421
Query: 445 ALKLDMSKAYDRVEWPFLRSALEKMGFPVNWVSFIMDYVTTVLFQVMLNGNPQVPFDPGR 504
A+K DMSKAYDRVEW F+ L+KMGF W+S+IM +TTV ++V+LNG P+ P R
Sbjct: 422 AIKTDMSKAYDRVEWNFIEELLKKMGFCEKWISWIMWCITTVQYRVLLNGQPRGLIVPKR 481
Query: 505 GLRQGDPLSPYLFLICGEVFSALIQRKIGASHLSGIKIARNVSAPVISHLLFADDNVIFA 564
GLRQGDPLSPYLF++C EV A I++ ++GIK+A ++P +SHLLFA+D++ F
Sbjct: 482 GLRQGDPLSPYLFILCTEVLIANIRKAEQEKLITGIKVA--TASPSVSHLLFANDSLFFC 539
Query: 565 RATREEASCVKGILAEYDKVYVQVINFDKSMLSYSRNVPSLYFNELKMLLGVKAMDNYDR 624
+A +E+ + GIL +Y+ V Q+INF KS + + V E+K LG+ ++
Sbjct: 540 KANKEQCGVILGILKQYEAVSGQMINFSKSSIQFGHKVGDDIKAEIKSALGIHSIGGMGS 599
Query: 625 YLGLPTIIGKSKTQIFRFVKERDWKKLKGRKEPSLSRAGREVLIKAVAQEIPAYIMSCFI 684
YLGLP +G SKT+IF FV++R ++ G LS+ G+EV+IK+V +P Y+MSCF
Sbjct: 600 YLGLPESLGGSKTRIFSFVRDRLQTRINGWSAKFLSKGGKEVMIKSVVAVLPTYVMSCFR 659
Query: 685 LPDNLCADST 694
LP + + T
Sbjct: 660 LPKTITSKLT 669
>gb|AAG51783.1| reverse transcriptase, putative; 16838-20266 [Arabidopsis thaliana]
gi|25405244|pir||E96519 probable reverse transcriptase,
16838-20266 [imported] - Arabidopsis thaliana
Length = 1142
Score = 345 bits (885), Expect = 3e-93
Identities = 185/433 (42%), Positives = 267/433 (60%), Gaps = 10/433 (2%)
Query: 266 FSTLFTTSNPMGIEAATS----LVANRLNKGHLAILNTPFSGEKVREPLFQMHPTKASGL 321
F LFTT+NP + A L+ +R+N +L + +VR LF +HP KA G
Sbjct: 177 FQNLFTTANPQVFDEALGEVQVLITDRIND----LLTADATECEVRAALFMIHPEKAPGP 232
Query: 322 DGLHTLFYQKFWHIVGDDVAHFCLSVLQGRVSPGTIIPTLLVLIPKIKKSVHATHFRPIS 381
DG+ LF+QK W I+ D+ S LQ V + T + LIPK ++ T RPIS
Sbjct: 233 DGMTALFFQKSWAIIKSDLLSLVNSFLQEGVFDKRLNTTNICLIPKTERPTRMTELRPIS 292
Query: 382 LCNVPFKIIT*TLANKLKIVLPDIISGPQSAFVPGRLVTDNALVAYECFHFMKKKIYGCN 441
LCNV +K+I+ L +LK VLP++IS QSAFV GRL++DN L+A E FH ++ +
Sbjct: 293 LCNVGYKVISKILCQRLKTVLPNLISETQSAFVDGRLISDNILIAQEMFHGLRTNSSCKD 352
Query: 442 GIMALKLDMSKAYDRVEWPFLRSALEKMGFPVNWVSFIMDYVTTVLFQVMLNGNPQVPFD 501
MA+K DMSKAYD+VEW F+ + L KMGF W+S+IM +TTV ++V++NG P+
Sbjct: 353 KFMAIKTDMSKAYDQVEWNFIEALLRKMGFCEKWISWIMWCITTVQYKVLINGQPKGLII 412
Query: 502 PGRGLRQGDPLSPYLFLICGEVFSALIQRKIGASHLSGIKIARNVSAPVISHLLFADDNV 561
P RGLRQGDPLSPYLF++C EV A I++ + ++GIK+A +P +SHLLFADD++
Sbjct: 413 PERGLRQGDPLSPYLFILCTEVLIANIRKAERQNLITGIKVA--TPSPAVSHLLFADDSL 470
Query: 562 IFARATREEASCVKGILAEYDKVYVQVINFDKSMLSYSRNVPSLYFNELKMLLGVKAMDN 621
F +A +E+ + IL +Y+ V Q INF KS + + V ++K++LG+ +
Sbjct: 471 FFCKANKEQCGIILEILKQYESVSGQQINFSKSSIQFGHKVEDSIKADIKLILGIHNLGG 530
Query: 622 YDRYLGLPTIIGKSKTQIFRFVKERDWKKLKGRKEPSLSRAGREVLIKAVAQEIPAYIMS 681
YLGLP +G SKT++F FV++R ++ G LS+ G+EV+IK+VA +P Y+MS
Sbjct: 531 MGSYLGLPESLGGSKTKVFSFVRDRLQSRINGWSAKFLSKGGKEVMIKSVAATLPRYVMS 590
Query: 682 CFILPDNLCADST 694
CF LP + + T
Sbjct: 591 CFRLPKAITSKLT 603
>ref|XP_475290.1| hypothetical protein [Oryza sativa (japonica cultivar-group)]
gi|49328177|gb|AAT58873.1| hypothetical protein [Oryza
sativa (japonica cultivar-group)]
Length = 1264
Score = 339 bits (870), Expect = 2e-91
Identities = 185/430 (43%), Positives = 263/430 (61%), Gaps = 2/430 (0%)
Query: 261 FLMDIFSTLFTTSNPMGIEAATSLVANRLNKGHLAILNTPFSGEKVREPLFQMHPTKASG 320
F+ + + LF ++ ++A V R+ L P+ E+V L M KA G
Sbjct: 736 FISNQYQQLFRSNGCSQMDAVLQCVQARVTPEMREGLAAPYQREEVWVALKDMGDLKAPG 795
Query: 321 LDGLHTLFYQKFWHIVGDDVAHFCLSVLQGRVSPGTIIPTLLVLIPKIKKSVHATHFRPI 380
DG+ +FY+KF + GD V L+VL G P T++VLIPK K+ RPI
Sbjct: 796 ADGIPAIFYKKFLSLAGDKVKDEVLAVLNGGDMPQGWNDTVVVLIPKTKQPDTLKDLRPI 855
Query: 381 SLCNVPFKIIT*TLANKLKIVLPDIISGPQSAFVPGRLVTDNALVAYECFHFMKKKIYGC 440
SLCNV +K+I+ + N+LK+VL +IIS QSAFVP RL+T N L+AYE H++ ++ G
Sbjct: 856 SLCNVAYKLISKVIVNRLKVVLLEIISPSQSAFVPRRLITYNVLLAYELTHYLNQRKKGK 915
Query: 441 NGIMALKLDMSKAYDRVEWPFLRSALEKMGFPVNWVSFIMDYVTTVLFQVMLNGNPQVPF 500
NG+ A+KLDMSKAYDRVEW FLR + ++GF WV+ +M VT+V +++ +NG
Sbjct: 916 NGVAAIKLDMSKAYDRVEWDFLRHMMLRLGFHDQWVNLVMKCVTSVTYRIKINGEHSDQI 975
Query: 501 DPGRGLRQGDPLSPYLFLICGEVFSALIQRKIGASHLSGIKIARNVSAPVISHLLFADDN 560
P RGLRQGDPLSPYLF+IC E SAL+Q+ + GIK+ R+ P I+HL FADD+
Sbjct: 976 YPQRGLRQGDPLSPYLFIICAEGLSALLQKAQADGKIEGIKVCRD--TPRINHLFFADDS 1033
Query: 561 VIFARATREEASCVKGILAEYDKVYVQVINFDKSMLSYSRNVPSLYFNELKMLLGVKAMD 620
++ RA + +A ++ +L Y+ QVIN DKS + +S N E++ L +
Sbjct: 1034 LVLMRAGQNDAQELRRVLNIYEVASGQVINKDKSSVLFSPNTLQSDRMEVRSALCINQEA 1093
Query: 621 NYDRYLGLPTIIGKSKTQIFRFVKERDWKKLKGRKEPSLSRAGREVLIKAVAQEIPAYIM 680
+RYLGLP IGKS+ + F ++K + W +++G +E LS+AG+E+L+KAVAQ IP Y M
Sbjct: 1094 KNERYLGLPVSIGKSRRKAFEYIKRKVWLRIQGWQEKLLSKAGKEILVKAVAQAIPTYAM 1153
Query: 681 SCFILPDNLC 690
SCF L LC
Sbjct: 1154 SCFDLTKGLC 1163
>gb|AAX95232.1| retrotransposon protein, putative, unclassified [Oryza sativa
(japonica cultivar-group)] gi|62733010|gb|AAX95129.1|
retrotransposon protein, putative, unclassified [Oryza
sativa (japonica cultivar-group)]
Length = 1324
Score = 336 bits (861), Expect = 2e-90
Identities = 189/454 (41%), Positives = 268/454 (58%), Gaps = 6/454 (1%)
Query: 247 MRAEDGWRMRTYPGFLM---DIFSTLFTTSNPMGIEAATSLVANRLNKGHLAILNTPFSG 303
+R +DG + G L + + LFT P+ ++ V R+ L +
Sbjct: 827 LRRDDGEVITDEAGSLSLISEFYKQLFTAGVPLNLDELLQNVPKRVTSTMNDELMKGVTT 886
Query: 304 EKVREPLFQMHPTKAS-GLDGLHTLFYQKFWHIVGDDVAHFCLSVLQGRVSPGTIIPTLL 362
E++++ L + KA G DG+ LFY++FW VGDD+ H L G P + T++
Sbjct: 887 EEIKKALDSIGDLKAPPGSDGMPALFYKQFWECVGDDIVHEVKDFLGGGEMPDSWNDTVV 946
Query: 363 VLIPKIKKSVHATHFRPISLCNVPFKIIT*TLANKLKIVLPDIISGPQSAFVPGRLVTDN 422
VLIPK+ RPISLCNV +KI + LAN+LK +L +IIS Q AFVP R++TDN
Sbjct: 947 VLIPKVPNPERIKDLRPISLCNVVYKIASKVLANRLKPLLSEIISPIQIAFVPQRMITDN 1006
Query: 423 ALVAYECFHFMKKKIYGCNGIMALKLDMSKAYDRVEWPFLRSALEKMGFPVNWVSFIMDY 482
L+AYE HF+K K G G A+K MSKAYDRVEW FL + K+GF NWV +M
Sbjct: 1007 ILLAYELTHFLKTKRRGSVGFAAVKQGMSKAYDRVEWGFLEKMMLKLGFDRNWVFIVMKC 1066
Query: 483 VTTVLFQVMLNGNPQVPFDPGRGLRQGDPLSPYLFLICGEVFSALIQRKIGASHLSGIKI 542
VT+V +++ +NG +P GLRQGDP+SPYLF IC E FS L+ LS IK+
Sbjct: 1067 VTSVTYRIKVNGEFTEQINPTGGLRQGDPISPYLFFICAEGFSTLLNAAEERGDLSVIKV 1126
Query: 543 ARNVSAPVISHLLFADDNVIFARATREEASCVKGILAEYDKVYVQVINFDKSMLSYSRNV 602
+N AP I+HLLFADD+++ + A+C++ +L+ Y++ + IN +KS + +SRN+
Sbjct: 1127 CQN--APSINHLLFADDSLLLLKTDEGSAACLQNVLSLYERCSGETINKEKSSIMFSRNI 1184
Query: 603 PSLYFNELKMLLGVKAMDNYDRYLGLPTIIGKSKTQIFRFVKERDWKKLKGRKEPSLSRA 662
+ L + ++YLGLP +G+SK + ++KER WKK++G KE LSRA
Sbjct: 1185 KEVNKQIFMGALDIGVGAWNEKYLGLPVYMGRSKAKTSSYLKERVWKKIQGWKEKLLSRA 1244
Query: 663 GREVLIKAVAQEIPAYIMSCFILPDNLCADSTGV 696
G++VLIKAVAQ IPA+ MSCF L LC + T +
Sbjct: 1245 GKDVLIKAVAQAIPAFAMSCFNLTKGLCDEITSL 1278
>gb|AAP53315.1| putative reverse transcriptase [Oryza sativa (japonica
cultivar-group)] gi|37533452|ref|NP_921028.1| putative
reverse transcriptase [Oryza sativa (japonica
cultivar-group)] gi|20279456|gb|AAM18736.1| putative
reverse transcriptase [Oryza sativa (japonica
cultivar-group)]
Length = 1509
Score = 327 bits (839), Expect = 7e-88
Identities = 181/394 (45%), Positives = 242/394 (60%), Gaps = 27/394 (6%)
Query: 297 LNTPFSGEKVREPLFQMHPTKASGLDGLHTLFYQKFWHIVGDDVAHFCLSVLQGRVSPGT 356
L F+ E+V+E L + KA G DG+ FY+ W +VG+ V L VL+G P
Sbjct: 650 LRAEFTREEVKEALDAIGDLKAPGPDGMPAGFYKACWDVVGEKVTVEVLEVLRGGAIPEG 709
Query: 357 IIPTLLVLIPKIKKSVHATHFRPISLCNVPFKIIT*TLANKLKIVLPDIISGPQSAFVPG 416
T +VLIPK+ LAN+LK +LPD+IS QSAFVPG
Sbjct: 710 WNDTTIVLIPKV-------------------------LANRLKKILPDVISPAQSAFVPG 744
Query: 417 RLVTDNALVAYECFHFMKKKIYGCNGIMALKLDMSKAYDRVEWPFLRSALEKMGFPVNWV 476
RL++DN L+AYE H+M+ K G G A KLDMSKAYDRVEW FL + K+GF +WV
Sbjct: 745 RLISDNILIAYEMTHYMRNKRSGQVGYAAFKLDMSKAYDRVEWSFLHDMMLKLGFHTDWV 804
Query: 477 SFIMDYVTTVLFQVMLNGNPQVPFDPGRGLRQGDPLSPYLFLICGEVFSALIQRKIGASH 536
+ IM V+TV +++ +NG F P RGLRQGDPLSPYLFL+C E FSAL+ +
Sbjct: 805 NLIMKCVSTVTYRIRVNGELSESFSPERGLRQGDPLSPYLFLLCAEGFSALLSKTEEEGR 864
Query: 537 LSGIKIARNVSAPVISHLLFADDNVIFARATREEASCVKGILAEYDKVYVQVINFDKSML 596
L GI+I + AP +SHLLFADD++I RA EA ++ IL Y++ QVIN DKS +
Sbjct: 865 LHGIRICQ--GAPSVSHLLFADDSLILCRANGGEAQQLQTILQIYEECSGQVINKDKSAV 922
Query: 597 SYSRNVPSLYFNELKMLLGVKAMDNYDRYLGLPTIIGKSKTQIFRFVKERDWKKLKGRKE 656
+S N SL + L ++ ++YLGLP +G+S+T+IF ++KER W++++G KE
Sbjct: 923 MFSPNTSSLEKGAVMAALNMQRETTNEKYLGLPVFVGRSRTKIFSYLKERIWQRIQGWKE 982
Query: 657 PSLSRAGREVLIKAVAQEIPAYIMSCFILPDNLC 690
LSRAG+E+LIKAVAQ IP + M CF L +LC
Sbjct: 983 KLLSRAGKEILIKAVAQVIPTFAMGCFELTKDLC 1016
>gb|AAP52395.1| putative retroelement [Oryza sativa (japonica cultivar-group)]
gi|37531612|ref|NP_920108.1| putative retroelement [Oryza
sativa (japonica cultivar-group)]
Length = 1694
Score = 313 bits (802), Expect = 1e-83
Identities = 174/431 (40%), Positives = 250/431 (57%), Gaps = 3/431 (0%)
Query: 264 DIFSTLFTTSNPMGIEAATSLVANRLNKGHLAILNTPFSGEKVREPLFQMHPTKASGLDG 323
+ F LFT + TSL+ ++ L FS E++ LFQ+ P KA G DG
Sbjct: 1005 EYFQRLFTADPSIDHSRVTSLMKPKVTDAMNEELCKTFSEEEIANALFQIGPLKAPGPDG 1064
Query: 324 LHTLFYQKFWHIVGDDVAHFCLSVLQGRVSPGTIIPTLLVLIPKIKKSVHATHFRPISLC 383
FYQ+ W I+ DD+ P + T +VLIPK ++ FRPISLC
Sbjct: 1065 FPGRFYQRNWAILKDDIVRAVQEFFSLGTMPSGVNETAIVLIPKTEQPQELKDFRPISLC 1124
Query: 384 NVPFKIIT*TLANKLKIVLPDIISGPQSAFVPGRLVTDNALVAYECFHFMKKKIYGCNGI 443
NV +KI++ L N+L+ +L D++S QSAFVPGRL+TDNAL+A+E FH +++ N
Sbjct: 1125 NVVYKIVSKCLVNRLRPILDDLVSQNQSAFVPGRLITDNALIAFEYFHHIQRNKNPENAY 1184
Query: 444 MALKLDMSKAYDRVEWPFLRSALEKMGFPVNWVSFIMDYVTTVLFQVMLNGNPQVPFDPG 503
A KLD+SKAYDRV+W FL A+ K+GF WV +IM +T V + V LNG F P
Sbjct: 1185 SAYKLDLSKAYDRVDWEFLEQAMVKLGFAHCWVKWIMACITLVRYAVKLNGTLLNTFAPS 1244
Query: 504 RGLRQGDPLSPYLFLICGEVFSALIQRKIGASHLSGIKIARNVSAPVISHLLFADDNVIF 563
RGLRQGDPLSP+LFL + S L++ K+ ++ I I R+ AP + HLLFADD +F
Sbjct: 1245 RGLRQGDPLSPFLFLFVADGLSFLLEEKVDQGAMNPIHICRH--APAVLHLLFADDTPLF 1302
Query: 564 ARATREEASCVKGILAEYDKVYVQVINFDKSMLSYSRNVPSLYFNELKMLLGVKAMDNYD 623
+A ++A +K +L Y Q+IN K + + ++ P+ N++K L + + D
Sbjct: 1303 FKAANDQAVVMKEVLETYASCTGQLINPSKCSIMFGQSSPTAVQNQIKQTLQI-SNSFED 1361
Query: 624 RYLGLPTIIGKSKTQIFRFVKERDWKKLKGRKEPSLSRAGREVLIKAVAQEIPAYIMSCF 683
+YLG PT G+ F+ ++ER WK++ E LS G+E+LIKAV Q +P Y+M F
Sbjct: 1362 KYLGFPTPEGRMTKGKFQSLQERLWKRIMLWGEKFLSTGGKEILIKAVLQAMPVYVMGLF 1421
Query: 684 ILPDNLCADST 694
LP+++C + T
Sbjct: 1422 KLPESVCEELT 1432
>gb|AAM01179.2| Putative retroelement [Oryza sativa (japonica cultivar-group)]
Length = 1888
Score = 313 bits (802), Expect = 1e-83
Identities = 174/431 (40%), Positives = 250/431 (57%), Gaps = 3/431 (0%)
Query: 264 DIFSTLFTTSNPMGIEAATSLVANRLNKGHLAILNTPFSGEKVREPLFQMHPTKASGLDG 323
+ F LFT + TSL+ ++ L FS E++ LFQ+ P KA G DG
Sbjct: 962 EYFQRLFTADPSIDHSRVTSLMKPKVTDAMNEELCKTFSEEEIANALFQIGPLKAPGPDG 1021
Query: 324 LHTLFYQKFWHIVGDDVAHFCLSVLQGRVSPGTIIPTLLVLIPKIKKSVHATHFRPISLC 383
FYQ+ W I+ DD+ P + T +VLIPK ++ FRPISLC
Sbjct: 1022 FPGRFYQRNWAILKDDIVRAVQEFFSLGTMPSGVNETAIVLIPKTEQPQELKDFRPISLC 1081
Query: 384 NVPFKIIT*TLANKLKIVLPDIISGPQSAFVPGRLVTDNALVAYECFHFMKKKIYGCNGI 443
NV +KI++ L N+L+ +L D++S QSAFVPGRL+TDNAL+A+E FH +++ N
Sbjct: 1082 NVVYKIVSKCLVNRLRPILDDLVSQNQSAFVPGRLITDNALIAFEYFHHIQRNKNPENAY 1141
Query: 444 MALKLDMSKAYDRVEWPFLRSALEKMGFPVNWVSFIMDYVTTVLFQVMLNGNPQVPFDPG 503
A KLD+SKAYDRV+W FL A+ K+GF WV +IM +T V + V LNG F P
Sbjct: 1142 SAYKLDLSKAYDRVDWEFLEQAMVKLGFAHCWVKWIMACITLVRYAVKLNGTLLNTFAPS 1201
Query: 504 RGLRQGDPLSPYLFLICGEVFSALIQRKIGASHLSGIKIARNVSAPVISHLLFADDNVIF 563
RGLRQGDPLSP+LFL + S L++ K+ ++ I I R+ AP + HLLFADD +F
Sbjct: 1202 RGLRQGDPLSPFLFLFVADGLSFLLEEKVDQGAMNPIHICRH--APAVLHLLFADDTPLF 1259
Query: 564 ARATREEASCVKGILAEYDKVYVQVINFDKSMLSYSRNVPSLYFNELKMLLGVKAMDNYD 623
+A ++A +K +L Y Q+IN K + + ++ P+ N++K L + + D
Sbjct: 1260 FKAANDQAVVMKEVLETYASCTGQLINPSKCSIMFGQSSPTAVQNQIKQTLQI-SNSFED 1318
Query: 624 RYLGLPTIIGKSKTQIFRFVKERDWKKLKGRKEPSLSRAGREVLIKAVAQEIPAYIMSCF 683
+YLG PT G+ F+ ++ER WK++ E LS G+E+LIKAV Q +P Y+M F
Sbjct: 1319 KYLGFPTPEGRMTKGKFQSLQERLWKRIMLWGEKFLSTGGKEILIKAVLQAMPVYVMGLF 1378
Query: 684 ILPDNLCADST 694
LP+++C + T
Sbjct: 1379 KLPESVCEELT 1389
>gb|AAB82639.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
thaliana] gi|25408936|pir||A84888 hypothetical protein
At2g45230 [imported] - Arabidopsis thaliana
Length = 1374
Score = 307 bits (787), Expect = 7e-82
Identities = 164/413 (39%), Positives = 244/413 (58%), Gaps = 6/413 (1%)
Query: 278 IEAATSLVANRLNKGHLAILNTPFSGEKVREPLFQMHPTKASGLDGLHTLFYQKFWHIVG 337
+E T LV++++N LA P + E+V+ F ++P K G DG++ YQ+FW +G
Sbjct: 409 LENLTPLVSDQMNNNLLA----PITKEEVQRATFSINPHKCPGPDGMNGFLYQQFWETMG 464
Query: 338 DDVAHFCLSVLQGRVSPGTIIPTLLVLIPKIKKSVHATHFRPISLCNVPFKIIT*TLANK 397
D + + + + T + LIPKI K+ T FRPISLCNV +K+I +AN+
Sbjct: 465 DQITEMVQAFFRSGSIEEGMNKTNICLIPKILKAEKMTDFRPISLCNVIYKVIGKLMANR 524
Query: 398 LKIVLPDIISGPQSAFVPGRLVTDNALVAYECFHFMKKKIYGCNGIMALKLDMSKAYDRV 457
LK +LP +IS Q+AFV GRL++DN L+A+E H + +A+K D+SKAYDRV
Sbjct: 525 LKKILPSLISETQAAFVKGRLISDNILIAHELLHALSSNNKCSEEFIAIKTDISKAYDRV 584
Query: 458 EWPFLRSALEKMGFPVNWVSFIMDYVTTVLFQVMLNGNPQVPFDPGRGLRQGDPLSPYLF 517
EWPFL A+ +GF +W+ IM+ V +V +QV++NG P P RGLRQGDPLSPYLF
Sbjct: 585 EWPFLEKAMRGLGFADHWIRLIMECVKSVRYQVLINGTPHGEIIPSRGLRQGDPLSPYLF 644
Query: 518 LICGEVFSALIQRKIGASHLSGIKIARNVSAPVISHLLFADDNVIFARATREEASCVKGI 577
+IC E+ ++Q + ++G+K+AR AP ISHLLFADD++ + + E + I
Sbjct: 645 VICTEMLVKMLQSAEQKNQITGLKVAR--GAPPISHLLFADDSMFYCKVNDEALGQIIRI 702
Query: 578 LAEYDKVYVQVINFDKSMLSYSRNVPSLYFNELKMLLGVKAMDNYDRYLGLPTIIGKSKT 637
+ EY Q +N+ KS + + +++ +K LG++ YLGLP SK
Sbjct: 703 IEEYSLASGQRVNYLKSSIYFGKHISEERRCLVKRKLGIEREGGEGVYLGLPESFQGSKV 762
Query: 638 QIFRFVKERDWKKLKGRKEPSLSRAGREVLIKAVAQEIPAYIMSCFILPDNLC 690
++K+R KK+ G + LS G+E+L+KAVA +P Y MSCF +P +C
Sbjct: 763 ATLSYLKDRLGKKVLGWQSNFLSPGGKEILLKAVAMALPTYTMSCFKIPKTIC 815
>gb|AAD21778.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
thaliana] gi|25410938|pir||G84429 hypothetical protein
At2g01840 [imported] - Arabidopsis thaliana
Length = 1715
Score = 307 bits (786), Expect = 1e-81
Identities = 162/425 (38%), Positives = 252/425 (59%), Gaps = 2/425 (0%)
Query: 266 FSTLFTTSNPMGIEAATSLVANRLNKGHLAILNTPFSGEKVREPLFQMHPTKASGLDGLH 325
F+ LFTT+ E S +A ++ + L + ++VR+ +F + +A G DG
Sbjct: 755 FADLFTTTQTSDWEEIISGIAPKVTEQMNHELLQSVTDQEVRDAVFAIGADRAPGFDGFT 814
Query: 326 TLFYQKFWHIVGDDVAHFCLSVLQGRVSPGTIIPTLLVLIPKIKKSVHATHFRPISLCNV 385
FY W ++G+DV + V I T + LIPKI H + +RPISLC
Sbjct: 815 AAFYHHLWDLIGNDVCLMVRHFFESDVMDNQINQTQICLIPKIIDPKHMSDYRPISLCTA 874
Query: 386 PFKIIT*TLANKLKIVLPDIISGPQSAFVPGRLVTDNALVAYECFHFMKKKIYGCNGIMA 445
+KII+ L +LK L D+IS Q+AFVPG+ ++DN LVA+E H +K + +G +A
Sbjct: 875 SYKIISKILIKRLKQCLGDVISDSQAAFVPGQNISDNVLVAHELLHSLKSRRECQSGYVA 934
Query: 446 LKLDMSKAYDRVEWPFLRSALEKMGFPVNWVSFIMDYVTTVLFQVMLNGNPQVPFDPGRG 505
+K D+SKAYDRVEW FL + ++GF WV +IM VT+V ++V++NG+P P RG
Sbjct: 935 VKTDISKAYDRVEWNFLEKVMIQLGFAPRWVKWIMTCVTSVSYEVLINGSPYGKIFPSRG 994
Query: 506 LRQGDPLSPYLFLICGEVFSALIQRKIGASHLSGIKIARNVSAPVISHLLFADDNVIFAR 565
+RQGDPLSPYLFL C EV S ++++ + G+KI ++ A ISHLLFADD++ F R
Sbjct: 995 IRQGDPLSPYLFLFCAEVLSNMLRKAEVNKQIHGMKITKDCLA--ISHLLFADDSLFFCR 1052
Query: 566 ATREEASCVKGILAEYDKVYVQVINFDKSMLSYSRNVPSLYFNELKMLLGVKAMDNYDRY 625
A+ + + I +Y++ Q IN+ KS + + + +P++ L LLG+ + +Y
Sbjct: 1053 ASNQNIEQLALIFKKYEEASGQKINYAKSSIIFGQKIPTMRRQRLHRLLGIDNVRGGGKY 1112
Query: 626 LGLPTIIGKSKTQIFRFVKERDWKKLKGRKEPSLSRAGREVLIKAVAQEIPAYIMSCFIL 685
LGLP +G+ K ++F ++ + ++ +G LS AG+E++IKA+A +P Y M+CF+L
Sbjct: 1113 LGLPEQLGRRKVELFEYIVTKVKERTEGWAYNYLSPAGKEIVIKAIAMALPVYSMNCFLL 1172
Query: 686 PDNLC 690
P +C
Sbjct: 1173 PTLIC 1177
>emb|CAE04866.2| OSJNBa0086O06.14 [Oryza sativa (japonica cultivar-group)]
gi|50928373|ref|XP_473714.1| OSJNBa0086O06.14 [Oryza
sativa (japonica cultivar-group)]
Length = 1205
Score = 305 bits (782), Expect = 3e-81
Identities = 170/397 (42%), Positives = 242/397 (60%), Gaps = 2/397 (0%)
Query: 296 ILNTPFSGEKVREPLFQMHPTKASGLDGLHTLFYQKFWHIVGDDVAHFCLSVLQGRVSPG 355
+L PF+ E++ + LFQ+ P KA G DG F+Q+ W ++ DV +
Sbjct: 411 MLTKPFTDEEISDALFQIGPLKAPGPDGFPARFFQRNWGVLKRDVIEGVREFFETGEWKE 470
Query: 356 TIIPTLLVLIPKIKKSVHATHFRPISLCNVPFKIIT*TLANKLKIVLPDIISGPQSAFVP 415
+ T++V+IPK V FRP+SLCNV +K++ L N+L+ +L +IIS QSAFVP
Sbjct: 471 GMNDTVIVMIPKTNAPVEMKDFRPVSLCNVIYKVVAKCLVNRLRPLLQEIISETQSAFVP 530
Query: 416 GRLVTDNALVAYECFHFMKKKIYGCNGIMALKLDMSKAYDRVEWPFLRSALEKMGFPVNW 475
GR++TDNALVA+ECFH + K ALKLD+SKAYDRV+W FL AL+K+GF W
Sbjct: 531 GRMITDNALVAFECFHSIHKCTRESQDFCALKLDLSKAYDRVDWGFLDGALQKLGFGNIW 590
Query: 476 VSFIMDYVTTVLFQVMLNGNPQVPFDPGRGLRQGDPLSPYLFLICGEVFSALIQRKIGAS 535
+IM VT+V + V LNGN PF P RGLR+GDPL+PYLFL + S ++QR+
Sbjct: 591 RKWIMSCVTSVRYSVRLNGNMLEPFYPTRGLREGDPLNPYLFLFIADGLSNILQRRRDER 650
Query: 536 HLSGIKIARNVSAPVISHLLFADDNVIFARATREEASCVKGILAEYDKVYVQVINFDKSM 595
+ +K+ R SAP +SHLLFADD+++F +A +A+ +K L Y++ Q+IN +
Sbjct: 651 QIQPLKVCR--SAPGVSHLLFADDSLLFFKAEVIQATRIKEALDLYERCTGQLINPKECS 708
Query: 596 LSYSRNVPSLYFNELKMLLGVKAMDNYDRYLGLPTIIGKSKTQIFRFVKERDWKKLKGRK 655
L +S P + +K +L V+ D+ LGLPT G+ K + F+ +KER K+L
Sbjct: 709 LLFSALCPQERQDGIKAVLQVERTCFDDKCLGLPTPDGRMKAEQFQPIKERFEKRLTDWS 768
Query: 656 EPSLSRAGREVLIKAVAQEIPAYIMSCFILPDNLCAD 692
E LS AG+E LIK+VAQ +P Y M F +P+ C +
Sbjct: 769 ERFLSLAGKEALIKSVAQALPTYTMGVFKMPERFCEE 805
>gb|AAQ19327.1| bZIP-like protein [Oryza sativa (japonica cultivar-group)]
Length = 2367
Score = 301 bits (771), Expect = 5e-80
Identities = 172/432 (39%), Positives = 253/432 (57%), Gaps = 4/432 (0%)
Query: 264 DIFSTLFTTSNPMGIEAATSLVANRLNKGHLAILNTPFSGEKVREPLFQMHPTKASGLDG 323
+ F ++T + E T L+ ++ L F+ +++ + +FQ+ P K+ G DG
Sbjct: 1125 EYFQDVYTADPNLNPETVTRLIQEKVTDIMNEKLCEDFTEDEISQAIFQIGPLKSPGPDG 1184
Query: 324 LHTLFYQKFWHIVGDDVAHFCLSVLQGRVSPGTIIPTLLVLIPKIKKSVHATHFRPISLC 383
FYQ+ W + D+ Q + P + T +VLIPK ++ V FRPISLC
Sbjct: 1185 FPARFYQRNWGTIKADIIGAVRRFFQTGLMPEGVNDTAIVLIPKKEQPVDLRDFRPISLC 1244
Query: 384 NVPFKIIT*TLANKLKIVLPDIISGPQSAFVPGRLVTDNALVAYECFHFMKKKIYGCNGI 443
NV +K+++ L N+L+ +L D++S QSAFV GR++TDNAL+A+ECFH M+K +
Sbjct: 1245 NVVYKVVSKCLVNRLRPILDDLVSVEQSAFVQGRMITDNALLAFECFHAMQKNKKANHAA 1304
Query: 444 MALKLDMSKAYDRVEWPFLRSALEKMGFPVNWVSFIMDYVTTVLFQVMLNGNPQVPFDPG 503
A KLD+SKAYDRV+W FL A+ K+GF WV++IM VT+V + V NG F P
Sbjct: 1305 CAYKLDLSKAYDRVDWRFLEMAMNKLGFARRWVNWIMKCVTSVRYMVKFNGTLLQSFAPT 1364
Query: 504 RGLRQGDPLSPYLFLICGEVFSALIQRKIGASHLSGIKIARNVSAPVISHLLFADDNVIF 563
RGLRQGDPL P+LFL + S L++ K+ + L+ K+ R +AP ISHLLFADD ++F
Sbjct: 1365 RGLRQGDPLLPFLFLFVADGLSLLLKEKVAQNSLTPFKVCR--AAPGISHLLFADDTLLF 1422
Query: 564 ARATREEASCVKGILAEYDKVYVQVINFDK-SMLSYSRNVPSLYFNELKMLLGVKAMDNY 622
+A + EA VK +L+ Y Q+IN K S+L + P++ + +L V+
Sbjct: 1423 FKAHQREAEVVKEVLSSYAMGTGQLINPAKCSILMGGASTPAV-SEAISEILQVERDRFE 1481
Query: 623 DRYLGLPTIIGKSKTQIFRFVKERDWKKLKGRKEPSLSRAGREVLIKAVAQEIPAYIMSC 682
DRYLG PT G+ F+ ++ + WK++ E LS G+EVLIKAV Q IP Y+M
Sbjct: 1482 DRYLGFPTPEGRMHKGRFQSLQAKIWKRVIQWGENHLSTGGKEVLIKAVIQAIPVYVMGI 1541
Query: 683 FILPDNLCADST 694
F LP+++ D T
Sbjct: 1542 FKLPESVIDDLT 1553
>gb|AAV32224.1| hypothetical protein [Oryza sativa (japonica cultivar-group)]
gi|45267888|gb|AAS55787.1| hypothetical protein [Oryza
sativa (japonica cultivar-group)]
Length = 1936
Score = 296 bits (758), Expect = 2e-78
Identities = 166/431 (38%), Positives = 249/431 (57%), Gaps = 2/431 (0%)
Query: 264 DIFSTLFTTSNPMGIEAATSLVANRLNKGHLAILNTPFSGEKVREPLFQMHPTKASGLDG 323
+ F ++ + E+ T L ++ L F E++ + +FQ+ P K+ DG
Sbjct: 1031 EYFQGVYKADPSLNPESVTRLFQEKVTDAMNEKLCQEFKEEEIAQAIFQIGPLKSPRPDG 1090
Query: 324 LHTLFYQKFWHIVGDDVAHFCLSVLQGRVSPGTIIPTLLVLIPKIKKSVHATHFRPISLC 383
FYQ+ W + D+ + Q + P + T +VLIPK + + +RPISLC
Sbjct: 1091 FPARFYQRNWGTLKSDIILAVRNFFQSGLMPKGVNDTAIVLIPKKDQPIDLKDYRPISLC 1150
Query: 384 NVPFKIIT*TLANKLKIVLPDIISGPQSAFVPGRLVTDNALVAYECFHFMKKKIYGCNGI 443
NV +K+++ L N+L+ +L D++S QSAF+ GR++TDNAL+A+ECFH ++K +
Sbjct: 1151 NVVYKVVSKCLVNRLRPILDDLVSKEQSAFIQGRMITDNALLAFECFHSIQKNKKANSAA 1210
Query: 444 MALKLDMSKAYDRVEWPFLRSALEKMGFPVNWVSFIMDYVTTVLFQVMLNGNPQVPFDPG 503
A KLD+SKAYDRV+W FL AL K+GF WVS+IM VTTV + V NG F P
Sbjct: 1211 CAYKLDLSKAYDRVDWRFLELALNKLGFAHRWVSWIMLCVTTVRYSVKFNGTLLRSFAPT 1270
Query: 504 RGLRQGDPLSPYLFLICGEVFSALIQRKIGASHLSGIKIARNVSAPVISHLLFADDNVIF 563
RGLRQG+PLSP+LFL + S L++ K+ + L+ +KI R AP IS+LLFADD ++F
Sbjct: 1271 RGLRQGEPLSPFLFLFVADGLSLLLKEKVAQNSLTPLKICR--QAPGISYLLFADDTLLF 1328
Query: 564 ARATREEASCVKGILAEYDKVYVQVINFDKSMLSYSRNVPSLYFNELKMLLGVKAMDNYD 623
+A ++EA VK +L Y + Q+IN K + + PS +++ L V+ + D
Sbjct: 1329 FKAEKKEAEVVKEVLTNYAQGTGQLINPAKCSILFGEASPSSVSEDIRNTLQVERDNFED 1388
Query: 624 RYLGLPTIIGKSKTQIFRFVKERDWKKLKGRKEPSLSRAGREVLIKAVAQEIPAYIMSCF 683
RYLG PT G+ F+ ++ + K++ E LS G+E+LIKAV Q IP Y+M F
Sbjct: 1389 RYLGFPTPEGRMHKGRFQSLQAKIAKRVIQWGENFLSSGGKEILIKAVIQAIPVYVMGLF 1448
Query: 684 ILPDNLCADST 694
PD++ + T
Sbjct: 1449 KFPDSVYDELT 1459
>gb|AAD29058.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
thaliana] gi|25411151|pir||H84465 hypothetical protein
At2g05200 [imported] - Arabidopsis thaliana
Length = 1229
Score = 294 bits (753), Expect = 6e-78
Identities = 153/425 (36%), Positives = 243/425 (57%), Gaps = 2/425 (0%)
Query: 266 FSTLFTTSNPMGIEAATSLVANRLNKGHLAILNTPFSGEKVREPLFQMHPTKASGLDGLH 325
F +FT+ + + +++G L + E+V++ +F ++ +KA G DG
Sbjct: 288 FQQIFTSESDGDFSVVDEAIEPMVSQGDNDFLTRIPNDEEVKDAVFSINASKAPGPDGFT 347
Query: 326 TLFYQKFWHIVGDDVAHFCLSVLQGRVSPGTIIPTLLVLIPKIKKSVHATHFRPISLCNV 385
FY +WHI+ DV + P + T + LIPK +RPI+LCN+
Sbjct: 348 AGFYHSYWHIISTDVGREIRLFFTSKNFPRRMNETHIRLIPKDLGPRKVADYRPIALCNI 407
Query: 386 PFKIIT*TLANKLKIVLPDIISGPQSAFVPGRLVTDNALVAYECFHFMKKKIYGCNGIMA 445
+KI+ + +++++LP +IS QSAFVPGR+++DN L+ +E HF++ + MA
Sbjct: 408 FYKIVAKIMTKRMQLILPKLISENQSAFVPGRVISDNVLITHEVLHFLRTSSAKKHCSMA 467
Query: 446 LKLDMSKAYDRVEWPFLRSALEKMGFPVNWVSFIMDYVTTVLFQVMLNGNPQVPFDPGRG 505
+K DMSKAYDRVEW FL+ L++ GF W+ ++++ VT+V + ++NG PQ P RG
Sbjct: 468 VKTDMSKAYDRVEWDFLKKVLQRFGFHSIWIDWVLECVTSVSYSFLINGTPQGKVVPTRG 527
Query: 506 LRQGDPLSPYLFLICGEVFSALIQRKIGASHLSGIKIARNVSAPVISHLLFADDNVIFAR 565
LRQGDPLSP LF++C EV S L R L G+++ +++ P ++HLLFADD + F++
Sbjct: 528 LRQGDPLSPCLFILCTEVLSGLCTRAQRLRQLPGVRV--SINGPRVNHLLFADDTMFFSK 585
Query: 566 ATREEASCVKGILAEYDKVYVQVINFDKSMLSYSRNVPSLYFNELKMLLGVKAMDNYDRY 625
+ E + + IL+ Y K Q INF KS +++S P ++K +L ++ +Y
Sbjct: 586 SDPESCNKLSEILSRYGKASGQSINFHKSSVTFSSKTPRSVKGQVKRILKIRKEGGTGKY 645
Query: 626 LGLPTIIGKSKTQIFRFVKERDWKKLKGRKEPSLSRAGREVLIKAVAQEIPAYIMSCFIL 685
LGLP G+ K IF + ++ +K LS+AG++V++KAV +P Y MSCF L
Sbjct: 646 LGLPEHFGRRKRDIFGAIIDKIRQKSHSWASRFLSQAGKQVMLKAVLASMPLYSMSCFKL 705
Query: 686 PDNLC 690
P LC
Sbjct: 706 PSALC 710
>emb|CAB75484.1| putative protein [Arabidopsis thaliana] gi|11357921|pir||T47495
hypothetical protein F9K21.130 - Arabidopsis thaliana
Length = 851
Score = 291 bits (744), Expect = 7e-77
Identities = 158/438 (36%), Positives = 244/438 (55%), Gaps = 6/438 (1%)
Query: 261 FLMDIFSTLFTTSNPMGIEAATSLVANRLNKGHLAILNTPFSGEKVREPLFQMHPTKASG 320
F DIF+T +P+ S V N +N L F ++ E + Q+ KA G
Sbjct: 13 FFTDIFTTNGIQVSPIDFADFPSSVTNIINSE----LTQDFRDSEIFEAICQIGDDKAPG 68
Query: 321 LDGLHTLFYQKFWHIVGDDVAHFCLSVLQGRVSPGTIIPTLLVLIPKIKKSVHATHFRPI 380
DGL FY++ W IVG+DV + ++ T + +IPKI+ + +RPI
Sbjct: 69 PDGLTARFYKQCWDIVGNDVIKEVKLFFESSHMKTSVNHTNICMIPKIQNPQTLSDYRPI 128
Query: 381 SLCNVPFKIIT*TLANKLKIVLPDIISGPQSAFVPGRLVTDNALVAYECFHFMKKKIYGC 440
+LCNV +K+I+ + N+LK L I+S Q+AF+PGR++ DN ++A+E H +K +
Sbjct: 129 ALCNVLYKVISKCMVNRLKAHLNSIVSDSQAAFIPGRIINDNVMIAHEIMHSLKVRKRVS 188
Query: 441 NGIMALKLDMSKAYDRVEWPFLRSALEKMGFPVNWVSFIMDYVTTVLFQVMLNGNPQVPF 500
MA+K D+SKAYDRVEW FL + + GF W+ +IM V +V + V++NG+P
Sbjct: 189 KTYMAVKTDVSKAYDRVEWDFLETTMRLFGFCDKWIGWIMAAVKSVHYSVLINGSPHGYI 248
Query: 501 DPGRGLRQGDPLSPYLFLICGEVFSALIQRKIGASHLSGIKIARNVSAPVISHLLFADDN 560
P RG+RQGDPLSPYLF++CG++ S LI+ K + + G++I AP I+HL FADD+
Sbjct: 249 SPTRGIRQGDPLSPYLFILCGDILSHLIKVKASSGDIRGVRIGN--GAPAITHLQFADDS 306
Query: 561 VIFARATREEASCVKGILAEYDKVYVQVINFDKSMLSYSRNVPSLYFNELKMLLGVKAMD 620
+ F +A +K + Y+ Q IN KS++++ V LK LL +
Sbjct: 307 LFFCQANVRNCQALKDVFDVYEYYSGQKINVQKSLITFGSRVYGSTQTRLKTLLNIPNQG 366
Query: 621 NYDRYLGLPTIIGKSKTQIFRFVKERDWKKLKGRKEPSLSRAGREVLIKAVAQEIPAYIM 680
+YLGLP G+ K ++F ++ +R ++ LS AG+E+L+K+VA +P Y M
Sbjct: 367 GGGKYLGLPEQFGRKKKEMFNYIIDRVKERTASWSAKFLSPAGKEILLKSVALAMPVYAM 426
Query: 681 SCFILPDNLCADSTGVAM 698
SCF LP + ++ + M
Sbjct: 427 SCFKLPQGIVSEIESLLM 444
>gb|AAD24831.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
thaliana] gi|25408166|pir||G84721 hypothetical protein
At2g31520 [imported] - Arabidopsis thaliana
Length = 1524
Score = 290 bits (741), Expect = 2e-76
Identities = 160/438 (36%), Positives = 243/438 (54%), Gaps = 6/438 (1%)
Query: 261 FLMDIFSTLFTTSNPMGIEAATSLVANRLNKGHLAILNTPFSGEKVREPLFQMHPTKASG 320
F +IFST +P+ S V N +N L FS ++ + + Q+ KA G
Sbjct: 548 FFTNIFSTNGIKVSPIDFADFKSTVTNTVNLD----LTKEFSDTEIYDAICQIGDDKAPG 603
Query: 321 LDGLHTLFYQKFWHIVGDDVAHFCLSVLQGRVSPGTIIPTLLVLIPKIKKSVHATHFRPI 380
DGL FY+ W IVG DV + +I T + +IPKI + +RPI
Sbjct: 604 PDGLTARFYKNCWDIVGYDVILEVKKFFETSFMKPSINHTNICMIPKITNPTTLSDYRPI 663
Query: 381 SLCNVPFKIIT*TLANKLKIVLPDIISGPQSAFVPGRLVTDNALVAYECFHFMKKKIYGC 440
+LCNV +K+I+ L N+LK L I+S Q+AF+PGR++ DN ++A+E H +K +
Sbjct: 664 ALCNVLYKVISKCLVNRLKSHLNSIVSDSQAAFIPGRIINDNVMIAHEVMHSLKVRKRVS 723
Query: 441 NGIMALKLDMSKAYDRVEWPFLRSALEKMGFPVNWVSFIMDYVTTVLFQVMLNGNPQVPF 500
MA+K D+SKAYDRVEW FL + + GF W+ +IM V +V + V++NG+P
Sbjct: 724 KTYMAVKTDVSKAYDRVEWDFLETTMRLFGFCNKWIGWIMAAVKSVHYSVLINGSPHGYI 783
Query: 501 DPGRGLRQGDPLSPYLFLICGEVFSALIQRKIGASHLSGIKIARNVSAPVISHLLFADDN 560
P RG+RQGDPLSPYLF++CG++ S LI + + L G++I AP I+HL FADD+
Sbjct: 784 TPTRGIRQGDPLSPYLFILCGDILSHLINGRASSGDLRGVRIGN--GAPAITHLQFADDS 841
Query: 561 VIFARATREEASCVKGILAEYDKVYVQVINFDKSMLSYSRNVPSLYFNELKMLLGVKAMD 620
+ F +A +K + Y+ Q IN KSM+++ V ++LK +L +
Sbjct: 842 LFFCQANVRNCQALKDVFDVYEYYSGQKINVQKSMITFGSRVYGSTQSKLKQILEIPNQG 901
Query: 621 NYDRYLGLPTIIGKSKTQIFRFVKERDWKKLKGRKEPSLSRAGREVLIKAVAQEIPAYIM 680
+YLGLP G+ K ++F ++ +R K+ LS AG+E+++K+VA +P Y M
Sbjct: 902 GGGKYLGLPEQFGRKKKEMFEYIIDRVKKRTSTWSARFLSPAGKEIMLKSVALAMPVYAM 961
Query: 681 SCFILPDNLCADSTGVAM 698
SCF LP + ++ + M
Sbjct: 962 SCFKLPKGIVSEIESLLM 979
>gb|AAD20714.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
thaliana] gi|25412331|pir||G84649 hypothetical protein
At2g25550 [imported] - Arabidopsis thaliana
Length = 1750
Score = 289 bits (740), Expect = 2e-76
Identities = 160/438 (36%), Positives = 242/438 (54%), Gaps = 6/438 (1%)
Query: 261 FLMDIFSTLFTTSNPMGIEAATSLVANRLNKGHLAILNTPFSGEKVREPLFQMHPTKASG 320
F +IFST +P+ S V N +N L FS ++ + + Q+ KA G
Sbjct: 774 FFTNIFSTNGIKVSPIDFADFKSTVTNTVNLD----LTKEFSDTEIYDAICQIGDDKAPG 829
Query: 321 LDGLHTLFYQKFWHIVGDDVAHFCLSVLQGRVSPGTIIPTLLVLIPKIKKSVHATHFRPI 380
DGL FY+ W IVG DV + +I T + +IPKI + +RPI
Sbjct: 830 PDGLTARFYKNCWDIVGYDVILEVKKFFETSFMKPSINHTNICMIPKITNPTTLSDYRPI 889
Query: 381 SLCNVPFKIIT*TLANKLKIVLPDIISGPQSAFVPGRLVTDNALVAYECFHFMKKKIYGC 440
+LCNV +K+I+ L N+LK L I+S Q+AF+PGR++ DN ++A+E H +K +
Sbjct: 890 ALCNVLYKVISKCLVNRLKSHLNSIVSDSQAAFIPGRIINDNVMIAHEVMHSLKVRKRVS 949
Query: 441 NGIMALKLDMSKAYDRVEWPFLRSALEKMGFPVNWVSFIMDYVTTVLFQVMLNGNPQVPF 500
MA+K D+SKAYDRVEW FL + + GF W+ +IM V +V + V++NG+P
Sbjct: 950 KTYMAVKTDVSKAYDRVEWDFLETTMRLFGFCNKWIGWIMAAVKSVHYSVLINGSPHGYI 1009
Query: 501 DPGRGLRQGDPLSPYLFLICGEVFSALIQRKIGASHLSGIKIARNVSAPVISHLLFADDN 560
P RG+RQGDPLSPYLF++CG++ S LI + + L G++I AP I+HL FADD+
Sbjct: 1010 TPTRGIRQGDPLSPYLFILCGDILSHLINGRASSGDLRGVRIGN--GAPAITHLQFADDS 1067
Query: 561 VIFARATREEASCVKGILAEYDKVYVQVINFDKSMLSYSRNVPSLYFNELKMLLGVKAMD 620
+ F +A +K + Y+ Q IN KSM+++ V + LK +L +
Sbjct: 1068 LFFCQANVRNCQALKDVFDVYEYYSGQKINVQKSMITFGSRVYGSTQSRLKQILEIPNQG 1127
Query: 621 NYDRYLGLPTIIGKSKTQIFRFVKERDWKKLKGRKEPSLSRAGREVLIKAVAQEIPAYIM 680
+YLGLP G+ K ++F ++ +R K+ LS AG+E+++K+VA +P Y M
Sbjct: 1128 GGGKYLGLPEQFGRKKKEMFEYIIDRVKKRTSTWSARFLSPAGKEIMLKSVALAMPVYAM 1187
Query: 681 SCFILPDNLCADSTGVAM 698
SCF LP + ++ + M
Sbjct: 1188 SCFKLPKGIVSEIESLLM 1205
>gb|AAD03565.2| putative non-LTR retroelement reverse transcriptase [Arabidopsis
thaliana] gi|25411819|pir||H84557 hypothetical protein
At2g17910 [imported] - Arabidopsis thaliana
Length = 1344
Score = 288 bits (738), Expect = 4e-76
Identities = 163/439 (37%), Positives = 251/439 (57%), Gaps = 8/439 (1%)
Query: 261 FLMDIFSTLFTTSNPMGIEAATSLVANRLNKGHLAILNTPFSGEKVREPLFQMHPTKASG 320
F ++F++ + ++ +E + V + +N L + +V +F ++ A G
Sbjct: 370 FFENLFTSTYILTHNNHLEGLQAKVTSEMNHN----LIQEVTELEVYNAVFSINKESAPG 425
Query: 321 LDGLHTLFYQKFWHIVGDDVAHFCLSVLQGRVSPGTIIPTLLVLIPKIKKSVHATHFRPI 380
DG LF+Q+ W +V + + V P T + LIPKI + RPI
Sbjct: 426 PDGFTALFFQQHWDLVKHQILTEIFGFFETGVLPQDWNHTHICLIPKITSPQRMSDLRPI 485
Query: 381 SLCNVPFKIIT*TLANKLKIVLPDIISGPQSAFVPGRLVTDNALVAYECFHFMKKKIYGC 440
SLC+V +KII+ L +LK LP I+S QSAFVP RL++DN LVA+E H ++
Sbjct: 486 SLCSVLYKIISKILTQRLKKHLPAIVSTTQSAFVPQRLISDNILVAHEMIHSLRTNDRIS 545
Query: 441 NGIMALKLDMSKAYDRVEWPFLRSALEKMGFPVNWVSFIMDYVTTVLFQVMLNGNPQVPF 500
MA K DMSKAYDRVEWPFL + + +GF W+S+IM+ VT+V + V++NG P
Sbjct: 546 KEHMAFKTDMSKAYDRVEWPFLETMMTALGFNNKWISWIMNCVTSVSYSVLINGQPYGHI 605
Query: 501 DPGRGLRQGDPLSPYLFLICGEVFSALIQRKIGASHLSGIKIA-RNVSAPVISHLLFADD 559
P RG+RQGDPLSP LF++C E ++ + A ++GI+ + VS ++HLLFADD
Sbjct: 606 IPTRGIRQGDPLSPALFVLCTEALIHILNKAEQAGKITGIQFQDKKVS---VNHLLFADD 662
Query: 560 NVIFARATREEASCVKGILAEYDKVYVQVINFDKSMLSYSRNVPSLYFNELKMLLGVKAM 619
++ +AT++E + L++Y ++ Q+IN +KS +++ +NV + +K G+
Sbjct: 663 TLLMCKATKQECEELMQCLSQYGQLSGQMINLNKSAITFGKNVDIQIKDWIKSRSGISLE 722
Query: 620 DNYDRYLGLPTIIGKSKTQIFRFVKERDWKKLKGRKEPSLSRAGREVLIKAVAQEIPAYI 679
+YLGLP + SK +F F+KE+ +L G +LS+ G+EVL+K++A +P Y+
Sbjct: 723 GGTGKYLGLPECLSGSKRDLFGFIKEKLQSRLTGWYAKTLSQGGKEVLLKSIALALPVYV 782
Query: 680 MSCFILPDNLCADSTGVAM 698
MSCF LP NLC T V M
Sbjct: 783 MSCFKLPKNLCQKLTTVMM 801
>pir||T00833 RNA-directed DNA polymerase homolog T13L16.7 - Arabidopsis thaliana
(fragment)
Length = 1365
Score = 288 bits (738), Expect = 4e-76
Identities = 163/439 (37%), Positives = 251/439 (57%), Gaps = 8/439 (1%)
Query: 261 FLMDIFSTLFTTSNPMGIEAATSLVANRLNKGHLAILNTPFSGEKVREPLFQMHPTKASG 320
F ++F++ + ++ +E + V + +N L + +V +F ++ A G
Sbjct: 391 FFENLFTSTYILTHNNHLEGLQAKVTSEMNHN----LIQEVTELEVYNAVFSINKESAPG 446
Query: 321 LDGLHTLFYQKFWHIVGDDVAHFCLSVLQGRVSPGTIIPTLLVLIPKIKKSVHATHFRPI 380
DG LF+Q+ W +V + + V P T + LIPKI + RPI
Sbjct: 447 PDGFTALFFQQHWDLVKHQILTEIFGFFETGVLPQDWNHTHICLIPKITSPQRMSDLRPI 506
Query: 381 SLCNVPFKIIT*TLANKLKIVLPDIISGPQSAFVPGRLVTDNALVAYECFHFMKKKIYGC 440
SLC+V +KII+ L +LK LP I+S QSAFVP RL++DN LVA+E H ++
Sbjct: 507 SLCSVLYKIISKILTQRLKKHLPAIVSTTQSAFVPQRLISDNILVAHEMIHSLRTNDRIS 566
Query: 441 NGIMALKLDMSKAYDRVEWPFLRSALEKMGFPVNWVSFIMDYVTTVLFQVMLNGNPQVPF 500
MA K DMSKAYDRVEWPFL + + +GF W+S+IM+ VT+V + V++NG P
Sbjct: 567 KEHMAFKTDMSKAYDRVEWPFLETMMTALGFNNKWISWIMNCVTSVSYSVLINGQPYGHI 626
Query: 501 DPGRGLRQGDPLSPYLFLICGEVFSALIQRKIGASHLSGIKIA-RNVSAPVISHLLFADD 559
P RG+RQGDPLSP LF++C E ++ + A ++GI+ + VS ++HLLFADD
Sbjct: 627 IPTRGIRQGDPLSPALFVLCTEALIHILNKAEQAGKITGIQFQDKKVS---VNHLLFADD 683
Query: 560 NVIFARATREEASCVKGILAEYDKVYVQVINFDKSMLSYSRNVPSLYFNELKMLLGVKAM 619
++ +AT++E + L++Y ++ Q+IN +KS +++ +NV + +K G+
Sbjct: 684 TLLMCKATKQECEELMQCLSQYGQLSGQMINLNKSAITFGKNVDIQIKDWIKSRSGISLE 743
Query: 620 DNYDRYLGLPTIIGKSKTQIFRFVKERDWKKLKGRKEPSLSRAGREVLIKAVAQEIPAYI 679
+YLGLP + SK +F F+KE+ +L G +LS+ G+EVL+K++A +P Y+
Sbjct: 744 GGTGKYLGLPECLSGSKRDLFGFIKEKLQSRLTGWYAKTLSQGGKEVLLKSIALALPVYV 803
Query: 680 MSCFILPDNLCADSTGVAM 698
MSCF LP NLC T V M
Sbjct: 804 MSCFKLPKNLCQKLTTVMM 822
>pir||G86379 protein F5A9.24 [imported] - Arabidopsis thaliana
gi|9945082|gb|AAG03119.1| F5A9.24 [Arabidopsis thaliana]
Length = 1254
Score = 283 bits (724), Expect = 1e-74
Identities = 163/425 (38%), Positives = 239/425 (55%), Gaps = 2/425 (0%)
Query: 266 FSTLFTTSNPMGIEAATSLVANRLNKGHLAILNTPFSGEKVREPLFQMHPTKASGLDGLH 325
F LF +SNP G S + R+++ L S ++++E +F + P A G DG+
Sbjct: 359 FGNLFKSSNPSGFTDWFSGLVPRVSEVMNESLVGEVSAQEIKEAVFSIKPASAPGPDGMS 418
Query: 326 TLFYQKFWHIVGDDVAHFCLSVLQGRVSPGTIIPTLLVLIPKIKKSVHATHFRPISLCNV 385
LF+Q +W VG+ V + P T L LIPK + RPISLC+V
Sbjct: 419 ALFFQHYWSTVGNQVTSEVKKFFADGIMPAEWNYTHLCLIPKTQHPTEMVDLRPISLCSV 478
Query: 386 PFKIIT*TLANKLKIVLPDIISGPQSAFVPGRLVTDNALVAYECFHFMKKKIYGCNGIMA 445
+KII+ +A +L+ LP+I+S QSAFV RL+TDN LVA+E H +K + MA
Sbjct: 479 LYKIISKIMAKRLQPWLPEIVSDTQSAFVSERLITDNILVAHELVHSLKVHPRISSEFMA 538
Query: 446 LKLDMSKAYDRVEWPFLRSALEKMGFPVNWVSFIMDYVTTVLFQVMLNGNPQVPFDPGRG 505
+K DMSKAYDRVEW +LRS L +GF + WV++IM V++V + V++N P RG
Sbjct: 539 VKSDMSKAYDRVEWSYLRSLLLSLGFHLKWVNWIMVCVSSVTYSVLINDCPFGLIILQRG 598
Query: 506 LRQGDPLSPYLFLICGEVFSALIQRKIGASHLSGIKIARNVSAPVISHLLFADDNVIFAR 565
LRQGDPLSP+LF++C E + L+ + L GI+ + N P++ HLLFADD++ +
Sbjct: 599 LRQGDPLSPFLFVLCTEGLTHLLNKAQWEGALEGIQFSEN--GPMVHHLLFADDSLFLCK 656
Query: 566 ATREEASCVKGILAEYDKVYVQVINFDKSMLSYSRNVPSLYFNELKMLLGVKAMDNYDRY 625
A+RE++ ++ IL Y Q IN +KS +++ V ++ LG+ Y
Sbjct: 657 ASREQSLVLQKILKVYGNATGQTINLNKSSITFGEKVDEQLKGTIRTCLGIFTEGGAGTY 716
Query: 626 LGLPTIIGKSKTQIFRFVKERDWKKLKGRKEPSLSRAGREVLIKAVAQEIPAYIMSCFIL 685
LGLP SK + ++K+R +KL LS+ G+EVL+K+VA +P + MSCF L
Sbjct: 717 LGLPECFSGSKVDMLHYLKDRLKEKLDVWFTRCLSQGGKEVLLKSVALAMPVFAMSCFKL 776
Query: 686 PDNLC 690
P C
Sbjct: 777 PITTC 781
Database: nr
Posted date: Jul 5, 2005 12:34 AM
Number of letters in database: 863,360,394
Number of sequences in database: 2,540,612
Lambda K H
0.334 0.146 0.460
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,215,006,521
Number of Sequences: 2540612
Number of extensions: 48971054
Number of successful extensions: 139468
Number of sequences better than 10.0: 1031
Number of HSP's better than 10.0 without gapping: 659
Number of HSP's successfully gapped in prelim test: 373
Number of HSP's that attempted gapping in prelim test: 137341
Number of HSP's gapped (non-prelim): 1281
length of query: 758
length of database: 863,360,394
effective HSP length: 136
effective length of query: 622
effective length of database: 517,837,162
effective search space: 322094714764
effective search space used: 322094714764
T: 11
A: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 39 (21.6 bits)
S2: 79 (35.0 bits)
Lotus: description of TM0207.9