BLAST2 result
BLASTP 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TM0207.8
(258 letters)
Database: nr
2,540,612 sequences; 863,360,394 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAF55584.1| CG7709-PA [Drosophila melanogaster] gi|24648035|r... 53 1e-05
sp|P35074|RPB1_CAEBR DNA-directed RNA polymerase II largest subu... 52 1e-05
emb|CAB77963.1| extensin-like protein [Arabidopsis thaliana] gi|... 51 3e-05
gb|AAO23595.1| At1g10390/F14N23_29 [Arabidopsis thaliana] gi|193... 48 2e-04
pir||S14181 DNA-directed RNA polymerase (EC 2.7.7.6) largest cha... 48 2e-04
emb|CAA36734.1| DNA-directed RNA polymerase [Glycine max] 47 4e-04
gb|AAA96158.2| Amanitin resistant protein 1 [Caenorhabditis eleg... 47 4e-04
ref|NP_500523.2| DNA-directed RNA polymerase II largest subunit,... 47 4e-04
pir||S14182 DNA-directed RNA polymerase (EC 2.7.7.6) largest cha... 47 4e-04
pir||T29959 DNA-directed RNA polymerase II large subunit ama-1 -... 47 4e-04
gb|AAA28126.1| RNA polymerase II 47 4e-04
emb|CAA36733.1| DNA-directed RNA polymerase [Glycine max] gi|743... 46 9e-04
ref|XP_317690.2| ENSANGP00000010305 [Anopheles gambiae str. PEST... 45 0.002
emb|CAA37130.1| RNA polymerase II [Arabidopsis thaliana] 44 0.003
gb|AAN05431.1| phospholipase D beta 1 isoform 1b [Gossypium hirs... 44 0.003
ref|XP_493925.1| similar to Arabidopsis thaliana DNA-directed RN... 44 0.006
emb|CAA32090.1| unnamed protein product [Nicotiana tabacum] gi|8... 43 0.008
gb|AAP68277.1| At5g04170 [Arabidopsis thaliana] gi|9955572|emb|C... 43 0.010
emb|CAA36735.1| DNA-directed RNA polymerase [Arabidopsis thaliana] 42 0.013
emb|CAI51953.1| polymerase (RNA) II (DNA directed) polypeptide A... 42 0.013
>gb|AAF55584.1| CG7709-PA [Drosophila melanogaster] gi|24648035|ref|NP_650744.1|
CG7709-PA [Drosophila melanogaster]
Length = 950
Score = 52.8 bits (125), Expect = 1e-05
Identities = 61/217 (28%), Positives = 84/217 (38%), Gaps = 30/217 (13%)
Query: 14 SPPQPHSTLSPYAAAFSVNRPPFNDVSAPFVDSDEPAYGVPPNPVHYPVHPRSYGYDFFP 73
+P + + +P ++++ PP + AP S P+YG P P +SYG P
Sbjct: 358 APSKSYGAPAPPSSSYGAPAPPSSSYGAPAPPS--PSYGAPAPP------SKSYGAPAPP 409
Query: 74 ESDSVSKPYGYSGLASEDSFWYDQWPPTSSKPSLAEPQPCFPDLNSMGLASEDSFGYEQW 133
S Y A+ + PP+SS + A P +S G S S Y
Sbjct: 410 SS-------SYGAPAAPSKSYGAPAPPSSSYGAPAPPS------SSYGAPSAPSSSYGPP 456
Query: 134 LSASSKPSLG-EAQPYFP--SYIP--STIPSPTSSVAAPIHWSSSSGFAPLDVVPSFGDY 188
A + PS A P P SY+P S P+SS AP S S F PL PS
Sbjct: 457 KPAPAPPSSSYGAPPQAPVSSYLPPASRPSKPSSSYGAP----SVSSFVPLPSAPSTNYG 512
Query: 189 AAENSSEFGFSGLGAGSWNQFSGFDHGKGKQVGAESS 225
A + G SG +G + + GA SS
Sbjct: 513 APSKTQSLGSSGYSSGPSSSYEAPVAPPSSSYGAPSS 549
Score = 45.8 bits (107), Expect = 0.001
Identities = 57/226 (25%), Positives = 85/226 (37%), Gaps = 21/226 (9%)
Query: 14 SPPQPHSTLSPYAAAFSVNRPPFNDVSAPFVDSDEPAYGVPPNPV------HYPVHPRSY 67
+P + + +P ++++ PP + AP S +YG PP P Y P++
Sbjct: 418 APSKSYGAPAPPSSSYGAPAPPSSSYGAPSAPSS--SYG-PPKPAPAPPSSSYGAPPQAP 474
Query: 68 GYDFFPESDSVSKPYGYSGLASEDSFWYDQWPPTSSKPSLAEPQPC-FPDLNSMGLASED 126
+ P + SKP G S SF P S PS P L S G +S
Sbjct: 475 VSSYLPPASRPSKPSSSYGAPSVSSF-----VPLPSAPSTNYGAPSKTQSLGSSGYSSGP 529
Query: 127 SFGYEQWLSASSKPSLGEAQPYFPSYIPSTIPSPTSSVAAPIHWSSSSGFAPLDVVPSFG 186
S YE ++ S + + P I P+SS AP S SS + S
Sbjct: 530 SSSYEAPVAPPSSSYGAPSSSFQP------ISPPSSSYGAPSSGSGSSSGSFSAAPSSLY 583
Query: 187 DYAAENSSEFGFSGLGAGSWNQFSGFDHGKGKQVGAESSLSSKQTS 232
++ SS F + S++ S + G A SS S +S
Sbjct: 584 SAPSKGSSGGSFQSAPSSSYSAPSASANSGGSYPSAPSSSYSAPSS 629
Score = 42.4 bits (98), Expect = 0.013
Identities = 60/198 (30%), Positives = 72/198 (36%), Gaps = 24/198 (12%)
Query: 12 YYSPPQPHSTLSPYAAAF----SVNRPPFNDVSA---PFVDSDEPAYGVPPNPVHYPVHP 64
Y +P Q S+ PY AA S PP + S+ P +YG PP P H
Sbjct: 164 YAAPSQSASSGGPYPAAAPRPSSSYGPPASRPSSSYGPPPSRPSQSYGPPPQ-AKKPHHR 222
Query: 65 RSYGYDFFPESDSVSKPYGYSGLASEDSFWYDQWPPTSSKPSLAEPQPCFPDLNSMGLAS 124
R P S+ YG AS PP S+ PS + P P S
Sbjct: 223 RPSSSYGAPRPAPPSQSYGAPPSASYG-------PPKSAPPSQSYGAPAPPSSKYGPPKS 275
Query: 125 EDSFGYEQWLSASSKPSLGEAQPYFPSYIPSTIPS--------PTSSVAAPIHWSSSSGF 176
S Y A+ S G P SY PS P+SS AP SSS G
Sbjct: 276 APSSSYGAPRPAAPSSSYGAPAPPSSSYGAPAAPSSSYGAPAAPSSSYGAPAAPSSSYG- 334
Query: 177 APLDVVPSFGDYAAENSS 194
AP S+G A +SS
Sbjct: 335 APAPPSKSYGAPAPPSSS 352
Score = 38.9 bits (89), Expect = 0.14
Identities = 63/248 (25%), Positives = 87/248 (34%), Gaps = 16/248 (6%)
Query: 12 YYSPPQPHSTLSPYAAA--FSVNRPPFNDVSA-PFVDSDEPAYGVPPNPVH----YPVHP 64
Y +P S+ PYA+A S + P S P+ + +Y P + YP P
Sbjct: 624 YSAPSSSSSSGGPYASAPSSSYSAPSSGSNSGGPYPAAPSSSYSAPSASANSGGSYPSAP 683
Query: 65 RSYGYDFFPESDSVSK-PYGYSGLASEDSFWYDQWPPTSSKPSLAEPQPCFPDLNSMGLA 123
S P S+S P S S S + P +S PS + P + A
Sbjct: 684 SSSYSAPSPGSNSGGPYPAAPSSSYSAPSPSANSGGPYASAPSSSYSAPSSSSNSGGPYA 743
Query: 124 SEDSFGYEQWLSASSKPSLGEAQPYFPSYIPSTIPS--------PTSSVAAPIHWSSSSG 175
+ S Y S+SS + P PS+ S P+SS AAP S+S G
Sbjct: 744 AAPSSSYSAPSSSSSSGGPYPSAPSSSYSAPSSSLSSGGPYPSAPSSSYAAPSPSSNSGG 803
Query: 176 FAPLDVVPSFGDYAAENSSEFGFSGLGAGSWNQFSGFDHGKGKQVGAESSLSSKQTSLVA 235
P S+ A SS +G G +G SS SS +S
Sbjct: 804 PYPAAPSNSYSAPIAPPSSSYGAPASGPSPSFSAPSSSYGAPSTGSGSSSFSSSSSSFSG 863
Query: 236 AEERMNQG 243
A + G
Sbjct: 864 ASSSSSAG 871
Score = 34.7 bits (78), Expect = 2.7
Identities = 61/233 (26%), Positives = 81/233 (34%), Gaps = 40/233 (17%)
Query: 13 YSPPQPHSTLS-PYAAA----FSVNRPPFNDVSAPFVDSDEPAYGVPPNPVH----YPVH 63
YS P P S PY AA +S P N P+ + +Y P + + Y
Sbjct: 687 YSAPSPGSNSGGPYPAAPSSSYSAPSPSANS-GGPYASAPSSSYSAPSSSSNSGGPYAAA 745
Query: 64 PRSYGYDFFPESDSVSKPYGYSGLASEDSFWYDQWPPTSSKPSLAEPQPCFPDLNSMGLA 123
P S Y S S PY + +S + SS S P P P
Sbjct: 746 PSS-SYSAPSSSSSSGGPYPSAPSSS--------YSAPSSSLSSGGPYPSAPS------- 789
Query: 124 SEDSFGYEQWLSASSKPSLGEAQPYFPSYIPST-IPSPTSSVAAPIHWSSSSGFAPLDV- 181
+ + S + G P PS S I P+SS AP S S AP
Sbjct: 790 -------SSYAAPSPSSNSGGPYPAAPSNSYSAPIAPPSSSYGAPASGPSPSFSAPSSSY 842
Query: 182 -VPSFGDYAAE-NSSEFGFSGLGAGSWNQFSGFDHGKGKQVGAESSLSSKQTS 232
PS G ++ +SS FSG + S +G+ GA S+ S S
Sbjct: 843 GAPSTGSGSSSFSSSSSSFSGASSSS---SAGYPSAPSSSYGAPSTGSGHSFS 892
>sp|P35074|RPB1_CAEBR DNA-directed RNA polymerase II largest subunit
gi|39580358|emb|CAE61463.1| Hypothetical protein CBG05355
[Caenorhabditis briggsae]
Length = 1853
Score = 52.4 bits (124), Expect = 1e-05
Identities = 51/189 (26%), Positives = 76/189 (39%), Gaps = 14/189 (7%)
Query: 3 GAGSYND--WGYYSPPQPHSTLSPYAAAFSVNRPPFNDVSAPFVDSDEPAYGVPPNPVHY 60
GA +N+ W SP P LSP A+ P ++P P Y P +P +
Sbjct: 1542 GASPFNEGGWSPASPGDPLGALSPRTPAYGGMSPGVYSPASPGFSMTSPHYS-PTSPSYS 1600
Query: 61 PVHPRSYGYDFFPESDSVSKPYGYSGLASEDSFWYDQWPPTSSKPSLAEPQPCFPDLNSM 120
P P +G S S + P YS + S + PTS PS + P + +
Sbjct: 1601 PTSPAHHGQSPVSPSYSPTSP-SYSPTSPSYSPTSPSYSPTS--PSYSPTSPSYSPTSPS 1657
Query: 121 GLASEDSFGYEQWLSASSKPSLGEAQPYFPSYIPSTIPSPTSSVAAPIHWSSSSGFAPLD 180
+ S+ S S PS P P+Y P+ SPT S +P + +S ++P
Sbjct: 1658 YSPTSPSYSP---TSPSYSPSSPRYSPTSPTYSPT---SPTYSPTSPTYSPTSPTYSPTS 1711
Query: 181 VVPSFGDYA 189
PS+ Y+
Sbjct: 1712 --PSYEGYS 1718
Score = 43.1 bits (100), Expect = 0.008
Identities = 53/192 (27%), Positives = 70/192 (35%), Gaps = 31/192 (16%)
Query: 13 YSPPQPHSTLSPYAAAFSVNRPPFNDVSAPFVDSDEPAYGVPPNPVHYPVHPRSYGYDFF 72
YSP P + SP + +S P ++ S P P Y P +P + P P GY
Sbjct: 1665 YSPTSP--SYSPSSPRYSPTSPTYSPTS-PTYSPTSPTYS-PTSPTYSPTSPSYEGYSPS 1720
Query: 73 PESDSVSKPYGYSGLASEDSFWYDQWPPTSSKPSLAEPQ--PCFPDLNSMGLASEDSFGY 130
S S P YS + S Q+ PTS + S + P P P N + S Y
Sbjct: 1721 SPKYSPSSPT-YSPTSPSYSPTSPQYSPTSPQYSPSSPTYTPSSPTYNPTSPRAFSSPQY 1779
Query: 131 EQW------LSASSKPSLGEAQPYFPSYIPSTIP------------------SPTSSVAA 166
S S PS + P P+Y PS SPT S A+
Sbjct: 1780 SPTSPTYSPTSPSYTPSSPQYSPTSPTYTPSPADQPGTSNQYSPSSPTYSPSSPTYSPAS 1839
Query: 167 PIHWSSSSGFAP 178
P + SS + P
Sbjct: 1840 PSYSPSSPTYDP 1851
>emb|CAB77963.1| extensin-like protein [Arabidopsis thaliana]
gi|5731759|emb|CAB52560.1| extensin-like protein
[Arabidopsis thaliana] gi|15236481|ref|NP_192578.1|
proline-rich extensin-like family protein [Arabidopsis
thaliana] gi|7484959|pir||T14192 extensin homolog
T28D5.70 - Arabidopsis thaliana
Length = 437
Score = 51.2 bits (121), Expect = 3e-05
Identities = 51/175 (29%), Positives = 66/175 (37%), Gaps = 18/175 (10%)
Query: 12 YYSPPQPHSTLSPYAAAFSVNRPPFNDVSAPFVDSDEPAYGVPPNPVHYPVHPRSYGYDF 71
Y SPP +S+ PYA +S P+ S P+V S P Y P P Y P Y Y
Sbjct: 168 YKSPPYVYSSPPPYA--YSPPPSPYVYKSPPYVYSSPPPYAYSPPPYAYSPPPSPYVYKS 225
Query: 72 FPESDSVSKPYGYSGLAS-----EDSFWYDQWPPTSSKPSLAEPQPCFPDLNSMGLASED 126
P S PY YS S + Y PP + P P P +S
Sbjct: 226 PPYVYSSPPPYAYSPPPSPYVYKSPPYVYSSPPPYAYSP---PPSPYVYKSPPYVYSSPP 282
Query: 127 SFGYEQWLSASSKPSLGEAQPYF----PSYIPSTIPSPTSSVAAPIHWSSSSGFA 177
+ Y S P + ++ PY P Y S PSP + P +SS +A
Sbjct: 283 PYAY----SPPPSPYVYKSPPYVYSSPPPYAYSPPPSPYVYKSPPYVYSSPPPYA 333
Score = 46.2 bits (108), Expect = 9e-04
Identities = 53/185 (28%), Positives = 70/185 (37%), Gaps = 23/185 (12%)
Query: 12 YYSPPQPHSTLSPYA-----AAFSVNRPPFNDVSAP-FVDSDEPAYGVPPNPVHYPVHPR 65
Y SPP +S+ PYA + + PP+ S P +V S P Y P P Y P
Sbjct: 105 YKSPPYVYSSPPPYAYSPPPSPYVYKSPPYVYSSPPPYVYSSPPPYAYSPPPYAYSPPPS 164
Query: 66 SYGYDFFPESDSVSKPYGYSGLAS-----EDSFWYDQWPPTS-SKPSLAEPQPCFPDLNS 119
Y Y P S PY YS S + Y PP + S P A P P +
Sbjct: 165 PYVYKSPPYVYSSPPPYAYSPPPSPYVYKSPPYVYSSPPPYAYSPPPYAYSPPPSPYVYK 224
Query: 120 MG---LASEDSFGYEQWLSASSKPSLGEAQPYF----PSYIPSTIPSPTSSVAAPIHWSS 172
+S + Y S P + ++ PY P Y S PSP + P +SS
Sbjct: 225 SPPYVYSSPPPYAY----SPPPSPYVYKSPPYVYSSPPPYAYSPPPSPYVYKSPPYVYSS 280
Query: 173 SSGFA 177
+A
Sbjct: 281 PPPYA 285
Score = 43.9 bits (102), Expect = 0.004
Identities = 52/182 (28%), Positives = 68/182 (36%), Gaps = 32/182 (17%)
Query: 12 YYSPPQPHSTLSPYAA-----AFSVNRPPFNDVSAPFVDSDEP--AYGVPPNPVHYPVHP 64
Y SPP +S+ PYA A+S P+ S P+V S P AY PP+P Y P
Sbjct: 192 YKSPPYVYSSPPPYAYSPPPYAYSPPPSPYVYKSPPYVYSSPPPYAYSPPPSPYVYKSPP 251
Query: 65 RSYGYDFFPESDSVSKPYGYSGLAS-----EDSFWYDQWPPTSSKPSLAEPQPCFPDLNS 119
Y S PY YS S + Y PP + P P P
Sbjct: 252 YVY---------SSPPPYAYSPPPSPYVYKSPPYVYSSPPPYAYSP---PPSPYVYKSPP 299
Query: 120 MGLASEDSFGYEQWLSASSKPSLGEAQPYF----PSYIPSTIPSPTSSVAAPIHWSSSSG 175
+S + Y S P + ++ PY P Y S PSP + P +SS
Sbjct: 300 YVYSSPPPYAY----SPPPSPYVYKSPPYVYSSPPPYAYSPPPSPYVYKSPPYVYSSPPP 355
Query: 176 FA 177
+A
Sbjct: 356 YA 357
Score = 42.7 bits (99), Expect = 0.010
Identities = 33/107 (30%), Positives = 44/107 (40%), Gaps = 8/107 (7%)
Query: 12 YYSPPQPHSTLSPYAAAFSVNRPPFNDVSAPFVDSDEP--AYGVPPNPVHYPVHPRSYG- 68
Y SPP +S+ PYA +S P+ S P+V S P AY PP+P Y P Y
Sbjct: 319 YKSPPYVYSSPPPYA--YSPPPSPYVYKSPPYVYSSPPPYAYSPPPSPYVYKSPPYVYSS 376
Query: 69 ---YDFFPESDSVSKPYGYSGLASEDSFWYDQWPPTSSKPSLAEPQP 112
Y + P + S P + + Y PP P + P P
Sbjct: 377 PPPYTYSPPPYAYSPPPPCPDVYKPPPYVYSSPPPYVYNPPPSSPPP 423
Score = 39.3 bits (90), Expect = 0.11
Identities = 50/181 (27%), Positives = 67/181 (36%), Gaps = 34/181 (18%)
Query: 10 WGYYSPPQPHSTLSP---YAA----AFSVNRPPFNDVSAPFVDSDEP--AYGVPPNPVHY 60
+ Y PP P+ SP Y++ A+S P+ S P+V S P AY PP+P Y
Sbjct: 212 YAYSPPPSPYVYKSPPYVYSSPPPYAYSPPPSPYVYKSPPYVYSSPPPYAYSPPPSPYVY 271
Query: 61 PVHPRSYGYDFFPESDSVSKPYGYSGLAS-----EDSFWYDQWPPTSSKPSLAEPQPCFP 115
P Y S PY YS S + Y PP + P P P
Sbjct: 272 KSPPYVY---------SSPPPYAYSPPPSPYVYKSPPYVYSSPPPYAYSP---PPSPYVY 319
Query: 116 DLNSMGLASEDSFGYEQWLSASSKPSLGEAQPYF----PSYIPSTIPSPTSSVAAPIHWS 171
+S + Y S P + ++ PY P Y S PSP + P +S
Sbjct: 320 KSPPYVYSSPPPYAY----SPPPSPYVYKSPPYVYSSPPPYAYSPPPSPYVYKSPPYVYS 375
Query: 172 S 172
S
Sbjct: 376 S 376
Score = 38.9 bits (89), Expect = 0.14
Identities = 52/195 (26%), Positives = 70/195 (35%), Gaps = 30/195 (15%)
Query: 10 WGYYSPPQPHSTLSP---YAA----AFSVNRPPFNDVSAPFVDSDEP--AYGVPPNPVHY 60
+ Y PP P+ SP Y++ A+S P+ S P+V S P AY PP+P Y
Sbjct: 70 YAYSPPPSPYVYKSPPYVYSSPPPYAYSPPPSPYVYKSPPYVYSSPPPYAYSPPPSPYVY 129
Query: 61 PVHPRSYG------YDFFPESDSVSKPYGYSGLAS-----EDSFWYDQWPPTSSKPSLAE 109
P Y Y P PY YS S + Y PP + P
Sbjct: 130 KSPPYVYSSPPPYVYSSPPPYAYSPPPYAYSPPPSPYVYKSPPYVYSSPPPYAYSP---P 186
Query: 110 PQPCFPDLNSMGLASEDSFGYE---QWLSASSKPSLGEAQPYF----PSYIPSTIPSPTS 162
P P +S + Y S P + ++ PY P Y S PSP
Sbjct: 187 PSPYVYKSPPYVYSSPPPYAYSPPPYAYSPPPSPYVYKSPPYVYSSPPPYAYSPPPSPYV 246
Query: 163 SVAAPIHWSSSSGFA 177
+ P +SS +A
Sbjct: 247 YKSPPYVYSSPPPYA 261
Score = 38.5 bits (88), Expect = 0.19
Identities = 47/175 (26%), Positives = 66/175 (36%), Gaps = 32/175 (18%)
Query: 13 YSPPQP----HSTLSPYAAAFSVNRPPFNDVSAPFVDSDEP--AYGVPPNPVHYPVHPRS 66
YSPP P +S+ PY +S P+ S P+V S P AY PP+P Y P
Sbjct: 30 YSPPSPPPYVYSSPPPYT--YSPPPSPYVYKSPPYVYSSPPPYAYSPPPSPYVYKSPPYV 87
Query: 67 YGYDFFPESDSVSKPYGYSGLASEDSFWYDQWPPTSSKPSLAEPQPCFPDLNSMGLASED 126
Y S PY YS S + + +S P P P S
Sbjct: 88 Y---------SSPPPYAYSPPPSPYVYKSPPYVYSSPPPYAYSPPP-----------SPY 127
Query: 127 SFGYEQWLSASSKPSLGEAQPYF----PSYIPSTIPSPTSSVAAPIHWSSSSGFA 177
+ ++ +S P + + P + P Y S PSP + P +SS +A
Sbjct: 128 VYKSPPYVYSSPPPYVYSSPPPYAYSPPPYAYSPPPSPYVYKSPPYVYSSPPPYA 182
Score = 38.1 bits (87), Expect = 0.24
Identities = 55/197 (27%), Positives = 74/197 (36%), Gaps = 38/197 (19%)
Query: 12 YYSPPQPHSTLSP---YAA----AFSVNRPPFNDVSAPFVDSDEP--AYGVPPNPVHYPV 62
Y PP P+ SP Y++ A+S P+ S P+V S P AY PP+P Y
Sbjct: 48 YSPPPSPYVYKSPPYVYSSPPPYAYSPPPSPYVYKSPPYVYSSPPPYAYSPPPSPYVYKS 107
Query: 63 HPRSYG----YDFFPESDSV---SKPYGYSGLASEDSFWYDQWPPTS-SKPSLAEPQPCF 114
P Y Y + P S PY YS S + Y PP + S P A P
Sbjct: 108 PPYVYSSPPPYAYSPPPSPYVYKSPPYVYS---SPPPYVYSSPPPYAYSPPPYAYSPPPS 164
Query: 115 PDLNSMG---LASEDSFGYEQWLSASSKPSLGEAQPYF-----------PSYIPSTIPSP 160
P + +S + Y S P + ++ PY P Y S PSP
Sbjct: 165 PYVYKSPPYVYSSPPPYAY----SPPPSPYVYKSPPYVYSSPPPYAYSPPPYAYSPPPSP 220
Query: 161 TSSVAAPIHWSSSSGFA 177
+ P +SS +A
Sbjct: 221 YVYKSPPYVYSSPPPYA 237
Score = 36.2 bits (82), Expect = 0.92
Identities = 46/172 (26%), Positives = 62/172 (35%), Gaps = 30/172 (17%)
Query: 10 WGYYSPPQPHSTLSP---YAA----AFSVNRPPFNDVSAPFVDSDEP--AYGVPPNPVHY 60
+ Y PP P+ SP Y++ A+S P+ S P+V S P AY PP+P Y
Sbjct: 236 YAYSPPPSPYVYKSPPYVYSSPPPYAYSPPPSPYVYKSPPYVYSSPPPYAYSPPPSPYVY 295
Query: 61 PVHPRSYGYDFFPESDSVSKPYGYSGLAS-----EDSFWYDQWPPTSSKPSLAEPQPCFP 115
P Y S PY YS S + Y PP + P P P
Sbjct: 296 KSPPYVY---------SSPPPYAYSPPPSPYVYKSPPYVYSSPPPYAYSP---PPSPYVY 343
Query: 116 DLNSMGLASEDSFGYEQWLSASSKPSLGEAQPYFPSYIPSTIPSPTSSVAAP 167
+S + Y S P + ++ PY S P SP +P
Sbjct: 344 KSPPYVYSSPPPYAY----SPPPSPYVYKSPPYVYSSPPPYTYSPPPYAYSP 391
Score = 35.8 bits (81), Expect = 1.2
Identities = 48/190 (25%), Positives = 68/190 (35%), Gaps = 49/190 (25%)
Query: 10 WGYYSPPQPHSTLSP---YAA----AFSVNRPPFNDVSAPFVDSDEP--AYGVPPN---- 56
+ Y PP P+ SP Y++ A+S P+ S P+V S P AY PP+
Sbjct: 260 YAYSPPPSPYVYKSPPYVYSSPPPYAYSPPPSPYVYKSPPYVYSSPPPYAYSPPPSPYVY 319
Query: 57 -----------PVHYPVHPRSYGYDFFPESDSVSKPYGYSGLAS-----EDSFWYDQWPP 100
P Y P Y Y P S PY YS S + Y PP
Sbjct: 320 KSPPYVYSSPPPYAYSPPPSPYVYKSPPYVYSSPPPYAYSPPPSPYVYKSPPYVYSSPPP 379
Query: 101 TSSKP---SLAEPQPCFPDLNSMGLASEDSFGYEQWLSASSKPSLGEAQPYFPSYIPSTI 157
+ P + + P PC D + ++ +S P + P P
Sbjct: 380 YTYSPPPYAYSPPPPC-----------PDVYKPPPYVYSSPPPYVYNPPPSSPP------ 422
Query: 158 PSPTSSVAAP 167
PSP+ S ++P
Sbjct: 423 PSPSYSYSSP 432
>gb|AAO23595.1| At1g10390/F14N23_29 [Arabidopsis thaliana]
gi|19310423|gb|AAL84948.1| At1g10390/F14N23_29
[Arabidopsis thaliana] gi|22329468|ref|NP_172510.2|
nucleoporin family protein [Arabidopsis thaliana]
Length = 1041
Score = 48.1 bits (113), Expect = 2e-04
Identities = 66/228 (28%), Positives = 89/228 (38%), Gaps = 37/228 (16%)
Query: 11 GYYSPPQPHSTLSPYAAAFSVNRPPFNDVSAPFVDSDEPAYGVPPNPVHYPVHPRS-YGY 69
G + PQ T SP+A+ P F S+P + PA+G +P P S +G
Sbjct: 62 GVFGAPQ---TSSPFAST-----PTFGASSSPAFGNSTPAFGA--SPASSPFGGSSGFGQ 111
Query: 70 DFFPESDSVSKPYGYSGLASEDSFWYDQWPPTSSKPSLAEPQPCF--PDLNSMGLASEDS 127
S S P+G S S+ +F + SS P A P F P S G S S
Sbjct: 112 KPLGFSTPQSNPFGNSTQQSQPAFGNTSF--GSSTPFGATNTPAFGAPSTPSFGATSTPS 169
Query: 128 FGYEQWLSASSKPSLGEAQ-PYF-----PSYIPSTIP----SPTSSVAAPIHWSSSSGFA 177
FG ASS P+ G P F PS+ + P SPT + + ++GF
Sbjct: 170 FG------ASSTPAFGATNTPAFGASNSPSFGATNTPAFGASPTPAFGSTGTTFGNTGFG 223
Query: 178 PLDVVPSFGDYAAENSSEFGFSGLGAGSWNQFSGFDHGKGKQVGAESS 225
S G + A N+ FG SG A + F GA S+
Sbjct: 224 ------SGGAFGASNTPAFGASGTPAFGASGTPAFGASSTPAFGASST 265
Score = 42.0 bits (97), Expect = 0.017
Identities = 50/196 (25%), Positives = 76/196 (38%), Gaps = 27/196 (13%)
Query: 13 YSPPQPHSTLSPYAAAFSVNRPPFNDVS----APFVDSDEPAYGVPPNPVHYPVHPRSYG 68
+S PQ + P+ + ++P F + S PF ++ PA+G P P S+G
Sbjct: 116 FSTPQSN----PFGNSTQQSQPAFGNTSFGSSTPFGATNTPAFGAPSTPSFGATSTPSFG 171
Query: 69 YDFFPESDSVSKPYGYSGLASEDSFWYDQWPPTSSKPSLAEPQPCF----PDLNSMGLAS 124
P + + P G ++ SF P A P P F + G S
Sbjct: 172 ASSTPAFGATNTP--AFGASNSPSFGATNTPAFG-----ASPTPAFGSTGTTFGNTGFGS 224
Query: 125 EDSFGYEQW--LSASSKPSLGEAQPYFPSYIPSTIPSPTSSVAAPIHWSSSSGFAPLDVV 182
+FG AS P+ G + P++ S+ P+ +S SS+ F
Sbjct: 225 GGAFGASNTPAFGASGTPAFGASGT--PAFGASSTPAFGASSTPAFGASSTPAFGG-SST 281
Query: 183 PSFGDYAAENSSEFGF 198
PSFG A N+S F F
Sbjct: 282 PSFG---ASNTSSFSF 294
Score = 37.4 bits (85), Expect = 0.41
Identities = 49/196 (25%), Positives = 70/196 (35%), Gaps = 26/196 (13%)
Query: 5 GSYNDWGYYSPPQPHSTLSPYAAAFSVNRPPFNDVSAP-FVDSDEPAYGVPPNPVHYPVH 63
GS +G + P + +P A S P F S P F ++ PA+G +P +
Sbjct: 141 GSSTPFGATNTPAFGAPSTPSFGATST--PSFGASSTPAFGATNTPAFGASNSPSFGATN 198
Query: 64 PRSYGYDFFPESDSVSKPYGYSGLASEDSFWYDQWPP------------------TSSKP 105
++G P S +G +G S +F P SS P
Sbjct: 199 TPAFGASPTPAFGSTGTTFGNTGFGSGGAFGASNTPAFGASGTPAFGASGTPAFGASSTP 258
Query: 106 SL-AEPQPCF--PDLNSMGLASEDSFGYEQWLSAS--SKPSLGEAQPYFPSYIPSTIPSP 160
+ A P F + G +S SFG S S S P+ G++ F S + PSP
Sbjct: 259 AFGASSTPAFGASSTPAFGGSSTPSFGASNTSSFSFGSSPAFGQSTSAFGSSAFGSTPSP 318
Query: 161 TSSVAAPIHWSSSSGF 176
A SGF
Sbjct: 319 FGGAQASTPTFGGSGF 334
>pir||S14181 DNA-directed RNA polymerase (EC 2.7.7.6) largest chain (isoform
B1) - soybean (fragment)
Length = 650
Score = 48.1 bits (113), Expect = 2e-04
Identities = 55/210 (26%), Positives = 82/210 (38%), Gaps = 26/210 (12%)
Query: 13 YSPPQPHSTLSPYAAAFSVNRPPFNDVSAPFVDSDEPAYGVPPNPVHYPVHPRSYGYDFF 72
YSP P + SP + A+S P ++ S P P+Y P +P + P P +
Sbjct: 443 YSPTSP--SYSPTSPAYSPTSPAYSPTS-PAYSPTSPSYS-PTSPSYSPTSP-----SYS 493
Query: 73 PESDSVSKPY-GYSGLASEDSFWYDQWPPTSSKPSLAEPQ--PCFPDLNSMGLASEDSFG 129
P S S S YS + S + PTS S P P P N S
Sbjct: 494 PTSPSYSPTSPSYSPTSPAYSPTSPGYSPTSPSYSPTSPSYSPTSPSYNPQSAKYSPSLA 553
Query: 130 YEQWLSASSKPSLGEAQPYFPSYIPSTIPSPTSSVAAPIHWSSSSGFAPLD-----VVPS 184
Y + S P L + PY P+ + SP+ S +P + SS ++P V P
Sbjct: 554 Y-----SPSSPRLSPSSPYSPTSPNYSPTSPSYSPTSPSYSPSSPTYSPSSPYNSGVSPD 608
Query: 185 FGDYAAENSSEFGFS----GLGAGSWNQFS 210
+ + + S G+S G S +Q++
Sbjct: 609 YSPSSPQFSPSTGYSPSQPGYSPSSTSQYT 638
>emb|CAA36734.1| DNA-directed RNA polymerase [Glycine max]
Length = 494
Score = 47.4 bits (111), Expect = 4e-04
Identities = 56/213 (26%), Positives = 83/213 (38%), Gaps = 25/213 (11%)
Query: 13 YSPPQPHSTLSPYAAAFSVNRPPFNDVSAPFVDSDEPAYGVPPNPVHYPVHPR----SYG 68
YSP P + SP + ++S P ++ S P PAY P +P + P P S
Sbjct: 280 YSPTSP--SYSPTSPSYSPTSPSYSPTS-PAYSPTSPAYS-PTSPSYSPTSPSYSPTSPS 335
Query: 69 YDFFPESDSVSKPYGYSGLASEDSFWYDQWPPTSSKPSLAEPQ--PCFPDLNSMGLASED 126
Y S S + P YS + S + PTS S P P P N
Sbjct: 336 YSPTSPSYSPTSP-SYSPTSPAYSPTSPGYSPTSPSYSPTSPSYSPTSPSYNPQSAKYSP 394
Query: 127 SFGYEQWLSASSKPSLGEAQPYFPSYIPSTIPSPTSSVAAPIHWSSSSGFAPLD-----V 181
S Y + S P L + PY P+ + SP+ S +P + SS ++P V
Sbjct: 395 SLAY-----SPSSPRLSPSSPYSPTSPNYSPTSPSYSPTSPSYSPSSPTYSPSSPYNSGV 449
Query: 182 VPSFGDYAAENSSEFGFS----GLGAGSWNQFS 210
P + + + S G+S G S +Q++
Sbjct: 450 SPDYSPSSPQFSPSTGYSPSQPGYSPSSTSQYT 482
>gb|AAA96158.2| Amanitin resistant protein 1 [Caenorhabditis elegans]
gi|21542435|sp|P16356|RPB1_CAEEL DNA-directed RNA
polymerase II largest subunit
Length = 1852
Score = 47.4 bits (111), Expect = 4e-04
Identities = 49/178 (27%), Positives = 71/178 (39%), Gaps = 13/178 (7%)
Query: 3 GAGSYND--WGYYSPPQPHSTLSPYAAAFSVNRPPFNDVSAPFVDSDEPAYGVPPNPVHY 60
GA +N+ W SP P LSP ++ P S+P P Y P +P +
Sbjct: 1539 GASPFNEGGWSPASPGDPLGALSPRTPSYGGMSPGVYSPSSPQFSMTSPHYS-PTSPSYS 1597
Query: 61 PVHPRSYGYDFFPESDSVSKPYGYSGLASEDSFWYDQWPPTSSKPSLAEPQPCFPDLNSM 120
P P + G S S + P YS + S + PTS PS + P + +
Sbjct: 1598 PTSPAA-GQSPVSPSYSPTSP-SYSPTSPSYSPTSPSYSPTS--PSYSPTSPSYSPTSPS 1653
Query: 121 GLASEDSFGYEQWLSASSKPSLGEAQPYFPSYIPSTIPSPTSSVAAPIHWSSSSGFAP 178
S S+ S S PS P P+Y P+ SPT S +P + +S ++P
Sbjct: 1654 YSPSSPSYSPS---SPSYSPSSPRYSPTSPTYSPT---SPTYSPTSPTYSPTSPTYSP 1705
Score = 40.0 bits (92), Expect = 0.064
Identities = 55/196 (28%), Positives = 74/196 (37%), Gaps = 36/196 (18%)
Query: 13 YSPPQPHSTLSPYAAAFSVNRPPFNDVSAPFVDSDEPAYGVPPNPVHYPVHPRSY----G 68
YSP P + SP + +S P ++ S P P Y P +P + P P SY G
Sbjct: 1661 YSPSSP--SYSPSSPRYSPTSPTYSPTS-PTYSPTSPTYS-PTSPTYSPTSP-SYESGGG 1715
Query: 69 YDFFPESDSVSKPYGYSGLASEDSFWYDQWPPTS-----SKPSLAEPQPCFPDLNSMGLA 123
Y S S P YS + S Q+ PTS S P+ P + + G +
Sbjct: 1716 YSPSSPKYSPSSPT-YSPTSPSYSPTSPQYSPTSPQYSPSSPTYTPSSPTYNPTSPRGFS 1774
Query: 124 SEDSFGYEQWLSASSK---PSLGEAQPYFPSYIPS-------------TIP-----SPTS 162
S S +S PS + P P+Y PS T P SPT
Sbjct: 1775 SPQYSPTSPTYSPTSPSYTPSSPQYSPTSPTYTPSPSEQPGTSAQYSPTSPTYSPSSPTY 1834
Query: 163 SVAAPIHWSSSSGFAP 178
S A+P + SS + P
Sbjct: 1835 SPASPSYSPSSPTYDP 1850
>ref|NP_500523.2| DNA-directed RNA polymerase II largest subunit, AMAnitin resistant
AMA-1 (205.0 kD) (ama-1) [Caenorhabditis elegans]
Length = 1862
Score = 47.4 bits (111), Expect = 4e-04
Identities = 49/178 (27%), Positives = 71/178 (39%), Gaps = 13/178 (7%)
Query: 3 GAGSYND--WGYYSPPQPHSTLSPYAAAFSVNRPPFNDVSAPFVDSDEPAYGVPPNPVHY 60
GA +N+ W SP P LSP ++ P S+P P Y P +P +
Sbjct: 1549 GASPFNEGGWSPASPGDPLGALSPRTPSYGGMSPGVYSPSSPQFSMTSPHYS-PTSPSYS 1607
Query: 61 PVHPRSYGYDFFPESDSVSKPYGYSGLASEDSFWYDQWPPTSSKPSLAEPQPCFPDLNSM 120
P P + G S S + P YS + S + PTS PS + P + +
Sbjct: 1608 PTSPAA-GQSPVSPSYSPTSP-SYSPTSPSYSPTSPSYSPTS--PSYSPTSPSYSPTSPS 1663
Query: 121 GLASEDSFGYEQWLSASSKPSLGEAQPYFPSYIPSTIPSPTSSVAAPIHWSSSSGFAP 178
S S+ S S PS P P+Y P+ SPT S +P + +S ++P
Sbjct: 1664 YSPSSPSYSPS---SPSYSPSSPRYSPTSPTYSPT---SPTYSPTSPTYSPTSPTYSP 1715
Score = 40.0 bits (92), Expect = 0.064
Identities = 55/196 (28%), Positives = 74/196 (37%), Gaps = 36/196 (18%)
Query: 13 YSPPQPHSTLSPYAAAFSVNRPPFNDVSAPFVDSDEPAYGVPPNPVHYPVHPRSY----G 68
YSP P + SP + +S P ++ S P P Y P +P + P P SY G
Sbjct: 1671 YSPSSP--SYSPSSPRYSPTSPTYSPTS-PTYSPTSPTYS-PTSPTYSPTSP-SYESGGG 1725
Query: 69 YDFFPESDSVSKPYGYSGLASEDSFWYDQWPPTS-----SKPSLAEPQPCFPDLNSMGLA 123
Y S S P YS + S Q+ PTS S P+ P + + G +
Sbjct: 1726 YSPSSPKYSPSSPT-YSPTSPSYSPTSPQYSPTSPQYSPSSPTYTPSSPTYNPTSPRGFS 1784
Query: 124 SEDSFGYEQWLSASSK---PSLGEAQPYFPSYIPS-------------TIP-----SPTS 162
S S +S PS + P P+Y PS T P SPT
Sbjct: 1785 SPQYSPTSPTYSPTSPSYTPSSPQYSPTSPTYTPSPSEQPGTSAQYSPTSPTYSPSSPTY 1844
Query: 163 SVAAPIHWSSSSGFAP 178
S A+P + SS + P
Sbjct: 1845 SPASPSYSPSSPTYDP 1860
>pir||S14182 DNA-directed RNA polymerase (EC 2.7.7.6) largest chain (isoform
B2) - soybean (fragment)
Length = 491
Score = 47.4 bits (111), Expect = 4e-04
Identities = 56/213 (26%), Positives = 83/213 (38%), Gaps = 25/213 (11%)
Query: 13 YSPPQPHSTLSPYAAAFSVNRPPFNDVSAPFVDSDEPAYGVPPNPVHYPVHPR----SYG 68
YSP P + SP + ++S P ++ S P PAY P +P + P P S
Sbjct: 277 YSPTSP--SYSPTSPSYSPTSPSYSPTS-PAYSPTSPAYS-PTSPSYSPTSPSYSPTSPS 332
Query: 69 YDFFPESDSVSKPYGYSGLASEDSFWYDQWPPTSSKPSLAEPQ--PCFPDLNSMGLASED 126
Y S S + P YS + S + PTS S P P P N
Sbjct: 333 YSPTSPSYSPTSP-SYSPTSPAYSPTSPGYSPTSPSYSPTSPSYSPTSPSYNPQSAKYSP 391
Query: 127 SFGYEQWLSASSKPSLGEAQPYFPSYIPSTIPSPTSSVAAPIHWSSSSGFAPLD-----V 181
S Y + S P L + PY P+ + SP+ S +P + SS ++P V
Sbjct: 392 SLAY-----SPSSPRLSPSSPYSPTSPNYSPTSPSYSPTSPSYSPSSPTYSPSSPYNSGV 446
Query: 182 VPSFGDYAAENSSEFGFS----GLGAGSWNQFS 210
P + + + S G+S G S +Q++
Sbjct: 447 SPDYSPSSPQFSPSTGYSPSQPGYSPSSTSQYT 479
>pir||T29959 DNA-directed RNA polymerase II large subunit ama-1 - Caenorhabditis
elegans
Length = 1862
Score = 47.4 bits (111), Expect = 4e-04
Identities = 49/178 (27%), Positives = 71/178 (39%), Gaps = 13/178 (7%)
Query: 3 GAGSYND--WGYYSPPQPHSTLSPYAAAFSVNRPPFNDVSAPFVDSDEPAYGVPPNPVHY 60
GA +N+ W SP P LSP ++ P S+P P Y P +P +
Sbjct: 1549 GASPFNEGGWSPASPGDPLGALSPRTPSYGGMSPGVYSPSSPQFSMTSPHYS-PTSPSYS 1607
Query: 61 PVHPRSYGYDFFPESDSVSKPYGYSGLASEDSFWYDQWPPTSSKPSLAEPQPCFPDLNSM 120
P P + G S S + P YS + S + PTS PS + P + +
Sbjct: 1608 PTSPAA-GQSPVSPSYSPTSP-SYSPTSPSYSPTSPSYSPTS--PSYSPTSPSYSPTSPS 1663
Query: 121 GLASEDSFGYEQWLSASSKPSLGEAQPYFPSYIPSTIPSPTSSVAAPIHWSSSSGFAP 178
S S+ S S PS P P+Y P+ SPT S +P + +S ++P
Sbjct: 1664 YSPSSPSYSPS---SPSYSPSSPRYSPTSPTYSPT---SPTYSPTSPTYSPTSPTYSP 1715
Score = 40.0 bits (92), Expect = 0.064
Identities = 55/196 (28%), Positives = 74/196 (37%), Gaps = 36/196 (18%)
Query: 13 YSPPQPHSTLSPYAAAFSVNRPPFNDVSAPFVDSDEPAYGVPPNPVHYPVHPRSY----G 68
YSP P + SP + +S P ++ S P P Y P +P + P P SY G
Sbjct: 1671 YSPSSP--SYSPSSPRYSPTSPTYSPTS-PTYSPTSPTYS-PTSPTYSPTSP-SYESGGG 1725
Query: 69 YDFFPESDSVSKPYGYSGLASEDSFWYDQWPPTS-----SKPSLAEPQPCFPDLNSMGLA 123
Y S S P YS + S Q+ PTS S P+ P + + G +
Sbjct: 1726 YSPSSPKYSPSSPT-YSPTSPSYSPTSPQYSPTSPQYSPSSPTYTPSSPTYNPTSPRGFS 1784
Query: 124 SEDSFGYEQWLSASSK---PSLGEAQPYFPSYIPS-------------TIP-----SPTS 162
S S +S PS + P P+Y PS T P SPT
Sbjct: 1785 SPQYSPTSPTYSPTSPSYTPSSPQYSPTSPTYTPSPSEQPGTSAQYSPTSPTYSPSSPTY 1844
Query: 163 SVAAPIHWSSSSGFAP 178
S A+P + SS + P
Sbjct: 1845 SPASPSYSPSSPTYDP 1860
>gb|AAA28126.1| RNA polymerase II
Length = 1859
Score = 47.4 bits (111), Expect = 4e-04
Identities = 49/178 (27%), Positives = 71/178 (39%), Gaps = 13/178 (7%)
Query: 3 GAGSYND--WGYYSPPQPHSTLSPYAAAFSVNRPPFNDVSAPFVDSDEPAYGVPPNPVHY 60
GA +N+ W SP P LSP ++ P S+P P Y P +P +
Sbjct: 1546 GASPFNEGGWSPASPGDPLGALSPRTPSYGGMSPGVYSPSSPQFSMTSPHYS-PTSPSYS 1604
Query: 61 PVHPRSYGYDFFPESDSVSKPYGYSGLASEDSFWYDQWPPTSSKPSLAEPQPCFPDLNSM 120
P P + G S S + P YS + S + PTS PS + P + +
Sbjct: 1605 PTSPAA-GQSPVSPSYSPTSP-SYSPTSPSYSPTSPSYSPTS--PSYSPTSPSYSPTSPS 1660
Query: 121 GLASEDSFGYEQWLSASSKPSLGEAQPYFPSYIPSTIPSPTSSVAAPIHWSSSSGFAP 178
S S+ S S PS P P+Y P+ SPT S +P + +S ++P
Sbjct: 1661 YSPSSPSYSPS---SPSYSPSSPRYSPTSPTYSPT---SPTYSPTSPTYSPTSPTYSP 1712
Score = 40.0 bits (92), Expect = 0.064
Identities = 55/196 (28%), Positives = 74/196 (37%), Gaps = 36/196 (18%)
Query: 13 YSPPQPHSTLSPYAAAFSVNRPPFNDVSAPFVDSDEPAYGVPPNPVHYPVHPRSY----G 68
YSP P + SP + +S P ++ S P P Y P +P + P P SY G
Sbjct: 1668 YSPSSP--SYSPSSPRYSPTSPTYSPTS-PTYSPTSPTYS-PTSPTYSPTSP-SYESGGG 1722
Query: 69 YDFFPESDSVSKPYGYSGLASEDSFWYDQWPPTS-----SKPSLAEPQPCFPDLNSMGLA 123
Y S S P YS + S Q+ PTS S P+ P + + G +
Sbjct: 1723 YSPSSPKYSPSSPT-YSPTSPSYSPTSPQYSPTSPQYSPSSPTYTPSSPTYNPTSPRGFS 1781
Query: 124 SEDSFGYEQWLSASSK---PSLGEAQPYFPSYIPS-------------TIP-----SPTS 162
S S +S PS + P P+Y PS T P SPT
Sbjct: 1782 SPQYSPTSPTYSPTSPSYTPSSPQYSPTSPTYTPSPSEQPGTSAQYSPTSPTYSPSSPTY 1841
Query: 163 SVAAPIHWSSSSGFAP 178
S A+P + SS + P
Sbjct: 1842 SPASPSYSPSSPTYDP 1857
>emb|CAA36733.1| DNA-directed RNA polymerase [Glycine max] gi|7434728|pir||T07796
DNA-directed RNA polymerase (EC 2.7.7.6) largest chain -
soybean (fragment)
Length = 625
Score = 46.2 bits (108), Expect = 9e-04
Identities = 47/169 (27%), Positives = 67/169 (38%), Gaps = 17/169 (10%)
Query: 13 YSPPQPHSTLSPYAAAFSVNRPPFNDVSAPFVDSDEPAYGVPPNPVHYPVHPRSYGYDFF 72
YSP P + SP + A+S P ++ S P P+Y P +P + P P +
Sbjct: 447 YSPTSP--SYSPTSPAYSPTSPAYSPTS-PAYSPTSPSYS-PTSPSYSPTSP-----SYS 497
Query: 73 PESDSVSKPY-GYSGLASEDSFWYDQWPPTSSKPSLAEPQ--PCFPDLNSMGLASEDSFG 129
P S S S YS + S + PTS S P P P N S
Sbjct: 498 PTSPSYSPTSPSYSPTSPAYSPTSPGYSPTSPSYSPTSPSYSPTSPSYNPQSAKYSPSLA 557
Query: 130 YEQWLSASSKPSLGEAQPYFPSYIPSTIPSPTSSVAAPIHWSSSSGFAP 178
Y + S P L + PY P+ + SP+ S +P + SS ++P
Sbjct: 558 Y-----SPSSPRLSPSSPYSPTSPNYSPTSPSYSPTSPSYSPSSPTYSP 601
>ref|XP_317690.2| ENSANGP00000010305 [Anopheles gambiae str. PEST]
gi|55237903|gb|EAA12308.2| ENSANGP00000010305 [Anopheles
gambiae str. PEST]
Length = 1877
Score = 45.1 bits (105), Expect = 0.002
Identities = 45/170 (26%), Positives = 70/170 (40%), Gaps = 16/170 (9%)
Query: 13 YSPPQPHSTLSPYAAAFSVNRPPFNDVSAPFVDSDEPAYGVPPNPVHYPVHPRSYGYDFF 72
YSP P+ T P ++S + P ++ S P P+Y P +P + P P +
Sbjct: 1700 YSPTSPNFT--PVTPSYSPSSPNYSPTS-PHYSPASPSYS-PSSPKYSPTSP-----SYS 1750
Query: 73 PESDSVSKPYGYSGLASEDSFWYDQWPPTSSKPSLAEPQPCFPDLNSMGLASEDSFGYEQ 132
P S S Y+ + + + PTS PS + P +S S S Y Q
Sbjct: 1751 PTSPSYIGSPHYTPASPQYGQASPNYSPTS--PSYSPSSPQHSPGSSSNHYSIGSSSYSQ 1808
Query: 133 WLSASSKPSLGEAQPYFPSYIPS----TIPSPTSSVAAPIHWSSSSGFAP 178
A P++ P P Y P+ T SPT S ++P + + G++P
Sbjct: 1809 -TPAPYSPNMSSYSPSSPKYSPTSPVYTSSSPTYSPSSPAYSPTPQGYSP 1857
Score = 40.4 bits (93), Expect = 0.049
Identities = 54/218 (24%), Positives = 87/218 (39%), Gaps = 28/218 (12%)
Query: 13 YSPPQPHSTLSPYAAAFSVNRPPFNDVSAPFVDSDEPAYGVPPNPVHYP---------VH 63
YSPP P SP ++ +S + P + + + + P+Y P +P+H
Sbjct: 1597 YSPPSPQ--YSPGSSNYSPSSPNIHSATQNYSPTS-PSYS-PMSPMHPTSASNFASPGYS 1652
Query: 64 PRSYGYDFFPESDSVSKPY------GYSGLASEDSFWYDQWPPTSSKPSLAEPQ--PCFP 115
P S Y S S S P YS + S + PTS S P P P
Sbjct: 1653 PTSPSYSPTSPSYSPSSPVFSPTSPSYSPSSPSYSPTSPSYSPTSPSYSPTSPNFTPVTP 1712
Query: 116 DLNSMGLASEDSFGYEQWLSASSKPSLGEAQPYFPSYIPST---IPSPTSSVAAPIHWSS 172
+ + + S S PS + P PSY P++ I SP + A+P + +
Sbjct: 1713 SYSPSSPNYSPTSPHYSPASPSYSPSSPKYSPTSPSYSPTSPSYIGSPHYTPASPQYGQA 1772
Query: 173 SSGFAPLDVVPSFGDYAAENS--SEFGFSGLGAGSWNQ 208
S ++P PS+ + ++S S +G+ S++Q
Sbjct: 1773 SPNYSPTS--PSYSPSSPQHSPGSSSNHYSIGSSSYSQ 1808
Score = 39.7 bits (91), Expect = 0.083
Identities = 52/200 (26%), Positives = 75/200 (37%), Gaps = 39/200 (19%)
Query: 14 SPPQPHSTLSPYAAAFSVNRPPFNDVS-----------APFVDSDEPAYGVPPNPVHYP- 61
SP P ++SPY + P ++ S +P P Y PP+P + P
Sbjct: 1549 SPSSPGPSMSPYPPSSPSMSPSYSPSSPNYAPNSPGGASPSYSPTSPGYS-PPSPQYSPG 1607
Query: 62 ----------VHPRSYGYDFFPESDSVSKPYGYSGLASEDSFWYDQWPPTS-----SKPS 106
+H + Y P S S S P S +F + PTS + PS
Sbjct: 1608 SSNYSPSSPNIHSATQNYS--PTSPSYS-PMSPMHPTSASNFASPGYSPTSPSYSPTSPS 1664
Query: 107 LAEPQPCFPDLNSMGLASEDSFGYEQWLSASSKPSLGEAQPYF----PSYIPSTIP-SPT 161
+ P F + S S+ + + PS P F PSY PS+ SPT
Sbjct: 1665 YSPSSPVFSPTSPSYSPSSPSYSPTSPSYSPTSPSYSPTSPNFTPVTPSYSPSSPNYSPT 1724
Query: 162 S---SVAAPIHWSSSSGFAP 178
S S A+P + SS ++P
Sbjct: 1725 SPHYSPASPSYSPSSPKYSP 1744
Score = 38.1 bits (87), Expect = 0.24
Identities = 42/168 (25%), Positives = 66/168 (39%), Gaps = 19/168 (11%)
Query: 13 YSPPQPHSTLSPYAAAFSVNRPPFNDVSAPFVDSDEPAYGVPPNPVHYPVHPRSYGY--- 69
YSP PH SP + ++S + P ++ S + + G P HY YG
Sbjct: 1721 YSPTSPH--YSPASPSYSPSSPKYSPTSPSYSPTSPSYIGSP----HYTPASPQYGQASP 1774
Query: 70 DFFPESDSVSKPYGYSGLASEDSFWYDQWPPTSSKPSLAEPQPCFPDLNSMGLASEDSFG 129
++ P S S S S + + S P P P+++S S +
Sbjct: 1775 NYSPTSPSYSPSSPQHSPGSSSNHY-----SIGSSSYSQTPAPYSPNMSSYS-PSSPKYS 1828
Query: 130 YEQWLSASSKPSLGEAQP-YFPS---YIPSTIPSPTSSVAAPIHWSSS 173
+ SS P+ + P Y P+ Y PS+ SPT S +P + S+
Sbjct: 1829 PTSPVYTSSSPTYSPSSPAYSPTPQGYSPSSPASPTYSPTSPSYDDSN 1876
>emb|CAA37130.1| RNA polymerase II [Arabidopsis thaliana]
Length = 1841
Score = 44.3 bits (103), Expect = 0.003
Identities = 52/168 (30%), Positives = 74/168 (43%), Gaps = 16/168 (9%)
Query: 13 YSPPQPHSTLSPYAAAFSVNRPPFNDVSAPFVDSDEPAYGVPPNPVHYPVHPRSYGYDFF 72
YSP P + SP + ++S P ++ S P P+Y P +P + P P GY
Sbjct: 1651 YSPTSP--SYSPTSPSYSPTSPSYSPTS-PSYSPTSPSYS-PTSPAYSPTSP---GYSPT 1703
Query: 73 PESDSVSKPYGYSGLASEDSFWYDQWPPTSSK--PSLAEPQPCFPDLNSMGLASEDSFGY 130
S S + P YS + + P S+K PS+A P L+ S S Y
Sbjct: 1704 SPSYSPTSP-SYSPTSPSYGPTSPSYNPQSAKYSPSIAY-SPSNARLSPASPYSPTSPNY 1761
Query: 131 EQWLSASSKPSLGEAQPYFPSYIPSTIPSPTSSVAAPIHWSSSSGFAP 178
S S P+ P P+Y PS SP SS A+P +S S+G++P
Sbjct: 1762 SP-TSPSYSPTSPSYSPSSPTYSPS---SPYSSGASP-DYSPSAGYSP 1804
Score = 37.0 bits (84), Expect = 0.54
Identities = 43/167 (25%), Positives = 67/167 (39%), Gaps = 27/167 (16%)
Query: 13 YSPPQPHSTLSPYAAAFSVNRPPFNDVSAPFVDSDEPAYGVPPNPVHYPVHPRSYGY--- 69
YSP P + SP + ++S P ++ S P P+Y P +P + P P SYG
Sbjct: 1672 YSPTSP--SYSPTSPSYSPTSPAYSPTS-PGYSPTSPSYS-PTSPSYSPTSP-SYGPTSP 1726
Query: 70 DFFPESDSVSKPYGYSGLASEDSFWYDQWPPTSSKPSLAEP-QPCFPDLNSMGLASEDSF 128
+ P+S S YS P++++ S A P P P+ + + S+
Sbjct: 1727 SYNPQSAKYSPSIAYS--------------PSNARLSPASPYSPTSPNYSP----TSPSY 1768
Query: 129 GYEQWLSASSKPSLGEAQPYFPSYIPSTIPSPTSSVAAPIHWSSSSG 175
+ S P+ + PY P PS S P + SS+G
Sbjct: 1769 SPTSPSYSPSSPTYSPSSPYSSGASPDYSPSAGYSPTLPGYSPSSTG 1815
>gb|AAN05431.1| phospholipase D beta 1 isoform 1b [Gossypium hirsutum]
Length = 1162
Score = 44.3 bits (103), Expect = 0.003
Identities = 62/235 (26%), Positives = 89/235 (37%), Gaps = 45/235 (19%)
Query: 2 EGAGSYNDWGYYSPPQPHSTLSPYAAAFSVNRPPFNDVSAPFVDSDEPAYGVPPNPV--- 58
+ + SY G Y+PP+ +S L +FS + D YG NP
Sbjct: 131 QSSSSYQQPGQYTPPESNSELLSTHISFSGHN-----------RQDSTKYGSTFNPYQQS 179
Query: 59 ---HYPVHPRSYGYDFFPESDSV-SKPYGYSGLASEDSFWYDQWPPTSSKPSLAEPQPCF 114
HYP P+S P+S S +P Y +S Q+ P S L F
Sbjct: 180 LSGHYP-PPKSN-----PQSSSTYQQPAQYPPQSSSSYQQPGQYTPPESNSELLSTHISF 233
Query: 115 PDLNSMGLASEDSFGYEQWLSASSKPSLGEAQPYFPS-YIPSTIPSPTSSVAAPIHWSSS 173
N +DS Y S S+ P+ F + ++ + PS +S AP+
Sbjct: 234 SGHN-----RQDSTSYLAANSGSASPAYPLLDHQFSNMHLSGSHPSAPASPLAPLG---- 284
Query: 174 SGFAPLDVVPSFGDYAAENSSEFGFSGLGAGSWN--------QFSGFDHGKGKQV 220
PL S DYA+E+S+ G S A S N F+G G+G Q+
Sbjct: 285 ---PPLAAATSTPDYASESSNWEGLSLGRADSANHSTFSHNHSFNGSQKGQGMQI 336
>ref|XP_493925.1| similar to Arabidopsis thaliana DNA-directed RNA polymerase (EC
2.7.7.6) II largest chain (JDMU1) [Oryza sativa]
gi|54291834|gb|AAV32202.1| putative RNA polymerase II
[Oryza sativa (japonica cultivar-group)]
Length = 1741
Score = 43.5 bits (101), Expect = 0.006
Identities = 46/165 (27%), Positives = 66/165 (39%), Gaps = 18/165 (10%)
Query: 13 YSPPQPHSTLSPYAAAFSVNRPPFNDVSAPFVDSDEPAYGVPP-NPVHYPVHPRSYGYDF 71
YSP P +P ++A+S P +N S P+Y P +P + P P SY Y
Sbjct: 1586 YSPTSP--VYNPTSSAYSPTSPSYNPTS--------PSYSYSPTSPSYSPTSP-SYSYSP 1634
Query: 72 FPESDSVSKP-YGYSGLASEDSFWYDQWPPTSSKPSLAEP--QPCFPDLNSMGLASEDSF 128
S S + P Y YS + S + PTS S P P P + A +
Sbjct: 1635 TSPSYSPTSPSYNYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSSAYSPTS 1694
Query: 129 GYEQWLSASSKPSLGEAQPYFPSYIPSTI---PSPTSSVAAPIHW 170
S P+ P PSY PS++ PS S ++P ++
Sbjct: 1695 PAYSPTSPGYSPTSPSYSPSSPSYNPSSVKYTPSHAYSPSSPNYY 1739
>emb|CAA32090.1| unnamed protein product [Nicotiana tabacum] gi|82169|pir||S06733
hydroxyproline-rich glycoprotein precursor - common
tobacco gi|119714|sp|P13983|EXTN_TOBAC Extensin
precursor (Cell wall hydroxyproline-rich glycoprotein)
Length = 620
Score = 43.1 bits (100), Expect = 0.008
Identities = 50/175 (28%), Positives = 64/175 (36%), Gaps = 26/175 (14%)
Query: 13 YSPPQPHSTLSPYAAAFSVNRPPFNDVSAPFVDSDEPAYGVPPN-----PVHYPVHPRSY 67
YSPP P SP A+S + PP P PAY PP P + P+ P S
Sbjct: 289 YSPPPPSPIYSPPPPAYSPSPPP---TPTPTFSPPPPAYSPPPTYSPPPPTYLPL-PSSP 344
Query: 68 GYDFFPESDSVSKPYGYSGLASEDSFWYDQWPPTSS--KPSLAEPQPCF------PDLNS 119
Y P S P YS Y PP SS PS + P P + P S
Sbjct: 345 IYSPPPPVYSPPPPPSYSPPPPT----YLPPPPPSSPPPPSFSPPPPTYEQSPPPPPAYS 400
Query: 120 MGLASEDSFGYEQWLSASSKPSLGEAQPYFPSYIP-----STIPSPTSSVAAPIH 169
L + ++ + P+ + P P+Y P S P PT S P +
Sbjct: 401 PPLPAPPTYSPPPPTYSPPPPTYAQPPPLPPTYSPPPPAYSPPPPPTYSPPPPTY 455
Score = 37.7 bits (86), Expect = 0.32
Identities = 49/170 (28%), Positives = 58/170 (33%), Gaps = 24/170 (14%)
Query: 13 YSPPQPHSTLSPYAAAFSVNRPPFNDVSAPFVDSDEPAYGVPPNPVHYPVHPRSYGYDFF 72
YSPP P SP + PP P P Y PP P + P P + F
Sbjct: 265 YSPPPPAYAQSPQPSPTYSPPPPTYSPPPP-----SPIYS-PPPPAYSPSPPPTPTPTFS 318
Query: 73 PESDSVSKPYGYSG-----LASEDSFWYDQWPPTSS---KPSLAEPQPCFPDLNSMGLAS 124
P + S P YS L S Y PP S PS + P P +
Sbjct: 319 PPPPAYSPPPTYSPPPPTYLPLPSSPIYSPPPPVYSPPPPPSYSPPPPTYLPPPPPSSPP 378
Query: 125 EDSFG-----YEQWLSASSKPSLGEAQPYFPSYIPSTIPSPTSSVAAPIH 169
SF YEQ S P+ P P+Y P P PT S P +
Sbjct: 379 PPSFSPPPPTYEQ--SPPPPPAYSPPLPAPPTYSP---PPPTYSPPPPTY 423
Score = 33.5 bits (75), Expect = 6.0
Identities = 42/159 (26%), Positives = 52/159 (32%), Gaps = 11/159 (6%)
Query: 13 YSPPQPHSTLSPYAAAFSVNRPPFNDVSAPFVDSDEPAYGVPPNPVHYPVHPRSYGYDFF 72
YSPP P P + +S P ++ P P Y PP P P P S+
Sbjct: 330 YSPPPPTYLPLPSSPIYSPPPPVYSPPPPPSYSPPPPTYLPPPPPSSPP--PPSFSPPPP 387
Query: 73 PESDSVSKPYGYSGLASEDSFWYDQWPPTSS--KPSLAEPQPCFPDLNSMGLASEDSFGY 130
S P YS Y PPT S P+ A+P P P S Y
Sbjct: 388 TYEQSPPPPPAYSPPLPAPP-TYSPPPPTYSPPPPTYAQPPPLPPTY------SPPPPAY 440
Query: 131 EQWLSASSKPSLGEAQPYFPSYIPSTIPSPTSSVAAPIH 169
+ P P P+Y P PT S P +
Sbjct: 441 SPPPPPTYSPPPPTYSPPPPAYAQPPPPPPTYSPPPPAY 479
>gb|AAP68277.1| At5g04170 [Arabidopsis thaliana] gi|9955572|emb|CAC05499.1| EF-hand
Calcium binding protein-like [Arabidopsis thaliana]
gi|19698991|gb|AAL91231.1| EF-hand calcium binding
protein-like [Arabidopsis thaliana]
gi|22326598|ref|NP_196037.2| calcium-binding EF hand
family protein [Arabidopsis thaliana]
Length = 354
Score = 42.7 bits (99), Expect = 0.010
Identities = 46/175 (26%), Positives = 62/175 (35%), Gaps = 23/175 (13%)
Query: 7 YNDWGYYSPPQPHSTLSPYAAAFSVNRPPFNDVSAPFVDSDEPAYGVPPNPVHYPVHPRS 66
Y+ G P +T SPYA + ++P + SAP S +YG PP Y P
Sbjct: 28 YSSGGNNPPYGSSTTSSPYAVPYGASKPQSSSSSAPTYGSS--SYGAPPPSAPYAPSPGD 85
Query: 67 YGYDFFPESDSVSKPYGYSGLASEDSFWYDQWPPTSSK---PSLAEPQPCFPDLNSMGLA 123
Y KPYG Y PP+ S A P+P P + G
Sbjct: 86 Y------NKPPKEKPYGGG---------YGAPPPSGSSDYGSYGAGPRPSQPSGHGGGYG 130
Query: 124 SEDSFGYEQWLSASSKPSLGEAQPYFPSYIPSTIPSPTSSVAAPIHWSSSSGFAP 178
+ G + S P + + Y P P +S +P SGFAP
Sbjct: 131 ATPPHGVSDYGSYGGAPPRPASSGHGGGY--GGYP-PQASYGSPFASLIPSGFAP 182
>emb|CAA36735.1| DNA-directed RNA polymerase [Arabidopsis thaliana]
Length = 1860
Score = 42.4 bits (98), Expect = 0.013
Identities = 52/168 (30%), Positives = 73/168 (42%), Gaps = 23/168 (13%)
Query: 13 YSPPQPHSTLSPYAAAFSVNRPPFNDVSAPFVDSDEPAYGVPPNPVHYPVHPRSYGYDFF 72
YSP P + SP + ++S P ++ S P P+Y P +P + P P GY
Sbjct: 1677 YSPTSP--SYSPTSPSYSPTSPSYSPTS-PSYSPTSPSYS-PTSPAYSPTSP---GYSPT 1729
Query: 73 PESDSVSKP-YGYSGLA-SEDSFWYDQWPPTSSKPSLAEPQPCFPDLNSMGLASEDSFGY 130
S S + P YG + + + S Y P + PS A P P S S Y
Sbjct: 1730 SPSYSPTSPSYGPTSPSYNPQSAKYS--PSIAYSPSNARLSPASP-------YSPTSPNY 1780
Query: 131 EQWLSASSKPSLGEAQPYFPSYIPSTIPSPTSSVAAPIHWSSSSGFAP 178
S S P+ P P+Y PS SP SS A+P +S S+G++P
Sbjct: 1781 SP-TSPSYSPTSPSYSPSSPTYSPS---SPYSSGASP-DYSPSAGYSP 1823
Score = 37.0 bits (84), Expect = 0.54
Identities = 43/167 (25%), Positives = 66/167 (38%), Gaps = 27/167 (16%)
Query: 13 YSPPQPHSTLSPYAAAFSVNRPPFNDVSAPFVDSDEPAYGVPPNPVHYPVHPRSYGY--- 69
YSP P + SP + ++S P ++ S P P Y P +P + P P SYG
Sbjct: 1691 YSPTSP--SYSPTSPSYSPTSPSYSPTS-PAYSPTSPGYS-PTSPSYSPTSP-SYGPTSP 1745
Query: 70 DFFPESDSVSKPYGYSGLASEDSFWYDQWPPTSSKPSLAEP-QPCFPDLNSMGLASEDSF 128
+ P+S S YS P++++ S A P P P+ + + S+
Sbjct: 1746 SYNPQSAKYSPSIAYS--------------PSNARLSPASPYSPTSPNYSP----TSPSY 1787
Query: 129 GYEQWLSASSKPSLGEAQPYFPSYIPSTIPSPTSSVAAPIHWSSSSG 175
+ S P+ + PY P PS S P + SS+G
Sbjct: 1788 SPTSPSYSPSSPTYSPSSPYSSGASPDYSPSAGYSPTLPGYSPSSTG 1834
>emb|CAI51953.1| polymerase (RNA) II (DNA directed) polypeptide A [Mus musculus]
gi|133327|sp|P08775|RPB1_MOUSE DNA-directed RNA
polymerase II largest subunit (RPB1)
Length = 1970
Score = 42.4 bits (98), Expect = 0.013
Identities = 46/171 (26%), Positives = 71/171 (40%), Gaps = 19/171 (11%)
Query: 13 YSPPQPHSTLSPYAAAFSVNRPPFNDVSAPFVDSDEPAYGVPPNPVHYPVHPRSYGYDFF 72
YSP P + SP + ++S P ++ S P P+Y P +P + P P +
Sbjct: 1678 YSPTSP--SYSPTSPSYSPTSPSYSPTS-PSYSPTSPSYS-PTSPSYSPTSP-----SYS 1728
Query: 73 PESDSVSKPY-GYSGLASEDSFWYDQWPPTSSKPSLAEPQPCFPDLNSMGLASEDSFGYE 131
P S S S YS + S + PTS PS + P + + + ++
Sbjct: 1729 PTSPSYSPTSPSYSPTSPNYSPTSPNYTPTS--PSYSPTSPSYSPTSPNYTPTSPNYSPT 1786
Query: 132 QWLSASSKPSLGEAQPYFPSYIPS----TIPSPTSSVAAPIHWSSSSGFAP 178
S S P+ P PSY PS T SPT + ++P + SS ++P
Sbjct: 1787 ---SPSYSPTSPSYSPTSPSYSPSSPRYTPQSPTYTPSSPSYSPSSPSYSP 1834
Database: nr
Posted date: Jul 5, 2005 12:34 AM
Number of letters in database: 863,360,394
Number of sequences in database: 2,540,612
Lambda K H
0.312 0.132 0.413
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 528,282,271
Number of Sequences: 2540612
Number of extensions: 25656800
Number of successful extensions: 66381
Number of sequences better than 10.0: 343
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 341
Number of HSP's that attempted gapping in prelim test: 65484
Number of HSP's gapped (non-prelim): 854
length of query: 258
length of database: 863,360,394
effective HSP length: 125
effective length of query: 133
effective length of database: 545,783,894
effective search space: 72589257902
effective search space used: 72589257902
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 74 (33.1 bits)
Lotus: description of TM0207.8