BLAST2 result
BLASTP 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TM0206b.6
(90 letters)
Database: nr
2,540,612 sequences; 863,360,394 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAP53150.1| putative transposase protein [Oryza sativa (japon... 103 8e-22
emb|CAD40478.2| OSJNBa0067G20.9 [Oryza sativa (japonica cultivar... 99 3e-20
emb|CAE01943.2| OSJNBa0073L13.5 [Oryza sativa (japonica cultivar... 97 8e-20
gb|AAV44159.1| unknown protein [Oryza sativa (japonica cultivar-... 91 9e-18
gb|AAX96683.1| transposon protein, putative, CACTA, En/Spm sub-c... 91 9e-18
gb|AAX95010.1| transposon protein, putative, CACTA, En/Spm sub-c... 87 1e-16
gb|AAP53613.1| putative transposase [Oryza sativa (japonica cult... 87 1e-16
gb|AAP53730.1| contains similarity to retrotransposable elements... 86 2e-16
ref|XP_471600.1| OSJNBb0096E05.3 [Oryza sativa (japonica cultiva... 86 2e-16
gb|AAP52758.1| putative transposase [Oryza sativa (japonica cult... 86 2e-16
gb|AAP52293.1| putative transposable element [Oryza sativa (japo... 86 2e-16
gb|AAX92780.1| transposon protein, putative, CACTA, En/Spm sub-c... 86 3e-16
emb|CAA40555.1| TNP2 [Antirrhinum majus] 85 4e-16
pir||S23818 hypothetical protein Tnp2 - garden snapdragon transp... 85 4e-16
emb|CAD40129.2| OSJNBa0061C06.13 [Oryza sativa (japonica cultiva... 85 5e-16
ref|XP_470753.1| putative transposon protein [Oryza sativa] gi|1... 84 7e-16
gb|AAR96246.1| putative transposase [Oryza sativa (japonica cult... 84 7e-16
gb|AAP52543.1| putative transposase [Oryza sativa (japonica cult... 84 9e-16
gb|AAX95566.1| Transposase family tnp2, putative [Oryza sativa (... 84 9e-16
gb|AAP44620.1| putative transposase [Oryza sativa (japonica cult... 84 9e-16
>gb|AAP53150.1| putative transposase protein [Oryza sativa (japonica
cultivar-group)] gi|37533122|ref|NP_920863.1| putative
transposase protein [Oryza sativa (japonica
cultivar-group)] gi|15187172|gb|AAK91322.1| Putative
transposase protein [Oryza sativa]
Length = 870
Score = 103 bits (258), Expect = 8e-22
Identities = 47/83 (56%), Positives = 66/83 (78%)
Query: 1 LKSHDFHILMEQFLPLAMWGSLPDEVSAVLNELSSFFRQLCGKVLNVKALDKLQHDIVLT 60
LK+HD H+LM+Q +P+A+ G LPDEV++VL +LS++FR +C KVL+V LD+L+ I +T
Sbjct: 459 LKTHDCHVLMQQLMPIALRGILPDEVTSVLFDLSAYFRGICSKVLHVDELDRLEEAIKIT 518
Query: 61 LCHMEMLFPLSFFTVSVHLILSL 83
LC MEM+FP FFTV VHL++ L
Sbjct: 519 LCRMEMIFPPGFFTVMVHLVVHL 541
>emb|CAD40478.2| OSJNBa0067G20.9 [Oryza sativa (japonica cultivar-group)]
gi|50923201|ref|XP_471961.1| OSJNBa0067G20.9 [Oryza
sativa (japonica cultivar-group)]
Length = 815
Score = 98.6 bits (244), Expect = 3e-20
Identities = 44/83 (53%), Positives = 65/83 (78%)
Query: 1 LKSHDFHILMEQFLPLAMWGSLPDEVSAVLNELSSFFRQLCGKVLNVKALDKLQHDIVLT 60
LK+HD H+LM+Q +P+A+ G LPD+V++VL +LS++F+ +C KVL+V LD+L+ I +T
Sbjct: 584 LKTHDCHVLMQQLMPIALRGILPDDVTSVLFDLSAYFQGICSKVLHVDELDRLEEAIQIT 643
Query: 61 LCHMEMLFPLSFFTVSVHLILSL 83
LC MEM+ P FFTV VHL++ L
Sbjct: 644 LCRMEMIIPPRFFTVMVHLVVHL 666
>emb|CAE01943.2| OSJNBa0073L13.5 [Oryza sativa (japonica cultivar-group)]
gi|50921339|ref|XP_471030.1| OSJNBa0073L13.5 [Oryza
sativa (japonica cultivar-group)]
Length = 801
Score = 97.4 bits (241), Expect = 8e-20
Identities = 47/83 (56%), Positives = 60/83 (71%)
Query: 1 LKSHDFHILMEQFLPLAMWGSLPDEVSAVLNELSSFFRQLCGKVLNVKALDKLQHDIVLT 60
LKSHD+HIL++Q LP+A+ G LPD V++VL EL +FR+L KVL + L KL I +T
Sbjct: 663 LKSHDYHILIQQLLPVALRGVLPDNVTSVLFELCGYFRELSAKVLYIDVLRKLDEQIKMT 722
Query: 61 LCHMEMLFPLSFFTVSVHLILSL 83
LC MEM+FP FFTV VHL+ L
Sbjct: 723 LCRMEMIFPPRFFTVMVHLVAHL 745
>gb|AAV44159.1| unknown protein [Oryza sativa (japonica cultivar-group)]
Length = 1516
Score = 90.5 bits (223), Expect = 9e-18
Identities = 43/84 (51%), Positives = 61/84 (72%), Gaps = 1/84 (1%)
Query: 1 LKSHDFHILMEQFLPLAMWGSLPD-EVSAVLNELSSFFRQLCGKVLNVKALDKLQHDIVL 59
LKSHD H+L+E LP+A+ P +V ++NEL+ FF++LC KV++V LD+LQ IV+
Sbjct: 461 LKSHDCHVLLEDILPIALRSCYPSKDVMHIVNELARFFKKLCSKVIDVSELDELQRSIVM 520
Query: 60 TLCHMEMLFPLSFFTVSVHLILSL 83
TLC ME +F SFFT+ VHL++ L
Sbjct: 521 TLCDMERVFLPSFFTIMVHLLVHL 544
>gb|AAX96683.1| transposon protein, putative, CACTA, En/Spm sub-class [Oryza sativa
(japonica cultivar-group)]
Length = 1305
Score = 90.5 bits (223), Expect = 9e-18
Identities = 43/84 (51%), Positives = 61/84 (72%), Gaps = 1/84 (1%)
Query: 1 LKSHDFHILMEQFLPLAMWGSLPD-EVSAVLNELSSFFRQLCGKVLNVKALDKLQHDIVL 59
LKSHD H+L+E LP+A+ P +V ++NEL+ FF++LC KV++V LD+LQ IV+
Sbjct: 868 LKSHDCHVLLEDILPIALRSCYPSKDVMHIVNELARFFKKLCSKVIDVSELDELQRSIVM 927
Query: 60 TLCHMEMLFPLSFFTVSVHLILSL 83
TLC ME +F SFFT+ VHL++ L
Sbjct: 928 TLCDMERVFLPSFFTIMVHLLVHL 951
>gb|AAX95010.1| transposon protein, putative, CACTA, En/Spm sub-class [Oryza sativa
(japonica cultivar-group)]
Length = 822
Score = 87.0 bits (214), Expect = 1e-16
Identities = 42/83 (50%), Positives = 58/83 (69%)
Query: 1 LKSHDFHILMEQFLPLAMWGSLPDEVSAVLNELSSFFRQLCGKVLNVKALDKLQHDIVLT 60
+KSHD H+L+ Q LP+A+ G LP +V ++ L +FF + KV++ K LD LQ DI+ T
Sbjct: 403 MKSHDCHVLITQILPVAIRGILPPKVRNMIQRLCAFFNAIRQKVIDPKDLDGLQTDIINT 462
Query: 61 LCHMEMLFPLSFFTVSVHLILSL 83
LCH+EM FPLSFF + VHL + L
Sbjct: 463 LCHLEMFFPLSFFDIIVHLPVHL 485
>gb|AAP53613.1| putative transposase [Oryza sativa (japonica cultivar-group)]
gi|37534048|ref|NP_921326.1| putative transposase [Oryza
sativa (japonica cultivar-group)]
gi|19881737|gb|AAM01138.1| Putative transposase [Oryza
sativa (japonica cultivar-group)]
Length = 997
Score = 86.7 bits (213), Expect = 1e-16
Identities = 42/79 (53%), Positives = 55/79 (69%)
Query: 1 LKSHDFHILMEQFLPLAMWGSLPDEVSAVLNELSSFFRQLCGKVLNVKALDKLQHDIVLT 60
+KSHD H+L+ Q LP+A+ G LP +V + L SFF + KV++ + LD LQ DIV T
Sbjct: 588 MKSHDCHVLITQILPVAIRGILPPKVRHTIQRLCSFFNAIGQKVIDPEDLDGLQTDIVNT 647
Query: 61 LCHMEMLFPLSFFTVSVHL 79
LCH+EM FPLSFF + VHL
Sbjct: 648 LCHLEMFFPLSFFDIMVHL 666
>gb|AAP53730.1| contains similarity to retrotransposable elements TNP2 [Oryza
sativa (japonica cultivar-group)]
gi|37534282|ref|NP_921443.1| contains similarity to
retrotransposable elements TNP2 [Oryza sativa (japonica
cultivar-group)]
Length = 1005
Score = 86.3 bits (212), Expect = 2e-16
Identities = 42/83 (50%), Positives = 57/83 (68%)
Query: 1 LKSHDFHILMEQFLPLAMWGSLPDEVSAVLNELSSFFRQLCGKVLNVKALDKLQHDIVLT 60
+KSHD H+L+ Q LP+A+ G LP +V + L +FF + KV++ + LD LQ DIV T
Sbjct: 586 MKSHDCHVLITQILPVAIRGILPPKVHHTIQRLCAFFNAIGQKVIDPEDLDGLQTDIVNT 645
Query: 61 LCHMEMLFPLSFFTVSVHLILSL 83
LCH+EM FPLSFF + VHL + L
Sbjct: 646 LCHLEMFFPLSFFNIMVHLPVHL 668
>ref|XP_471600.1| OSJNBb0096E05.3 [Oryza sativa (japonica cultivar-group)]
gi|38344681|emb|CAD40254.2| OSJNBb0096E05.3 [Oryza
sativa (japonica cultivar-group)]
Length = 897
Score = 86.3 bits (212), Expect = 2e-16
Identities = 42/83 (50%), Positives = 57/83 (68%)
Query: 1 LKSHDFHILMEQFLPLAMWGSLPDEVSAVLNELSSFFRQLCGKVLNVKALDKLQHDIVLT 60
+KSHD H+L+ Q LP+A+ G LP +V + L +FF + KV++ + LD LQ DIV T
Sbjct: 478 MKSHDCHVLITQILPVAIRGILPPKVRHTIQRLCAFFNAIGQKVIDPEDLDGLQTDIVNT 537
Query: 61 LCHMEMLFPLSFFTVSVHLILSL 83
LCH+EM FPLSFF + VHL + L
Sbjct: 538 LCHLEMFFPLSFFDIMVHLSVHL 560
>gb|AAP52758.1| putative transposase [Oryza sativa (japonica cultivar-group)]
gi|37532338|ref|NP_920471.1| putative transposase [Oryza
sativa (japonica cultivar-group)]
gi|20270075|gb|AAM18163.1| Putative transposase [Oryza
sativa (japonica cultivar-group)]
Length = 499
Score = 85.9 bits (211), Expect = 2e-16
Identities = 42/83 (50%), Positives = 57/83 (68%)
Query: 1 LKSHDFHILMEQFLPLAMWGSLPDEVSAVLNELSSFFRQLCGKVLNVKALDKLQHDIVLT 60
+KSHD H+L+ Q LP+A+ G LP +V + L +FF + KV++ + LD LQ DIV T
Sbjct: 190 MKSHDCHVLITQILPVAIRGILPPKVRHTIQRLCAFFNAIGQKVIDPEDLDGLQTDIVNT 249
Query: 61 LCHMEMLFPLSFFTVSVHLILSL 83
LCH+EM FPLSFF + VHL + L
Sbjct: 250 LCHLEMFFPLSFFDIMVHLPVHL 272
>gb|AAP52293.1| putative transposable element [Oryza sativa (japonica
cultivar-group)] gi|37531408|ref|NP_920006.1| putative
transposable element [Oryza sativa (japonica
cultivar-group)] gi|22655757|gb|AAN04174.1| Putative
transposable element [Oryza sativa (japonica
cultivar-group)] gi|21672010|gb|AAM74372.1| Putative
transposable element [Oryza sativa (japonica
cultivar-group)]
Length = 992
Score = 85.9 bits (211), Expect = 2e-16
Identities = 40/83 (48%), Positives = 59/83 (70%)
Query: 1 LKSHDFHILMEQFLPLAMWGSLPDEVSAVLNELSSFFRQLCGKVLNVKALDKLQHDIVLT 60
LKSHDFHI +E+ LP+A+ G +P++ L+ELS F+RQLC K ++ + + +L+ +IV+
Sbjct: 556 LKSHDFHIFIERLLPVALRGFIPEKEWKDLSELSFFYRQLCAKEIDKEQMHRLEKEIVVL 615
Query: 61 LCHMEMLFPLSFFTVSVHLILSL 83
LC +E +FPL FF HLIL L
Sbjct: 616 LCKLEKMFPLGFFNSMQHLILHL 638
>gb|AAX92780.1| transposon protein, putative, CACTA, En/Spm sub-class [Oryza sativa
(japonica cultivar-group)]
Length = 943
Score = 85.5 bits (210), Expect = 3e-16
Identities = 42/83 (50%), Positives = 56/83 (66%)
Query: 1 LKSHDFHILMEQFLPLAMWGSLPDEVSAVLNELSSFFRQLCGKVLNVKALDKLQHDIVLT 60
+KSHD H+L+ Q LP+A+ G LP +V + L +FF KV++ + LD LQ DIV T
Sbjct: 586 MKSHDCHVLITQILPVAIRGILPPKVRHTIQRLCAFFNAFGQKVIDPEDLDGLQTDIVKT 645
Query: 61 LCHMEMLFPLSFFTVSVHLILSL 83
LCH+EM FPLSFF + VHL + L
Sbjct: 646 LCHLEMFFPLSFFDIMVHLPVHL 668
>emb|CAA40555.1| TNP2 [Antirrhinum majus]
Length = 752
Score = 85.1 bits (209), Expect = 4e-16
Identities = 42/85 (49%), Positives = 57/85 (66%)
Query: 1 LKSHDFHILMEQFLPLAMWGSLPDEVSAVLNELSSFFRQLCGKVLNVKALDKLQHDIVLT 60
LKSHD HILM+Q LP+A+ LP V L +L +FFR+LC KVLN + L ++ DI T
Sbjct: 650 LKSHDHHILMQQLLPIALRKVLPKHVRTPLIKLCTFFRELCSKVLNPQDLVRMGKDIAKT 709
Query: 61 LCHMEMLFPLSFFTVSVHLILSLFF 85
LC +E +FP SFF + +HL + L +
Sbjct: 710 LCDLEKIFPPSFFDIMMHLPIHLAY 734
>pir||S23818 hypothetical protein Tnp2 - garden snapdragon transposable element
Tam1
Length = 752
Score = 85.1 bits (209), Expect = 4e-16
Identities = 42/85 (49%), Positives = 57/85 (66%)
Query: 1 LKSHDFHILMEQFLPLAMWGSLPDEVSAVLNELSSFFRQLCGKVLNVKALDKLQHDIVLT 60
LKSHD HILM+Q LP+A+ LP V L +L +FFR+LC KVLN + L ++ DI T
Sbjct: 650 LKSHDHHILMQQLLPIALRKVLPKHVRTPLIKLCTFFRELCSKVLNPQDLVRMGKDIAKT 709
Query: 61 LCHMEMLFPLSFFTVSVHLILSLFF 85
LC +E +FP SFF + +HL + L +
Sbjct: 710 LCDLEKIFPPSFFDIMMHLPIHLAY 734
>emb|CAD40129.2| OSJNBa0061C06.13 [Oryza sativa (japonica cultivar-group)]
Length = 551
Score = 84.7 bits (208), Expect = 5e-16
Identities = 41/83 (49%), Positives = 57/83 (68%)
Query: 1 LKSHDFHILMEQFLPLAMWGSLPDEVSAVLNELSSFFRQLCGKVLNVKALDKLQHDIVLT 60
+KSHD H+L+ Q LP+A+ G LP +V + L +FF+ + KV++ + LD LQ D V T
Sbjct: 353 MKSHDCHVLITQILPVAIRGILPPKVRHTIQHLCAFFKAIGQKVIDPEDLDGLQTDTVNT 412
Query: 61 LCHMEMLFPLSFFTVSVHLILSL 83
LCH+EM FPLSFF + VHL + L
Sbjct: 413 LCHLEMFFPLSFFDIMVHLPVHL 435
>ref|XP_470753.1| putative transposon protein [Oryza sativa]
gi|18071381|gb|AAL58240.1| putative transposon protein
[Oryza sativa]
Length = 865
Score = 84.3 bits (207), Expect = 7e-16
Identities = 41/83 (49%), Positives = 56/83 (67%)
Query: 1 LKSHDFHILMEQFLPLAMWGSLPDEVSAVLNELSSFFRQLCGKVLNVKALDKLQHDIVLT 60
LKSHD HIL+++ L + M G L ++ VL +L SFFRQLC K L + L+KL+ IV+
Sbjct: 542 LKSHDLHILLQRILLIGMRGFLHEDFYQVLLQLGSFFRQLCSKTLKLDVLEKLEKQIVIV 601
Query: 61 LCHMEMLFPLSFFTVSVHLILSL 83
LC +EM+ P +FF V VHL + L
Sbjct: 602 LCKLEMILPPAFFDVIVHLAVHL 624
>gb|AAR96246.1| putative transposase [Oryza sativa (japonica cultivar-group)]
Length = 702
Score = 84.3 bits (207), Expect = 7e-16
Identities = 41/83 (49%), Positives = 56/83 (67%)
Query: 1 LKSHDFHILMEQFLPLAMWGSLPDEVSAVLNELSSFFRQLCGKVLNVKALDKLQHDIVLT 60
LKSHD HIL+++ L + M G L ++ VL +L SFFRQLC K L + L+KL+ IV+
Sbjct: 418 LKSHDLHILLQRILLIGMRGFLHEDFYQVLLQLGSFFRQLCSKTLKLDVLEKLEKQIVIV 477
Query: 61 LCHMEMLFPLSFFTVSVHLILSL 83
LC +EM+ P +FF V VHL + L
Sbjct: 478 LCKLEMILPPAFFDVIVHLAVHL 500
>gb|AAP52543.1| putative transposase [Oryza sativa (japonica cultivar-group)]
gi|37531908|ref|NP_920256.1| putative transposase [Oryza
sativa (japonica cultivar-group)]
Length = 776
Score = 84.0 bits (206), Expect = 9e-16
Identities = 36/83 (43%), Positives = 59/83 (70%)
Query: 1 LKSHDFHILMEQFLPLAMWGSLPDEVSAVLNELSSFFRQLCGKVLNVKALDKLQHDIVLT 60
LK+HD HIL+++ +P A+ G +P +++ L EL +FF+QLC K LN+ L++L+ ++ +
Sbjct: 552 LKTHDCHILLQRIIPAAVRGIMPKDINEALAELGNFFQQLCAKTLNLDVLERLKANVPII 611
Query: 61 LCHMEMLFPLSFFTVSVHLILSL 83
LC +E +FP SFF V +HL + L
Sbjct: 612 LCKLEKIFPPSFFDVMLHLAVHL 634
>gb|AAX95566.1| Transposase family tnp2, putative [Oryza sativa (japonica
cultivar-group)]
Length = 1114
Score = 84.0 bits (206), Expect = 9e-16
Identities = 36/83 (43%), Positives = 59/83 (70%)
Query: 1 LKSHDFHILMEQFLPLAMWGSLPDEVSAVLNELSSFFRQLCGKVLNVKALDKLQHDIVLT 60
LK+HD HIL+++ +P A+ G +P +++ L EL +FF+QLC K LN+ L++L+ ++ +
Sbjct: 663 LKTHDCHILLQRIIPAAVRGIMPKDINEALAELGNFFQQLCAKTLNLDVLERLKANVPII 722
Query: 61 LCHMEMLFPLSFFTVSVHLILSL 83
LC +E +FP SFF V +HL + L
Sbjct: 723 LCKLEKIFPPSFFDVMLHLAVHL 745
>gb|AAP44620.1| putative transposase [Oryza sativa (japonica cultivar-group)]
gi|50916617|ref|XP_468705.1| putative transposase [Oryza
sativa (japonica cultivar-group)]
Length = 884
Score = 84.0 bits (206), Expect = 9e-16
Identities = 41/83 (49%), Positives = 57/83 (68%)
Query: 1 LKSHDFHILMEQFLPLAMWGSLPDEVSAVLNELSSFFRQLCGKVLNVKALDKLQHDIVLT 60
+KSH+ H+L+ Q LP+A+ G LP +V + L +FF + KV++ + LD LQ DIV T
Sbjct: 533 MKSHNCHVLITQILPVAIRGILPPKVRHTIQRLCAFFNAIGQKVIDPEDLDGLQTDIVNT 592
Query: 61 LCHMEMLFPLSFFTVSVHLILSL 83
LCH+EM FPLSFF + VHL + L
Sbjct: 593 LCHLEMFFPLSFFDIMVHLPVHL 615
Database: nr
Posted date: Jul 5, 2005 12:34 AM
Number of letters in database: 863,360,394
Number of sequences in database: 2,540,612
Lambda K H
0.333 0.145 0.453
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 139,382,349
Number of Sequences: 2540612
Number of extensions: 4160899
Number of successful extensions: 18848
Number of sequences better than 10.0: 371
Number of HSP's better than 10.0 without gapping: 368
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 18466
Number of HSP's gapped (non-prelim): 379
length of query: 90
length of database: 863,360,394
effective HSP length: 66
effective length of query: 24
effective length of database: 695,680,002
effective search space: 16696320048
effective search space used: 16696320048
T: 11
A: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 39 (21.5 bits)
S2: 68 (30.8 bits)
Lotus: description of TM0206b.6