BLAST2 result
BLASTP 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TM0206b.5
(199 letters)
Database: nr
2,540,612 sequences; 863,360,394 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pir||S23818 hypothetical protein Tnp2 - garden snapdragon transp... 146 3e-34
emb|CAA40555.1| TNP2 [Antirrhinum majus] 146 4e-34
gb|AAV44159.1| unknown protein [Oryza sativa (japonica cultivar-... 112 5e-24
gb|AAV43868.1| unknown protein [Oryza sativa (japonica cultivar-... 112 5e-24
pir||F86459 probable En/Spm-like transposon protein [imported] -... 101 1e-20
emb|CAE02501.2| OSJNBa0072D08.15 [Oryza sativa (japonica cultiva... 95 1e-18
emb|CAD40478.2| OSJNBa0067G20.9 [Oryza sativa (japonica cultivar... 94 2e-18
emb|CAE04684.1| OSJNBb0018A10.13 [Oryza sativa (japonica cultiva... 94 3e-18
gb|AAT77012.1| putative Transposase family tnp2 protein [Oryza s... 94 3e-18
emb|CAD39290.2| OSJNBa0073L13.7 [Oryza sativa (japonica cultivar... 92 6e-18
ref|XP_474883.1| OSJNBa0021F22.10 [Oryza sativa (japonica cultiv... 92 8e-18
ref|XP_471076.1| OSJNBb0089K24.2 [Oryza sativa (japonica cultiva... 92 8e-18
ref|XP_470998.1| OSJNBa0027H06.6 [Oryza sativa (japonica cultiva... 92 8e-18
ref|NP_915890.1| putative retrotransposable elements TNP2 [Oryza... 92 8e-18
emb|CAE03273.1| OSJNBa0011J08.28 [Oryza sativa (japonica cultiva... 92 8e-18
emb|CAD40845.3| OSJNBa0086B14.16 [Oryza sativa (japonica cultiva... 92 8e-18
ref|NP_908364.1| putative retrotransposable elements TNP2 protei... 92 8e-18
gb|AAV32149.1| putative polyprotein [Oryza sativa (japonica cult... 92 8e-18
gb|AAX96209.1| transposon protein, putative, CACTA, En/Spm sub-c... 92 8e-18
gb|AAX95206.1| transposon protein, putative, CACTA, En/Spm sub-c... 92 8e-18
>pir||S23818 hypothetical protein Tnp2 - garden snapdragon transposable element
Tam1
Length = 752
Score = 146 bits (369), Expect = 3e-34
Identities = 79/200 (39%), Positives = 112/200 (55%), Gaps = 17/200 (8%)
Query: 1 LYLKAMDKSWIEMPRNTMAYEEGVKRFIDFAFERSSIEGKIICPCPRCEFRKRQTRDEVY 60
+Y MDKSW+ R T YE G+ +F+DFAF+ + GKIICPC +C+ R+
Sbjct: 1 MYSFTMDKSWMHKSRLTEEYENGLDQFLDFAFDNVCLNGKIICPCKQCKNALWMDRETAK 60
Query: 61 DHLICKQLPKGYTFWFDHGETMNNSPQNVPNSVEQTMVDEDPIQNMINGAFGVD---MHH 117
+HLI KGYT W HGE +NS N+ N T D + N+++ AFGV+ ++
Sbjct: 61 EHLIIDGFIKGYTHWVIHGEGSSNSQNNIQNERLNTFED---MHNLVHDAFGVEDDNINS 117
Query: 118 GEESNEDVPDGEGVIPDATQERHETRDFYDLARDGEQPLYEGCTKYSKLSFLVKLYHIKT 177
EE NE+ E E + FY L D +Q LY GC +S+L F+V+L+H+K
Sbjct: 118 EEEPNEEEEPNE-----------EAKTFYKLLDDAQQELYPGCKDFSRLRFIVRLFHLKC 166
Query: 178 LCGVTDKAMTMILELLHDAF 197
L ++K TM+LELL +AF
Sbjct: 167 LGKWSNKTFTMLLELLKEAF 186
>emb|CAA40555.1| TNP2 [Antirrhinum majus]
Length = 752
Score = 146 bits (368), Expect = 4e-34
Identities = 79/200 (39%), Positives = 112/200 (55%), Gaps = 17/200 (8%)
Query: 1 LYLKAMDKSWIEMPRNTMAYEEGVKRFIDFAFERSSIEGKIICPCPRCEFRKRQTRDEVY 60
+Y MDKSW+ R T YE G+ +F+DFAF+ + GKIICPC +C+ R+
Sbjct: 1 VYSFTMDKSWMHKSRLTEEYENGLDQFLDFAFDNVCLNGKIICPCKQCKNALWMDRETAK 60
Query: 61 DHLICKQLPKGYTFWFDHGETMNNSPQNVPNSVEQTMVDEDPIQNMINGAFGVD---MHH 117
+HLI KGYT W HGE +NS N+ N T D + N+++ AFGV+ ++
Sbjct: 61 EHLIIDGFIKGYTHWVIHGEGSSNSQNNIQNERLNTFED---MHNLVHDAFGVEDDNINS 117
Query: 118 GEESNEDVPDGEGVIPDATQERHETRDFYDLARDGEQPLYEGCTKYSKLSFLVKLYHIKT 177
EE NE+ E E + FY L D +Q LY GC +S+L F+V+L+H+K
Sbjct: 118 EEEPNEEEEPNE-----------EAKTFYKLLDDAQQELYPGCKDFSRLRFIVRLFHLKC 166
Query: 178 LCGVTDKAMTMILELLHDAF 197
L ++K TM+LELL +AF
Sbjct: 167 LGKWSNKTFTMLLELLKEAF 186
>gb|AAV44159.1| unknown protein [Oryza sativa (japonica cultivar-group)]
Length = 1516
Score = 112 bits (281), Expect = 5e-24
Identities = 69/225 (30%), Positives = 109/225 (47%), Gaps = 35/225 (15%)
Query: 6 MDKSWIEMPRNTMAYEEGVKRFIDFAFERSSIEGKIICPCPRCEFRKRQTRDEVYDHLIC 65
MD+ W+ PR + +Y++GV F+ AF + K++CPC C R Q D V HL C
Sbjct: 1 MDRDWMSEPRTSASYKDGVAHFLSIAFRDVPDDAKVLCPCVNCRNRITQNYDRVKTHLRC 60
Query: 66 KQLPKGYTFWFDHGE----------TMNNSPQNVP-------NSVEQTMVDEDPIQNMIN 108
+ + YT W HGE ++ +P+N+P N VE D ++ ++N
Sbjct: 61 AGILQSYTKWIHHGEKYDAPSLVFAPVSGNPRNIPISGAHKSNVVEVGDGRSDNMEGLLN 120
Query: 109 GAFGVDMHHGEESNEDVPDGEGVI-------PDATQERHETRD----------FYDLARD 151
AFG + S+ + D +G+ P+ ++ + T F L +D
Sbjct: 121 TAFGREDSFESISSASI-DDDGIYFESSYAEPNMVEDENNTFGDCHNGGEQDMFTRLLKD 179
Query: 152 GEQPLYEGCTKYSKLSFLVKLYHIKTLCGVTDKAMTMILELLHDA 196
+ LY GC K+S+LSFLV LY++K + G T ++ T +L L DA
Sbjct: 180 AKTKLYHGCDKFSRLSFLVNLYNLKCIHGWTQESFTALLGLQSDA 224
>gb|AAV43868.1| unknown protein [Oryza sativa (japonica cultivar-group)]
Length = 1559
Score = 112 bits (281), Expect = 5e-24
Identities = 69/225 (30%), Positives = 109/225 (47%), Gaps = 35/225 (15%)
Query: 6 MDKSWIEMPRNTMAYEEGVKRFIDFAFERSSIEGKIICPCPRCEFRKRQTRDEVYDHLIC 65
MD+ W+ PR + +Y++GV F+ AF + K++CPC C R Q D V HL C
Sbjct: 1 MDRDWMSEPRTSASYKDGVAHFLSIAFRDVPDDAKVLCPCVNCRNRITQNYDRVKTHLRC 60
Query: 66 KQLPKGYTFWFDHGE----------TMNNSPQNVP-------NSVEQTMVDEDPIQNMIN 108
+ + YT W HGE ++ +P+N+P N VE D ++ ++N
Sbjct: 61 AGILQSYTKWIHHGEKYDAPSLVFAPVSGNPRNIPISGAHKSNVVEVGDGRSDNMEGLLN 120
Query: 109 GAFGVDMHHGEESNEDVPDGEGVI-------PDATQERHETRD----------FYDLARD 151
AFG + S+ + D +G+ P+ ++ + T F L +D
Sbjct: 121 TAFGREDSFESISSASI-DDDGIYFESSYAEPNMVEDENNTFGDCHNGGEQDMFTRLLKD 179
Query: 152 GEQPLYEGCTKYSKLSFLVKLYHIKTLCGVTDKAMTMILELLHDA 196
+ LY GC K+S+LSFLV LY++K + G T ++ T +L L DA
Sbjct: 180 AKTKLYHGCDKFSRLSFLVNLYNLKCIHGWTQESFTALLGLQSDA 224
>pir||F86459 probable En/Spm-like transposon protein [imported] - Arabidopsis
thaliana gi|10998937|gb|AAG26076.1| En/Spm-like
transposon protein, putative [Arabidopsis thaliana]
Length = 428
Score = 101 bits (251), Expect = 1e-20
Identities = 58/193 (30%), Positives = 91/193 (47%), Gaps = 16/193 (8%)
Query: 6 MDKSWIEMPRNTMAYEEGVKRFIDFAFERSSIEGKIICPCPRCEFRKRQTRDEVYDHLIC 65
MDKSW+ +PRN++ YE+G +F+ + R ++ CPC C Q D V +HL+
Sbjct: 11 MDKSWVWLPRNSIEYEKGATKFVYASSRRLGDPSEMFCPCTDCRNLCHQPIDTVLEHLVI 70
Query: 66 KQLPKGYT---FWFDHGETMNNSPQNVPNSVEQTMVDEDPIQNMINGAFGVDMHHGEESN 122
K + Y W HGE + +E E +I A+ H + N
Sbjct: 71 KGMNHKYKRNGCWSKHGEIR-------ADKLEAESSSEFGAYELIRTAYFDGEDHSDSQN 123
Query: 123 EDVPDGEGVIPDATQERHETRDFYDLARDGEQPLYEGCTKYSKLSFLVKLYHIKTLCGVT 182
++ D + E DF + +D E PLY GC KY+K+S +++LY IK G++
Sbjct: 124 QNENDSK------EPSTKEESDFREKLKDAETPLYYGCPKYTKVSAIMRLYRIKVKSGMS 177
Query: 183 DKAMTMILELLHD 195
+ +L L+HD
Sbjct: 178 ENYFDQLLSLVHD 190
>emb|CAE02501.2| OSJNBa0072D08.15 [Oryza sativa (japonica cultivar-group)]
gi|50922189|ref|XP_471455.1| OSJNBa0072D08.15 [Oryza
sativa (japonica cultivar-group)]
Length = 1100
Score = 94.7 bits (234), Expect = 1e-18
Identities = 67/204 (32%), Positives = 104/204 (50%), Gaps = 18/204 (8%)
Query: 3 LKAMDKSWIEMP-RNTMAYEEGVKRFIDFAFE--RSSIEGKIICPCPRCEFRKR-QTRDE 58
++AMD+ W+ R++ Y EGV F+ FA +S + ++CPC C+ + + +DE
Sbjct: 75 MEAMDRRWMYYAHRSSTEYREGVTEFVTFADNDRKSRMSMHMLCPCRDCKNEQMIEDKDE 134
Query: 59 VYDHLICKQLPKGYTFWFDHGETMNNSPQNVPNSVEQTMVDEDPIQNMI---NGAFGVDM 115
V+ HLI K YT W HGE Q P+ + ++D+D ++N G F
Sbjct: 135 VHAHLIMNGFMKKYTCWTKHGE------QEAPDVAAEEVLDQD-VENTAAAREGMFVPSP 187
Query: 116 HHGEESNEDVPDGEGVIPDATQERHETRD---FYDLARDGEQPLYEGC-TKYSKLSFLVK 171
GE + D ++ D RD F L D + PLY+GC +K+SKLS +++
Sbjct: 188 LGGETIDLDTQCLSTMLHDIEDAEDNDRDYEKFSKLVEDCQMPLYDGCKSKHSKLSCVLE 247
Query: 172 LYHIKTLCGVTDKAMTMILELLHD 195
L +K G +DK+ T +LELL D
Sbjct: 248 LMKLKASNGWSDKSFTELLELLKD 271
>emb|CAD40478.2| OSJNBa0067G20.9 [Oryza sativa (japonica cultivar-group)]
gi|50923201|ref|XP_471961.1| OSJNBa0067G20.9 [Oryza
sativa (japonica cultivar-group)]
Length = 815
Score = 94.0 bits (232), Expect = 2e-18
Identities = 62/197 (31%), Positives = 97/197 (48%), Gaps = 22/197 (11%)
Query: 8 KSWIEMPRNTMAYEEGVKRFIDFAFERSSIEGKIICPCPRCEFRKRQTRDEVYDHLICKQ 67
K + PR + Y GV F++FA++ S + KI CPC C ++++VYD L+C
Sbjct: 7 KILLRYPRGSDEYLAGVHGFLEFAYKDKSEDTKIYCPCETCVHTMLLSKNDVYDRLVCNG 66
Query: 68 LPKGYTFWFDHGE-----TMNNSPQNVPNSVEQTMVDEDPIQNMINGAFGVDMHHGEESN 122
+ + Y W HGE T N PQ ++ M +IN AF
Sbjct: 67 MLQSYDQWDFHGESSEEQTRNQQPQPHNENMRANM------HELINDAF-------RTVY 113
Query: 123 EDVPDGEGVIPDATQ---ERHETRDFYDLARDGEQPLYEGCTKYSKLSFLVKLYHIKTLC 179
+DVP + T E + FY L +D E+PL++GC + S LS LV L+++K++
Sbjct: 114 DDVPMSDHADSPCTHTDGPNLEAQAFYKLVKDSEKPLWDGC-ELSHLSLLVLLFNMKSMN 172
Query: 180 GVTDKAMTMILELLHDA 196
+DK+ +L++LH A
Sbjct: 173 KWSDKSFGDLLDILHMA 189
>emb|CAE04684.1| OSJNBb0018A10.13 [Oryza sativa (japonica cultivar-group)]
gi|50922687|ref|XP_471704.1| OSJNBb0018A10.13 [Oryza
sativa (japonica cultivar-group)]
Length = 473
Score = 93.6 bits (231), Expect = 3e-18
Identities = 66/201 (32%), Positives = 102/201 (49%), Gaps = 18/201 (8%)
Query: 6 MDKSWIEMP-RNTMAYEEGVKRFIDFAFE--RSSIEGKIICPCPRCEFRKR-QTRDEVYD 61
MD+ W+ R++ Y EGV F+ FA +S + ++CPC C+ + + +DEV+
Sbjct: 1 MDRRWMYYAHRSSTEYREGVTEFVTFADNDRKSRMSMHMLCPCRDCKNEQMIEDKDEVHA 60
Query: 62 HLICKQLPKGYTFWFDHGETMNNSPQNVPNSVEQTMVDEDPIQNMI---NGAFGVDMHHG 118
HLI K YT W HGE Q P+ + ++D+D ++N + G F G
Sbjct: 61 HLIMNGFMKKYTCWTKHGE------QEAPDVAAEEVLDQD-VENTVAAREGMFVPSPLGG 113
Query: 119 EESNEDVPDGEGVIPDATQERHETRD---FYDLARDGEQPLYEGC-TKYSKLSFLVKLYH 174
E + D ++ D RD F L D + PLY+GC +K+SKLS +++L
Sbjct: 114 ETIDLDTQCLSTMLHDIEDAEDNDRDYEKFSKLVEDCQMPLYDGCKSKHSKLSCVLELMK 173
Query: 175 IKTLCGVTDKAMTMILELLHD 195
+K G +DK+ T +LELL D
Sbjct: 174 LKASNGWSDKSFTELLELLKD 194
>gb|AAT77012.1| putative Transposase family tnp2 protein [Oryza sativa (japonica
cultivar-group)]
Length = 1095
Score = 93.6 bits (231), Expect = 3e-18
Identities = 67/201 (33%), Positives = 102/201 (50%), Gaps = 18/201 (8%)
Query: 6 MDKSWIEMP-RNTMAYEEGVKRFIDFAFE--RSSIEGKIICPCPRCEFRKR-QTRDEVYD 61
MD+ W+ R++ Y EGV F+ FA +S + ++CPC C+ + + +DEV+
Sbjct: 1 MDRRWMYYAHRSSTEYREGVTEFVTFADNDRKSRMSMHMLCPCRDCKNEQMIEDKDEVHA 60
Query: 62 HLICKQLPKGYTFWFDHGETMNNSPQNVPNSVEQTMVDEDPIQNMI---NGAFGVDMHHG 118
HLI K YT W HGE Q VP+ + ++D+D ++N G F G
Sbjct: 61 HLIMNGFMKKYTCWTKHGE------QEVPDVAAEEVLDQD-VENTAAAREGMFVPSPLGG 113
Query: 119 EESNEDVPDGEGVIPDATQERHETRD---FYDLARDGEQPLYEGC-TKYSKLSFLVKLYH 174
E + D ++ D RD F L D + PLY+GC +K+SKLS +++L
Sbjct: 114 ETIDLDTQCLSTMLHDIEDAEDNDRDYEKFSKLVEDCQMPLYDGCKSKHSKLSCVLELMK 173
Query: 175 IKTLCGVTDKAMTMILELLHD 195
+K G +DK+ T +LELL D
Sbjct: 174 LKASNGWSDKSFTELLELLKD 194
>emb|CAD39290.2| OSJNBa0073L13.7 [Oryza sativa (japonica cultivar-group)]
gi|50921343|ref|XP_471032.1| OSJNBa0073L13.7 [Oryza
sativa (japonica cultivar-group)]
Length = 409
Score = 92.4 bits (228), Expect = 6e-18
Identities = 66/201 (32%), Positives = 101/201 (49%), Gaps = 18/201 (8%)
Query: 6 MDKSWIEMP-RNTMAYEEGVKRFIDFAFE--RSSIEGKIICPCPRCEFRKR-QTRDEVYD 61
MD+ WI R++ Y EGV F+ FA +S + ++CPC C+ + + +DEV+
Sbjct: 1 MDRRWIYYAHRSSTEYREGVTEFVTFADNDRKSRMSMHMLCPCRDCKNEQMIEDKDEVHA 60
Query: 62 HLICKQLPKGYTFWFDHGETMNNSPQNVPNSVEQTMVDEDPIQNMI---NGAFGVDMHHG 118
HLI K YT W HGE Q P+ + ++D+D ++N G F G
Sbjct: 61 HLIMNGFMKKYTCWTKHGE------QEAPDVAAEEVLDQD-VENTAAAREGMFVPSALGG 113
Query: 119 EESNEDVPDGEGVIPDATQERHETRD---FYDLARDGEQPLYEGC-TKYSKLSFLVKLYH 174
E + D ++ D RD F L D + PLY+GC +K+S+LS +++L
Sbjct: 114 ETIDLDTQCLSTMLHDIEDAEDNDRDYEKFSKLVEDCQMPLYDGCKSKHSRLSCVLELMK 173
Query: 175 IKTLCGVTDKAMTMILELLHD 195
+K G +DK+ T +LELL D
Sbjct: 174 LKASNGWSDKSFTELLELLKD 194
>ref|XP_474883.1| OSJNBa0021F22.10 [Oryza sativa (japonica cultivar-group)]
gi|38346477|emb|CAE03716.2| OSJNBa0021F22.10 [Oryza
sativa (japonica cultivar-group)]
Length = 1078
Score = 92.0 bits (227), Expect = 8e-18
Identities = 66/201 (32%), Positives = 101/201 (49%), Gaps = 18/201 (8%)
Query: 6 MDKSWIEMP-RNTMAYEEGVKRFIDFAFE--RSSIEGKIICPCPRCEFRKR-QTRDEVYD 61
MD+ W+ R++ Y EGV F+ FA +S + ++CPC C+ + + +DEV+
Sbjct: 1 MDRRWMYYAHRSSTEYREGVTEFVTFADNDRKSRMSMHMLCPCRDCKNEQMIEDKDEVHA 60
Query: 62 HLICKQLPKGYTFWFDHGETMNNSPQNVPNSVEQTMVDEDPIQNMI---NGAFGVDMHHG 118
HLI K YT W HGE Q P+ + ++D+D ++N G F G
Sbjct: 61 HLIMNGFMKKYTCWTKHGE------QEAPDVAAEEVLDQD-VENTAAAREGMFVPSPLGG 113
Query: 119 EESNEDVPDGEGVIPDATQERHETRD---FYDLARDGEQPLYEGC-TKYSKLSFLVKLYH 174
E + D ++ D RD F L D + PLY+GC +K+SKLS +++L
Sbjct: 114 ETIDLDTQCLSTMLHDIEDAEDNDRDYEKFSKLVEDCQMPLYDGCKSKHSKLSCVLELMK 173
Query: 175 IKTLCGVTDKAMTMILELLHD 195
+K G +DK+ T +LELL D
Sbjct: 174 LKASNGWSDKSFTELLELLKD 194
>ref|XP_471076.1| OSJNBb0089K24.2 [Oryza sativa (japonica cultivar-group)]
gi|21740606|emb|CAD39393.1| OSJNBb0089K24.2 [Oryza
sativa (japonica cultivar-group)]
Length = 1095
Score = 92.0 bits (227), Expect = 8e-18
Identities = 66/201 (32%), Positives = 101/201 (49%), Gaps = 18/201 (8%)
Query: 6 MDKSWIEMP-RNTMAYEEGVKRFIDFAFE--RSSIEGKIICPCPRCEFRKR-QTRDEVYD 61
MD+ W+ R++ Y EGV F+ FA +S + ++CPC C+ + + +DEV+
Sbjct: 1 MDRRWMYYAHRSSTEYREGVTEFVTFADNDRKSRMSMHMLCPCRDCKNEQMIEDKDEVHA 60
Query: 62 HLICKQLPKGYTFWFDHGETMNNSPQNVPNSVEQTMVDEDPIQNMI---NGAFGVDMHHG 118
HLI K YT W HGE Q P+ + ++D+D ++N G F G
Sbjct: 61 HLIMNGFMKKYTCWTKHGE------QEAPDVAAEEVLDQD-VENTAAAREGMFVPSPLGG 113
Query: 119 EESNEDVPDGEGVIPDATQERHETRD---FYDLARDGEQPLYEGC-TKYSKLSFLVKLYH 174
E + D ++ D RD F L D + PLY+GC +K+SKLS +++L
Sbjct: 114 ETIDLDTQCLSTMLHDIEDAEDNDRDYEKFSKLVEDCQMPLYDGCKSKHSKLSCVLELMK 173
Query: 175 IKTLCGVTDKAMTMILELLHD 195
+K G +DK+ T +LELL D
Sbjct: 174 LKASNGWSDKSFTELLELLKD 194
>ref|XP_470998.1| OSJNBa0027H06.6 [Oryza sativa (japonica cultivar-group)]
gi|38345570|emb|CAD39424.2| OSJNBa0027H06.6 [Oryza
sativa (japonica cultivar-group)]
Length = 1023
Score = 92.0 bits (227), Expect = 8e-18
Identities = 66/201 (32%), Positives = 101/201 (49%), Gaps = 18/201 (8%)
Query: 6 MDKSWIEMP-RNTMAYEEGVKRFIDFAFE--RSSIEGKIICPCPRCEFRKR-QTRDEVYD 61
MD+ W+ R++ Y EGV F+ FA +S + ++CPC C+ + + +DEV+
Sbjct: 1 MDRRWMYYAHRSSTEYREGVTEFVTFADNDRKSRMSMHMLCPCRDCKNEQMIEDKDEVHA 60
Query: 62 HLICKQLPKGYTFWFDHGETMNNSPQNVPNSVEQTMVDEDPIQNMI---NGAFGVDMHHG 118
HLI K YT W HGE Q P+ + ++D+D ++N G F G
Sbjct: 61 HLIMNGFMKKYTCWTKHGE------QEAPDVAAEEVLDQD-VENTAAAREGMFVPSPLGG 113
Query: 119 EESNEDVPDGEGVIPDATQERHETRD---FYDLARDGEQPLYEGC-TKYSKLSFLVKLYH 174
E + D ++ D RD F L D + PLY+GC +K+SKLS +++L
Sbjct: 114 ETIDLDTQCLSTMLHDIEDAEDNDRDYEKFSKLVEDCQMPLYDGCKSKHSKLSCVLELMK 173
Query: 175 IKTLCGVTDKAMTMILELLHD 195
+K G +DK+ T +LELL D
Sbjct: 174 LKASNGWSDKSFTELLELLKD 194
>ref|NP_915890.1| putative retrotransposable elements TNP2 [Oryza sativa (japonica
cultivar-group)]
Length = 1095
Score = 92.0 bits (227), Expect = 8e-18
Identities = 66/201 (32%), Positives = 101/201 (49%), Gaps = 18/201 (8%)
Query: 6 MDKSWIEMP-RNTMAYEEGVKRFIDFAFE--RSSIEGKIICPCPRCEFRKR-QTRDEVYD 61
MD+ W+ R++ Y EGV F+ FA +S + ++CPC C+ + + +DEV+
Sbjct: 1 MDRRWMYYAHRSSTEYREGVTEFVTFADNDRKSRMSMHMLCPCRDCKNEQMIEDKDEVHA 60
Query: 62 HLICKQLPKGYTFWFDHGETMNNSPQNVPNSVEQTMVDEDPIQNMI---NGAFGVDMHHG 118
HLI K YT W HGE Q P+ + ++D+D ++N G F G
Sbjct: 61 HLIMNGFMKKYTCWTKHGE------QEAPDVAAEEVLDQD-VENTAAAREGMFVPSPLGG 113
Query: 119 EESNEDVPDGEGVIPDATQERHETRD---FYDLARDGEQPLYEGC-TKYSKLSFLVKLYH 174
E + D ++ D RD F L D + PLY+GC +K+SKLS +++L
Sbjct: 114 ETIDLDTQCLSTMLHDIEDAEDNDRDYEKFSKLVEDCQMPLYDGCKSKHSKLSCVLELMK 173
Query: 175 IKTLCGVTDKAMTMILELLHD 195
+K G +DK+ T +LELL D
Sbjct: 174 LKASNGWSDKSFTELLELLKD 194
>emb|CAE03273.1| OSJNBa0011J08.28 [Oryza sativa (japonica cultivar-group)]
gi|38345863|emb|CAD41160.2| OSJNBa0064M23.5 [Oryza
sativa (japonica cultivar-group)]
gi|50928209|ref|XP_473632.1| OSJNBa0011J08.28 [Oryza
sativa (japonica cultivar-group)]
Length = 1095
Score = 92.0 bits (227), Expect = 8e-18
Identities = 66/201 (32%), Positives = 101/201 (49%), Gaps = 18/201 (8%)
Query: 6 MDKSWIEMP-RNTMAYEEGVKRFIDFAFE--RSSIEGKIICPCPRCEFRKR-QTRDEVYD 61
MD+ W+ R++ Y EGV F+ FA +S + ++CPC C+ + + +DEV+
Sbjct: 1 MDRRWMYYAHRSSTEYREGVTEFVTFADNDRKSRMSMHMLCPCRDCKNEQMIEDKDEVHA 60
Query: 62 HLICKQLPKGYTFWFDHGETMNNSPQNVPNSVEQTMVDEDPIQNMI---NGAFGVDMHHG 118
HLI K YT W HGE Q P+ + ++D+D ++N G F G
Sbjct: 61 HLIMNGFMKKYTCWTKHGE------QEAPDVAAEEVLDQD-VENTAAAREGMFVPSPLGG 113
Query: 119 EESNEDVPDGEGVIPDATQERHETRD---FYDLARDGEQPLYEGC-TKYSKLSFLVKLYH 174
E + D ++ D RD F L D + PLY+GC +K+SKLS +++L
Sbjct: 114 ETIDLDTQCLSTMLHDIEDAEDNDRDYEKFSKLVEDCQMPLYDGCKSKHSKLSCVLELMK 173
Query: 175 IKTLCGVTDKAMTMILELLHD 195
+K G +DK+ T +LELL D
Sbjct: 174 LKASNGWSDKSFTELLELLKD 194
>emb|CAD40845.3| OSJNBa0086B14.16 [Oryza sativa (japonica cultivar-group)]
gi|50924634|ref|XP_472674.1| OSJNBa0086B14.16 [Oryza
sativa (japonica cultivar-group)]
Length = 876
Score = 92.0 bits (227), Expect = 8e-18
Identities = 66/201 (32%), Positives = 101/201 (49%), Gaps = 18/201 (8%)
Query: 6 MDKSWIEMP-RNTMAYEEGVKRFIDFAFE--RSSIEGKIICPCPRCEFRKR-QTRDEVYD 61
MD+ W+ R++ Y EGV F+ FA +S + ++CPC C+ + + +DEV+
Sbjct: 5 MDRRWMYYAHRSSTEYREGVTEFVTFADNDRKSRMSMHMLCPCRDCKNEQMIEDKDEVHA 64
Query: 62 HLICKQLPKGYTFWFDHGETMNNSPQNVPNSVEQTMVDEDPIQNMI---NGAFGVDMHHG 118
HLI K YT W HGE Q P+ + ++D+D ++N G F G
Sbjct: 65 HLIMNGFMKKYTCWTKHGE------QEAPDVAAEEVLDQD-VENTAAAREGMFVPSPLGG 117
Query: 119 EESNEDVPDGEGVIPDATQERHETRD---FYDLARDGEQPLYEGC-TKYSKLSFLVKLYH 174
E + D ++ D RD F L D + PLY+GC +K+SKLS +++L
Sbjct: 118 ETIDLDTQCLSTMLHDIEDAEDNDRDYEKFSKLVEDCQMPLYDGCKSKHSKLSCVLELMK 177
Query: 175 IKTLCGVTDKAMTMILELLHD 195
+K G +DK+ T +LELL D
Sbjct: 178 LKASNGWSDKSFTELLELLKD 198
>ref|NP_908364.1| putative retrotransposable elements TNP2 protein [Oryza sativa
(japonica cultivar-group)]
Length = 349
Score = 92.0 bits (227), Expect = 8e-18
Identities = 66/201 (32%), Positives = 101/201 (49%), Gaps = 18/201 (8%)
Query: 6 MDKSWIEMP-RNTMAYEEGVKRFIDFAFE--RSSIEGKIICPCPRCEFRKR-QTRDEVYD 61
MD+ W+ R++ Y EGV F+ FA +S + ++CPC C+ + + +DEV+
Sbjct: 1 MDRRWMYYAHRSSTEYREGVTEFVTFADNDRKSRMSMHMLCPCRDCKNEQMIEDKDEVHA 60
Query: 62 HLICKQLPKGYTFWFDHGETMNNSPQNVPNSVEQTMVDEDPIQNMI---NGAFGVDMHHG 118
HLI K YT W HGE Q P+ + ++D+D ++N G F G
Sbjct: 61 HLIMNGFMKKYTCWTKHGE------QEAPDVAAEEVLDQD-VENTAAAREGMFVPSPLGG 113
Query: 119 EESNEDVPDGEGVIPDATQERHETRD---FYDLARDGEQPLYEGC-TKYSKLSFLVKLYH 174
E + D ++ D RD F L D + PLY+GC +K+SKLS +++L
Sbjct: 114 ETIDLDTQCLSTMLHDIEDAEDNDRDYEKFSKLVEDCQMPLYDGCKSKHSKLSCVLELMK 173
Query: 175 IKTLCGVTDKAMTMILELLHD 195
+K G +DK+ T +LELL D
Sbjct: 174 LKASNGWSDKSFTELLELLKD 194
>gb|AAV32149.1| putative polyprotein [Oryza sativa (japonica cultivar-group)]
Length = 1095
Score = 92.0 bits (227), Expect = 8e-18
Identities = 66/201 (32%), Positives = 101/201 (49%), Gaps = 18/201 (8%)
Query: 6 MDKSWIEMP-RNTMAYEEGVKRFIDFAFE--RSSIEGKIICPCPRCEFRKR-QTRDEVYD 61
MD+ W+ R++ Y EGV F+ FA +S + ++CPC C+ + + +DEV+
Sbjct: 1 MDRRWMYYAHRSSTEYREGVTEFVTFADNDRKSRMSMHMLCPCRDCKNEQMIEDKDEVHA 60
Query: 62 HLICKQLPKGYTFWFDHGETMNNSPQNVPNSVEQTMVDEDPIQNMI---NGAFGVDMHHG 118
HLI K YT W HGE Q P+ + ++D+D ++N G F G
Sbjct: 61 HLIMNGFMKKYTCWTKHGE------QEAPDVAAEEVLDQD-VENTAAAREGMFVPSPLGG 113
Query: 119 EESNEDVPDGEGVIPDATQERHETRD---FYDLARDGEQPLYEGC-TKYSKLSFLVKLYH 174
E + D ++ D RD F L D + PLY+GC +K+SKLS +++L
Sbjct: 114 ETIDLDTQCLSTMLHDIEDAEDNDRDYEKFSKLVEDCQMPLYDGCKSKHSKLSCVLELMK 173
Query: 175 IKTLCGVTDKAMTMILELLHD 195
+K G +DK+ T +LELL D
Sbjct: 174 LKASNGWSDKSFTELLELLKD 194
>gb|AAX96209.1| transposon protein, putative, CACTA, En/Spm sub-class [Oryza sativa
(japonica cultivar-group)] gi|62732737|gb|AAX94856.1|
transposon protein, putative, CACTA, En/Spm sub-class
[Oryza sativa (japonica cultivar-group)]
Length = 1100
Score = 92.0 bits (227), Expect = 8e-18
Identities = 66/201 (32%), Positives = 101/201 (49%), Gaps = 18/201 (8%)
Query: 6 MDKSWIEMP-RNTMAYEEGVKRFIDFAFE--RSSIEGKIICPCPRCEFRKR-QTRDEVYD 61
MD+ W+ R++ Y EGV F+ FA +S + ++CPC C+ + + +DEV+
Sbjct: 11 MDRRWMYYAHRSSTEYREGVTEFVTFADNDRKSRMSMHMLCPCRDCKNEQMIEDKDEVHA 70
Query: 62 HLICKQLPKGYTFWFDHGETMNNSPQNVPNSVEQTMVDEDPIQNMI---NGAFGVDMHHG 118
HLI K YT W HGE Q P+ + ++D+D ++N G F G
Sbjct: 71 HLIMNGFMKKYTCWTKHGE------QEAPDVAAEEVLDQD-VENTAAAREGMFVPSPLGG 123
Query: 119 EESNEDVPDGEGVIPDATQERHETRD---FYDLARDGEQPLYEGC-TKYSKLSFLVKLYH 174
E + D ++ D RD F L D + PLY+GC +K+SKLS +++L
Sbjct: 124 ETIDLDTQCLSTMLHDIEDAEDNDRDYEKFSKLVEDCQMPLYDGCKSKHSKLSCVLELMK 183
Query: 175 IKTLCGVTDKAMTMILELLHD 195
+K G +DK+ T +LELL D
Sbjct: 184 LKASNGWSDKSFTELLELLKD 204
>gb|AAX95206.1| transposon protein, putative, CACTA, En/Spm sub-class [Oryza sativa
(japonica cultivar-group)] gi|62733008|gb|AAX95127.1|
transposon protein, putative, CACTA, En/Spm sub-class
[Oryza sativa (japonica cultivar-group)]
Length = 1095
Score = 92.0 bits (227), Expect = 8e-18
Identities = 66/201 (32%), Positives = 101/201 (49%), Gaps = 18/201 (8%)
Query: 6 MDKSWIEMP-RNTMAYEEGVKRFIDFAFE--RSSIEGKIICPCPRCEFRKR-QTRDEVYD 61
MD+ W+ R++ Y EGV F+ FA +S + ++CPC C+ + + +DEV+
Sbjct: 1 MDRRWMYYAHRSSTEYREGVTEFVTFADNDRKSRMSMHMLCPCRDCKNEQMIEDKDEVHA 60
Query: 62 HLICKQLPKGYTFWFDHGETMNNSPQNVPNSVEQTMVDEDPIQNMI---NGAFGVDMHHG 118
HLI K YT W HGE Q P+ + ++D+D ++N G F G
Sbjct: 61 HLIMNGFMKKYTCWTKHGE------QEAPDVAAEEVLDQD-VENTAAAREGMFVPSPLGG 113
Query: 119 EESNEDVPDGEGVIPDATQERHETRD---FYDLARDGEQPLYEGC-TKYSKLSFLVKLYH 174
E + D ++ D RD F L D + PLY+GC +K+SKLS +++L
Sbjct: 114 ETIDLDTQCLSTMLHDIEDAEDNDRDYEKFSKLVEDCQMPLYDGCKSKHSKLSCVLELMK 173
Query: 175 IKTLCGVTDKAMTMILELLHD 195
+K G +DK+ T +LELL D
Sbjct: 174 LKASNGWSDKSFTELLELLKD 194
Database: nr
Posted date: Jul 5, 2005 12:34 AM
Number of letters in database: 863,360,394
Number of sequences in database: 2,540,612
Lambda K H
0.320 0.138 0.427
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 359,665,143
Number of Sequences: 2540612
Number of extensions: 15326046
Number of successful extensions: 33219
Number of sequences better than 10.0: 354
Number of HSP's better than 10.0 without gapping: 93
Number of HSP's successfully gapped in prelim test: 261
Number of HSP's that attempted gapping in prelim test: 32572
Number of HSP's gapped (non-prelim): 375
length of query: 199
length of database: 863,360,394
effective HSP length: 121
effective length of query: 78
effective length of database: 555,946,342
effective search space: 43363814676
effective search space used: 43363814676
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 72 (32.3 bits)
Lotus: description of TM0206b.5