BLAST2 result
BLASTP 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TM0206b.1
(35 letters)
Database: nr
2,540,612 sequences; 863,360,394 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_310632.2| ENSANGP00000020778 [Anopheles gambiae str. PEST... 60 2e-08
ref|XP_546182.1| PREDICTED: similar to Peptidyl-prolyl cis-trans... 60 2e-08
gb|AAY66982.1| cyclophilin A [Ixodes scapularis] 60 2e-08
ref|NP_598845.1| peptidylprolyl isomerase F [Mus musculus] gi|13... 59 3e-08
emb|CAI40994.1| peptidylprolyl isomerase F (cyclophilin F) [Homo... 59 3e-08
ref|NP_758443.1| peptidylprolyl isomerase F (cyclophilin F) [Rat... 59 3e-08
emb|CAI40995.1| peptidylprolyl isomerase F (cyclophilin F) [Homo... 59 3e-08
ref|XP_507866.1| PREDICTED: similar to Peptidyl-prolyl cis-trans... 59 3e-08
pdb|2BIU|X Chain X, Crystal Structure Of Human Cyclophilin D At ... 59 3e-08
gb|AAF71354.1| cyclophilin [Macaca mulatta] 59 3e-08
gb|AAT73779.1| cyclophilin A [Aotus trivirgatus] 59 4e-08
ref|XP_484793.2| PREDICTED: similar to Peptidyl-prolyl cis-trans... 59 4e-08
ref|XP_341364.2| PREDICTED: similar to Peptidyl-prolyl cis-trans... 59 5e-08
sp|Q41651|CYPB_VICFA Peptidyl-prolyl cis-trans isomerase, chloro... 59 5e-08
ref|XP_619108.1| PREDICTED: similar to Peptidyl-prolyl cis-trans... 58 6e-08
emb|CAB71910.1| peptidylprolyl isomerase ROC4 [Arabidopsis thali... 58 8e-08
gb|AAM63944.1| peptidylprolyl isomerase ROC4 [Arabidopsis thaliana] 58 8e-08
ref|XP_495800.1| PREDICTED: similar to peptidylprolyl isomerase ... 57 1e-07
pir||CSPGA peptidylprolyl isomerase (EC 5.2.1.8) A - pig gi|6840... 57 1e-07
emb|CAA34961.1| unnamed protein product [Cricetulus longicaudatu... 57 1e-07
>ref|XP_310632.2| ENSANGP00000020778 [Anopheles gambiae str. PEST]
gi|55243344|gb|EAA06299.3| ENSANGP00000020778 [Anopheles
gambiae str. PEST]
Length = 164
Score = 59.7 bits (143), Expect = 2e-08
Identities = 25/30 (83%), Positives = 29/30 (96%)
Query: 6 FVVKHVGPGVLSMANAGPNTNGSQFFISTV 35
F++KH GPG+LSMANAGPNTNGSQFFI+TV
Sbjct: 88 FILKHTGPGILSMANAGPNTNGSQFFITTV 117
>ref|XP_546182.1| PREDICTED: similar to Peptidyl-prolyl cis-trans isomerase,
mitochondrial precursor (PPIase) (Rotamase) (Cyclophilin
F) [Canis familiaris]
Length = 288
Score = 59.7 bits (143), Expect = 2e-08
Identities = 27/30 (90%), Positives = 28/30 (93%)
Query: 6 FVVKHVGPGVLSMANAGPNTNGSQFFISTV 35
F +KHVGPGVLSMANAGPNTNGSQFFI TV
Sbjct: 120 FTLKHVGPGVLSMANAGPNTNGSQFFICTV 149
>gb|AAY66982.1| cyclophilin A [Ixodes scapularis]
Length = 165
Score = 59.7 bits (143), Expect = 2e-08
Identities = 25/30 (83%), Positives = 29/30 (96%)
Query: 6 FVVKHVGPGVLSMANAGPNTNGSQFFISTV 35
F++KH GPG+LSMANAGPNTNGSQFFI+TV
Sbjct: 88 FILKHTGPGILSMANAGPNTNGSQFFITTV 117
>ref|NP_598845.1| peptidylprolyl isomerase F [Mus musculus]
gi|13278483|gb|AAH04041.1| Peptidylprolyl isomerase F
[Mus musculus] gi|20137912|sp|Q99KR7|PPIF_MOUSE
Peptidyl-prolyl cis-trans isomerase, mitochondrial
precursor (PPIase) (Rotamase) (Cyclophilin F)
Length = 206
Score = 59.3 bits (142), Expect = 3e-08
Identities = 26/30 (86%), Positives = 28/30 (92%)
Query: 6 FVVKHVGPGVLSMANAGPNTNGSQFFISTV 35
F +KHVGPGVLSMANAGPNTNGSQFFI T+
Sbjct: 129 FTLKHVGPGVLSMANAGPNTNGSQFFICTI 158
>emb|CAI40994.1| peptidylprolyl isomerase F (cyclophilin F) [Homo sapiens]
gi|55660882|emb|CAH72725.1| peptidylprolyl isomerase F
(cyclophilin F) [Homo sapiens]
gi|13477127|gb|AAH05020.1| Peptidylprolyl isomerase F,
precursor [Homo sapiens] gi|231968|sp|P30405|PPIF_HUMAN
Peptidyl-prolyl cis-trans isomerase, mitochondrial
precursor (PPIase) (Rotamase) (Cyclophilin F)
gi|181274|gb|AAA58434.1| cyclophilin 3 protein
gi|5031987|ref|NP_005720.1| peptidylprolyl isomerase F
precursor [Homo sapiens]
Length = 207
Score = 59.3 bits (142), Expect = 3e-08
Identities = 26/30 (86%), Positives = 28/30 (92%)
Query: 6 FVVKHVGPGVLSMANAGPNTNGSQFFISTV 35
F +KHVGPGVLSMANAGPNTNGSQFFI T+
Sbjct: 130 FTLKHVGPGVLSMANAGPNTNGSQFFICTI 159
>ref|NP_758443.1| peptidylprolyl isomerase F (cyclophilin F) [Rattus norvegicus]
gi|56268806|gb|AAH86977.1| Peptidylprolyl isomerase F
(cyclophilin F) [Rattus norvegicus]
gi|2507228|sp|P29117|PPIF_RAT Peptidyl-prolyl cis-trans
isomerase, mitochondrial precursor (PPIase) (Rotamase)
(Cyclophilin F) gi|1549271|gb|AAB08453.1| cyclophilin D
[Rattus norvegicus]
Length = 206
Score = 59.3 bits (142), Expect = 3e-08
Identities = 26/30 (86%), Positives = 28/30 (92%)
Query: 6 FVVKHVGPGVLSMANAGPNTNGSQFFISTV 35
F +KHVGPGVLSMANAGPNTNGSQFFI T+
Sbjct: 129 FTLKHVGPGVLSMANAGPNTNGSQFFICTI 158
>emb|CAI40995.1| peptidylprolyl isomerase F (cyclophilin F) [Homo sapiens]
gi|57162165|emb|CAI40258.1| peptidylprolyl isomerase F
(cyclophilin F) [Homo sapiens]
Length = 164
Score = 59.3 bits (142), Expect = 3e-08
Identities = 26/30 (86%), Positives = 28/30 (92%)
Query: 6 FVVKHVGPGVLSMANAGPNTNGSQFFISTV 35
F +KHVGPGVLSMANAGPNTNGSQFFI T+
Sbjct: 93 FTLKHVGPGVLSMANAGPNTNGSQFFICTI 122
>ref|XP_507866.1| PREDICTED: similar to Peptidyl-prolyl cis-trans isomerase,
mitochondrial precursor (PPIase) (Rotamase) (Cyclophilin
F) [Pan troglodytes]
Length = 319
Score = 59.3 bits (142), Expect = 3e-08
Identities = 26/30 (86%), Positives = 28/30 (92%)
Query: 6 FVVKHVGPGVLSMANAGPNTNGSQFFISTV 35
F +KHVGPGVLSMANAGPNTNGSQFFI T+
Sbjct: 130 FTLKHVGPGVLSMANAGPNTNGSQFFICTI 159
>pdb|2BIU|X Chain X, Crystal Structure Of Human Cyclophilin D At 1.7 A
Resolution, Dmso Complex gi|60594461|pdb|2BIT|X Chain X,
Crystal Structure Of Human Cyclophilin D At 1.7 A
Resolution
Length = 165
Score = 59.3 bits (142), Expect = 3e-08
Identities = 26/30 (86%), Positives = 28/30 (92%)
Query: 6 FVVKHVGPGVLSMANAGPNTNGSQFFISTV 35
F +KHVGPGVLSMANAGPNTNGSQFFI T+
Sbjct: 88 FTLKHVGPGVLSMANAGPNTNGSQFFICTI 117
>gb|AAF71354.1| cyclophilin [Macaca mulatta]
Length = 158
Score = 59.3 bits (142), Expect = 3e-08
Identities = 26/30 (86%), Positives = 28/30 (92%)
Query: 6 FVVKHVGPGVLSMANAGPNTNGSQFFISTV 35
F +KHVGPGVLSMANAGPNTNGSQFFI T+
Sbjct: 93 FTLKHVGPGVLSMANAGPNTNGSQFFICTI 122
>gb|AAT73779.1| cyclophilin A [Aotus trivirgatus]
Length = 164
Score = 58.9 bits (141), Expect = 4e-08
Identities = 25/30 (83%), Positives = 28/30 (93%)
Query: 6 FVVKHVGPGVLSMANAGPNTNGSQFFISTV 35
F++KH GPG+LSMANAGPNTNGSQFFI TV
Sbjct: 88 FILKHTGPGILSMANAGPNTNGSQFFICTV 117
>ref|XP_484793.2| PREDICTED: similar to Peptidyl-prolyl cis-trans isomerase A
(PPIase) (Rotamase) (Cyclophilin A) (Cyclosporin
A-binding protein) (SP18) [Mus musculus]
Length = 232
Score = 58.9 bits (141), Expect = 4e-08
Identities = 25/30 (83%), Positives = 28/30 (93%)
Query: 6 FVVKHVGPGVLSMANAGPNTNGSQFFISTV 35
F++KH GPG+LSMANAGPNTNGSQFFI TV
Sbjct: 156 FILKHTGPGILSMANAGPNTNGSQFFICTV 185
>ref|XP_341364.2| PREDICTED: similar to Peptidyl-prolyl cis-trans isomerase A
(PPIase) (Rotamase) (Cyclophilin A) (Cyclosporin
A-binding protein) (P31) [Rattus norvegicus]
Length = 195
Score = 58.5 bits (140), Expect = 5e-08
Identities = 25/32 (78%), Positives = 28/32 (87%)
Query: 3 NTFFVVKHVGPGVLSMANAGPNTNGSQFFIST 34
N F++KH GPG+LSMANAGPNTNGSQFFI T
Sbjct: 85 NDSFILKHTGPGILSMANAGPNTNGSQFFICT 116
>sp|Q41651|CYPB_VICFA Peptidyl-prolyl cis-trans isomerase, chloroplast precursor (PPIase)
(Rotamase) (Cyclophilin) (Cyclosporin A-binding protein)
(CYP B) gi|7437324|pir||T12096 peptidylprolyl isomerase
(EC 5.2.1.8) - fava bean gi|499693|gb|AAA64430.1|
cyclophilin
Length = 248
Score = 58.5 bits (140), Expect = 5e-08
Identities = 27/30 (90%), Positives = 28/30 (93%)
Query: 6 FVVKHVGPGVLSMANAGPNTNGSQFFISTV 35
F +KHVGPGVLSMANAGPNTNGSQFFI TV
Sbjct: 166 FDLKHVGPGVLSMANAGPNTNGSQFFICTV 195
>ref|XP_619108.1| PREDICTED: similar to Peptidyl-prolyl cis-trans isomerase A
(PPIase) (Rotamase) (Cyclophilin A) (Cyclosporin
A-binding protein) (SP18) [Mus musculus]
Length = 216
Score = 58.2 bits (139), Expect = 6e-08
Identities = 25/32 (78%), Positives = 28/32 (87%)
Query: 3 NTFFVVKHVGPGVLSMANAGPNTNGSQFFIST 34
N F++KH GPG+LSMANAGPNTNGSQFFI T
Sbjct: 137 NENFILKHTGPGILSMANAGPNTNGSQFFICT 168
>emb|CAB71910.1| peptidylprolyl isomerase ROC4 [Arabidopsis thaliana]
gi|20259872|gb|AAM13283.1| peptidylprolyl isomerase ROC4
[Arabidopsis thaliana] gi|16648947|gb|AAL24325.1|
peptidylprolyl isomerase ROC4 [Arabidopsis thaliana]
gi|1322278|gb|AAB96831.1| cyclophilin [Arabidopsis
thaliana] gi|15228674|ref|NP_191762.1| peptidyl-prolyl
cis-trans isomerase, chloroplast / cyclophilin /
rotamase / cyclosporin A-binding protein (ROC4)
[Arabidopsis thaliana] gi|1076368|pir||B53422
peptidylprolyl isomerase (EC 5.2.1.8) ROC4 - Arabidopsis
thaliana gi|461899|sp|P34791|CYP4_ARATH Peptidyl-prolyl
cis-trans isomerase, chloroplast precursor (PPIase)
(Rotamase) (Cyclophilin) (Cyclosporin A-binding protein)
gi|405131|gb|AAA20048.1| cyclophilin
Length = 260
Score = 57.8 bits (138), Expect = 8e-08
Identities = 25/30 (83%), Positives = 27/30 (89%)
Query: 6 FVVKHVGPGVLSMANAGPNTNGSQFFISTV 35
F +KH GPG+LSMANAGPNTNGSQFFI TV
Sbjct: 179 FTLKHTGPGILSMANAGPNTNGSQFFICTV 208
>gb|AAM63944.1| peptidylprolyl isomerase ROC4 [Arabidopsis thaliana]
Length = 260
Score = 57.8 bits (138), Expect = 8e-08
Identities = 25/30 (83%), Positives = 27/30 (89%)
Query: 6 FVVKHVGPGVLSMANAGPNTNGSQFFISTV 35
F +KH GPG+LSMANAGPNTNGSQFFI TV
Sbjct: 179 FTLKHTGPGILSMANAGPNTNGSQFFICTV 208
>ref|XP_495800.1| PREDICTED: similar to peptidylprolyl isomerase A isoform 1;
cyclophilin A; peptidyl-prolyl cis-trans isomerase A; T
cell cyclophilin; rotamase; cyclosporin A-binding
protein [Homo sapiens]
Length = 105
Score = 57.4 bits (137), Expect = 1e-07
Identities = 24/29 (82%), Positives = 27/29 (92%)
Query: 6 FVVKHVGPGVLSMANAGPNTNGSQFFIST 34
F++KH GPG+LSMANAGPNTNGSQFFI T
Sbjct: 28 FILKHTGPGILSMANAGPNTNGSQFFICT 56
>pir||CSPGA peptidylprolyl isomerase (EC 5.2.1.8) A - pig gi|68401|pir||CSBOAB
peptidylprolyl isomerase (EC 5.2.1.8) A - bovine
Length = 163
Score = 57.4 bits (137), Expect = 1e-07
Identities = 24/29 (82%), Positives = 27/29 (92%)
Query: 6 FVVKHVGPGVLSMANAGPNTNGSQFFIST 34
F++KH GPG+LSMANAGPNTNGSQFFI T
Sbjct: 87 FILKHTGPGILSMANAGPNTNGSQFFICT 115
>emb|CAA34961.1| unnamed protein product [Cricetulus longicaudatus]
gi|68403|pir||CSHYAC peptidylprolyl isomerase (EC
5.2.1.8) A - Chinese hamster
gi|118098|sp|P14851|PPIA_CRILO Peptidyl-prolyl cis-trans
isomerase A (PPIase) (Rotamase) (Cyclophilin A)
(Cyclosporin A-binding protein)
Length = 164
Score = 57.4 bits (137), Expect = 1e-07
Identities = 24/29 (82%), Positives = 27/29 (92%)
Query: 6 FVVKHVGPGVLSMANAGPNTNGSQFFIST 34
F++KH GPG+LSMANAGPNTNGSQFFI T
Sbjct: 88 FILKHTGPGILSMANAGPNTNGSQFFICT 116
Database: nr
Posted date: Jul 5, 2005 12:34 AM
Number of letters in database: 863,360,394
Number of sequences in database: 2,540,612
Lambda K H
0.321 0.136 0.402
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 65,104,131
Number of Sequences: 2540612
Number of extensions: 1219707
Number of successful extensions: 2899
Number of sequences better than 10.0: 1010
Number of HSP's better than 10.0 without gapping: 990
Number of HSP's successfully gapped in prelim test: 20
Number of HSP's that attempted gapping in prelim test: 1895
Number of HSP's gapped (non-prelim): 1019
length of query: 35
length of database: 863,360,394
effective HSP length: 11
effective length of query: 24
effective length of database: 835,413,662
effective search space: 20049927888
effective search space used: 20049927888
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 69 (31.2 bits)
Lotus: description of TM0206b.1