Lotus
BLAST2 result
BLASTP 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= TM0201.8
         (841 letters)

Database: nr 
           2,540,612 sequences; 863,360,394 total letters

Searching..................................................done


                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

gb|AAP54660.1| putative plant disease resistance polyprotein [Or...    42  0.064
gb|AAV24812.1| putative polyprotein [Oryza sativa (japonica cult...    42  0.084
ref|XP_474255.1| OSJNBa0087O24.13 [Oryza sativa (japonica cultiv...    42  0.11
ref|NP_910012.1| putative polyprotein [Oryza sativa] gi|18855070...    41  0.14
gb|AAM65208.1| unknown [Arabidopsis thaliana]                          41  0.19
emb|CAC05636.1| putative protein [Arabidopsis thaliana]                40  0.24
gb|AAO37507.1| retrotransposon protein, putative, unclassified [...    40  0.24
ref|NP_908831.1| putative polyprotein [Oryza sativa (japonica cu...    40  0.24
gb|AAW43960.1| hypothetical protein CNF01230 [Cryptococcus neofo...    40  0.24
ref|XP_450743.1| unknown protein [Oryza sativa (japonica cultiva...    40  0.32
gb|EAL20022.1| hypothetical protein CNBF3480 [Cryptococcus neofo...    40  0.32
gb|AAF06089.1| F28J9.14 [Arabidopsis thaliana] gi|25403488|pir||...    40  0.32
ref|XP_470220.1| Putative mutator-like transposase [Oryza sativa...    40  0.42
ref|XP_344768.2| PREDICTED: similar to polycystic kidney disease...    39  0.54
gb|AAF13073.1| putative retroelement pol polyprotein [Arabidopsi...    39  0.54
emb|CAA75591.1| MtN12 [Medicago truncatula]                            39  0.54
emb|CAC01880.1| putative protein [Arabidopsis thaliana] gi|11358...    39  0.71
emb|CAB79939.1| putative protein [Arabidopsis thaliana] gi|28646...    39  0.71
gb|AAP53721.1| contains similarity to gag-pol polyprotein [Oryza...    39  0.71
gb|AAP52937.1| putative retroelement [Oryza sativa (japonica cul...    39  0.71

>gb|AAP54660.1| putative plant disease resistance polyprotein [Oryza sativa
           (japonica cultivar-group)] gi|37536142|ref|NP_922373.1|
           putative plant disease resistance polyprotein [Oryza
           sativa (japonica cultivar-group)]
           gi|10122034|gb|AAG13423.1| putative plant disease
           resistance polyprotein [Oryza sativa (japonica
           cultivar-group)]
          Length = 894

 Score = 42.4 bits (98), Expect = 0.064
 Identities = 18/73 (24%), Positives = 37/73 (50%), Gaps = 2/73 (2%)

Query: 89  PPLKLIKFSGSDPTFWLLNTEVFFLQHPWPLELRFQFIALYLEGQALTWFNLWR--HQLD 146
           P +   +F GSD   WL   E +F  +      +   + L++ G A  W++ ++  ++++
Sbjct: 120 PKMDFPRFDGSDVRIWLNMCETYFDMYQITQNFKVSAVVLHMSGNAAQWYHSYKLVNEVN 179

Query: 147 SWEKFREVFKLQF 159
           SW++FR     +F
Sbjct: 180 SWDQFRMAVATEF 192


>gb|AAV24812.1| putative polyprotein [Oryza sativa (japonica cultivar-group)]
          Length = 1475

 Score = 42.0 bits (97), Expect = 0.084
 Identities = 22/60 (36%), Positives = 29/60 (47%)

Query: 79  SQTQHSALSSPPLKLIKFSGSDPTFWLLNTEVFFLQHPWPLELRFQFIALYLEGQALTWF 138
           +Q   + L  P L++  FSG DP  WL   E FF     PL+        +L G+AL WF
Sbjct: 86  NQYAEAVLKGPRLEIPLFSGEDPIDWLKQCEKFFEITGTPLDQWVNLAVAHLNGRALKWF 145


>ref|XP_474255.1| OSJNBa0087O24.13 [Oryza sativa (japonica cultivar-group)]
           gi|32488663|emb|CAE03590.1| OSJNBa0087O24.13 [Oryza
           sativa (japonica cultivar-group)]
          Length = 1311

 Score = 41.6 bits (96), Expect = 0.11
 Identities = 37/151 (24%), Positives = 59/151 (38%), Gaps = 13/151 (8%)

Query: 53  NGHLRSIPPQPPPIYHHNPAPYHNYPSQTQHS---ALSSPPLKLIKFSGSDPTFWLLNTE 109
           N +    P  PP  + +NP P+H   +   HS   A  S  +    F G  P  W+   E
Sbjct: 249 NPYYHQEPFHPPHHHQYNPEPHHTNYAHRPHSADPAKRSRNVDFPTFEGDYPESWIRKAE 308

Query: 110 VFFLQHPWPLELRFQFIALYLEGQALTWFNLWRHQLD--SWEKFREVFKLQFIQFRSEHI 167
            +F  +  P E +     +++ G+A  W           SW +F+ +   +F        
Sbjct: 309 KYFSLYQTPEEDKVLLAEVHISGRADQWIESSAVPTASLSWPEFKTMVCQRF-------- 360

Query: 168 AASSGIVLEKTTVVVPPQKGVTVYHDESETT 198
           AA S I + +T   +     V  Y D+ E T
Sbjct: 361 AAKSKIEITETFRNLKQYGSVDSYIDKFEET 391


>ref|NP_910012.1| putative polyprotein [Oryza sativa] gi|18855070|gb|AAL79762.1|
           putative polyprotein [Oryza sativa]
          Length = 1087

 Score = 41.2 bits (95), Expect = 0.14
 Identities = 20/57 (35%), Positives = 27/57 (47%)

Query: 88  SPPLKLIKFSGSDPTFWLLNTEVFFLQHPWPLELRFQFIALYLEGQALTWFNLWRHQ 144
           SP +   KFSGSD   WL N E FFL +      +     L + G A  W+  W+ +
Sbjct: 142 SPKMDFPKFSGSDVRVWLDNCETFFLFYQIADGYKVSAAVLNMSGDAANWYQEWKFE 198


>gb|AAM65208.1| unknown [Arabidopsis thaliana]
          Length = 272

 Score = 40.8 bits (94), Expect = 0.19
 Identities = 27/100 (27%), Positives = 46/100 (46%), Gaps = 6/100 (6%)

Query: 59  IPPQPPPIYHHNPAPYHN----YPSQ-TQHSALSSPPLKLIKFSGSDPTFWLLNTEVFFL 113
           +P  PPP    + A   N    +P + +++  L  P +++  F G +   WL   E +F 
Sbjct: 77  LPVAPPPPTKQSTAAEDNSIDTHPHRMSRYIQLMKPKIEMPVFEGPNVNSWLTRAERYFE 136

Query: 114 QHPWPLELRFQFIALYLEGQALTWFNLW-RHQLDSWEKFR 152
              +    + Q + + +EG AL WFNL  R+    W  F+
Sbjct: 137 FGSFTNAEKIQLVYMSVEGPALCWFNLENRNPFVDWNDFK 176


>emb|CAC05636.1| putative protein [Arabidopsis thaliana]
          Length = 221

 Score = 40.4 bits (93), Expect = 0.24
 Identities = 26/109 (23%), Positives = 49/109 (44%), Gaps = 15/109 (13%)

Query: 95  KFSGSDPTFWLLNTEVFFLQHPWPLELRFQFIALYLEGQALTWFN------LWRHQLDSW 148
           +F+G     WL   E FFL    P EL+    +++ +    TW        +WRH    W
Sbjct: 73  RFNGDGIKDWLFQIEQFFLIDHTPEELKVDIASIHFDDIDATWHQSIVQSIMWRHVRHDW 132

Query: 149 EKFREVFKLQFIQFRSEHIAASSGIVLEKTTVVVPPQKGVTVYHDESET 197
             ++ + ++++ +   + IA     +L++T       +G+ VYH   E+
Sbjct: 133 WNYKLLLQVRYNKHVDDSIAKLK--LLQET-------EGIEVYHARFES 172


>gb|AAO37507.1| retrotransposon protein, putative, unclassified [Oryza sativa
           (japonica cultivar-group)] gi|50916505|ref|XP_468649.1|
           putative polyprotein [Oryza sativa (japonica
           cultivar-group)]
          Length = 1155

 Score = 40.4 bits (93), Expect = 0.24
 Identities = 18/73 (24%), Positives = 36/73 (48%), Gaps = 2/73 (2%)

Query: 89  PPLKLIKFSGSDPTFWLLNTEVFFLQHPWPLELRFQFIALYLEGQALTWFNLWR--HQLD 146
           P +   +F GSD   WL   E +F  +      +     L++ G A  W++ ++  ++++
Sbjct: 120 PKMDFPRFDGSDVRIWLDMCETYFDMYQITQNFKVSAAVLHMSGNAAQWYHSYKLVNEVN 179

Query: 147 SWEKFREVFKLQF 159
           SW++FR     +F
Sbjct: 180 SWDQFRMAVATEF 192


>ref|NP_908831.1| putative polyprotein [Oryza sativa (japonica cultivar-group)]
          Length = 1522

 Score = 40.4 bits (93), Expect = 0.24
 Identities = 28/109 (25%), Positives = 45/109 (40%), Gaps = 9/109 (8%)

Query: 58  SIPPQPPP-----IYHHNPAPYHNYPSQTQHSALSSPPLKLIKFSGSDPTFWLLNTEVFF 112
           S   QPPP     +    P    N   Q + S +  P +   KF G+D   W+ N E +F
Sbjct: 95  STSTQPPPEVEVPVRSGQPPVRDNSDVQGRRSWV--PKMDFPKFDGTDVCVWVDNCETYF 152

Query: 113 LQHPWPLELRFQFIALYLEGQALTWFNLWRHQ--LDSWEKFREVFKLQF 159
             +      +    +L + G A  W+  W+ +    +WE+ RE    +F
Sbjct: 153 ALYQITEGFKVSAASLNMIGDAAHWYQAWKQERGWPTWEQLREAVLNEF 201


>gb|AAW43960.1| hypothetical protein CNF01230 [Cryptococcus neoformans var.
           neoformans JEC21] gi|58268222|ref|XP_571267.1|
           hypothetical protein CNF01230 [Cryptococcus neoformans
           var. neoformans JEC21]
          Length = 436

 Score = 40.4 bits (93), Expect = 0.24
 Identities = 36/135 (26%), Positives = 53/135 (38%), Gaps = 16/135 (11%)

Query: 57  RSIPPQPPPIYHHNPAPYHNYPSQTQHSALSSPPLKLIKFSGSDP-TFWLLNTEVFFLQH 115
           RS PP+PP      P+P H  P      A + PP   + F+G        +N     +Q+
Sbjct: 70  RSPPPKPP-----RPSPSHQ-PVPAPEPATNLPPALPVTFTGERTRALAFINLLEHSIQY 123

Query: 116 PWPL-----ELRFQFIALYLEGQALTWFNLWR----HQLDSWEKFREVFKLQFIQFRSEH 166
            +        L   + + +L G A TWF   R      L SW+ FR  F   +I      
Sbjct: 124 HYDAFFANPSLAVSWASAHLSGPAATWFQKLRATSPEALSSWKAFRSAFADAYIPPSGRL 183

Query: 167 IAASSGIVLEKTTVV 181
           +     + L +TT V
Sbjct: 184 LLLEQLLELRQTTTV 198


>ref|XP_450743.1| unknown protein [Oryza sativa (japonica cultivar-group)]
           gi|49389036|dbj|BAD26276.1| unknown protein [Oryza
           sativa (japonica cultivar-group)]
           gi|49387691|dbj|BAD26037.1| unknown protein [Oryza
           sativa (japonica cultivar-group)]
          Length = 459

 Score = 40.0 bits (92), Expect = 0.32
 Identities = 25/93 (26%), Positives = 44/93 (46%), Gaps = 13/93 (13%)

Query: 195 SETTADPQQKPQVLSDAKPHTPTSMALSSPVSTQKVSAGIIHIEHFCPTVFETPPTKRPL 254
           + T   P++KP++ + A   TP S A  +P+  + + AG++ +          P +  P+
Sbjct: 35  TSTAPPPRKKPRLPAAALTPTPRSTAPFAPIPHRVLLAGVLSL----------PASGSPV 84

Query: 255 DISTHCSQVISTPPQIRSD---CIINSFTPDAV 284
              +HC  +  +PP   S    C +  F PDAV
Sbjct: 85  ACRSHCLSLSDSPPPASSASVCCYLLDFDPDAV 117


>gb|EAL20022.1| hypothetical protein CNBF3480 [Cryptococcus neoformans var.
           neoformans B-3501A]
          Length = 419

 Score = 40.0 bits (92), Expect = 0.32
 Identities = 36/135 (26%), Positives = 53/135 (38%), Gaps = 16/135 (11%)

Query: 57  RSIPPQPPPIYHHNPAPYHNYPSQTQHSALSSPPLKLIKFSGSDP-TFWLLNTEVFFLQH 115
           RS PP+PP      P+P H  P      A + PP   + F+G        +N     +Q+
Sbjct: 70  RSPPPKPP-----RPSPSHQ-PVPAPEPATNLPPALPVTFTGERTRALAFINLLEHSVQY 123

Query: 116 PWPL-----ELRFQFIALYLEGQALTWFNLWR----HQLDSWEKFREVFKLQFIQFRSEH 166
            +        L   + + +L G A TWF   R      L SW+ FR  F   +I      
Sbjct: 124 HYDAFFANPSLAVSWASAHLSGPAATWFQKLRATSPEALSSWKAFRSAFADAYIPPSGRL 183

Query: 167 IAASSGIVLEKTTVV 181
           +     + L +TT V
Sbjct: 184 LLLEQLLELRQTTTV 198


>gb|AAF06089.1| F28J9.14 [Arabidopsis thaliana] gi|25403488|pir||C86485 protein
           F28J9.14 [imported] - Arabidopsis thaliana
          Length = 525

 Score = 40.0 bits (92), Expect = 0.32
 Identities = 25/104 (24%), Positives = 44/104 (42%), Gaps = 8/104 (7%)

Query: 73  PYHNYP--SQTQHSALSSPPLKLIKFSGSDPTFWLLNTEVFFLQHPWPLELRFQFIALYL 130
           P HN    S T   A     L   +F+G     WLL  E FF  +  P E +   ++++ 
Sbjct: 119 PSHNIDVISNTYADATQPEKLDFPRFNGDKIQEWLLLVEQFFEIYQTPDEFKVCLVSIHF 178

Query: 131 EGQALTWFN------LWRHQLDSWEKFREVFKLQFIQFRSEHIA 168
           +G A  W        +W H    W  ++ + ++++ +   + IA
Sbjct: 179 DGLANAWHQSISHSVMWEHVRHDWWSYKLLLQVRYNEHVDDSIA 222


>ref|XP_470220.1| Putative mutator-like transposase [Oryza sativa]
            gi|15451606|gb|AAK98730.1| Putative mutator-like
            transposase [Oryza sativa]
          Length = 2421

 Score = 39.7 bits (91), Expect = 0.42
 Identities = 33/145 (22%), Positives = 53/145 (35%), Gaps = 11/145 (7%)

Query: 34   DFDTRLSAISGLIDQVSFLNGHLRSIPP---------QPPPIYHHNPAPYHNYPSQTQHS 84
            D   +L A +    +   L  H +S PP           P  Y H+PA    +      +
Sbjct: 1976 DLTAQLGARNAAEIRAEVLGSHPQSPPPANGTNSILFSTPAPYFHDPAMRTAFTGSAVGT 2035

Query: 85   ALSSPPLKLIKFSGSDPTFWLLNTEVFFLQHPWPLELRFQFIALYLEGQALTWFNLWRHQ 144
            +   PP+   +F G +P  W  N E +F  +        +   L   G A  W    R Q
Sbjct: 2036 STGLPPMPCPQFDGDNPQMWRENCEAYFDTYGVSPAHWVRIATLNFSGNASFWLQSVRSQ 2095

Query: 145  L--DSWEKFREVFKLQFIQFRSEHI 167
            L   +W +  E    +F + R + +
Sbjct: 2096 LIGVTWVELCEKVCAKFSRDRHQQL 2120


>ref|XP_344768.2| PREDICTED: similar to polycystic kidney disease 1-like 3 [Rattus
           norvegicus]
          Length = 2318

 Score = 39.3 bits (90), Expect = 0.54
 Identities = 27/104 (25%), Positives = 47/104 (44%), Gaps = 10/104 (9%)

Query: 195 SETTADPQQKPQVLSDAKPHTPTSMALSSPVSTQKVSAGIIHIEHFCPTVFETPPTKRPL 254
           S+TTA     PQV SD    + + + ++S      ++  +           +TP +  P 
Sbjct: 498 SDTTAS-SSPPQVTSDTPASSSSPLQVTSDTPASSITPQVTS---------DTPVSSSPP 547

Query: 255 DISTHCSQVISTPPQIRSDCIINSFTPDAVFSKKYYVSTRPPQL 298
            +++      S+PPQ+ SD   +S +P  V S     S+ PPQ+
Sbjct: 548 QVTSDTPASSSSPPQVTSDTPASSSSPPQVTSDTPSSSSSPPQV 591



 Score = 38.5 bits (88), Expect = 0.93
 Identities = 38/161 (23%), Positives = 66/161 (40%), Gaps = 31/161 (19%)

Query: 139 NLWRHQLDSWEKFREV-FKLQFIQFRSEHIAASSGIVLEKTTVVVPPQKGVTVYHDESET 197
           N+WR++LD W+  ++   +L+       H+    G  L       PP+         SE 
Sbjct: 223 NIWRNELDPWKPMKKRGAELE------RHMIPGDGPPLSMCHPPAPPEL--------SEI 268

Query: 198 TADPQQKPQVLSDAKPHTPTSMALSSPVSTQKVSAGIIHIEHFCPTVFETPPTKRPLDIS 257
              P      +S   P     M ++SP  + +V++ +        T   +PP      ++
Sbjct: 269 LCFPIDP---VSSVLPKATHKMTITSPTRSSQVTSVV--------TASSSPP-----QVT 312

Query: 258 THCSQVISTPPQIRSDCIINSFTPDAVFSKKYYVSTRPPQL 298
           +      S+PPQ+ SD   +S +P  V S     S+ PPQ+
Sbjct: 313 SDTPASSSSPPQVTSDTPASSSSPPQVTSDTPSSSSSPPQV 353


>gb|AAF13073.1| putative retroelement pol polyprotein [Arabidopsis thaliana]
          Length = 1661

 Score = 39.3 bits (90), Expect = 0.54
 Identities = 25/100 (25%), Positives = 42/100 (42%), Gaps = 2/100 (2%)

Query: 62  QPPPIYHHNPAPYHNYPSQTQHSALSSPPLKLIKFSGSDPTFWLLNTEVFFLQHPWPLEL 121
           Q  P +     P  + P Q +  A     +    + G +   WL   E  FL +    E 
Sbjct: 202 QTTPTFQTQTFPPQSAPHQPRFEAAPRRTVDYPAYEGGNADDWLFRLEQCFLSNRTLEEE 261

Query: 122 RFQFIALYLEGQALTWFNLW--RHQLDSWEKFREVFKLQF 159
           + +     L G ++TW+     R Q+ +W +F+E F L+F
Sbjct: 262 KLEKAVSCLTGASVTWWRCSKDREQIYTWREFQEKFMLRF 301


>emb|CAA75591.1| MtN12 [Medicago truncatula]
          Length = 113

 Score = 39.3 bits (90), Expect = 0.54
 Identities = 14/30 (46%), Positives = 15/30 (49%)

Query: 61 PQPPPIYHHNPAPYHNYPSQTQHSALSSPP 90
          P P P+YH  P P H YP    H    SPP
Sbjct: 62 PHPKPVYHSPPPPVHTYPPHVPHPVYHSPP 91


>emb|CAC01880.1| putative protein [Arabidopsis thaliana] gi|11358456|pir||T51426
           hypothetical protein T9L3_110 - Arabidopsis thaliana
          Length = 716

 Score = 38.9 bits (89), Expect = 0.71
 Identities = 22/84 (26%), Positives = 41/84 (48%), Gaps = 6/84 (7%)

Query: 91  LKLIKFSGSDPTFWLLNTEVFFLQHPWPLELRFQFIALYLEGQALTWFN------LWRHQ 144
           L+ ++F+G   T WL   E FFL    P EL+  F +L+ +  A T          W+H 
Sbjct: 106 LEHLRFNGDRITEWLFQIEQFFLIDRTPEELKVGFASLHFDDTAATLHQSIVQSMWWKHV 165

Query: 145 LDSWEKFREVFKLQFIQFRSEHIA 168
              W  ++ + ++++ +  ++ IA
Sbjct: 166 RHDWWSYKLLLQVRYDEHVNDSIA 189


>emb|CAB79939.1| putative protein [Arabidopsis thaliana] gi|2864622|emb|CAA16969.1|
           putative protein [Arabidopsis thaliana]
           gi|7485352|pir||T05407 hypothetical protein F10M6.150 -
           Arabidopsis thaliana
          Length = 1086

 Score = 38.9 bits (89), Expect = 0.71
 Identities = 22/84 (26%), Positives = 41/84 (48%), Gaps = 6/84 (7%)

Query: 91  LKLIKFSGSDPTFWLLNTEVFFLQHPWPLELRFQFIALYLEGQALTWFN------LWRHQ 144
           L+ ++F+G   T WL   E FFL    P EL+  F +L+ +  A T          W+H 
Sbjct: 106 LEHLRFNGDRITEWLFQIEQFFLIDRTPEELKVGFASLHFDDTAATLHQSIVQSMWWKHV 165

Query: 145 LDSWEKFREVFKLQFIQFRSEHIA 168
              W  ++ + ++++ +  ++ IA
Sbjct: 166 RHDWWSYKLLLQVRYDEHVNDSIA 189


>gb|AAP53721.1| contains similarity to gag-pol polyprotein [Oryza sativa (japonica
           cultivar-group)] gi|37534264|ref|NP_921434.1| contains
           similarity to gag-pol polyprotein [Oryza sativa
           (japonica cultivar-group)]
          Length = 1260

 Score = 38.9 bits (89), Expect = 0.71
 Identities = 40/155 (25%), Positives = 67/155 (42%), Gaps = 27/155 (17%)

Query: 14  PTVLDAIDAKL-ASMATKLQVDFDTRLSAISGLIDQVSFLNGHLRSIP------PQPPPI 66
           PT L  + A++  +  T+ + D +     ++GL D +  + G  + +P       +P P+
Sbjct: 106 PTALTPVQAQVNPNPETQTEADMEAMQQNMTGLQDMLRQMAGGEKGLPLSGGIKNRPIPL 165

Query: 67  YHHNPAPYHNYPSQTQHSALSSPPLKLIKFSGSDPTFWLLNTEVFFLQHPWPLELRFQFI 126
               P P   Y S+T      S     I+ +  D      NT+              + I
Sbjct: 166 QFKFP-PVPRYSSETDPKEFLSIYESAIEAAHGDE-----NTKA-------------KVI 206

Query: 127 ALYLEGQALTW-FNLWRHQLDSWEKFREVFKLQFI 160
            L L+G A +W FNL  + + SWE+ R+VF L F+
Sbjct: 207 HLALDGIARSWYFNLPANSIYSWEQLRDVFVLNFL 241


>gb|AAP52937.1| putative retroelement [Oryza sativa (japonica cultivar-group)]
           gi|37532696|ref|NP_920650.1| putative retroelement
           [Oryza sativa (japonica cultivar-group)]
           gi|19881710|gb|AAM01111.1| putative retroelement [Oryza
           sativa]
          Length = 1043

 Score = 38.9 bits (89), Expect = 0.71
 Identities = 19/62 (30%), Positives = 27/62 (42%), Gaps = 2/62 (3%)

Query: 89  PPLKLIKFSGSDPTFWLLNTEVFFLQHPWPLELRFQFIALYLEGQALTWFNLWR--HQLD 146
           P     +FSG +P  W  N E +F  +    E   QF  L+  G A  W   +   H ++
Sbjct: 110 PKTDFPRFSGENPKLWKKNAEKYFGMYNVAYETWAQFATLHFTGNAALWLQTYEELHSVE 169

Query: 147 SW 148
           SW
Sbjct: 170 SW 171


  Database: nr
    Posted date:  Jul 5, 2005 12:34 AM
  Number of letters in database: 863,360,394
  Number of sequences in database:  2,540,612
  
Lambda     K      H
   0.322    0.135    0.410 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,414,319,499
Number of Sequences: 2540612
Number of extensions: 58906612
Number of successful extensions: 154573
Number of sequences better than 10.0: 42
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 32
Number of HSP's that attempted gapping in prelim test: 154424
Number of HSP's gapped (non-prelim): 123
length of query: 841
length of database: 863,360,394
effective HSP length: 137
effective length of query: 704
effective length of database: 515,296,550
effective search space: 362768771200
effective search space used: 362768771200
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 80 (35.4 bits)


Lotus: description of TM0201.8