BLAST2 result
BLASTP 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TM0201.13
(413 letters)
Database: nr
2,540,612 sequences; 863,360,394 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAP94599.1| putative copia-type pol polyprotein [Zea mays] 474 e-132
gb|AAN40025.1| putative gag-pol polyprotein [Zea mays] 472 e-131
gb|AAP53706.1| hypothetical protein [Oryza sativa (japonica cult... 470 e-131
gb|AAD20307.1| copia-type pol polyprotein [Zea mays] 470 e-131
ref|NP_910082.1| putative gag-pol polyprotein [Oryza sativa (jap... 468 e-130
ref|NP_909107.1| unnamed protein product [Oryza sativa (japonica... 467 e-130
gb|AAM94552.1| putative polyprotein [Oryza sativa (japonica cult... 467 e-130
gb|AAN60494.1| Putative Zea mays retrotransposon Opie-2 [Oryza s... 467 e-130
ref|XP_474304.1| OSJNBb0004A17.2 [Oryza sativa (japonica cultiva... 467 e-130
gb|AAW57789.1| putative polyprotein [Oryza sativa (japonica cult... 465 e-129
gb|AAC49502.1| Pol [Zea mays] gi|7489803|pir||T04112 pol protein... 464 e-129
gb|AAL66759.1| putative pol protein [Zea mays] 462 e-129
gb|AAL75483.1| putative pol protein [Zea mays] 462 e-128
gb|AAP53179.1| putative retroelement [Oryza sativa (japonica cul... 460 e-128
gb|AAW57784.1| putative polyprotein [Oryza sativa (japonica cult... 460 e-128
ref|NP_912905.1| unnamed protein product [Oryza sativa (japonica... 459 e-128
gb|AAX96565.1| retrotransposon protein, putative, Ty1-copia sub-... 458 e-127
emb|CAE04884.2| OSJNBa0042I15.6 [Oryza sativa (japonica cultivar... 457 e-127
ref|XP_470878.1| putative gag-pol polyprotein [Oryza sativa (jap... 455 e-126
gb|AAP51900.1| putative Zea mays retrotransposon Opie-2 [Oryza s... 454 e-126
>gb|AAP94599.1| putative copia-type pol polyprotein [Zea mays]
Length = 1760
Score = 474 bits (1219), Expect = e-132
Identities = 233/392 (59%), Positives = 290/392 (73%)
Query: 17 SAFLNGYISEEVYVHQPPGFEDEKKPDHVFKLKKSLYGLKQAPRAWYERLSSFLLENEFV 76
SAFLNG I EEVYV QPPGFED + P+HV+KL K+LYGLKQAPRAWYE L FL+ N F
Sbjct: 1361 SAFLNGPIKEEVYVEQPPGFEDSEYPNHVYKLSKALYGLKQAPRAWYECLRDFLIANGFK 1420
Query: 77 RGKVDTTLFCKTYKDDILIVQIYVDDIIFGSANQSLCKEFSEMMQAEFEMSMMGELKYFL 136
GK D TLF KT ++D+ + QIYVDDIIFGS N+S C+EFS +M +FEMSMMGELKYFL
Sbjct: 1421 VGKADPTLFTKTLENDLFVCQIYVDDIIFGSTNESTCEEFSRIMTQKFEMSMMGELKYFL 1480
Query: 137 GIQVDQTPEGTYIHQSKYTKELLKKFNMLESTVAKTPMHPTCILEKEDKSGKVCQKLYRG 196
G QV Q EGT+I Q+KYT+++L KF M ++ KTPM L+ + V QK+YR
Sbjct: 1481 GFQVKQLQEGTFISQTKYTQDILSKFGMKDAKPIKTPMGTNGHLDLDTGGKSVDQKVYRS 1540
Query: 197 MIGSLLYLTASRPDILFSVHLCARFQSDPRETHLTAVKRILRYLKGTTNLGLMYKKTSEY 256
MIGSLLYL ASRPDI+ SV +CARFQSDP+E+HLTAVKRILRYL T GL Y + S +
Sbjct: 1541 MIGSLLYLCASRPDIMLSVCMCARFQSDPKESHLTAVKRILRYLAYTPKFGLWYPRGSTF 1600
Query: 257 KLSGYCDADYAGDRTERKSTSGNCQFLGSNLVSWASKRQSTIALSTAEAEYISAAICSTQ 316
L GY DAD+AG + RKSTSG CQFLG +LVSWASK+Q+++ALSTAEAEYI+A C Q
Sbjct: 1601 DLLGYSDADWAGCKINRKSTSGTCQFLGRSLVSWASKKQNSVALSTAEAEYIAAGHCCAQ 1660
Query: 317 MLWMKH*LEDYQILESNIPIYCDNTAAISLSKNPILHSRAKHIEVKYHFIRDYVQKGVLL 376
+LWM+ L DY + +P+ CDN +AI ++ NP+ HSR KHI ++YHF+RD+ QKG +
Sbjct: 1661 LLWMRQTLRDYGYKLTKVPLLCDNESAIKMADNPVEHSRTKHIAIRYHFLRDHQQKGDIE 1720
Query: 377 LKFVDTDHQWADIFTKPLAEDRFNFILKNLNM 408
+ +++T Q ADIFTKPL E F + LN+
Sbjct: 1721 ISYINTKDQLADIFTKPLDEQTFTKLRHELNI 1752
>gb|AAN40025.1| putative gag-pol polyprotein [Zea mays]
Length = 1892
Score = 472 bits (1214), Expect = e-131
Identities = 232/392 (59%), Positives = 290/392 (73%)
Query: 17 SAFLNGYISEEVYVHQPPGFEDEKKPDHVFKLKKSLYGLKQAPRAWYERLSSFLLENEFV 76
SAFLNG I EEVYV QPPGFED + P+HV++L K+LYGLKQAPRAWYE L FL+ N F
Sbjct: 1493 SAFLNGPIKEEVYVEQPPGFEDSEYPNHVYRLSKALYGLKQAPRAWYECLRDFLIANGFK 1552
Query: 77 RGKVDTTLFCKTYKDDILIVQIYVDDIIFGSANQSLCKEFSEMMQAEFEMSMMGELKYFL 136
GK D TLF KT ++D+ + QIYVDDIIFGS N+S C+EFS +M +FEMSMMGELKYFL
Sbjct: 1553 VGKADPTLFTKTLENDLFVCQIYVDDIIFGSTNESTCEEFSRIMTQKFEMSMMGELKYFL 1612
Query: 137 GIQVDQTPEGTYIHQSKYTKELLKKFNMLESTVAKTPMHPTCILEKEDKSGKVCQKLYRG 196
G QV Q EGT+I Q+KYT+++L KF M ++ KTPM L+ + V QK+YR
Sbjct: 1613 GFQVKQLREGTFISQTKYTQDILAKFGMKDAKPIKTPMGTNGHLDLDTGGKSVDQKVYRS 1672
Query: 197 MIGSLLYLTASRPDILFSVHLCARFQSDPRETHLTAVKRILRYLKGTTNLGLMYKKTSEY 256
MIGSLLYL ASRPDI+ SV +CARFQSDP+E+HLTAVKRILRYL T GL Y + S +
Sbjct: 1673 MIGSLLYLCASRPDIMLSVCMCARFQSDPKESHLTAVKRILRYLAYTPKFGLWYPRGSTF 1732
Query: 257 KLSGYCDADYAGDRTERKSTSGNCQFLGSNLVSWASKRQSTIALSTAEAEYISAAICSTQ 316
L GY DAD+AG + RKSTSG CQFLG +LVSWASK+Q+++ALSTAEAEYI+A C Q
Sbjct: 1733 DLIGYSDADWAGCKINRKSTSGTCQFLGRSLVSWASKKQNSVALSTAEAEYIAAGHCCAQ 1792
Query: 317 MLWMKH*LEDYQILESNIPIYCDNTAAISLSKNPILHSRAKHIEVKYHFIRDYVQKGVLL 376
+LWM+ L DY + +P+ CDN +AI ++ NP+ HSR KHI ++YHF+RD+ QKG +
Sbjct: 1793 LLWMRQTLRDYGYKLTKVPLLCDNESAIKMADNPVEHSRTKHIAIRYHFLRDHQQKGDIE 1852
Query: 377 LKFVDTDHQWADIFTKPLAEDRFNFILKNLNM 408
+ +++T Q ADIFTKPL E F + LN+
Sbjct: 1853 ISYINTKDQLADIFTKPLDEQSFTRLRHELNI 1884
>gb|AAP53706.1| hypothetical protein [Oryza sativa (japonica cultivar-group)]
gi|37534234|ref|NP_921419.1| hypothetical protein [Oryza
sativa (japonica cultivar-group)]
Length = 1419
Score = 470 bits (1209), Expect = e-131
Identities = 224/392 (57%), Positives = 297/392 (75%)
Query: 17 SAFLNGYISEEVYVHQPPGFEDEKKPDHVFKLKKSLYGLKQAPRAWYERLSSFLLENEFV 76
SAFLNG+I EEVYV QPPGFE+ P+HVFKL K+LYGLKQAPRAWY+RL +FLL F
Sbjct: 1021 SAFLNGFIQEEVYVKQPPGFENPDFPNHVFKLSKALYGLKQAPRAWYDRLKNFLLAKGFT 1080
Query: 77 RGKVDTTLFCKTYKDDILIVQIYVDDIIFGSANQSLCKEFSEMMQAEFEMSMMGELKYFL 136
GKVD TLF + D+ L VQIYVDDIIFG + ++ +F+E M+ EFEMSMMGEL YFL
Sbjct: 1081 MGKVDKTLFVLKHGDNQLFVQIYVDDIIFGCSTHAVVVDFAETMRREFEMSMMGELSYFL 1140
Query: 137 GIQVDQTPEGTYIHQSKYTKELLKKFNMLESTVAKTPMHPTCILEKEDKSGKVCQKLYRG 196
G+Q+ QTP+GT++HQ+KYTK+LL++F M TP+ T +L+ ++ V QK YR
Sbjct: 1141 GLQIKQTPQGTFVHQTKYTKDLLRRFKMENCKPISTPIGSTAVLDPDEDGEAVDQKEYRS 1200
Query: 197 MIGSLLYLTASRPDILFSVHLCARFQSDPRETHLTAVKRILRYLKGTTNLGLMYKKTSEY 256
MIGSLLYLTASRPDI F+V LCARFQ+ PR +H AVKRI+RYL T G+ Y +S
Sbjct: 1201 MIGSLLYLTASRPDIQFAVCLCARFQASPRASHRQAVKRIMRYLNHTLEFGIWYSTSSSI 1260
Query: 257 KLSGYCDADYAGDRTERKSTSGNCQFLGSNLVSWASKRQSTIALSTAEAEYISAAICSTQ 316
LSGY DAD+ G R +RKSTSG C FLG++L++W+S++QS++A STAE+EY++AA C +Q
Sbjct: 1261 CLSGYSDADFGGCRIDRKSTSGTCHFLGTSLIAWSSRKQSSVAQSTAESEYVAAASCCSQ 1320
Query: 317 MLWMKH*LEDYQILESNIPIYCDNTAAISLSKNPILHSRAKHIEVKYHFIRDYVQKGVLL 376
+LW+ L+DY I +P++CDNT+AI+++KNP+ HSR KHI++++HF+RD+V+KG +
Sbjct: 1321 ILWLLSTLKDYGITFEKVPLFCDNTSAINIAKNPVQHSRTKHIDIRFHFLRDHVEKGDVE 1380
Query: 377 LKFVDTDHQWADIFTKPLAEDRFNFILKNLNM 408
L+F+DT Q ADIFTKPL +RF F+ L +
Sbjct: 1381 LQFLDTKLQIADIFTKPLDSNRFAFLRGELGV 1412
>gb|AAD20307.1| copia-type pol polyprotein [Zea mays]
Length = 1063
Score = 470 bits (1209), Expect = e-131
Identities = 232/392 (59%), Positives = 290/392 (73%)
Query: 17 SAFLNGYISEEVYVHQPPGFEDEKKPDHVFKLKKSLYGLKQAPRAWYERLSSFLLENEFV 76
SAFLNG I EEVYV QPPGFED + P+HV++L K+LYGLKQAPRAWYE L FL+ N F
Sbjct: 664 SAFLNGPIKEEVYVEQPPGFEDSEYPNHVYRLSKALYGLKQAPRAWYECLRDFLIANGFK 723
Query: 77 RGKVDTTLFCKTYKDDILIVQIYVDDIIFGSANQSLCKEFSEMMQAEFEMSMMGELKYFL 136
GK D TLF KT ++D+ + QIYVDDIIFGS N+S C+EFS +M +FEMSMMGELKYFL
Sbjct: 724 VGKADPTLFTKTLENDLFVCQIYVDDIIFGSTNKSTCEEFSRIMTQKFEMSMMGELKYFL 783
Query: 137 GIQVDQTPEGTYIHQSKYTKELLKKFNMLESTVAKTPMHPTCILEKEDKSGKVCQKLYRG 196
G QV Q EGT+I Q+KYT+++L KF M ++ KTPM L+ + V QK+YR
Sbjct: 784 GFQVKQLQEGTFICQTKYTQDILTKFGMKDAKPIKTPMGTNGHLDLDTGGKSVDQKVYRS 843
Query: 197 MIGSLLYLTASRPDILFSVHLCARFQSDPRETHLTAVKRILRYLKGTTNLGLMYKKTSEY 256
MIGSLLYL ASRPDI+ SV +CARFQSDP+E+HLTAVKRILRYL T GL Y + S +
Sbjct: 844 MIGSLLYLCASRPDIMLSVCMCARFQSDPKESHLTAVKRILRYLAYTPKFGLWYPRGSTF 903
Query: 257 KLSGYCDADYAGDRTERKSTSGNCQFLGSNLVSWASKRQSTIALSTAEAEYISAAICSTQ 316
L GY DAD+AG + RKSTSG CQFLG +LVSWASK+Q+++ALSTAEAEYI+A C Q
Sbjct: 904 DLIGYSDADWAGCKINRKSTSGTCQFLGRSLVSWASKKQNSVALSTAEAEYIAAGHCCAQ 963
Query: 317 MLWMKH*LEDYQILESNIPIYCDNTAAISLSKNPILHSRAKHIEVKYHFIRDYVQKGVLL 376
+LWM+ L DY + +P+ CDN +AI ++ NP+ HSR KHI ++YHF+RD+ QKG +
Sbjct: 964 LLWMRQTLLDYGYKLTKVPLLCDNESAIKMADNPVEHSRTKHIAIRYHFLRDHQQKGDIE 1023
Query: 377 LKFVDTDHQWADIFTKPLAEDRFNFILKNLNM 408
+ +++T Q ADIFTKPL E F + LN+
Sbjct: 1024 ISYINTKDQLADIFTKPLDEQSFTRLRHELNI 1055
>ref|NP_910082.1| putative gag-pol polyprotein [Oryza sativa (japonica cultivar-group)]
gi|28269414|gb|AAO37957.1| putative gag-pol polyprotein
[Oryza sativa (japonica cultivar-group)]
Length = 1969
Score = 468 bits (1204), Expect = e-130
Identities = 228/392 (58%), Positives = 296/392 (75%)
Query: 17 SAFLNGYISEEVYVHQPPGFEDEKKPDHVFKLKKSLYGLKQAPRAWYERLSSFLLENEFV 76
SAFLNG I EEVYV QPPGFE+ K P+HVFKL+K+LYGLKQAPRAWYERL +FLL+N F
Sbjct: 1397 SAFLNGVIEEEVYVKQPPGFENPKFPNHVFKLEKALYGLKQAPRAWYERLKTFLLQNGFE 1456
Query: 77 RGKVDTTLFCKTYKDDILIVQIYVDDIIFGSANQSLCKEFSEMMQAEFEMSMMGELKYFL 136
G VD TLF D L+VQIYVDDIIFG ++ +L +FS++M EFEMSMMGEL +FL
Sbjct: 1457 MGAVDKTLFTLHSGIDFLLVQIYVDDIIFGGSSHALVAQFSDVMSREFEMSMMGELTFFL 1516
Query: 137 GIQVDQTPEGTYIHQSKYTKELLKKFNMLESTVAKTPMHPTCILEKEDKSGKVCQKLYRG 196
G+Q+ QT EG ++HQ+KY+KELLKKF+M + TPM T L ++ +V Q+ YR
Sbjct: 1517 GLQIKQTKEGIFVHQTKYSKELLKKFDMADCKPIATPMATTSSLGPDEDGEEVDQREYRS 1576
Query: 197 MIGSLLYLTASRPDILFSVHLCARFQSDPRETHLTAVKRILRYLKGTTNLGLMYKKTSEY 256
MIGSLLYLTASRPDI FSV LCARFQ+ PR +H AVKRI RY+K T G+ Y +S
Sbjct: 1577 MIGSLLYLTASRPDIHFSVCLCARFQASPRTSHRQAVKRIFRYIKSTLEYGIWYSCSSAL 1636
Query: 257 KLSGYCDADYAGDRTERKSTSGNCQFLGSNLVSWASKRQSTIALSTAEAEYISAAICSTQ 316
+ + DAD+AG + +RKSTSG C FLG++LVSW+S++QS++A STAEAEY++AA +Q
Sbjct: 1637 SVRAFSDADFAGCKIDRKSTSGTCHFLGTSLVSWSSRKQSSVAQSTAEAEYVAAASACSQ 1696
Query: 317 MLWMKH*LEDYQILESNIPIYCDNTAAISLSKNPILHSRAKHIEVKYHFIRDYVQKGVLL 376
+LWM L+DY + S +P+ CDNT+AI+++KNP+ HSR KHIE++YHF+RD V+KG ++
Sbjct: 1697 VLWMISTLKDYGLSFSGVPLLCDNTSAINIAKNPVQHSRTKHIEIRYHFLRDNVEKGTIV 1756
Query: 377 LKFVDTDHQWADIFTKPLAEDRFNFILKNLNM 408
L+FV+++ Q ADIFTKPL RF F+ L +
Sbjct: 1757 LEFVESEKQLADIFTKPLDRSRFEFLRSELGV 1788
>ref|NP_909107.1| unnamed protein product [Oryza sativa (japonica cultivar-group)]
Length = 1410
Score = 467 bits (1202), Expect = e-130
Identities = 228/392 (58%), Positives = 295/392 (75%)
Query: 17 SAFLNGYISEEVYVHQPPGFEDEKKPDHVFKLKKSLYGLKQAPRAWYERLSSFLLENEFV 76
SAFLNG I EEVYV QPPGFE+ K P+HVFKL K+LYGLKQAPRAWYERL +FLL+N F
Sbjct: 1012 SAFLNGVIEEEVYVKQPPGFENPKFPNHVFKLDKALYGLKQAPRAWYERLKTFLLQNGFE 1071
Query: 77 RGKVDTTLFCKTYKDDILIVQIYVDDIIFGSANQSLCKEFSEMMQAEFEMSMMGELKYFL 136
G VD TLF D L+VQIYVDDIIFG ++ +L +FS++M EFEMSMMGEL +FL
Sbjct: 1072 MGAVDKTLFTLHSGIDFLLVQIYVDDIIFGGSSHALVAQFSDVMSREFEMSMMGELTFFL 1131
Query: 137 GIQVDQTPEGTYIHQSKYTKELLKKFNMLESTVAKTPMHPTCILEKEDKSGKVCQKLYRG 196
G+Q+ QT EG ++HQ+KY+KELLKKF+M + TPM T L ++ +V Q+ YR
Sbjct: 1132 GLQIKQTKEGIFVHQTKYSKELLKKFDMADCKPIATPMATTSSLGPDEDGEEVDQREYRS 1191
Query: 197 MIGSLLYLTASRPDILFSVHLCARFQSDPRETHLTAVKRILRYLKGTTNLGLMYKKTSEY 256
MIGSLLYLTASRPDI FSV LCARFQ+ PR +H AVKRI RY+K T G+ Y +S
Sbjct: 1192 MIGSLLYLTASRPDIHFSVCLCARFQASPRTSHRQAVKRIFRYIKSTLEYGIWYSCSSAL 1251
Query: 257 KLSGYCDADYAGDRTERKSTSGNCQFLGSNLVSWASKRQSTIALSTAEAEYISAAICSTQ 316
+ + DAD+AG + +RKSTSG C FLG++LVSW+S++QS++A STAEAEY++AA +Q
Sbjct: 1252 SVRAFSDADFAGCKIDRKSTSGTCHFLGTSLVSWSSRKQSSVAQSTAEAEYVAAASACSQ 1311
Query: 317 MLWMKH*LEDYQILESNIPIYCDNTAAISLSKNPILHSRAKHIEVKYHFIRDYVQKGVLL 376
+LWM L+DY + S +P+ CDNT+AI+++KNP+ HSR KHIE++YHF+RD V+KG ++
Sbjct: 1312 VLWMISTLKDYGLSFSGVPLLCDNTSAINIAKNPVQHSRTKHIEIRYHFLRDNVEKGTIV 1371
Query: 377 LKFVDTDHQWADIFTKPLAEDRFNFILKNLNM 408
L+FV+++ Q ADIFTKPL RF F+ L +
Sbjct: 1372 LEFVESEKQLADIFTKPLDRSRFEFLRSELGV 1403
>gb|AAM94552.1| putative polyprotein [Oryza sativa (japonica cultivar-group)]
gi|31432496|gb|AAP54118.1| putative polyprotein [Oryza
sativa (japonica cultivar-group)]
gi|37535058|ref|NP_921831.1| putative polyprotein [Oryza
sativa (japonica cultivar-group)]
Length = 1584
Score = 467 bits (1201), Expect = e-130
Identities = 231/393 (58%), Positives = 295/393 (74%), Gaps = 2/393 (0%)
Query: 17 SAFLNGYISEEVYVHQPPGFEDEKKPDHVFKLKKSLYGLKQAPRAWYERLSSFLLENEFV 76
SAFLNG I+E V+V QPPGFED K P+HV+KL K+LYGLKQAPRAWYERL FLL +F
Sbjct: 1186 SAFLNGEIAELVFVEQPPGFEDPKNPNHVYKLSKALYGLKQAPRAWYERLRYFLLSKDFK 1245
Query: 77 RGKVDTTLFCKTYKDDILIVQIYVDDIIFGSANQSLCKEFSEMMQAEFEMSMMGELKYFL 136
GKV+TTLF K DD + QIYVDDIIFGS N+ CKEF +MM EFEMSM+GEL +FL
Sbjct: 1246 IGKVNTTLFTKIIGDDFFVCQIYVDDIIFGSTNEVFCKEFGDMMSREFEMSMIGELNFFL 1305
Query: 137 GIQVDQTPEGTYIHQSKYTKELLKKFNMLESTVAKTPMHPTCILEKEDKSGK-VCQKLYR 195
G+Q+ Q +GT++ Q+KY K+LLK+F + ++ KTPM L+ DK GK V KLYR
Sbjct: 1306 GLQIKQLKDGTFVSQTKYIKDLLKRFGLEDAKPIKTPMATNGHLDL-DKGGKPVDLKLYR 1364
Query: 196 GMIGSLLYLTASRPDILFSVHLCARFQSDPRETHLTAVKRILRYLKGTTNLGLMYKKTSE 255
MIGSLLYLTASRPDI+FSV +CARFQ+ P+E HL AVKRILRYLK ++ +GL Y K ++
Sbjct: 1365 SMIGSLLYLTASRPDIMFSVCMCARFQAAPKECHLVAVKRILRYLKHSSTIGLWYPKGAK 1424
Query: 256 YKLSGYCDADYAGDRTERKSTSGNCQFLGSNLVSWASKRQSTIALSTAEAEYISAAICST 315
+KL GY D+DYA + +RKSTSG+CQ LG +LVSW+SK+Q+++ALSTAEAEY+SA C
Sbjct: 1425 FKLVGYSDSDYASCKVDRKSTSGSCQMLGRSLVSWSSKKQNSVALSTAEAEYVSAGSCCA 1484
Query: 316 QMLWMKH*LEDYQILESNIPIYCDNTAAISLSKNPILHSRAKHIEVKYHFIRDYVQKGVL 375
Q+LWMK L DY I + P+ CDN AI ++ NP+ HSR KHI++++HF+RD+V K +
Sbjct: 1485 QLLWMKQTLLDYGISFTKTPLLCDNDRAIKIANNPVQHSRTKHIDIRHHFLRDHVTKCDI 1544
Query: 376 LLKFVDTDHQWADIFTKPLAEDRFNFILKNLNM 408
++ + T+ Q ADIFTKPL E RF + LN+
Sbjct: 1545 VISHIRTEDQLADIFTKPLNETRFCKLRNELNV 1577
>gb|AAN60494.1| Putative Zea mays retrotransposon Opie-2 [Oryza sativa (japonica
cultivar-group)] gi|34902378|ref|NP_912535.1| Putative
Zea mays retrotransposon Opie-2 [Oryza sativa (japonica
cultivar-group)]
Length = 2145
Score = 467 bits (1201), Expect = e-130
Identities = 227/392 (57%), Positives = 296/392 (74%)
Query: 17 SAFLNGYISEEVYVHQPPGFEDEKKPDHVFKLKKSLYGLKQAPRAWYERLSSFLLENEFV 76
SAFLNG I EEVYV QPPGFE+ K P+HVFKL+K+LYGLKQAPRAWYERL +FLL+N F
Sbjct: 1397 SAFLNGVIEEEVYVKQPPGFENPKFPNHVFKLEKALYGLKQAPRAWYERLKTFLLQNGFE 1456
Query: 77 RGKVDTTLFCKTYKDDILIVQIYVDDIIFGSANQSLCKEFSEMMQAEFEMSMMGELKYFL 136
G VD TLF D L+VQIYVDDIIFG ++ +L +FS++M EFEMSMMGEL +FL
Sbjct: 1457 MGAVDKTLFTLHSGIDFLLVQIYVDDIIFGGSSHALVAQFSDVMSREFEMSMMGELTFFL 1516
Query: 137 GIQVDQTPEGTYIHQSKYTKELLKKFNMLESTVAKTPMHPTCILEKEDKSGKVCQKLYRG 196
G+Q+ QT EG ++HQ+KY+KELLKKF+M + TPM T L ++ +V Q+ YR
Sbjct: 1517 GLQIKQTKEGIFVHQTKYSKELLKKFDMADCKPIATPMATTSSLGPDEDGEEVDQREYRS 1576
Query: 197 MIGSLLYLTASRPDILFSVHLCARFQSDPRETHLTAVKRILRYLKGTTNLGLMYKKTSEY 256
MIGSLLYLTASRPDI FSV LCARFQ+ PR +H AVKR+ RY+K T G+ Y +S
Sbjct: 1577 MIGSLLYLTASRPDIHFSVCLCARFQASPRTSHRQAVKRMFRYIKSTLEYGIWYSCSSAL 1636
Query: 257 KLSGYCDADYAGDRTERKSTSGNCQFLGSNLVSWASKRQSTIALSTAEAEYISAAICSTQ 316
+ + DAD+AG + +RKSTSG C FLG++LVSW+S++QS++A STAEAEY++AA +Q
Sbjct: 1637 SVRAFSDADFAGCKIDRKSTSGTCHFLGTSLVSWSSRKQSSVAQSTAEAEYVAAASACSQ 1696
Query: 317 MLWMKH*LEDYQILESNIPIYCDNTAAISLSKNPILHSRAKHIEVKYHFIRDYVQKGVLL 376
+LWM L+DY + S +P+ CDNT+AI+++KNP+ HSR KHIE++YHF+RD V+KG ++
Sbjct: 1697 VLWMISTLKDYGLSFSGVPLLCDNTSAINIAKNPVQHSRTKHIEIRYHFLRDNVEKGTIV 1756
Query: 377 LKFVDTDHQWADIFTKPLAEDRFNFILKNLNM 408
L+FV+++ Q ADIFTKPL RF F+ L +
Sbjct: 1757 LEFVESEKQLADIFTKPLDRSRFEFLRSELGV 1788
>ref|XP_474304.1| OSJNBb0004A17.2 [Oryza sativa (japonica cultivar-group)]
gi|32488723|emb|CAE03600.1| OSJNBb0004A17.2 [Oryza sativa
(japonica cultivar-group)]
Length = 1877
Score = 467 bits (1201), Expect = e-130
Identities = 227/392 (57%), Positives = 296/392 (74%)
Query: 17 SAFLNGYISEEVYVHQPPGFEDEKKPDHVFKLKKSLYGLKQAPRAWYERLSSFLLENEFV 76
SAFLNG I EEVYV QPPGFE+ K P+HVFKL+K+LYGLKQAPRAWYERL +FLL+N F
Sbjct: 1479 SAFLNGVIEEEVYVKQPPGFENPKFPNHVFKLEKALYGLKQAPRAWYERLKTFLLQNGFE 1538
Query: 77 RGKVDTTLFCKTYKDDILIVQIYVDDIIFGSANQSLCKEFSEMMQAEFEMSMMGELKYFL 136
G VD TLF D L+VQIYVDDIIFG ++ +L +FS++M EFEMSMMGEL +FL
Sbjct: 1539 MGAVDKTLFTLHSGIDFLLVQIYVDDIIFGGSSHALVAQFSDVMSREFEMSMMGELTFFL 1598
Query: 137 GIQVDQTPEGTYIHQSKYTKELLKKFNMLESTVAKTPMHPTCILEKEDKSGKVCQKLYRG 196
G+Q+ QT EG ++HQ+KY+KELLKKF+M + TPM T L ++ +V Q+ YR
Sbjct: 1599 GLQIKQTKEGIFVHQTKYSKELLKKFDMADCKPIATPMATTSSLGPDEDGEEVDQREYRS 1658
Query: 197 MIGSLLYLTASRPDILFSVHLCARFQSDPRETHLTAVKRILRYLKGTTNLGLMYKKTSEY 256
MIGSLLYLTASRPDI FSV LCARFQ+ PR +H AVKR+ RY+K T G+ Y +S
Sbjct: 1659 MIGSLLYLTASRPDIHFSVCLCARFQASPRTSHRQAVKRMFRYIKSTLEYGIWYSCSSAL 1718
Query: 257 KLSGYCDADYAGDRTERKSTSGNCQFLGSNLVSWASKRQSTIALSTAEAEYISAAICSTQ 316
+ + DAD+AG + +RKSTSG C FLG++LVSW+S++QS++A STAEAEY++AA +Q
Sbjct: 1719 SVRAFSDADFAGCKIDRKSTSGTCHFLGTSLVSWSSRKQSSVAQSTAEAEYVAAASACSQ 1778
Query: 317 MLWMKH*LEDYQILESNIPIYCDNTAAISLSKNPILHSRAKHIEVKYHFIRDYVQKGVLL 376
+LWM L+DY + S +P+ CDNT+AI+++KNP+ HSR KHIE++YHF+RD V+KG ++
Sbjct: 1779 VLWMISTLKDYGLSFSGVPLLCDNTSAINIAKNPVQHSRTKHIEIRYHFLRDNVEKGTIV 1838
Query: 377 LKFVDTDHQWADIFTKPLAEDRFNFILKNLNM 408
L+FV+++ Q ADIFTKPL RF F+ L +
Sbjct: 1839 LEFVESEKQLADIFTKPLDRSRFEFLRSELGV 1870
>gb|AAW57789.1| putative polyprotein [Oryza sativa (japonica cultivar-group)]
Length = 1799
Score = 465 bits (1196), Expect = e-129
Identities = 227/392 (57%), Positives = 294/392 (74%)
Query: 17 SAFLNGYISEEVYVHQPPGFEDEKKPDHVFKLKKSLYGLKQAPRAWYERLSSFLLENEFV 76
SAFLNG I EEVYV QPPGFE+ K P+HVFKL K+LYGLKQAPRAWYERL +FLL+N F
Sbjct: 1401 SAFLNGVIEEEVYVKQPPGFENPKFPNHVFKLDKALYGLKQAPRAWYERLKTFLLQNGFE 1460
Query: 77 RGKVDTTLFCKTYKDDILIVQIYVDDIIFGSANQSLCKEFSEMMQAEFEMSMMGELKYFL 136
G VD TLF D L+VQIYVDDIIFG ++ +L +F ++M EFEMSMMGEL +FL
Sbjct: 1461 MGAVDKTLFTLHSGIDFLLVQIYVDDIIFGGSSHALVAQFFDVMSREFEMSMMGELTFFL 1520
Query: 137 GIQVDQTPEGTYIHQSKYTKELLKKFNMLESTVAKTPMHPTCILEKEDKSGKVCQKLYRG 196
G+Q+ QT EG ++HQ+KY+KELLKKF+M + TPM T L ++ +V Q+ YR
Sbjct: 1521 GLQIKQTKEGIFVHQTKYSKELLKKFDMADCKPIATPMATTSSLGPDEDGEEVDQREYRS 1580
Query: 197 MIGSLLYLTASRPDILFSVHLCARFQSDPRETHLTAVKRILRYLKGTTNLGLMYKKTSEY 256
MIGSLLYLTASRPDI FSV LCARFQ+ PR +H AVKRI RY+K T G+ Y +S
Sbjct: 1581 MIGSLLYLTASRPDIHFSVCLCARFQASPRTSHRQAVKRIFRYIKSTLEYGIWYSCSSAL 1640
Query: 257 KLSGYCDADYAGDRTERKSTSGNCQFLGSNLVSWASKRQSTIALSTAEAEYISAAICSTQ 316
+ + DAD+AG + +RKSTSG C FLG++LVSW+S++QS++A STAEAEY++AA +Q
Sbjct: 1641 SVRAFSDADFAGCKIDRKSTSGTCHFLGTSLVSWSSRKQSSVAQSTAEAEYVAAASACSQ 1700
Query: 317 MLWMKH*LEDYQILESNIPIYCDNTAAISLSKNPILHSRAKHIEVKYHFIRDYVQKGVLL 376
+LWM L+DY + S +P+ CDNT+AI+++KNP+ HSR KHIE++YHF+RD V+KG ++
Sbjct: 1701 VLWMISTLKDYGLSFSGVPLLCDNTSAINIAKNPVQHSRTKHIEIRYHFLRDNVEKGTIV 1760
Query: 377 LKFVDTDHQWADIFTKPLAEDRFNFILKNLNM 408
L+FV+++ Q ADIFTKPL RF F+ L +
Sbjct: 1761 LEFVESEKQLADIFTKPLDRSRFEFLRSELGV 1792
>gb|AAC49502.1| Pol [Zea mays] gi|7489803|pir||T04112 pol protein homolog - maize
retrotransposon Opie-2
Length = 1068
Score = 464 bits (1194), Expect = e-129
Identities = 232/392 (59%), Positives = 285/392 (72%)
Query: 17 SAFLNGYISEEVYVHQPPGFEDEKKPDHVFKLKKSLYGLKQAPRAWYERLSSFLLENEFV 76
SAFLNG I EEVYV QPPGFEDE+ PDHV KL K+LYGLKQAPRAWYE L FL+ N F
Sbjct: 670 SAFLNGPIKEEVYVEQPPGFEDERYPDHVCKLSKALYGLKQAPRAWYECLRDFLIANAFK 729
Query: 77 RGKVDTTLFCKTYKDDILIVQIYVDDIIFGSANQSLCKEFSEMMQAEFEMSMMGELKYFL 136
GK D TLF KT D+ + QIYVDDIIFGS NQ C+EFS +M +FEMSMMGEL YFL
Sbjct: 730 VGKADPTLFTKTCDGDLFVCQIYVDDIIFGSTNQKSCEEFSRVMTQKFEMSMMGELNYFL 789
Query: 137 GIQVDQTPEGTYIHQSKYTKELLKKFNMLESTVAKTPMHPTCILEKEDKSGKVCQKLYRG 196
G QV Q +GT+I Q+KYT++LLK+F M ++ AKTPM + V QK YR
Sbjct: 790 GFQVKQLKDGTFISQTKYTQDLLKRFGMKDAKPAKTPMGTDGHTDLNKGGKSVDQKAYRS 849
Query: 197 MIGSLLYLTASRPDILFSVHLCARFQSDPRETHLTAVKRILRYLKGTTNLGLMYKKTSEY 256
MIGSLLYL ASRPDI+ SV +CARFQSDP+E HL AVKRILRYL T GL Y K S +
Sbjct: 850 MIGSLLYLCASRPDIMLSVCMCARFQSDPKECHLVAVKRILRYLVATPCFGLWYPKGSTF 909
Query: 257 KLSGYCDADYAGDRTERKSTSGNCQFLGSNLVSWASKRQSTIALSTAEAEYISAAICSTQ 316
L GY D+DYAG + +RKSTSG CQFLG +LVSW SK+Q+++ALSTAEAEY++A C Q
Sbjct: 910 DLVGYSDSDYAGCKVDRKSTSGTCQFLGRSLVSWNSKKQTSVALSTAEAEYVAAGQCCAQ 969
Query: 317 MLWMKH*LEDYQILESNIPIYCDNTAAISLSKNPILHSRAKHIEVKYHFIRDYVQKGVLL 376
+LWM+ L D+ S +P+ CDN +AI +++NP+ HSR KHI++++HF+RD+ QKG +
Sbjct: 970 LLWMRQTLRDFGYNLSKVPLLCDNESAIRMAENPVEHSRTKHIDIRHHFLRDHQQKGDIE 1029
Query: 377 LKFVDTDHQWADIFTKPLAEDRFNFILKNLNM 408
+ V T++Q ADIFTKPL E F + LN+
Sbjct: 1030 VFHVSTENQLADIFTKPLDEKTFCRLRSELNV 1061
>gb|AAL66759.1| putative pol protein [Zea mays]
Length = 1657
Score = 462 bits (1190), Expect = e-129
Identities = 232/392 (59%), Positives = 284/392 (72%)
Query: 17 SAFLNGYISEEVYVHQPPGFEDEKKPDHVFKLKKSLYGLKQAPRAWYERLSSFLLENEFV 76
SAFLNG I EEVYV QPPGFEDE+ PDHV KL K+LYGLKQAPRAWYE L FLL N F
Sbjct: 1259 SAFLNGPIKEEVYVEQPPGFEDERYPDHVCKLSKALYGLKQAPRAWYECLRDFLLANAFK 1318
Query: 77 RGKVDTTLFCKTYKDDILIVQIYVDDIIFGSANQSLCKEFSEMMQAEFEMSMMGELKYFL 136
GK D TLF KT D+ + QIYVDDIIFGS NQ C+EFS +M +FEMSMMGEL YFL
Sbjct: 1319 VGKADPTLFTKTCDGDLFVCQIYVDDIIFGSTNQKSCEEFSRVMTQKFEMSMMGELNYFL 1378
Query: 137 GIQVDQTPEGTYIHQSKYTKELLKKFNMLESTVAKTPMHPTCILEKEDKSGKVCQKLYRG 196
G QV Q +GT+I Q+KYT++LLK+F M ++ AKTPM + V QK YR
Sbjct: 1379 GFQVKQLKDGTFISQTKYTQDLLKRFGMKDAKPAKTPMGTDGHTDLNKGGKSVDQKAYRS 1438
Query: 197 MIGSLLYLTASRPDILFSVHLCARFQSDPRETHLTAVKRILRYLKGTTNLGLMYKKTSEY 256
MIGSLLYL ASRPDI+ SV +CARFQSDP+E HL AVKRILRYL T GL Y K S +
Sbjct: 1439 MIGSLLYLCASRPDIMLSVCMCARFQSDPKECHLVAVKRILRYLVATPCFGLWYPKGSTF 1498
Query: 257 KLSGYCDADYAGDRTERKSTSGNCQFLGSNLVSWASKRQSTIALSTAEAEYISAAICSTQ 316
L GY D+DYAG + +RKSTSG CQFLG +LVSW SK+Q+++ALSTAEAEY++A C Q
Sbjct: 1499 DLVGYSDSDYAGCKVDRKSTSGTCQFLGRSLVSWNSKKQTSVALSTAEAEYVAAGQCCAQ 1558
Query: 317 MLWMKH*LEDYQILESNIPIYCDNTAAISLSKNPILHSRAKHIEVKYHFIRDYVQKGVLL 376
+LWM+ L D+ S +P+ CDN + I +++NP+ HSR KHI++++HF+RD+ QKG +
Sbjct: 1559 LLWMRQTLRDFGYNLSKVPLLCDNESDIRMAENPVEHSRTKHIDIRHHFLRDHQQKGDIE 1618
Query: 377 LKFVDTDHQWADIFTKPLAEDRFNFILKNLNM 408
+ V T++Q ADIFTKPL E F + LN+
Sbjct: 1619 VFHVSTENQLADIFTKPLDEKTFCRLRSELNV 1650
>gb|AAL75483.1| putative pol protein [Zea mays]
Length = 1553
Score = 462 bits (1188), Expect = e-128
Identities = 227/392 (57%), Positives = 286/392 (72%)
Query: 17 SAFLNGYISEEVYVHQPPGFEDEKKPDHVFKLKKSLYGLKQAPRAWYERLSSFLLENEFV 76
SAFLNG I EEVYV QPPGFEDE+ PDHV KL K+LYGL QAPRAWYE L +FL+ N F
Sbjct: 1155 SAFLNGPIKEEVYVEQPPGFEDERYPDHVCKLSKALYGLMQAPRAWYECLRNFLIANAFK 1214
Query: 77 RGKVDTTLFCKTYKDDILIVQIYVDDIIFGSANQSLCKEFSEMMQAEFEMSMMGELKYFL 136
GK D TLF KT D+ + QIYVDDIIFGS NQ C+EFS +M +FEM MMGEL YFL
Sbjct: 1215 VGKADPTLFTKTCNGDLFVCQIYVDDIIFGSTNQKSCEEFSRVMTQKFEMPMMGELSYFL 1274
Query: 137 GIQVDQTPEGTYIHQSKYTKELLKKFNMLESTVAKTPMHPTCILEKEDKSGKVCQKLYRG 196
G QV Q +GT+I Q+KYT++L+K+F M ++ AKTPM ++ V QK YR
Sbjct: 1275 GFQVKQLKDGTFISQTKYTQDLIKRFGMKDAKPAKTPMGTDGHIDLNKGGKSVDQKAYRS 1334
Query: 197 MIGSLLYLTASRPDILFSVHLCARFQSDPRETHLTAVKRILRYLKGTTNLGLMYKKTSEY 256
MIGSLLYL ASRPDI+ SV +CARFQSDPRE HL AVKRILRYL T G+ Y K S +
Sbjct: 1335 MIGSLLYLCASRPDIMLSVCMCARFQSDPRECHLVAVKRILRYLVATPCFGIWYPKGSTF 1394
Query: 257 KLSGYCDADYAGDRTERKSTSGNCQFLGSNLVSWASKRQSTIALSTAEAEYISAAICSTQ 316
L GY D+DYAG + +RKSTSG CQFLG +LVSW+SK+Q+++ALSTAEAEY++A C Q
Sbjct: 1395 DLIGYSDSDYAGCKVDRKSTSGTCQFLGRSLVSWSSKKQTSVALSTAEAEYVAAGQCCAQ 1454
Query: 317 MLWMKH*LEDYQILESNIPIYCDNTAAISLSKNPILHSRAKHIEVKYHFIRDYVQKGVLL 376
+LWM+ L D+ + +P+ CDN +AI ++ NP+ HSR KHI++++HF+RD+ QKG +
Sbjct: 1455 LLWMRQTLRDFGYNLNKVPLLCDNESAIRMADNPVEHSRTKHIDIRHHFLRDHQQKGDIE 1514
Query: 377 LKFVDTDHQWADIFTKPLAEDRFNFILKNLNM 408
+ +V T++Q ADIFTKPL E F + +N+
Sbjct: 1515 VFYVSTENQLADIFTKPLDESTFCRLRSEINV 1546
>gb|AAP53179.1| putative retroelement [Oryza sativa (japonica cultivar-group)]
gi|37533180|ref|NP_920892.1| putative retroelement [Oryza
sativa (japonica cultivar-group)]
gi|22748369|gb|AAN05371.1| Putative retroelement [Oryza
sativa (japonica cultivar-group)]
Length = 1299
Score = 460 bits (1184), Expect = e-128
Identities = 226/392 (57%), Positives = 289/392 (73%)
Query: 17 SAFLNGYISEEVYVHQPPGFEDEKKPDHVFKLKKSLYGLKQAPRAWYERLSSFLLENEFV 76
SAFLNG I+E V+V QPPGFED K +HV KL K LYGLKQAPRAWYERL FLL +F
Sbjct: 901 SAFLNGEIAELVFVEQPPGFEDPKNSNHVCKLSKGLYGLKQAPRAWYERLRDFLLSKDFK 960
Query: 77 RGKVDTTLFCKTYKDDILIVQIYVDDIIFGSANQSLCKEFSEMMQAEFEMSMMGELKYFL 136
GKVDTTLF K DD + QIYVDDIIFGS N+ CKEF +MM EFEMSM+GEL +FL
Sbjct: 961 IGKVDTTLFTKIIGDDFFVCQIYVDDIIFGSTNEVFCKEFGDMMSREFEMSMIGELSFFL 1020
Query: 137 GIQVDQTPEGTYIHQSKYTKELLKKFNMLESTVAKTPMHPTCILEKEDKSGKVCQKLYRG 196
+Q+ Q +GT++ Q+KY K+LLK+F + ++ KTPM L+ ++ V KLY
Sbjct: 1021 RLQIKQLKDGTFLSQTKYIKDLLKRFGLEDAKPIKTPMVTNGHLDLDEGGKPVDLKLYHS 1080
Query: 197 MIGSLLYLTASRPDILFSVHLCARFQSDPRETHLTAVKRILRYLKGTTNLGLMYKKTSEY 256
MIGSLLYLTASRPDI+FSV +CARFQ P+E HL AVKRILRYLK ++ +GL Y K +++
Sbjct: 1081 MIGSLLYLTASRPDIMFSVCMCARFQVAPKECHLVAVKRILRYLKHSSIIGLWYPKGAKF 1140
Query: 257 KLSGYCDADYAGDRTERKSTSGNCQFLGSNLVSWASKRQSTIALSTAEAEYISAAICSTQ 316
KL GY D+DYAG + +RKSTSG+CQ LG +LVSW+SK+Q+++ALSTAEAEY+SA C Q
Sbjct: 1141 KLVGYSDSDYAGCKVDRKSTSGSCQMLGRSLVSWSSKKQNSVALSTAEAEYVSAGSCCAQ 1200
Query: 317 MLWMKH*LEDYQILESNIPIYCDNTAAISLSKNPILHSRAKHIEVKYHFIRDYVQKGVLL 376
+LWMK L DY I + P+ CDN +AI ++ NP+ HSR KHI++++HF+RD+V K ++
Sbjct: 1201 LLWMKQILLDYGISFTKTPLLCDNDSAIKIANNPVQHSRTKHIDIRHHFLRDHVVKSDIV 1260
Query: 377 LKFVDTDHQWADIFTKPLAEDRFNFILKNLNM 408
+ + T+ Q ADIFTKPL E RF + LN+
Sbjct: 1261 ISHIRTEDQLADIFTKPLDETRFCKLRNELNV 1292
>gb|AAW57784.1| putative polyprotein [Oryza sativa (japonica cultivar-group)]
Length = 1411
Score = 460 bits (1183), Expect = e-128
Identities = 223/392 (56%), Positives = 291/392 (73%)
Query: 17 SAFLNGYISEEVYVHQPPGFEDEKKPDHVFKLKKSLYGLKQAPRAWYERLSSFLLENEFV 76
S FLNG I+E V+V QPPGFED K P+HV+KL K+LYGLKQAPRAWYERL FLL +F
Sbjct: 1013 SVFLNGEIAELVFVEQPPGFEDPKNPNHVYKLSKALYGLKQAPRAWYERLRDFLLSKDFK 1072
Query: 77 RGKVDTTLFCKTYKDDILIVQIYVDDIIFGSANQSLCKEFSEMMQAEFEMSMMGELKYFL 136
GKVDTTLF K DD + QIYVD IIFGS N+ CKEF +MM EF+MSM+GEL +FL
Sbjct: 1073 IGKVDTTLFTKIIGDDFFVCQIYVDGIIFGSTNEVFCKEFGDMMSREFDMSMIGELSFFL 1132
Query: 137 GIQVDQTPEGTYIHQSKYTKELLKKFNMLESTVAKTPMHPTCILEKEDKSGKVCQKLYRG 196
G+Q+ Q +GT++ Q+KY K+LLK+F + ++ KTPM L+ ++ V KLYR
Sbjct: 1133 GLQIKQLKDGTFVSQTKYIKDLLKRFGLEDAKPIKTPMATNGHLDLDEGGKPVDLKLYRS 1192
Query: 197 MIGSLLYLTASRPDILFSVHLCARFQSDPRETHLTAVKRILRYLKGTTNLGLMYKKTSEY 256
MIGSLLYLTASRPDI+FSV +CARFQ+ P+E HL AVKRILRYLK ++N+GL Y K +++
Sbjct: 1193 MIGSLLYLTASRPDIMFSVCMCARFQAAPKECHLVAVKRILRYLKHSSNIGLWYPKGAKF 1252
Query: 257 KLSGYCDADYAGDRTERKSTSGNCQFLGSNLVSWASKRQSTIALSTAEAEYISAAICSTQ 316
KL GY +DYA + +RKSTSG+CQ LG +LVSW+SK+Q+++ALSTAEA+Y+SA C Q
Sbjct: 1253 KLVGYSYSDYASCKVDRKSTSGSCQMLGRSLVSWSSKKQNSVALSTAEAKYVSAGSCCAQ 1312
Query: 317 MLWMKH*LEDYQILESNIPIYCDNTAAISLSKNPILHSRAKHIEVKYHFIRDYVQKGVLL 376
+LWMK L DY I + P+ CDN +AI ++ NP+ HSR KHI++++HF+RD+V K ++
Sbjct: 1313 LLWMKQTLLDYGISFTKTPLLCDNDSAIKIANNPVQHSRTKHIDIRHHFLRDHVAKCDIV 1372
Query: 377 LKFVDTDHQWADIFTKPLAEDRFNFILKNLNM 408
+ + T+ Q ADIFTKPL E F + LN+
Sbjct: 1373 ISHIRTEDQLADIFTKPLDETCFYKLRNELNV 1404
>ref|NP_912905.1| unnamed protein product [Oryza sativa (japonica cultivar-group)]
Length = 940
Score = 459 bits (1181), Expect = e-128
Identities = 228/392 (58%), Positives = 289/392 (73%)
Query: 17 SAFLNGYISEEVYVHQPPGFEDEKKPDHVFKLKKSLYGLKQAPRAWYERLSSFLLENEFV 76
SAFLNG I+E VYV QPPGF+D K P+HV+KL K+LY LKQAPRAWYE L +FL++N F
Sbjct: 542 SAFLNGLINELVYVEQPPGFKDPKYPNHVYKLHKALYELKQAPRAWYECLRNFLVKNGFE 601
Query: 77 RGKVDTTLFCKTYKDDILIVQIYVDDIIFGSANQSLCKEFSEMMQAEFEMSMMGELKYFL 136
GK D+TLF K + +DI + QIYVDDIIFGS N+S +EFS MM FEMSMMGELK+FL
Sbjct: 602 IGKADSTLFTKRHDNDIFVCQIYVDDIIFGSTNKSFSEEFSRMMTKRFEMSMMGELKFFL 661
Query: 137 GIQVDQTPEGTYIHQSKYTKELLKKFNMLESTVAKTPMHPTCILEKEDKSGKVCQKLYRG 196
G+Q+ Q EGT+I Q+KY K++LKKF M + TPM L+ ++ V QK+YR
Sbjct: 662 GLQIKQLKEGTFICQTKYLKDMLKKFGMENAKPIHTPMPSNGHLDLNEQGKDVDQKVYRS 721
Query: 197 MIGSLLYLTASRPDILFSVHLCARFQSDPRETHLTAVKRILRYLKGTTNLGLMYKKTSEY 256
+IGSLLYL ASRPDI+ SV +CARFQ+ P+E HL AVKRILRYL T NLGL Y K + +
Sbjct: 722 IIGSLLYLCASRPDIMLSVCMCARFQAAPKECHLVAVKRILRYLVHTPNLGLWYPKGARF 781
Query: 257 KLSGYCDADYAGDRTERKSTSGNCQFLGSNLVSWASKRQSTIALSTAEAEYISAAICSTQ 316
L GY DADYAG + +RKSTSG CQFLG +LVSW+SK+Q+++ALSTAEAEYIS C Q
Sbjct: 782 DLIGYADADYAGCKVDRKSTSGTCQFLGRSLVSWSSKKQNSVALSTAEAEYISTGSCCAQ 841
Query: 317 MLWMKH*LEDYQILESNIPIYCDNTAAISLSKNPILHSRAKHIEVKYHFIRDYVQKGVLL 376
++WMK L DY + S IP+ CDN +AI ++ NP+ HSR KHI++++HF+RD+ +G +
Sbjct: 842 LIWMKQTLRDYGLNVSKIPLLCDNESAIKIANNPVQHSRTKHIDIRHHFLRDHSTRGDID 901
Query: 377 LKFVDTDHQWADIFTKPLAEDRFNFILKNLNM 408
++ V D Q ADIFTKPL E RF + LN+
Sbjct: 902 IQHVRIDKQLADIFTKPLDEARFCELRSELNI 933
>gb|AAX96565.1| retrotransposon protein, putative, Ty1-copia sub-class [Oryza
sativa (japonica cultivar-group)]
Length = 709
Score = 458 bits (1178), Expect = e-127
Identities = 219/392 (55%), Positives = 294/392 (74%)
Query: 17 SAFLNGYISEEVYVHQPPGFEDEKKPDHVFKLKKSLYGLKQAPRAWYERLSSFLLENEFV 76
SAFLNG+I EEVY+ QPPGFE+ P+HVFKL K+ YGLKQAPRAWY+RL +FLL F
Sbjct: 311 SAFLNGFIQEEVYIKQPPGFENPDFPNHVFKLSKAFYGLKQAPRAWYDRLKNFLLAKGFT 370
Query: 77 RGKVDTTLFCKTYKDDILIVQIYVDDIIFGSANQSLCKEFSEMMQAEFEMSMMGELKYFL 136
GK D TLF + D+ L VQIYVDDIIFG + +L +F+E M+ EFEMSMMGEL YFL
Sbjct: 371 MGKFDKTLFVLKHGDNQLFVQIYVDDIIFGCSIHALVVDFAETMRREFEMSMMGELSYFL 430
Query: 137 GIQVDQTPEGTYIHQSKYTKELLKKFNMLESTVAKTPMHPTCILEKEDKSGKVCQKLYRG 196
G+Q+ QTP+GT++HQ+KYTK+LL++F M TP+ T +L+ ++ V QK YR
Sbjct: 431 GLQIKQTPQGTFVHQTKYTKDLLRRFKMENCKPISTPIGSTAVLDPDEDGKAVDQKEYRS 490
Query: 197 MIGSLLYLTASRPDILFSVHLCARFQSDPRETHLTAVKRILRYLKGTTNLGLMYKKTSEY 256
MIGSLLYLTASRPDI F+V L ARFQ+ PR +H AVKRI+RYL T G+ Y +S
Sbjct: 491 MIGSLLYLTASRPDIQFAVCLRARFQASPRASHRQAVKRIMRYLNHTLEFGIWYSTSSSI 550
Query: 257 KLSGYCDADYAGDRTERKSTSGNCQFLGSNLVSWASKRQSTIALSTAEAEYISAAICSTQ 316
LSGY DAD+ G R +RKSTSG C FLG++L++W+S++QS++A STAE+EY++AA C +Q
Sbjct: 551 CLSGYSDADFGGCRIDRKSTSGTCHFLGTSLIAWSSRKQSSVAQSTAESEYVAAASCCSQ 610
Query: 317 MLWMKH*LEDYQILESNIPIYCDNTAAISLSKNPILHSRAKHIEVKYHFIRDYVQKGVLL 376
+LW+ L+DY + + ++CDNT+AI+++KNP+ HSR KHI++++HF+RD+V+KG +
Sbjct: 611 ILWLLSTLKDYGLTFEKVHLFCDNTSAINIAKNPVQHSRTKHIDIRFHFLRDHVEKGDVE 670
Query: 377 LKFVDTDHQWADIFTKPLAEDRFNFILKNLNM 408
L+F+DT+ Q ADIFTKPL +RF F+ L +
Sbjct: 671 LQFLDTNLQIADIFTKPLDSNRFAFLRGELGI 702
>emb|CAE04884.2| OSJNBa0042I15.6 [Oryza sativa (japonica cultivar-group)]
Length = 1510
Score = 457 bits (1176), Expect = e-127
Identities = 230/406 (56%), Positives = 291/406 (71%), Gaps = 1/406 (0%)
Query: 7 DYLSWRLRM*SAFLNGYISEEVYVHQPPGFEDEKKPDHVFKLKKSLYGLKQAPRAWYERL 66
D+ +++ + SAFLNG ISE VYV QPPGFED K P+HV+KL K+LYGLKQAPRAWYE L
Sbjct: 1097 DFRLFQMDVKSAFLNGPISELVYVEQPPGFEDPKLPNHVYKLHKALYGLKQAPRAWYECL 1156
Query: 67 SSFLLENEFVRGKVDTTLFCKTYKDDILIVQIYVDDIIFGSANQSLCKEFSEMMQAEFEM 126
FLL+N F G DTTLF K +K D+ I QIYVDDIIFGS N S C+EFS +M FEM
Sbjct: 1157 RDFLLKNGFEIGNADTTLFTKKFKSDLFICQIYVDDIIFGSTNASFCEEFSSIMTKRFEM 1216
Query: 127 SMMGELKYFLGIQVDQTPEGTYIHQSKYTKELLKKFNMLESTVAKTPMHPTCILEKEDKS 186
SMMGEL +FL +QV Q EGT+I Q+KY K++LKKF M ++ KTPM L+ +D
Sbjct: 1217 SMMGELTFFLWLQVKQAQEGTFISQTKYVKDILKKFGMEDAKPIKTPMPTNGHLDLDDNG 1276
Query: 187 GKVCQKLYRGMIGSLLYLTASRPDILFSVHLCARFQSDPRETHLTAVKRILRYLKGTTNL 246
V QK+YR MIGSLLYL ASRPDI+ SV +CARFQ++P+E HL AVKRI RYL T NL
Sbjct: 1277 KCVDQKVYRSMIGSLLYLCASRPDIMLSVCMCARFQAEPKECHLIAVKRIQRYLVHTPNL 1336
Query: 247 GLMYKKTSEYKLSGYCDADYAGDRTERKSTSGNCQFLGSNLVSWASKRQSTIALSTAEAE 306
GL Y K +++L GY D+DYAG + +RKS +G CQFLG +LVSW K+Q++I LST EAE
Sbjct: 1337 GLWYPKGCDFELLGYSDSDYAGCKVDRKSITGTCQFLGPSLVSWFPKKQNSIVLSTTEAE 1396
Query: 307 YISAAICSTQMLWMKH*LEDYQILESNIPIYCDNTAAISLSKNPILHSRAKHIEVKYHFI 366
Y++A C Q+LWMK L+D+ + P+ CDN +AI ++ NP+ HS+ KHI++ +HF+
Sbjct: 1397 YVAAGSCCAQLLWMKQTLKDFGYNFTKTPLLCDNESAIKIANNPVQHSKTKHIDIHHHFL 1456
Query: 367 RDYVQKGVLLLKFVDTDHQWADIFTKPLAEDRFNFILKNLN-MDFC 411
RD+ KG + L V T+ Q ADIFTKPL E RF + LN +D C
Sbjct: 1457 RDHETKGDICLTHVRTETQLADIFTKPLDEKRFCELRSELNFLDSC 1502
>ref|XP_470878.1| putative gag-pol polyprotein [Oryza sativa (japonica cultivar-group)]
gi|30017518|gb|AAP12940.1| transposon protein, putative,
CACTA, En/Spm sub-class [Oryza sativa (japonica
cultivar-group)]
Length = 1975
Score = 455 bits (1171), Expect = e-126
Identities = 222/393 (56%), Positives = 291/393 (73%), Gaps = 1/393 (0%)
Query: 17 SAFLNGYISEEVYVHQPPGFEDEKKPDHVFKLKKSLYGLKQAPRAWYERLSSFLLENEFV 76
SAFLNG I+E V+V QPPGFED K P+HV+KL K+LYGLK APRAWYERL FLL +F
Sbjct: 1576 SAFLNGEIAELVFVEQPPGFEDPKNPNHVYKLSKALYGLKPAPRAWYERLRDFLLPKDFK 1635
Query: 77 RGKVDTTLFCKTYKDDILIVQIYVDDIIFGSANQSLCKEFSEMMQAEFEMSMMGELKYFL 136
GKVDTTL K DD ++ QIYVDDIIFGS N+ CKEF +MM EFEMSM+GEL +FL
Sbjct: 1636 IGKVDTTLSTKIIDDDFVVCQIYVDDIIFGSTNEVFCKEFGDMMSREFEMSMVGELSFFL 1695
Query: 137 GIQVDQTPEGTYIHQSKYTKELLKKFNMLESTVAKTPMHPTCILEKEDKSGKVCQKLYRG 196
G+Q+ Q +GT++ Q+KY K+LLK+F + ++ KTPM L+ ++ V KLY
Sbjct: 1696 GLQIKQLKDGTFVSQTKYIKDLLKRFGLEDAKPIKTPMATNGHLDLDEGGKPVDLKLYHS 1755
Query: 197 MIGSLLYLTASRPDILFSVHLCARFQSDPRETHLTAVKRILRYLKGTTNLGLMYKKTSEY 256
MIGSLLYLTASRPDI+FSV +CARFQ+ P++ HL AVKRILRYLK ++ +GL Y K +++
Sbjct: 1756 MIGSLLYLTASRPDIMFSVCMCARFQAAPKKCHLVAVKRILRYLKHSSTIGLWYPKGAKF 1815
Query: 257 KLSGYCDADYAGDRTERKSTSGNCQFLGSNLVSWASKRQSTIALSTAEAEYISAAICSTQ 316
K+ Y D DYA + +RKSTSG+CQ LG +LVSW+SK+Q+++ALSTAEAEY+SA C Q
Sbjct: 1816 KIVSYSDLDYAVCKVDRKSTSGSCQMLGRSLVSWSSKKQNSVALSTAEAEYVSAGSCCAQ 1875
Query: 317 MLWMKH*LEDYQILESNIPIYCDNTAAISLSKNPILHSRAKHIEVKYHFIRDY-VQKGVL 375
+LWMK L DY I + P+ CDN +AI ++ NP+ HSR KHI+++YHF++D+ V K +
Sbjct: 1876 LLWMKQTLLDYGISFTKTPLLCDNDSAIKIANNPVQHSRTKHIDIRYHFLKDHVVAKSDI 1935
Query: 376 LLKFVDTDHQWADIFTKPLAEDRFNFILKNLNM 408
++ + T++Q ADIFTKPL E RF + LN+
Sbjct: 1936 VISHIRTENQLADIFTKPLDETRFCKLRNELNV 1968
>gb|AAP51900.1| putative Zea mays retrotransposon Opie-2 [Oryza sativa (japonica
cultivar-group)] gi|37530622|ref|NP_919613.1| putative
Zea mays retrotransposon Opie-2 [Oryza sativa (japonica
cultivar-group)] gi|20042883|gb|AAM08711.1| Putative Zea
mays retrotransposon Opie-2 [Oryza sativa]
gi|16924045|gb|AAL31657.1| Putative Zea mays
retrotransposon Opie-2 [Oryza sativa]
Length = 494
Score = 454 bits (1169), Expect = e-126
Identities = 218/392 (55%), Positives = 290/392 (73%)
Query: 17 SAFLNGYISEEVYVHQPPGFEDEKKPDHVFKLKKSLYGLKQAPRAWYERLSSFLLENEFV 76
SAFLNG+I EEVYV QPPGFE+ P+HVF+L K+LYGLKQAPRAWY+R +FLL F
Sbjct: 96 SAFLNGFIQEEVYVKQPPGFENPDFPNHVFELSKALYGLKQAPRAWYDRFKNFLLAKGFT 155
Query: 77 RGKVDTTLFCKTYKDDILIVQIYVDDIIFGSANQSLCKEFSEMMQAEFEMSMMGELKYFL 136
GKVD LF + D+ L VQIYVDDIIF ++ +L EF+E M+ EFEMSMMGEL YFL
Sbjct: 156 MGKVDKMLFVLKHGDNQLFVQIYVDDIIFDCSSHALVVEFAETMRREFEMSMMGELSYFL 215
Query: 137 GIQVDQTPEGTYIHQSKYTKELLKKFNMLESTVAKTPMHPTCILEKEDKSGKVCQKLYRG 196
G+Q+ QTP+GT++HQ+KYTK+LL+ F M TP+ +L+ ++ V QK YR
Sbjct: 216 GLQIKQTPQGTFVHQTKYTKDLLRWFKMENCKPISTPIGSIAVLDPDEDGEAVNQKEYRS 275
Query: 197 MIGSLLYLTASRPDILFSVHLCARFQSDPRETHLTAVKRILRYLKGTTNLGLMYKKTSEY 256
MIGSLLYLTA RPDI F V LCARFQ+ PR +H AVKRI+RYL T G+ Y +S
Sbjct: 276 MIGSLLYLTAYRPDIQFVVCLCARFQASPRASHRQAVKRIMRYLNHTLEFGIWYSTSSSI 335
Query: 257 KLSGYCDADYAGDRTERKSTSGNCQFLGSNLVSWASKRQSTIALSTAEAEYISAAICSTQ 316
LSGY DAD+ G R +RKSTSG C FLG++L++W+S++QS++A STAE+EY++AA C +Q
Sbjct: 336 CLSGYSDADFGGCRIDRKSTSGTCHFLGTSLIAWSSRKQSSVAQSTAESEYVAAASCCSQ 395
Query: 317 MLWMKH*LEDYQILESNIPIYCDNTAAISLSKNPILHSRAKHIEVKYHFIRDYVQKGVLL 376
+LW+ L+DY + +P++CDNT+AI+++KNP+ HS KHI++++HF+RD+V+KG +
Sbjct: 396 ILWLLSTLKDYGLTFEKVPLFCDNTSAINIAKNPVQHSHTKHIDIRFHFLRDHVEKGDVE 455
Query: 377 LKFVDTDHQWADIFTKPLAEDRFNFILKNLNM 408
L+F+DT Q ADIFTKPL +RF F+ L +
Sbjct: 456 LQFLDTKLQLADIFTKPLDSNRFAFLRGELGI 487
Database: nr
Posted date: Jul 5, 2005 12:34 AM
Number of letters in database: 863,360,394
Number of sequences in database: 2,540,612
Lambda K H
0.324 0.138 0.415
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 692,033,402
Number of Sequences: 2540612
Number of extensions: 27938119
Number of successful extensions: 71856
Number of sequences better than 10.0: 1626
Number of HSP's better than 10.0 without gapping: 1598
Number of HSP's successfully gapped in prelim test: 28
Number of HSP's that attempted gapping in prelim test: 68020
Number of HSP's gapped (non-prelim): 1963
length of query: 413
length of database: 863,360,394
effective HSP length: 130
effective length of query: 283
effective length of database: 533,080,834
effective search space: 150861876022
effective search space used: 150861876022
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 76 (33.9 bits)
Lotus: description of TM0201.13