BLASTP 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= TM0199.9
         (56 letters)

Database: nr 
           2,540,612 sequences; 863,360,394 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

gb|AAF20146.1| vacuolar ATP synthase subunit C [Arabidopsis thal...    71  7e-12
ref|XP_476024.1| putative vacuolar ATP synthase subunit C [Oryza...    60  2e-08
gb|AAO72561.1| putative vacuolar ATP synthase subunit C [Oryza s...    60  2e-08
emb|CAB65127.1| vacuolar H+-ATPase subunit C [Hordeum vulgare su...    51  7e-06
emb|CAD63217.1| ATPase of the PilT family [Lactobacillus plantar...    32  5.9

>gb|AAF20146.1| vacuolar ATP synthase subunit C [Arabidopsis thaliana]
          gi|12248023|gb|AAG50103.1| putative vacuolar ATP
          synthase subunit C [Arabidopsis thaliana]
          gi|20259972|gb|AAM13333.1| vacuolar ATP sythase subunit
          C [Arabidopsis thaliana] gi|8698731|gb|AAF78489.1|
          Identical to vacuolar ATP sythase subunit C (DET3) from
          Arabidopsis thaliana gb|AF208261.  ESTs gb|AA067533,
          gb|Z37481, gb|AA721838, gb|Z37180, gb|T21206 come from
          this gene gi|18391442|ref|NP_563916.1| vacuolar ATP
          synthase subunit C (VATC) / V-ATPase C subunit /
          vacuolar proton pump C subunit (DET3) [Arabidopsis
          thaliana] gi|16649005|gb|AAL24354.1| Identical to
          vacuolar ATP sythase subunit C (DET3) [Arabidopsis
          thaliana] gi|25529228|pir||T52300 H+-exporting ATPase
          (EC 3.6.3.6) chain C, vacuolar [validated] -
          Arabidopsis thaliana gi|12585488|sp|Q9SDS7|VATC_ARATH
          Vacuolar ATP synthase subunit C (V-ATPase C subunit)
          (Vacuolar proton pump C subunit)
          Length = 375

 Score = 71.2 bits (173), Expect = 7e-12
 Identities = 30/38 (78%), Positives = 35/38 (91%)

Query: 5  WWVVSLPVHNSASELWNRLQQNVSKHSFDTPLYRFNIP 42
          +WVVSLPV +SAS LWNRLQ+ +SKHSFDTP+YRFNIP
Sbjct: 5  YWVVSLPVKDSASSLWNRLQEQISKHSFDTPVYRFNIP 42


>ref|XP_476024.1| putative vacuolar ATP synthase subunit C [Oryza sativa (japonica
          cultivar-group)] gi|48475236|gb|AAT44305.1| putative
          vacuolar ATP synthase subunit C [Oryza sativa (japonica
          cultivar-group)]
          Length = 377

 Score = 60.1 bits (144), Expect = 2e-08
 Identities = 26/44 (59%), Positives = 35/44 (79%), Gaps = 3/44 (6%)

Query: 2  AVVWWVVSLPVH---NSASELWNRLQQNVSKHSFDTPLYRFNIP 42
          A  +W+VSLPV    ++A+ LW RLQ ++S+HSFDTPLYRFN+P
Sbjct: 2  ATRYWIVSLPVQTPGSTANSLWARLQDSISRHSFDTPLYRFNVP 45


>gb|AAO72561.1| putative vacuolar ATP synthase subunit C [Oryza sativa (japonica
          cultivar-group)]
          Length = 408

 Score = 60.1 bits (144), Expect = 2e-08
 Identities = 26/44 (59%), Positives = 35/44 (79%), Gaps = 3/44 (6%)

Query: 2  AVVWWVVSLPVH---NSASELWNRLQQNVSKHSFDTPLYRFNIP 42
          A  +W+VSLPV    ++A+ LW RLQ ++S+HSFDTPLYRFN+P
Sbjct: 42 ATRYWIVSLPVQTPGSTANSLWARLQDSISRHSFDTPLYRFNVP 85


>emb|CAB65127.1| vacuolar H+-ATPase subunit C [Hordeum vulgare subsp. vulgare]
          gi|12585487|sp|Q9SCB9|VATC_HORVU Vacuolar ATP synthase
          subunit C (V-ATPase C subunit) (Vacuolar proton pump C
          subunit)
          Length = 354

 Score = 51.2 bits (121), Expect = 7e-06
 Identities = 25/60 (41%), Positives = 38/60 (62%), Gaps = 7/60 (11%)

Query: 2  AVVWWVVSLPVHNS-----ASELWNRLQQNVSKHSFDTPLYRFNIPISGSEP*TLSAMIS 56
          A  +W+ +LPV +       + LW RLQ+ +S+HSFDTPLYRF +P     P TL ++++
Sbjct: 2  ATRYWIAALPVADDNVAAGKTALWARLQEAISRHSFDTPLYRFTVP--DLRPGTLDSLLA 59


>emb|CAD63217.1| ATPase of the PilT family [Lactobacillus plantarum WCFS1]
          gi|28377484|ref|NP_784376.1| ATPase of the PilT family
          [Lactobacillus plantarum WCFS1]
          Length = 391

 Score = 31.6 bits (70), Expect = 5.9
 Identities = 15/37 (40%), Positives = 27/37 (72%)

Query: 1  GAVVWWVVSLPVHNSASELWNRLQQNVSKHSFDTPLY 37
          GA++ WV+SL + N+A  L +R+++N+SK +  T L+
Sbjct: 47 GALILWVLSLFLANAAVRLVDRVEKNLSKQNPMTLLF 83


  Database: nr
    Posted date:  Jul 5, 2005 12:34 AM
  Number of letters in database: 863,360,394
  Number of sequences in database:  2,540,612
  
Lambda     K      H
   0.327    0.135    0.452 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 90,668,424
Number of Sequences: 2540612
Number of extensions: 2419930
Number of successful extensions: 7420
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 7413
Number of HSP's gapped (non-prelim): 5
length of query: 56
length of database: 863,360,394
effective HSP length: 32
effective length of query: 24
effective length of database: 782,060,810
effective search space: 18769459440
effective search space used: 18769459440
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 69 (31.2 bits)