BLAST2 result
BLASTP 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TM0192.13
(1558 letters)
Database: nr
2,540,612 sequences; 863,360,394 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAC64917.1| gag-pol polyprotein [Glycine max] 938 0.0
gb|AAO73525.1| gag-pol polyprotein [Glycine max] 937 0.0
gb|AAO73529.1| gag-pol polyprotein [Glycine max] 933 0.0
gb|AAO73527.1| gag-pol polyprotein [Glycine max] 925 0.0
gb|AAO73521.1| gag-pol polyprotein [Glycine max] 922 0.0
gb|AAO73523.1| gag-pol polyprotein [Glycine max] 915 0.0
gb|AAC18777.1| gag-protease polyprotein [Glycine max] gi|7488678... 603 e-170
gb|AAG52949.1| gag/pol polyprotein [Arabidopsis thaliana] 560 e-157
gb|AAF18630.1| F5J5.1 [Arabidopsis thaliana] gi|25403474|pir||C8... 474 e-131
dbj|BAB11308.1| copia-like retroelement pol polyprotein [Arabido... 429 e-118
emb|CAB77910.1| putative transposon protein [Arabidopsis thalian... 402 e-110
gb|AAN40030.1| putative gag-pol polyprotein [Zea mays] 275 1e-71
emb|CAD40009.3| OSJNBb0052B05.12 [Oryza sativa (japonica cultiva... 241 1e-61
ref|XP_474304.1| OSJNBb0004A17.2 [Oryza sativa (japonica cultiva... 241 1e-61
gb|AAL76004.1| putative gag-pol polyprotein [Zea mays] 235 8e-60
gb|AAN60494.1| Putative Zea mays retrotransposon Opie-2 [Oryza s... 231 1e-58
ref|NP_910082.1| putative gag-pol polyprotein [Oryza sativa (jap... 231 2e-58
gb|AAC49502.1| Pol [Zea mays] gi|7489803|pir||T04112 pol protein... 228 2e-57
gb|AAP52089.1| putative polyprotein [Oryza sativa (japonica cult... 226 5e-57
ref|NP_909107.1| unnamed protein product [Oryza sativa (japonica... 226 6e-57
>gb|AAC64917.1| gag-pol polyprotein [Glycine max]
Length = 1550
Score = 938 bits (2425), Expect = 0.0
Identities = 481/851 (56%), Positives = 612/851 (71%), Gaps = 24/851 (2%)
Query: 1 MIAFLKSIDSKTWKSIVKRWKHPVKSDKEGTSTTELKPEEEWTKEEDEEALGNSKALNAI 60
M+AFLKS+DS+TWK+++K W+HP D EG T ELKPEE+WTKEEDE ALGNSKALNA+
Sbjct: 1 MVAFLKSLDSRTWKAVIKGWEHPKMLDTEGKPTNELKPEEDWTKEEDELALGNSKALNAL 60
Query: 61 FNGVDKNMFRLINTCTVAKDAWEILRVAHEGTTRVRVSRLQLLTTQFENLKMKEEETVFE 120
FNGVDKN+FRLINTCTVAKDAWEIL+ HEGT++V++SRLQLL T+FENLKMKEEE + E
Sbjct: 61 FNGVDKNIFRLINTCTVAKDAWEILKTTHEGTSKVKMSRLQLLATKFENLKMKEEECIHE 120
Query: 121 FHMKVRDMANASFALGEPMSEEKLVRKILRSLSKRFDMKVTAIEEAQDIGNIIVDELIGS 180
FHM + ++ANA ALGE M++EKLVRKILRSL KRFDMKVTAIEEAQDI N+ VDELIGS
Sbjct: 121 FHMNILEIANACTALGERMTDEKLVRKILRSLPKRFDMKVTAIEEAQDICNMRVDELIGS 180
Query: 181 LQTFEMSLNERSEKKNKSIAFVSNTV-DDDLSEKE*DENLSEAITLLGRKFNKVMRRFDR 239
LQTFE+ L++R+EKK+K++AFVSN ++D + + DE L+ A+ LLG++FNKV+ R DR
Sbjct: 181 LQTFELGLSDRTEKKSKNLAFVSNDEGEEDEYDLDTDEGLTNAVVLLGKQFNKVLNRMDR 240
Query: 240 KYRPNVTNKQSDIIKNSGNALKDKEEDKSIKAK*VQCHECEGYGHIRSECATFLKKQGKG 299
+ +P+V N DI K G+ + + ++K +K +QCH CEGYGHI++EC T LKKQ KG
Sbjct: 241 RQKPHVRNIPFDIRK--GSEYQKRSDEKPSHSKGIQCHGCEGYGHIKAECPTHLKKQRKG 298
Query: 300 MVATWSDDDSEEEE---EPQIMGLTGKCNSEADSSD--GEISEEELAESYKLLLNKWEDA 354
+ SDD E+E + + LTG+ S DSSD EI+ +ELA SY+ L K E
Sbjct: 299 LSVCRSDDTESEQESDSDRDVNALTGRFESAEDSSDTDSEITFDELAISYRELCIKSEKI 358
Query: 355 CEMGKKLDETVKNLKAEKQNLLITNGNLQEEIIMLK*KIEGMIKSVRMLNKGTDVFDLIL 414
+ +L + + NL+AEK+ L+ EI L K+E M KS++MLNKG+D+ D +L
Sbjct: 359 LQQEAQLKKVIANLEAEKEAHEDEISELKGEIGFLNSKLENMTKSIKMLNKGSDLLDEVL 418
Query: 415 EAGKEAKGRTGLGYTDNSGTEESKKITNTFIPTAKKTEFTKTNQVIQHNTPQIYRQMPYS 474
+ GK + GLG+ S + F+P T T + +H+ Q
Sbjct: 419 QLGKNVGNQRGLGFNHKSA---GRTTMTEFVPAKNSTGATMSQHRSRHHGTQ-------- 467
Query: 475 YPLSQKEINSRWRCHHCGKHGHIRPYCYRLYRTPQHWKPTQKNVSMKGRKWQPKNNVTAL 534
+K +WRCH+CGK+GHI+P+CY L+ P H TQ + S + W PK+ +L
Sbjct: 468 ---QKKSKRKKWRCHYCGKYGHIKPFCYHLHGHPHHG--TQSSSSGRKMMWVPKHKTVSL 522
Query: 535 VAYTSLRASSKEDRYFDSGCSRHMTGVKMYLEHVKPHSPSFVTFGDGAKGKIKGSGKIVN 594
V +TSLRAS+KED Y DSGCSRHMTGVK +L +++P S S+VTFGDG+KGKI G GK+V+
Sbjct: 523 VVHTSLRASAKEDWYLDSGCSRHMTGVKEFLVNIEPCSTSYVTFGDGSKGKITGMGKLVH 582
Query: 595 SDSPRLTDVLLVEGLTANLISISQLCDLDLNVSFIKVGCRVTDENEEVVMIGIRSVDNCY 654
P L VLLV+GLTANLISISQLCD NV+F K C VT+E EV+M G RS DNCY
Sbjct: 583 DGLPSLNKVLLVKGLTANLISISQLCDEGFNVNFTKSECLVTNEKSEVLMKGSRSKDNCY 642
Query: 655 MWSPLSKGLITKCLVSKEEETKLWHKKLGHLNPKSMKKIITKEAIRGLPKLKIEEGKVCG 714
+W+P + CL SKE+E K+WH++ GHL+ + MKKII K A+RG+P LKIEEG++CG
Sbjct: 643 LWTPQETSYSSTCLFSKEDEVKIWHQRFGHLHLRGMKKIIDKGAVRGIPNLKIEEGRICG 702
Query: 715 ECQIGKQTQAPYKKLTHIATSKSLELLHMDLMGPMQKESFGGKRYVFVCVDDFSRFTWVS 774
ECQIGKQ + +KL H TS+ LELLHMDLMGPMQ ES G KRY +V VDDFSRFTWV+
Sbjct: 703 ECQIGKQVKMSNQKLQHQTTSRVLELLHMDLMGPMQVESLGRKRYAYVVVDDFSRFTWVN 762
Query: 775 FIAEKSDTFEVFRELSQQLQREKGYGIVKIRSDHGKEFENSKFSEYCIKEGIKHEFSAPI 834
FI EKSDTFEVF+ELS +LQREK I +IRSDHG+EFENSKF+E+C EGI HEFSA I
Sbjct: 763 FIREKSDTFEVFKELSLRLQREKDCVIKRIRSDHGREFENSKFTEFCTSEGITHEFSAAI 822
Query: 835 TTQQNGVVEKK 845
T QQNG+VE+K
Sbjct: 823 TPQQNGIVERK 833
>gb|AAO73525.1| gag-pol polyprotein [Glycine max]
Length = 1576
Score = 937 bits (2421), Expect = 0.0
Identities = 483/851 (56%), Positives = 616/851 (71%), Gaps = 25/851 (2%)
Query: 1 MIAFLKSIDSKTWKSIVKRWKHPVKSDKEGTSTTELKPEEEWTKEEDEEALGNSKALNAI 60
M+AFLKS+DS+TWK+++K W+HP D EG T ELKPEE+WTKEEDE ALGNSKALNA+
Sbjct: 28 MVAFLKSLDSRTWKAVIKGWEHPKMLDTEGKPTNELKPEEDWTKEEDELALGNSKALNAL 87
Query: 61 FNGVDKNMFRLINTCTVAKDAW-EILRVAHEGTTRVRVSRLQLLTTQFENLKMKEEETVF 119
FNGVDKN+FRLINTCTVAKDA EIL+ HEGT++V++SRLQLL T+FENLKMKEEE +
Sbjct: 88 FNGVDKNIFRLINTCTVAKDACGEILKTTHEGTSKVKMSRLQLLATKFENLKMKEEECIH 147
Query: 120 EFHMKVRDMANASFALGEPMSEEKLVRKILRSLSKRFDMKVTAIEEAQDIGNIIVDELIG 179
+FHM + ++ANA ALGE M++EKLVRKILRSL KRFDMKVTAIEEAQDI N+ VDELIG
Sbjct: 148 DFHMNILEIANACTALGERMTDEKLVRKILRSLPKRFDMKVTAIEEAQDICNMRVDELIG 207
Query: 180 SLQTFEMSLNERSEKKNKSIAFVSNTV-DDDLSEKE*DENLSEAITLLGRKFNKVMRRFD 238
SLQTFE+ L++R+EKK+K++AFVSN ++D + + DE L+ A+ LLG++FNKV+ R D
Sbjct: 208 SLQTFELGLSDRNEKKSKNLAFVSNDEGEEDEYDLDTDEGLTNAVGLLGKQFNKVLNRMD 267
Query: 239 RKYRPNVTNKQSDIIKNSGNALKDKEEDKSIKAK*VQCHECEGYGHIRSECATFLKKQGK 298
R+ +P+V N DI K G+ K ++K +K +QCH CEGYGHI++EC T LKKQ K
Sbjct: 268 RRQKPHVRNIPFDIRK--GSEYHKKSDEKPSHSKGIQCHGCEGYGHIKAECPTHLKKQRK 325
Query: 299 GMVATWSDDDSEEEE---EPQIMGLTGKCNSEADSSDGEISEEELAESYKLLLNKWEDAC 355
G+ SDD E+E + + LTG+ S+ DSSD EI+ +ELA SY+ L K E
Sbjct: 326 GLSVCRSDDTESEQESDSDRDVNALTGRFESDEDSSDIEITFDELAISYRKLCIKSEKIL 385
Query: 356 EMGKKLDETVKNLKAEKQNLLITNGNLQEEIIMLK*KIEGMIKSVRMLNKGTDVFDLILE 415
+ +L + + NL+AEK+ L+ E+ L K+E M KS++MLNKG+D+ D +L+
Sbjct: 386 QQEAQLKKVIANLEAEKEAHEEEISELKGEVGFLNSKLENMTKSIKMLNKGSDMLDEVLQ 445
Query: 416 AGKEAKGRTGLGYTDNSGTEESKKITNT-FIPTAKKTEFTKTNQVIQHNTPQIYRQMPYS 474
GK + GLG+ S +IT T F+P T T + +H+ Q
Sbjct: 446 LGKNVGNQRGLGFNHKSAC----RITMTEFVPAKNSTGATMSQHRSRHHGTQ-------- 493
Query: 475 YPLSQKEINSRWRCHHCGKHGHIRPYCYRLYRTPQHWKPTQKNVSMKGRKWQPKNNVTAL 534
+K +WRCH+CGK+GHI+P+CY L+ P H TQ + S + W PK+ + +L
Sbjct: 494 ---QKKSKRKKWRCHYCGKYGHIKPFCYHLHGHPHHG--TQSSSSGRKMMWVPKHKIVSL 548
Query: 535 VAYTSLRASSKEDRYFDSGCSRHMTGVKMYLEHVKPHSPSFVTFGDGAKGKIKGSGKIVN 594
V +TSLRAS+KED Y DSGCSRHMTGVK +L +++P S S+VTFGDG+KGKI G GK+V+
Sbjct: 549 VVHTSLRASAKEDWYLDSGCSRHMTGVKEFLVNIEPCSTSYVTFGDGSKGKITGMGKLVH 608
Query: 595 SDSPRLTDVLLVEGLTANLISISQLCDLDLNVSFIKVGCRVTDENEEVVMIGIRSVDNCY 654
P L VLLV+GLTANLISISQLCD NV+F K C VT+E EV+M G RS DNCY
Sbjct: 609 DGLPSLNKVLLVKGLTANLISISQLCDEGFNVNFTKSECLVTNEKSEVLMKGSRSKDNCY 668
Query: 655 MWSPLSKGLITKCLVSKEEETKLWHKKLGHLNPKSMKKIITKEAIRGLPKLKIEEGKVCG 714
+W+P + CL SKE+E K+WH++ GHL+ + MKKII K A+RG+P LKIEEG++CG
Sbjct: 669 LWTPQETSYSSTCLSSKEDEVKIWHQRFGHLHLRGMKKIIDKGAVRGIPNLKIEEGRICG 728
Query: 715 ECQIGKQTQAPYKKLTHIATSKSLELLHMDLMGPMQKESFGGKRYVFVCVDDFSRFTWVS 774
ECQIGKQ + ++KL H TS LELLHMDLMGPMQ ES GGKRY +V VDDFSRFTWV+
Sbjct: 729 ECQIGKQVKMSHQKLQHQTTSMVLELLHMDLMGPMQVESLGGKRYAYVVVDDFSRFTWVN 788
Query: 775 FIAEKSDTFEVFRELSQQLQREKGYGIVKIRSDHGKEFENSKFSEYCIKEGIKHEFSAPI 834
FI EKSDTFEVF+ELS +LQREK I +IRSDHG+EFENSKF+E+C EGI HEFSA I
Sbjct: 789 FIREKSDTFEVFKELSLRLQREKDCVIKRIRSDHGREFENSKFTEFCTSEGITHEFSAAI 848
Query: 835 TTQQNGVVEKK 845
T QQNG+VE+K
Sbjct: 849 TPQQNGIVERK 859
>gb|AAO73529.1| gag-pol polyprotein [Glycine max]
Length = 1577
Score = 933 bits (2411), Expect = 0.0
Identities = 476/851 (55%), Positives = 612/851 (70%), Gaps = 24/851 (2%)
Query: 1 MIAFLKSIDSKTWKSIVKRWKHPVKSDKEGTSTTELKPEEEWTKEEDEEALGNSKALNAI 60
M+AFLKS+DS+TWK+++K W+HP D EG T ELKPEE+WTKEEDE ALGNSKALNA+
Sbjct: 28 MVAFLKSLDSRTWKAVIKGWEHPKMLDTEGKPTNELKPEEDWTKEEDELALGNSKALNAL 87
Query: 61 FNGVDKNMFRLINTCTVAKDAWEILRVAHEGTTRVRVSRLQLLTTQFENLKMKEEETVFE 120
FNGVDKN+FRLINTCTVAKDAWEIL+ HEGT++V++SRLQLL T+FENLKMKEEE + +
Sbjct: 88 FNGVDKNIFRLINTCTVAKDAWEILKTTHEGTSKVKMSRLQLLATKFENLKMKEEECIHD 147
Query: 121 FHMKVRDMANASFALGEPMSEEKLVRKILRSLSKRFDMKVTAIEEAQDIGNIIVDELIGS 180
FHM + ++ANA ALGE M++EKLVRKILRSL KRFDMKVTAIEEAQDI N+ VDELIGS
Sbjct: 148 FHMTILEIANACTALGERMTDEKLVRKILRSLPKRFDMKVTAIEEAQDICNMRVDELIGS 207
Query: 181 LQTFEMSLNERSEKKNKSIAFVSNTV-DDDLSEKE*DENLSEAITLLGRKFNKVMRRFDR 239
LQTFE+ L++R+EKK+K++AFVSN ++D + + DE L+ A+ LG++FNKV+ R DR
Sbjct: 208 LQTFELGLSDRTEKKSKNLAFVSNDEGEEDEYDLDTDEGLTNAVVFLGKQFNKVLNRMDR 267
Query: 240 KYRPNVTNKQSDIIKNSGNALKDKEEDKSIKAK*VQCHECEGYGHIRSECATFLKKQGKG 299
+ +P+V N DI K G+ + K ++K +K +QC CEGYGHI++EC T LKKQ KG
Sbjct: 268 RQKPHVRNISLDIRK--GSEYQRKSDEKPSHSKGIQCRGCEGYGHIKAECPTHLKKQRKG 325
Query: 300 MVATWSDDDSEEEE---EPQIMGLTGKCNSEADSSD--GEISEEELAESYKLLLNKWEDA 354
+ SDD E+E + + LTG+ S DSSD EI+ +ELA Y+ L K E
Sbjct: 326 LSVCRSDDTESEQESDSDRDVNALTGRFESAEDSSDTDSEITFDELAIFYRELCIKSEKI 385
Query: 355 CEMGKKLDETVKNLKAEKQNLLITNGNLQEEIIMLK*KIEGMIKSVRMLNKGTDVFDLIL 414
+ +L + + NL+AEK+ L+ E+ L K+E M KS++MLNKG+D+ D +L
Sbjct: 386 LQQEAQLKKVIANLEAEKEAHEEEISKLKGEVGFLNSKLENMTKSIKMLNKGSDMLDZVL 445
Query: 415 EAGKEAKGRTGLGYTDNSGTEESKKITNTFIPTAKKTEFTKTNQVIQHNTPQIYRQMPYS 474
+ GK+ + GLG+ S + F+P T T + +H+ Q
Sbjct: 446 QLGKKVGNQRGLGFNHKSA---GRTTMTEFVPAKNSTGATMSQHRSRHHGTQ-------- 494
Query: 475 YPLSQKEINSRWRCHHCGKHGHIRPYCYRLYRTPQHWKPTQKNVSMKGRKWQPKNNVTAL 534
++ +WRCH+CGK+GHI+P+CY L+ P H TQ + S + W PK+ + +L
Sbjct: 495 ---QKRSKRKKWRCHYCGKYGHIKPFCYHLHGHPHHG--TQGSSSGRKMMWVPKHKIVSL 549
Query: 535 VAYTSLRASSKEDRYFDSGCSRHMTGVKMYLEHVKPHSPSFVTFGDGAKGKIKGSGKIVN 594
V +TSLRAS+KED Y DSGCSRHMTGVK +L +++P S S+VTFGDG+KGKI G GK+V+
Sbjct: 550 VVHTSLRASAKEDWYLDSGCSRHMTGVKEFLVNIEPCSTSYVTFGDGSKGKITGMGKLVH 609
Query: 595 SDSPRLTDVLLVEGLTANLISISQLCDLDLNVSFIKVGCRVTDENEEVVMIGIRSVDNCY 654
P L VLLV+GLT NLISISQLCD NV+F K C VT+E EV+M G RS DNCY
Sbjct: 610 EGLPSLNKVLLVKGLTVNLISISQLCDEGFNVNFTKSECLVTNEKSEVLMKGSRSKDNCY 669
Query: 655 MWSPLSKGLITKCLVSKEEETKLWHKKLGHLNPKSMKKIITKEAIRGLPKLKIEEGKVCG 714
+W+P + CL SKE+E K+WH++ GHL+ + MKKII K A+RG+P LKIEEG++CG
Sbjct: 670 LWTPQESSHSSTCLFSKEDEVKIWHQRFGHLHLRGMKKIIDKGAVRGIPNLKIEEGRICG 729
Query: 715 ECQIGKQTQAPYKKLTHIATSKSLELLHMDLMGPMQKESFGGKRYVFVCVDDFSRFTWVS 774
ECQIGKQ + ++KL H TS+ LELLHMDLMGPMQ ES GGKRY +V VDDFSRFTWV+
Sbjct: 730 ECQIGKQVKMSHQKLQHQTTSRVLELLHMDLMGPMQVESLGGKRYAYVVVDDFSRFTWVN 789
Query: 775 FIAEKSDTFEVFRELSQQLQREKGYGIVKIRSDHGKEFENSKFSEYCIKEGIKHEFSAPI 834
FI EKSDTFEVF+ELS +LQREK I +IRSDHG+EFENSKF+E+C EGI HEFSA I
Sbjct: 790 FIREKSDTFEVFKELSLRLQREKDCVIKRIRSDHGREFENSKFTEFCTSEGITHEFSAAI 849
Query: 835 TTQQNGVVEKK 845
T QQNG+VE+K
Sbjct: 850 TPQQNGIVERK 860
>gb|AAO73527.1| gag-pol polyprotein [Glycine max]
Length = 1576
Score = 925 bits (2390), Expect = 0.0
Identities = 473/850 (55%), Positives = 612/850 (71%), Gaps = 23/850 (2%)
Query: 1 MIAFLKSIDSKTWKSIVKRWKHPVKSDKEGTSTTELKPEEEWTKEEDEEALGNSKALNAI 60
M+AFLKS+DS+TWK+++K W+HP D EG T ELKPEE+WTKEEDE ALGNSKALNA+
Sbjct: 28 MVAFLKSLDSRTWKAVIKGWEHPKMLDTEGKPTDELKPEEDWTKEEDELALGNSKALNAL 87
Query: 61 FNGVDKNMFRLINTCTVAKDAWEILRVAHEGTTRVRVSRLQLLTTQFENLKMKEEETVFE 120
FNGVDKN+FRLINTCTVAKDAWEIL++ HEGT++V++SRLQLL T+FENLKMKEEE + +
Sbjct: 88 FNGVDKNIFRLINTCTVAKDAWEILKITHEGTSKVKMSRLQLLATKFENLKMKEEECIHD 147
Query: 121 FHMKVRDMANASFALGEPMSEEKLVRKILRSLSKRFDMKVTAIEEAQDIGNIIVDELIGS 180
FHM + ++ANA ALGE +++EKLVRKILRSL KRFDMKVTAIEEAQDI N+ VDELIGS
Sbjct: 148 FHMNILEIANACTALGERITDEKLVRKILRSLPKRFDMKVTAIEEAQDICNMRVDELIGS 207
Query: 181 LQTFEMSLNERSEKKNKSIAFVSNTV-DDDLSEKE*DENLSEAITLLGRKFNKVMRRFDR 239
LQTFE+ L++R+EKK+K++AFVSN ++D + + DE L+ A+ LLG++FNKV+ R D+
Sbjct: 208 LQTFELGLSDRAEKKSKNLAFVSNDEGEEDEYDLDTDEGLTNAVVLLGKQFNKVLNRMDK 267
Query: 240 KYRPNVTNKQSDIIKNSGNALKDKEEDKSIKAK*VQCHECEGYGHIRSECATFLKKQGKG 299
+ +P+V N DI K G+ + + + K +K +QCH CEGYGHI +EC T LKK KG
Sbjct: 268 RQKPHVQNIPFDIRK--GSKYQKRSDVKPSHSKGIQCHGCEGYGHIIAECPTHLKKHRKG 325
Query: 300 MVATWSDDDSEEEEEPQ--IMGLTGKCNSEADSSD--GEISEEELAESYKLLLNKWEDAC 355
+ SD +SE+E + + LTG + DSSD EI+ +ELA SY+ L K E
Sbjct: 326 LSVCQSDTESEQESDSDRDVNALTGIFETAEDSSDTDSEITFDELAASYRKLCIKSEKIL 385
Query: 356 EMGKKLDETVKNLKAEKQNLLITNGNLQEEIIMLK*KIEGMIKSVRMLNKGTDVFDLILE 415
+ +L + + +L+AEK+ L+ E+ L K+E M KS++MLNKG+D D +L
Sbjct: 386 QQEAQLKKVIADLEAEKEAHEEEISELKGEVGFLNSKLETMKKSIKMLNKGSDTLDEVLL 445
Query: 416 AGKEAKGRTGLGYTDNSGTEESKKITNTFIPTAKKTEFTKTNQVIQHNTPQIYRQMPYSY 475
GK A + GLG+ + F+P +T T + + +H+ Q
Sbjct: 446 LGKNAGNQRGLGFNPKFA---GRTTMTEFVPAKNRTGTTMSQHLSRHHGTQ--------- 493
Query: 476 PLSQKEINSRWRCHHCGKHGHIRPYCYRLYRTPQHWKPTQKNVSMKGRKWQPKNNVTALV 535
+K +WRCH+CGK+GHI+P+CY L+ P H TQ + S K W PK+ +LV
Sbjct: 494 --QKKSKRKKWRCHYCGKYGHIKPFCYHLHGHPHHG--TQSSNSRKKMMWVPKHKAVSLV 549
Query: 536 AYTSLRASSKEDRYFDSGCSRHMTGVKMYLEHVKPHSPSFVTFGDGAKGKIKGSGKIVNS 595
+TSLRAS+KED Y DSGCSRHMTGVK +L +++P S S+VTFGDG+KGKI G GK+V+
Sbjct: 550 VHTSLRASAKEDWYLDSGCSRHMTGVKEFLLNIEPCSTSYVTFGDGSKGKIIGMGKLVHD 609
Query: 596 DSPRLTDVLLVEGLTANLISISQLCDLDLNVSFIKVGCRVTDENEEVVMIGIRSVDNCYM 655
P L VLLV+GLTANLISISQLCD NV+F K C VT+E EV+M G RS DNCY+
Sbjct: 610 GLPSLNKVLLVKGLTANLISISQLCDEGFNVNFTKSECLVTNEKSEVLMKGSRSKDNCYL 669
Query: 656 WSPLSKGLITKCLVSKEEETKLWHKKLGHLNPKSMKKIITKEAIRGLPKLKIEEGKVCGE 715
W+P + CL SKE+E ++WH++ GHL+ + MKKII K A+RG+P LKIEEG++CGE
Sbjct: 670 WTPQETSYSSTCLSSKEDEVRIWHQRFGHLHLRGMKKIIDKGAVRGIPNLKIEEGRICGE 729
Query: 716 CQIGKQTQAPYKKLTHIATSKSLELLHMDLMGPMQKESFGGKRYVFVCVDDFSRFTWVSF 775
CQIGKQ + ++KL H TS+ LELLHMDLMGPMQ ES GGKRY +V VDDFSRFTWV+F
Sbjct: 730 CQIGKQVKMSHQKLRHQTTSRVLELLHMDLMGPMQVESLGGKRYAYVVVDDFSRFTWVNF 789
Query: 776 IAEKSDTFEVFRELSQQLQREKGYGIVKIRSDHGKEFENSKFSEYCIKEGIKHEFSAPIT 835
I EKS+TFEVF+ELS +LQREK I +IRSDHG+EFENS+F+E+C EGI HEFSA IT
Sbjct: 790 IREKSETFEVFKELSLRLQREKDCVIKRIRSDHGREFENSRFTEFCTSEGITHEFSAAIT 849
Query: 836 TQQNGVVEKK 845
QQNG+VE+K
Sbjct: 850 PQQNGIVERK 859
>gb|AAO73521.1| gag-pol polyprotein [Glycine max]
Length = 1574
Score = 922 bits (2383), Expect = 0.0
Identities = 474/850 (55%), Positives = 609/850 (70%), Gaps = 25/850 (2%)
Query: 1 MIAFLKSIDSKTWKSIVKRWKHPVKSDKEGTSTTELKPEEEWTKEEDEEALGNSKALNAI 60
M+AFLKS+DS+TWK+++K W+HP D EG T ELKPEE+WTKEEDE ALGNSKALNA+
Sbjct: 28 MVAFLKSLDSRTWKAVIKGWEHPKMLDTEGKPTDELKPEEDWTKEEDELALGNSKALNAL 87
Query: 61 FNGVDKNMFRLINTCTVAKDAWEILRVAHEGTTRVRVSRLQLLTTQFENLKMKEEETVFE 120
FNGVDKN+FRLINTCTVAKDAWEIL++ HEGT++V++SRLQLL T+FENLKMKEEE + +
Sbjct: 88 FNGVDKNIFRLINTCTVAKDAWEILKITHEGTSKVKISRLQLLATKFENLKMKEEECIHD 147
Query: 121 FHMKVRDMANASFALGEPMSEEKLVRKILRSLSKRFDMKVTAIEEAQDIGNIIVDELIGS 180
FHM + ++ANA ALGE +++EKLVRKILRSL KRFDMKVTAIEEAQDI N+ VDELIGS
Sbjct: 148 FHMNILEIANACTALGERITDEKLVRKILRSLPKRFDMKVTAIEEAQDICNMRVDELIGS 207
Query: 181 LQTFEMSLNERSEKKNKSIAFVSNTV-DDDLSEKE*DENLSEAITLLGRKFNKVMRRFDR 239
LQTFE+ L++R+EKK+K++AFVSN ++D + DE L+ A+ LLG++FNKV+ R D+
Sbjct: 208 LQTFELGLSDRAEKKSKNLAFVSNDEGEEDEYDLNTDEGLTNAVVLLGKQFNKVLNRMDK 267
Query: 240 KYRPNVTNKQSDIIKNSGNALKDKEEDKSIKAK*VQCHECEGYGHIRSECATFLKKQGKG 299
+ +P+V N DI K G+ + K + K +K +QCH CEGYGHI +EC T LKK KG
Sbjct: 268 RQKPHVQNIPFDIRK--GSKYQKKSDVKPSHSKGIQCHGCEGYGHIIAECPTHLKKHRKG 325
Query: 300 MVATWSDDDSEEEEEPQ--IMGLTGKCNSEADSSD--GEISEEELAESYKLLLNKWEDAC 355
+ SD +SE+E + + LTG + DSSD EI+ +ELA SY+ L K E
Sbjct: 326 LSVCQSDTESEQESDSDRDVNALTGIFETAEDSSDTDSEITFDELATSYRKLCIKSEKIL 385
Query: 356 EMGKKLDETVKNLKAEKQNLLITNGNLQEEIIMLK*KIEGMIKSVRMLNKGTDVFDLILE 415
+ +L + + +L+AEK+ L+ E+ L K+E M KS++MLNKG+D D +L
Sbjct: 386 QQEAQLKKVIADLEAEKEAHKEEISELKGEVGFLNSKLENMTKSIKMLNKGSDTLDEVLL 445
Query: 416 AGKEAKGRTGLGYTDNSGTEESKKITNTFIPTAKKTEFTKTNQVIQHNTPQIYRQMPYSY 475
GK A + GLG+ S + F+P +T T + +H+ Q
Sbjct: 446 LGKNAGNQRGLGFNPKSA---GRTTMTEFVPAKNRTGATMSQHRSRHHGMQ--------- 493
Query: 476 PLSQKEINSRWRCHHCGKHGHIRPYCYRLYRTPQHWKPTQKNVSMKGRKWQPKNNVTALV 535
+K +WRCH+CGK+GHI+P+CY L+ P H TQ + S K W PK+ +LV
Sbjct: 494 --QKKSKRKKWRCHYCGKYGHIKPFCYHLH--PHHG--TQSSNSRKKMMWVPKHKAVSLV 547
Query: 536 AYTSLRASSKEDRYFDSGCSRHMTGVKMYLEHVKPHSPSFVTFGDGAKGKIKGSGKIVNS 595
+TSLRAS+KED Y DSGCSRHMTGVK +L +++P S S+VTFGDG+KGKI G GK+V+
Sbjct: 548 VHTSLRASAKEDWYLDSGCSRHMTGVKEFLLNIEPCSTSYVTFGDGSKGKIIGMGKLVHD 607
Query: 596 DSPRLTDVLLVEGLTANLISISQLCDLDLNVSFIKVGCRVTDENEEVVMIGIRSVDNCYM 655
P L VLLV+GLTANLISISQLCD NV+F K C VT+E EV+M G RS DNCY+
Sbjct: 608 GLPSLNKVLLVKGLTANLISISQLCDEGFNVNFTKSECLVTNEKSEVLMKGSRSKDNCYL 667
Query: 656 WSPLSKGLITKCLVSKEEETKLWHKKLGHLNPKSMKKIITKEAIRGLPKLKIEEGKVCGE 715
W+P + CL SKE+E ++WH++ GHL+ + MKKII K A+RG+P LKIEEG++CGE
Sbjct: 668 WTPQETSYSSTCLSSKEDEVRIWHQRFGHLHLRGMKKIIDKGAVRGIPNLKIEEGRICGE 727
Query: 716 CQIGKQTQAPYKKLTHIATSKSLELLHMDLMGPMQKESFGGKRYVFVCVDDFSRFTWVSF 775
CQIGKQ + ++KL H TS+ LELLHMDLMGPMQ ES GGKRY +V VDDFSRFTWV F
Sbjct: 728 CQIGKQVKMSHQKLQHQTTSRVLELLHMDLMGPMQVESLGGKRYAYVVVDDFSRFTWVKF 787
Query: 776 IAEKSDTFEVFRELSQQLQREKGYGIVKIRSDHGKEFENSKFSEYCIKEGIKHEFSAPIT 835
I EKS+TFEVF+ELS +LQREK I +IRSDHG+EFENS+ +E+C EGI HEFSA IT
Sbjct: 788 IREKSETFEVFKELSLRLQREKDCVIKRIRSDHGREFENSRLTEFCTSEGITHEFSAAIT 847
Query: 836 TQQNGVVEKK 845
QQNG+VE+K
Sbjct: 848 PQQNGIVERK 857
>gb|AAO73523.1| gag-pol polyprotein [Glycine max]
Length = 1576
Score = 915 bits (2365), Expect = 0.0
Identities = 470/850 (55%), Positives = 608/850 (71%), Gaps = 23/850 (2%)
Query: 1 MIAFLKSIDSKTWKSIVKRWKHPVKSDKEGTSTTELKPEEEWTKEEDEEALGNSKALNAI 60
M+AFLKS+DS+TWK+++K W+HP D EG T ELKPEE+WTKEEDE ALGNSKALNA+
Sbjct: 28 MVAFLKSLDSRTWKAVIKGWEHPKMLDTEGKPTDELKPEEDWTKEEDELALGNSKALNAL 87
Query: 61 FNGVDKNMFRLINTCTVAKDAWEILRVAHEGTTRVRVSRLQLLTTQFENLKMKEEETVFE 120
FNGVDKN+FRLINTCTVAKDA EIL+ HEGT++V++SRLQLL T+FENLKMKEEE + +
Sbjct: 88 FNGVDKNIFRLINTCTVAKDACEILKSTHEGTSKVKMSRLQLLATKFENLKMKEEECIHD 147
Query: 121 FHMKVRDMANASFALGEPMSEEKLVRKILRSLSKRFDMKVTAIEEAQDIGNIIVDELIGS 180
FHM + ++ANA ALGE +++EKLVRKILRSL KRFDMKVTAIEEAQDI N+ VDELIGS
Sbjct: 148 FHMNILEIANACTALGERITDEKLVRKILRSLPKRFDMKVTAIEEAQDICNMRVDELIGS 207
Query: 181 LQTFEMSLNERSEKKNKSIAFVSNTV-DDDLSEKE*DENLSEAITLLGRKFNKVMRRFDR 239
LQTFE+ L++R+EKK+K++AFVSN ++D + + DE L+ A+ LLG++FNKV+ R D+
Sbjct: 208 LQTFELGLSDRAEKKSKNLAFVSNDEGEEDEYDLDTDEGLTNAVVLLGKQFNKVLNRMDK 267
Query: 240 KYRPNVTNKQSDIIKNSGNALKDKEEDKSIKAK*VQCHECEGYGHIRSECATFLKKQGKG 299
+ +P+V N DI K G+ + + + K +K +QCH CEGYGHI +EC T LKK KG
Sbjct: 268 RQKPHVQNIPFDIRK--GSKYQKRSDVKPSHSKGIQCHGCEGYGHIIAECPTHLKKHRKG 325
Query: 300 MVATWSDDDSEEEEEPQ--IMGLTGKCNSEADSSD--GEISEEELAESYKLLLNKWEDAC 355
+ SD +SE+E + + L G + DSSD EI+ +ELA SY+ L K E
Sbjct: 326 LSVCQSDTESEQESDSDRDVNALIGIFETAEDSSDTDSEITFDELAASYRKLCIKSEKIL 385
Query: 356 EMGKKLDETVKNLKAEKQNLLITNGNLQEEIIMLK*KIEGMIKSVRMLNKGTDVFDLILE 415
+ +L + + +L+AEK+ L+ E+ L K+E M KS++MLNKG+D D +L
Sbjct: 386 QQEAQLKKVIADLEAEKEAHKEEISELKGEVGFLNSKLENMTKSIKMLNKGSDTLDEVLL 445
Query: 416 AGKEAKGRTGLGYTDNSGTEESKKITNTFIPTAKKTEFTKTNQVIQHNTPQIYRQMPYSY 475
GK A + GLG+ S + F+P +T T + +H+ Q
Sbjct: 446 LGKNAGNQRGLGFNPKSA---GRTTMTEFVPAKNRTGATMSQHRSRHHGMQ--------- 493
Query: 476 PLSQKEINSRWRCHHCGKHGHIRPYCYRLYRTPQHWKPTQKNVSMKGRKWQPKNNVTALV 535
+K +WRCH+CGK+GHI+P+CY L+ P H TQ + S K W PK+ +LV
Sbjct: 494 --QKKSKRKKWRCHYCGKYGHIKPFCYHLHGHPHHG--TQSSNSRKKMMWVPKHKAVSLV 549
Query: 536 AYTSLRASSKEDRYFDSGCSRHMTGVKMYLEHVKPHSPSFVTFGDGAKGKIKGSGKIVNS 595
+TSLRAS+KED Y DSGCSRHMTGVK +L +++P S S+VTFGDG+KGKI G GK+V+
Sbjct: 550 VHTSLRASAKEDWYLDSGCSRHMTGVKEFLLNIEPCSTSYVTFGDGSKGKIIGMGKLVHD 609
Query: 596 DSPRLTDVLLVEGLTANLISISQLCDLDLNVSFIKVGCRVTDENEEVVMIGIRSVDNCYM 655
P L VLLV+GLTANLISISQLCD NV+F K C VT+E EV+M G RS DNCY+
Sbjct: 610 GLPSLNKVLLVKGLTANLISISQLCDEGFNVNFTKSECLVTNEKSEVLMKGSRSKDNCYL 669
Query: 656 WSPLSKGLITKCLVSKEEETKLWHKKLGHLNPKSMKKIITKEAIRGLPKLKIEEGKVCGE 715
W+P + CL SKE+E ++WH++ GHL+ + MKKI+ K A+RG+P LKIEEG++CGE
Sbjct: 670 WTPQETSYSSTCLSSKEDEVRIWHQRFGHLHLRGMKKILDKSAVRGIPNLKIEEGRICGE 729
Query: 716 CQIGKQTQAPYKKLTHIATSKSLELLHMDLMGPMQKESFGGKRYVFVCVDDFSRFTWVSF 775
CQIGKQ + ++KL H TS+ LELLHMDLMGPMQ ES GGKRY +V VDDFSRFTWV+F
Sbjct: 730 CQIGKQVKMSHQKLQHQTTSRVLELLHMDLMGPMQVESLGGKRYAYVVVDDFSRFTWVNF 789
Query: 776 IAEKSDTFEVFRELSQQLQREKGYGIVKIRSDHGKEFENSKFSEYCIKEGIKHEFSAPIT 835
I EKS TFEVF++LS +LQREK I +IRSDHG+EFENS+F+E+C EGI HEFSA IT
Sbjct: 790 IREKSGTFEVFKKLSLRLQREKDCVIKRIRSDHGREFENSRFTEFCTSEGITHEFSAAIT 849
Query: 836 TQQNGVVEKK 845
QQNG+VE+K
Sbjct: 850 PQQNGIVERK 859
>gb|AAC18777.1| gag-protease polyprotein [Glycine max] gi|7488678|pir||T06419
gag-proteinase polyprotein - soybean retrovirus-like
element
Length = 640
Score = 603 bits (1554), Expect = e-170
Identities = 317/601 (52%), Positives = 421/601 (69%), Gaps = 26/601 (4%)
Query: 1 MIAFLKSIDSKTWKSIVKRWKHPVKSDKEGTSTTELKPEEEWTKEEDEEALGNSKALNAI 60
M+AFLKS+DS+TWK+++K W+HP D EG T LKPEE+WTKEEDE ALGNSKALNA+
Sbjct: 28 MVAFLKSLDSRTWKAVIKDWEHPKMLDTEGKPTDGLKPEEDWTKEEDELALGNSKALNAL 87
Query: 61 FNGVDKNMFRLINTCTVAKDAWEILRVAHEGTTRVRVSRLQLLTTQFENLKMKEEETVFE 120
FNGVDKN+FRLINTCTVAKDAWEIL+ HEGT++V++SRLQLL T+FENLKMKEEE + +
Sbjct: 88 FNGVDKNIFRLINTCTVAKDAWEILKTTHEGTSKVKMSRLQLLATKFENLKMKEEECIHD 147
Query: 121 FHMKVRDMANASFALGEPMSEEKLVRKILRSLSKRFDMKVTAIEEAQDIGNIIVDELIGS 180
FHM + ++ANA ALGE M++EKLVRKILRSL KRFDMKVTAIEEAQDI N+ VDELIGS
Sbjct: 148 FHMNILEIANACTALGERMTDEKLVRKILRSLPKRFDMKVTAIEEAQDICNLRVDELIGS 207
Query: 181 LQTFEMSLNERSEKKNKSIAFVSNTV-DDDLSEKE*DENLSEAITLLGRKFNKVMRRFDR 239
LQTFE+ L++R+EKK+K++AFVSN ++D + + DE L+ A+ LLG++FNKV+ R DR
Sbjct: 208 LQTFELGLSDRTEKKSKNLAFVSNDEGEEDEYDLDTDEGLTNAVVLLGKQFNKVLNRMDR 267
Query: 240 KYRPNVTNKQSDIIKNSGNALKDKEEDKSIKAK*VQCHECEGYGHIRSECATFLKKQGKG 299
+ +P+V N DI K G+ + + ++K +K QCH CEGYGHI++EC T LKKQ KG
Sbjct: 268 RQKPHVRNIPFDIRK--GSEYQKRSDEKPSHSKGFQCHGCEGYGHIKAECPTHLKKQRKG 325
Query: 300 MVATWSDDDSEEEE---EPQIMGLTGKCNSEADSS--DGEISEEELAESYKLLLNKWEDA 354
+ SDD E+E + + LTG+ S DSS D EI+ +ELA SY+ L K E
Sbjct: 326 LSVCRSDDTESEQESDSDRDVNALTGRFESAEDSSDTDSEITFDELATSYRELCIKSEKI 385
Query: 355 CEMGKKLDETVKNLKAEKQNLLITNGNLQEEIIMLK*KIEGMIKSVRMLNKGTDVFDLIL 414
+ +L + + NL+AEK+ L+ E+ L K+E M KS++MLNKG+D+ D +L
Sbjct: 386 LQQEAQLKKVIANLEAEKEAHEEEISELKGEVGFLNSKLENMTKSIKMLNKGSDMLDEVL 445
Query: 415 EAGKEAKGRTGLGYTDNSGTEESKKITNT-FIPTAKKTEFTKTNQVIQHNTPQIYRQMPY 473
+ GK + GLG+ S + +IT T F+P T T + +H+ Q
Sbjct: 446 QLGKNVGNQRGLGFNHKS----AGRITMTEFVPAKISTGATMSQHRSRHHGTQ------- 494
Query: 474 SYPLSQKEINSRWRCHHCGKHGHIRPYCYRLYRTPQHWKPTQKNVSMKGRKWQPKNNVTA 533
+K +WRCH+CGK+GHI+P+CY L+ P H TQ + S + W PK+ + +
Sbjct: 495 ----QKKSKRKKWRCHYCGKYGHIKPFCYHLHGHPHH--GTQSSSSRRKMMWVPKHKIVS 548
Query: 534 LVAYTSLRASSKEDRYFDSGCSRHMTGVKMYLEHVKPHSPSFVTFGDGAKGKIKGSGKIV 593
LV +TSLRAS+KED Y DSGCSRHMTGVK +L +++P S S+VTFGDG+KGKI G GK+V
Sbjct: 549 LVVHTSLRASAKEDWYLDSGCSRHMTGVKEFLVNIEPCSTSYVTFGDGSKGKITGMGKLV 608
Query: 594 N 594
+
Sbjct: 609 H 609
>gb|AAG52949.1| gag/pol polyprotein [Arabidopsis thaliana]
Length = 1643
Score = 560 bits (1442), Expect = e-157
Identities = 331/908 (36%), Positives = 500/908 (54%), Gaps = 92/908 (10%)
Query: 1 MIAFLKSIDSKTWKSIVKRWKHPVKSDKEGTSTTELKPEEEWTKEEDEEALGNSKALNAI 60
M A ++ + + W + WK PV + G LK E++WT E+ +A NS+AL+ I
Sbjct: 28 MRALIRGLGKEAWIATSVGWKAPVVKGENGEDV--LKTEDQWTDAEEAKATANSRALSLI 85
Query: 61 FNGVDKNMFRLINTCTVAKDAWEILRVAHEGTTRVRVSRLQLLTTQFENLKMKEEETVFE 120
FN V++N F+ I C AK+AW+ L A+EGT+ V+ SR+ +L +QFENL M E E + E
Sbjct: 86 FNSVNQNQFKRIQNCESAKEAWDKLAKAYEGTSSVKRSRIDMLASQFENLTMDESENIEE 145
Query: 121 FHMKVRDMANASFALGEPMSEEKLVRKILRSLSKRFDMKVTAIEEAQDIGNIIVDELIGS 180
F K+ +A+ + LG+ ++KLV+K+LR L RF+ K TA+ + D I +E++G
Sbjct: 146 FSGKISAIASEAHNLGKKYKDKKLVKKLLRCLPSRFESKRTAMGTSLDTDTIDFEEVVGM 205
Query: 181 LQTFEMSLNERSEKKNKSIAFVSNTVDDDLSEKE*DENLSEAITLLGRKFNKVMRRFDRK 240
LQ +E+ + +K +A + SEK + L ++++++ + F++ M+R +++
Sbjct: 206 LQAYELEITSGKGGYSKGVALAVS------SEKNEIQELKDSMSMMAKNFSRAMKRVEKR 259
Query: 241 YRPNVTNKQSDIIKNSGNAL-KDKEEDKSIKAK*VQCHECEGYGHIRSECATFLKK---- 295
+N G+ +D++ D++ K +QCHEC+GYGHI++EC + +K
Sbjct: 260 ----------GFARNQGSDRDRDRDRDRNSKRSEIQCHECQGYGHIKAECPSLKRKDLKC 309
Query: 296 ---QGKG-----------------MVATWSDDDSEEEEEP-----QIMGLTGKCNSEADS 330
+G G + + SD D E+ EE +G+ N +DS
Sbjct: 310 SECRGIGHTKFDCIGSKSKPDRSYIAESDSDSDDEDSEEDVKGFVSFVGIIEDDNVSSDS 369
Query: 331 SDGEISEEE---------------------LAESYKLLLNKWEDACEMGKKLDETVKNLK 369
SD E+ E+ L E++ +L + E K+ E ++ LK
Sbjct: 370 SDSEVGCEKEEISADDESDVEMDVDGEFRKLYENWLVLSKEKVIWLEEKVKVQEQIEQLK 429
Query: 370 AE-------KQNLLITNGNLQEEIIMLK*KIEGMIKSVRMLNKGTDVFDLILEAGKEAKG 422
E K +++ +E+ L + K + MLNKGT D IL AG+ K
Sbjct: 430 GELAVANQIKSEMILKYSAKEEKNRELSQDLSDTRKKIHMLNKGTKDLDSILAAGRVGKS 489
Query: 423 RTGLGYTDNSGTEESKKI-TNTFIPTAKKTEF-TKTNQVIQHNTPQIYRQMPYSYPLSQK 480
GLGY + ++ + + PT ++ F +K+N V P + ++ SQ+
Sbjct: 490 NFGLGYHGGGSSTKTNFVRSKAAAPTQSQSVFRSKSNSV-----PARRKYQNQNHYHSQR 544
Query: 481 EINSRWRCHHCGKHGHIRPYCYRLYRTPQHWKPTQKNVSMKGRK---WQPKNNVTALVAY 537
+ + C++CG+HGHI+ YCYR K K +GR + + ++ VAY
Sbjct: 545 TVTG-YECYYCGRHGHIQRYCYRYAARLSKLKRQGKLYPHQGRNSKMYVRREDLYCHVAY 603
Query: 538 TSLRASSKEDRYFDSGCSRHMTGVKMYLEHVKPHSPSFVTFGDGAKGKIKGSGKIVNSDS 597
TS+ K+ YFDSG SRHMTG + L + S V FG GAKG+IKG G + ++
Sbjct: 604 TSIAEGVKKPWYFDSGASRHMTGSQANLNNYSSVKESNVMFGGGAKGRIKGKGDLTETEK 663
Query: 598 PRLTDVLLVEGLTANLISISQLCDLDLNVSFIKVGCRVTDENEEVVMIGIRSVDNCYMWS 657
P LT+V VEGLTANLIS+SQLCD L VSF KV C T+E + + G+R+ +NCYMW
Sbjct: 664 PHLTNVYFVEGLTANLISVSQLCDEGLTVSFNKVKCWATNERNQNTLTGVRTGNNCYMWE 723
Query: 658 PLSKGLITKCLVSKEEETKLWHKKLGHLNPKSMKKIITKEAIRGLPKLKIEEGKVCGECQ 717
CL +++E+ LWH++LGH+N +SM K++ KE +RG+P+LK E VCG C
Sbjct: 724 EPKI-----CLRAEKEDPVLWHQRLGHMNARSMSKLVNKEMVRGVPELKHIEKIVCGACN 778
Query: 718 IGKQTQAPYKKLTHIATSKSLELLHMDLMGPMQKESFGGKRYVFVCVDDFSRFTWVSFIA 777
GKQ + +K++ I T++ L+L+HMDLMGPMQ ES GKRYVFV VDDFSR+ WV FI
Sbjct: 779 QGKQIRVQHKRVEGIQTTQVLDLIHMDLMGPMQTESIAGKRYVFVLVDDFSRYAWVRFIR 838
Query: 778 EKSDTFEVFRELSQQLQREKGYGIVKIRSDHGKEFENSKFSEYCIKEGIKHEFSAPITTQ 837
EKS+T F+ L+ QL+ EK GI +IRSD G EF N F+ +C +GI H++SAP T Q
Sbjct: 839 EKSETANSFKILALQLKNEKKMGIKQIRSDRGGEFMNEAFNSFCESQGIFHQYSAPRTPQ 898
Query: 838 QNGVVEKK 845
NGVVE+K
Sbjct: 899 SNGVVERK 906
>gb|AAF18630.1| F5J5.1 [Arabidopsis thaliana] gi|25403474|pir||C86482 protein
F5J5.1 [imported] - Arabidopsis thaliana
Length = 1463
Score = 474 bits (1220), Expect = e-131
Identities = 293/875 (33%), Positives = 458/875 (51%), Gaps = 78/875 (8%)
Query: 1 MIAFLKSIDSKTWKSIVKRWKHPVKSDKEGTSTTELKPEEEWTKEEDEEALGNSKALNAI 60
M ++ W ++ + W+ P ++G T KP+ WT EE ++ N++A+NAI
Sbjct: 28 MTQIIRGQGEDAWTAVEEGWEPPFDLTEDGFKIT--KPKANWTAEEKLQSKFNARAMNAI 85
Query: 61 FNGVDKNMFRLINTCTVAKDAWEILRVAHEGTTRVRVSRLQLLTTQFENLKMKEEETVFE 120
NG+D++ F+LI C AK AW+ L+ +HEGT+ V+ +RL + TQFE LKM+ ET+ +
Sbjct: 86 VNGIDEDEFKLIQGCKSAKQAWDTLQKSHEGTSSVKRTRLDHIATQFEYLKMEPYETIVK 145
Query: 121 FHMKVRDMANASFALGEPMSEEKLVRKILRSLSKRFDMKVTAIEEAQDIGNIIVDELIGS 180
F K+ +AN + LG+ ++KLV+K+LR L +F + A + I +L+G
Sbjct: 146 FSSKISALANEAEVLGKTYKDQKLVKKLLRCLPPKFPAHKAVMRVAGNTDKISFVDLVGM 205
Query: 181 LQTFEMSLNERSEKKNKSIAFVSNTVDDDLSEKE*DENLSEAITLLGRKFNKVMRRFDRK 240
L++ EM ++ K +K+IAF ++ + + + + + LL R F K ++R +R
Sbjct: 206 LKSEEMEPDQDKVKPSKNIAFNADQGSEQFQQ------IKDGMALLARNFGKALKRVERG 259
Query: 241 YRPNVTNKQSDIIKNSGNALKDKEEDKSIKAK*VQCH---ECEGYGHIRSECATFLKKQG 297
+ T+ + + S E D K K +QC+ E + G F+
Sbjct: 260 QNRDSTSWSNKDGETSRGRFSRSENDDLGKKKEIQCYDDPESDDEGEELLNFVAFMASSD 319
Query: 298 KGMVATWSDDDSEEEEEPQIMGLTGKCNSEADSSDGEISEEELAESYKLLLNKWEDACEM 357
V + +D D ++E P+ + Y++L + W +
Sbjct: 320 SSKVMSDTDSDCDQEVNPK-------------------------DEYRVLYDSWMQLKDK 354
Query: 358 GK----KLDETVKNLKAEKQNLLITNGNLQEEII-MLK*KIEGMIKSVRMLNKGTDVFDL 412
K +DE ++ +K + L +++ + +L+ ++ K +RMLNKG++ D
Sbjct: 355 QKLSGITVDENSQDYYQKKFDWLQEECHMERDRAKLLERELNDKHKQIRMLNKGSESLDK 414
Query: 413 ILEAGKEAKGRTGLGYTDNSG--TEESKKITN-----TFIPTAKKTEFTKTNQVIQHNTP 465
IL G+ GLGY +G +E ++ N + T + +T+ + ++ +
Sbjct: 415 ILAMGRTDSQPRGLGYQGYTGKINKEEGRVINFVSGGSTSETVVRQSYTEPKKQVKSHVE 474
Query: 466 QIYRQMPYSYPLSQKEINSRWRCHHCGKHGHIRPYCYRLYRTPQHWKPTQKNV-SMKGRK 524
+ + +K++ Y Y+L R + + +V + ++
Sbjct: 475 TKGECFVRTRMIKKKDLYGDMEAER---------YNYKLERMYEEEEMHYASVYNQVNKE 525
Query: 525 WQPKNNVT--------------ALVAYTSLRASSKEDRYFDSGCSRHMTGVKMYLEHVKP 570
Q + N+ A VAYTS+ + + YFDSGCSRHMTGV+ L+
Sbjct: 526 MQDEANLVCNWNLSELDDCTPQAKVAYTSVVSQNNRAWYFDSGCSRHMTGVQSILKDFSV 585
Query: 571 HSPSFVTFGDGAKGKIKGSGKIVNSDSPRLTDVLLVEGLTANLISISQLCDLDLNVSFIK 630
+ VTFGDG KG IKG GKI D P L++V VEGLTANLISISQLCD DL V+F K
Sbjct: 586 INNGKVTFGDGGKGSIKGKGKIEIDDQPHLSNVYFVEGLTANLISISQLCDDDLTVTFTK 645
Query: 631 VGCRVTDENEEVVMIGIRSVDNCYMWSPLSKGLITKCLVSKEEETKLWHKKLGHLNPKSM 690
GC D V+ G+ S +NCYMW CL + + LWH++L H+N +S+
Sbjct: 646 TGCVALDIAGNNVLSGVCSGNNCYMWKDSEV-----CLSAITSKLDLWHQRLRHMNTQSL 700
Query: 691 KKIITKEAIRGLPKLKIEEGKVCGECQIGKQTQAPYKKLTHIATSKSLELLHMDLMGPMQ 750
KI+ + +RG+PKL+ VC C GKQ + K+ THI T+ LEL+HMDLMGP+Q
Sbjct: 701 VKIVNADVVRGIPKLEGSTSVVCKTCSQGKQVKVQQKRATHIGTTSVLELVHMDLMGPVQ 760
Query: 751 KESFGGKRYVFVCVDDFSRFTWVSFIAEKSDTFEVFRELSQQLQREKGYGIVKIRSDHGK 810
ES GK+Y+ V VDD+SRFTWV F+ EK + E F+ L+ QLQ EKG +V+IRSDHG
Sbjct: 761 TESLSGKKYILVLVDDYSRFTWVRFLREKFEAAESFKILALQLQTEKG-NLVQIRSDHGG 819
Query: 811 EFENSKFSEYCIKEGIKHEFSAPITTQQNGVVEKK 845
EF+N +F ++C +GI+H+FSAP T QQ+GVVE+K
Sbjct: 820 EFQNEEFEKFCRIQGIRHQFSAPRTPQQSGVVERK 854
>dbj|BAB11308.1| copia-like retroelement pol polyprotein [Arabidopsis thaliana]
Length = 1013
Score = 429 bits (1103), Expect = e-118
Identities = 271/805 (33%), Positives = 421/805 (51%), Gaps = 90/805 (11%)
Query: 1 MIAFLKSIDSKTWKSIVKRWKHPVKSDKEGTSTTELKPEEEWTKEEDEEALGNSKALNAI 60
M A ++ + + W + WK PV + G LK E++WT E+ +A NS+AL+ I
Sbjct: 28 MRALIRGLGKEAWIATSVGWKAPVVKGENGEDV--LKTEDQWTDAEEAKATANSRALSLI 85
Query: 61 FNGVDKNMFRLINTCTVAKDAWEILRVAHEGTTRVRVSRLQLLTTQFENLKMKEEETVFE 120
FN V++N F+ I C AK+AW+ L A+EGT+ V+ SR+ +L +QFENL M E E + E
Sbjct: 86 FNSVNQNQFKRIQNCESAKEAWDKLAKAYEGTSSVKRSRIDMLASQFENLTMDESENIEE 145
Query: 121 FHMKVRDMANASFALGEPMSEEKLVRKILRSLSKRFDMKVTAIEEAQDIGNIIVDELIGS 180
F K+ +A+ + LG+ ++KLV+K+LR L RF+ K TA+ + D I +E++G
Sbjct: 146 FSGKISAIASEAHNLGKKYKDKKLVKKLLRCLPSRFESKRTAMGTSLDTDTIDFEEVVGM 205
Query: 181 LQTFEMSLNERSEKKNKSIAFVSNTVDDDLSEKE*DENLSEAITLLGRKFNKVMRRFDRK 240
LQ +E+ + +K +A + SEK + L ++++++ + F++ M+R ++
Sbjct: 206 LQAYELEITSGKGGYSKGVALAVS------SEKNEIQELKDSMSMMAKNFSRAMKRVEK- 258
Query: 241 YRPNVTNKQSDIIKNSGNALKDKEEDKSIKAK*VQCHECEGYGHIRSECATFLKK----- 295
R N+ SD +D++ D++ K +QCHEC+GYGHI++EC + +K
Sbjct: 259 -RGFARNQGSD-------RDRDRDRDRNSKRSEIQCHECQGYGHIKAECPSLKRKDLKCS 310
Query: 296 --QGKG-----------------MVATWSDDDSEEEEEP-----QIMGLTGKCNSEADSS 331
+G G + + SD D E+ EE +G+ N +DSS
Sbjct: 311 ECRGIGHTKFDCIGSKSKPDRSYIAESDSDSDDEDSEEDVKGFVSFVGIIEDDNVSSDSS 370
Query: 332 DGEISEE---------------------ELAESYKLLLNKWEDACEMGKKLDETVKNLKA 370
D E+ E +L E++ +L + E K+ E ++ LK
Sbjct: 371 DSEVGCEKEEISADDESDVEMDVDGEFRKLYENWLVLSKEKVIWLEEKVKVQEQIEQLKG 430
Query: 371 E-------KQNLLITNGNLQEEIIMLK*KIEGMIKSVRMLNKGTDVFDLILEAGKEAKGR 423
E K +++ +E+ L + K + MLNKGT D IL AG+ K
Sbjct: 431 ELAVANQIKSEMILKYSAKEEKNRELSQDLSDTRKKIHMLNKGTKDLDSILAAGRVGKSN 490
Query: 424 TGLGY-TDNSGTEESKKITNTFIPTAKKTEF-TKTNQVIQHNTPQIYRQMPYSYPLSQKE 481
GLGY S T+ + + PT ++ F +K+N V P + ++ SQ+
Sbjct: 491 FGLGYHGGGSSTKTNFVRSKAAAPTQSQSVFRSKSNSV-----PARRKYQNQNHYHSQRT 545
Query: 482 INSRWRCHHCGKHGHIRPYCYRLYRTPQHWKPTQKNVSMKGRK---WQPKNNVTALVAYT 538
+ + C++CG+HGHI+ YCYR K K +GR + + ++ VAYT
Sbjct: 546 VTG-YECYYCGRHGHIQRYCYRYAARLSKLKRQGKLYPHQGRNSKMYVRREDLYCHVAYT 604
Query: 539 SLRASSKEDRYFDSGCSRHMTGVKMYLEHVKPHSPSFVTFGDGAKGKIKGSGKIVNSDSP 598
S+ K+ YFDSG SRHMTG + L + S V FG GAKG+IKG G + ++ P
Sbjct: 605 SIAEGVKKPWYFDSGASRHMTGSQANLNNYSSVKESNVMFGGGAKGRIKGKGDLTETEKP 664
Query: 599 RLTDVLLVEGLTANLISISQLCDLDLNVSFIKVGCRVTDENEEVVMIGIRSVDNCYMWSP 658
LT+V VEGLTANLIS+SQLCD L VSF KV C T+E + + G+R+ +NCYMW
Sbjct: 665 HLTNVYFVEGLTANLISVSQLCDEGLTVSFNKVKCWATNERNQNTLTGVRTGNNCYMWEE 724
Query: 659 LSKGLITKCLVSKEEETKLWHKKLGHLNPKSMKKIITKEAIRGLPKLKIEEGKVCGECQI 718
CL +++E+ LWH++LGH+N +SM K++ KE +RG+P+LK E VCG C
Sbjct: 725 PK-----ICLRAEKEDPVLWHQRLGHMNARSMSKLVNKEMVRGVPELKHIEKIVCGACNQ 779
Query: 719 GKQTQAPYKKLTHIATSKSLELLHM 743
GKQ + +K++ I K+ L M
Sbjct: 780 GKQIRVQHKRVEGIVERKNRTLQEM 804
>emb|CAB77910.1| putative transposon protein [Arabidopsis thaliana]
gi|4773881|gb|AAD29754.1| putative transposon protein
[Arabidopsis thaliana] gi|25407270|pir||H85055 probable
transposon protein [imported] - Arabidopsis thaliana
Length = 1008
Score = 402 bits (1032), Expect = e-110
Identities = 259/797 (32%), Positives = 414/797 (51%), Gaps = 91/797 (11%)
Query: 1 MIAFLKSIDSKTWKSIVKRWKHPVKSDKEGTSTTELKPEEEWTKEEDEEALGNSKALNAI 60
M A ++ + + W + WK PV ++G LK +++W E+ +A NS+AL+ I
Sbjct: 28 MRALIRGLGKEAWIATSIGWKAPVIKGEDGEDV--LKTKDQWNDAEEAKAKANSRALSLI 85
Query: 61 FNGVDKNMFRLINTCTVAKDAWEILRVAHEGTTRVRVSRLQLLTTQFENLKMKEEETVFE 120
FN V++N F+ I C AK+AW+ L A+EGT+ V+ SR+ +L +QFENL M+E E + E
Sbjct: 86 FNFVNQNQFKRIQNCESAKEAWDKLAKAYEGTSSVKRSRIDMLASQFENLSMEETENIEE 145
Query: 121 FHMKVRDMANASFALGEPMSEEKLVRKILRSLSKRFDMKVTAIEEAQDIGNIIVDELIGS 180
F K+ +A+ + LG+ ++KLV+K+LR L RF+ K TA+ + D +I +E++G
Sbjct: 146 FSGKISAIASEAHNLGKKYKDKKLVKKLLRCLPSRFESKRTAMGTSLDTDSIDFEEVVGM 205
Query: 181 LQTFEMSLNERSEKKNKSIAFVSNTVDDDLSEKE*DENLSEAITLLGRKFNKVMRRFDRK 240
LQ +E+ + +K +A ++ +++ E L + ++++ + F++ MRR ++K
Sbjct: 206 LQAYELEITSGKGGYSKGLALAASAKKNEIQE------LKDTMSMMAKDFSRAMRRVEKK 259
Query: 241 YRPNVTNKQSDIIKNSGNALKDKEEDKSIKAK*VQCHECEGYGHIRSECATFLKKQGK-- 298
+N G D+ D+S K +QCHEC+GYGHI++EC + +K K
Sbjct: 260 ----------GFGRNQGT---DRYRDRSSKRDEIQCHECQGYGHIKAECPSLKRKDLKCS 306
Query: 299 ---GMVATWSD------------------DDSEEEEEPQIMGLTG----------KCNSE 327
G+ T D D ++ + E I G +SE
Sbjct: 307 ECNGLGHTKFDCVGSKSKPDKSCSSESESDSNDGDSEDYIKGFVSFVGIIEEKDESSDSE 366
Query: 328 ADSSDGEISEEE---------LAESYKLLLNKW-----EDACEMGKKL--DETVKNLKAE 371
AD D + S +E + E ++ L + W E + +KL E + LK E
Sbjct: 367 ADGEDEDNSADEDSDIEKDVNINEEFRKLYDSWLMLSKEKVAWLEEKLKVQELTEKLKGE 426
Query: 372 ------KQNLLITNGNLQEEIIM-LK*KIEGMIKSVRMLNKGTDVFDLILEAGKEAKGRT 424
K + LI ++ EE L ++ K++ MLN GT D IL AG+ K
Sbjct: 427 LTAANQKNSELIQKCSVAEEKNRELSQELSDTRKNIHMLNSGTKDLDSILAAGRVGKSNF 486
Query: 425 GLGYTD-NSGTEESKKITNTFIPTAKKTEFTKTNQVIQHNTPQIYRQMPYSYPLSQKEIN 483
GLGY SGT+ + + PT +T F + ++Y+ + + S++ +
Sbjct: 487 GLGYNGAGSGTKTNFVRSEAAAPTKSQTGFRSNYDAVP--ARRVYQN--HDHYQSRRTVT 542
Query: 484 SRWRCHHCGKHGHIRPYCYRLYRTPQHWKPTQKNVSMKGR---KWQPKNNVTALVAYTSL 540
+ C++CG+HGHI+ YCYR K K +GR + + ++ VAYTS+
Sbjct: 543 G-YECYYCGRHGHIQRYCYRYAARLNKLKRQGKLYPYQGRTSKMYVRREDLYCHVAYTSI 601
Query: 541 RASSKEDRYFDSGCSRHMTGVKMYLEHVKPHSPSFVTFGDGAKGKIKGSGKIVNSDSPRL 600
K+ YFDSG SRHM G + LE+ S VTFG G K KIKG G + ++ P+L
Sbjct: 602 EEGIKKPWYFDSGASRHMVGSQSNLENYTSVKESKVTFGGGDKRKIKGKGDLTKAEKPQL 661
Query: 601 TDVLLVEGLTANLISISQLCDLDLNVSFIKVGCRVTDENEEVVMIGIRSVDNCYMWSPLS 660
T+V VEGLTANLIS+SQLCD L VSF V C T+E + + G+R+ +NCYMW
Sbjct: 662 TNVYFVEGLTANLISVSQLCDEGLTVSFNSVKCWATNEKNQNTLTGVRTGNNCYMWEEPK 721
Query: 661 KGLITKCLVSKEEETKLWHKKLGHLNPKSMKKIITKEAIRGLPKLKIEEGKVCGECQIGK 720
+CL +++E+ +WH++LGH+N +SM +I++KE +RG+ +LK E V GK
Sbjct: 722 -----ECLRAEKEDPVVWHQRLGHMNARSMSEIVSKEMVRGVQELKHIEKIVYDAYNQGK 776
Query: 721 QTQAPYKKLTHIATSKS 737
Q + +K++ + K+
Sbjct: 777 QIRVQHKRVVGVVERKN 793
>gb|AAN40030.1| putative gag-pol polyprotein [Zea mays]
Length = 2319
Score = 275 bits (702), Expect = 1e-71
Identities = 239/910 (26%), Positives = 389/910 (42%), Gaps = 147/910 (16%)
Query: 40 EEWTKEEDEEALGNSKALNAIFNGVDKNMFRLINTCTVAKDAWEILRVAHEGTTRVRVSR 99
EE T E +E N++A++ I + +R + A+D W ILR++HEG + + R
Sbjct: 168 EEMTPEMMQEVHRNAQAVSIIKGSLCPEEYRKVQGREDARDIWNILRMSHEGDPKAKRHR 227
Query: 100 LQLLTTQFENLKMKEEETVFEFHMKVRDMANASFALG-EPMSEEKLVRKILRSLSKRFDM 158
++ L ++ + E++ ++ + N LG E S+ K+ R +R+ ++
Sbjct: 228 VEALESELARYDWTKGESLQSLFDRLMVLVNKIRVLGSEDWSDSKVTRLFMRAYKEKDKS 287
Query: 159 KVTAIEEAQDIGNIIVDELIGSLQTFEMSLNERSEKKNKSIAFVSNTVDDDLSEKE*--- 215
I + D ++ +L +Q E E K S A ++N D+ K+
Sbjct: 288 LARMIRDRDDYEDMTPHQLFAKIQQHESE--EAPIKTRDSHALITNEQDNLKKSKDHKAK 345
Query: 216 ---------DENLSEAITLLGRKFNKVMRRFDRKYRPNVTNKQSDIIKNSGNALKDKEED 266
D + E + + F K +R+ D+ R
Sbjct: 346 KVVETSSDEDSSSDEDTAMFIKTFKKFVRKNDKFQR------------------------ 381
Query: 267 KSIKAK*VQCHECEGYGHIRSECAT-----------------------FLKKQGKGMV-- 301
K K C+EC GH ++C + KK+ G
Sbjct: 382 ---KGKKRACYECGQTGHFIADCPNKKEQEAKKEYKKDKFKKGGKTKGYFKKKKYGQAHI 438
Query: 302 -ATWSDDD--SEEEEEPQIMGLTGKCNSEAD-------------------------SSD- 332
W+ DD S EEE + + + S A S+D
Sbjct: 439 GEEWNSDDESSSSEEEEVVANVAIQSTSSAQLFTNLQDDSYIPTCLMAKGDKVTLFSNDF 498
Query: 333 -GEISEEELAESYKLL----LNKWEDACEMGKKLDETVKNLKAEKQNLLIT---NGNLQE 384
+ ++++A K++ LN + ++ +KLD+ L A++ L++ N LQE
Sbjct: 499 SNDDDDDQIAMKNKMIKEFGLNGYNVITKLMEKLDKRKATLDAQEDLLILEKERNLELQE 558
Query: 385 -------EIIMLK*KIEGMIK-------SVRMLNKGTDVFDLILEAGKEAKGRTGLGYTD 430
E+I LK I+ + S+ LN + LE K T + +
Sbjct: 559 LIHNKDIEVINLKTSIDNLANEKNALESSMLSLNVQNQELQVQLENCKNINAPTLVFESK 618
Query: 431 NSGTEESKKITNTFIPTAKKTEFTKTNQVIQHNTPQIYRQMPYSYPLSQKEINSRWRCHH 490
+S + S K + + T + + Q +I ++ + L + E + +
Sbjct: 619 SSSNDNSCKHCAKYHASCCLTNHARKHSP-QVKVEEILKRCSSNDGLKKVEPKYKSLKPN 677
Query: 491 CGKHGHIRPYCYRLYRTPQHWKPTQKNVSMKGRKWQPKNNVTALVAYTSL-RASSKEDR- 548
G+ G + +++N S + W+ + Y +L R S D+
Sbjct: 678 NGRRG-------------LGFNSSKENPSTVHKGWRSPKFIEGTTLYDALGRIHSSNDKS 724
Query: 549 -----------YFDSGCSRHMTGVK-MYLEHVKPHSPSFVTFGDGAKGKIKGSGKIVNSD 596
DSGC+ HMTG K M+ + FGD K K+ G GKI SD
Sbjct: 725 SQVYSSGGSSWVLDSGCTNHMTGEKDMFHTLQLTQEAQEIVFGDSGKSKVIGIGKIPISD 784
Query: 597 SPRLTDVLLVEGLTANLISISQLCDLDLNVSFIKVGCRVTDENEEVVMIGIRSVDNCYMW 656
L++VLLV+ L+ NL+S+SQLC + N F V ++ + V R Y+
Sbjct: 785 QQSLSNVLLVDSLSYNLLSVSQLCGMGYNCLFSDVDVKILRREDSSVAFTGRLKGKLYLV 844
Query: 657 S-PLSKGLITKCLVSKEEETKLWHKKLGHLNPKSMKKIITKEAIRGLPKLKIEEGKVCGE 715
SK CLV+K ++ LWH++L H+ +++ K+ I GL + E+ +VCG
Sbjct: 845 DFTTSKVTPETCLVAKSDKGWLWHRRLAHVGMRNLAKLQKDNHIIGLTNVVFEKDRVCGA 904
Query: 716 CQIGKQTQAPYKKLTHIATSKSLELLHMDLMGPMQKESFGGKRYVFVCVDDFSRFTWVSF 775
CQ GKQ P++ + T + LELLHMDL GP+ S GG +Y V VDDFSRFTWV F
Sbjct: 905 CQAGKQHGVPHQSKNVVTTKRPLELLHMDLFGPVAYISIGGSKYGLVIVDDFSRFTWVFF 964
Query: 776 IAEKSDTFEVFRELSQQLQREKGYGIVKIRSDHGKEFENSKFSEYCIKEGIKHEFSAPIT 835
+++K +T E+ ++ ++ Q E I K+RSD+G EF+N+ E+ +EGIKHEFS P T
Sbjct: 965 LSDKGETQEILKKFMRRAQNEFELKIKKVRSDNGTEFKNTGVEEFLGEEGIKHEFSVPYT 1024
Query: 836 TQQNGVVEKK 845
QQNGVVE+K
Sbjct: 1025 PQQNGVVERK 1034
>emb|CAD40009.3| OSJNBb0052B05.12 [Oryza sativa (japonica cultivar-group)]
gi|50922011|ref|XP_471366.1| OSJNBb0052B05.12 [Oryza
sativa (japonica cultivar-group)]
Length = 1549
Score = 241 bits (616), Expect = 1e-61
Identities = 133/336 (39%), Positives = 193/336 (56%), Gaps = 3/336 (0%)
Query: 513 PTQKNVSMKGRKWQPKNNVTALVAYTSLRASSKEDRYFDSGCSRHMTGVKMYLEHVKPHS 572
P KN+S+K W PK VT + S DSGC+ HMTG + + P+
Sbjct: 663 PRGKNISIKRVLWVPKALVTNMRGPKQEYVSGGRSWVIDSGCTNHMTGEESMFSSLDPNG 722
Query: 573 PSF--VTFGDGAKGKIKGSGKIVNSDSPRLTDVLLVEGLTANLISISQLCDLDLNVSFIK 630
S + FGD KGK+ G GKI S+ +++VLLV+ L NL+S+SQLC + N F
Sbjct: 723 TSQENIIFGDDGKGKVIGLGKIAISNDLSISNVLLVKSLNYNLLSVSQLCSMGFNCLFTD 782
Query: 631 VGCRVTDENEEVVMI-GIRSVDNCYMWSPLSKGLITKCLVSKEEETKLWHKKLGHLNPKS 689
V V ++ +V+ G+ + +K CLV+K LWH++L H+ ++
Sbjct: 783 VDVTVFRRDDSLVVFKGVLKGKLYLVDFSSTKAKHETCLVAKSNTGWLWHRRLAHVGMRN 842
Query: 690 MKKIITKEAIRGLPKLKIEEGKVCGECQIGKQTQAPYKKLTHIATSKSLELLHMDLMGPM 749
+ K++ + I GL ++ E+ +VC CQ GKQ A + + T++ LELLHMDL GP+
Sbjct: 843 LHKLLKHDHILGLTNVQFEKDRVCSACQAGKQIGAHHPVKNVMTTTRPLELLHMDLFGPI 902
Query: 750 QKESFGGKRYVFVCVDDFSRFTWVSFIAEKSDTFEVFRELSQQLQREKGYGIVKIRSDHG 809
S GG +Y V VDDFSRFTWV F+ +KS+T +F++ +++ Q E I IRSD+G
Sbjct: 903 AYLSIGGNKYGLVIVDDFSRFTWVFFLHDKSETQAIFKKFARRAQNEFDLKIKNIRSDNG 962
Query: 810 KEFENSKFSEYCIKEGIKHEFSAPITTQQNGVVEKK 845
KEF+N+ + +EGIKHEFSAP + QQNGV E+K
Sbjct: 963 KEFKNTCIESFLDEEGIKHEFSAPYSPQQNGVAERK 998
Score = 96.3 bits (238), Expect = 7e-18
Identities = 90/350 (25%), Positives = 147/350 (41%), Gaps = 49/350 (14%)
Query: 5 LKSIDSKTWKSIVKRWKHPVKSDKEGTSTTELKPEEEWTKEEDEEALGNSKALNAIFNGV 64
LKSI+ W+ + K + L+ EE TKE DE N++A NAI + +
Sbjct: 55 LKSINPLIWRIVEKGYV--------------LQNPEEPTKENDENEHKNAQAANAILSAL 100
Query: 65 DKNMFRLINTCTVAKDAWEILRVAHEGTTRVRVSRLQLLTTQFENLKMKEEETVFEFHMK 124
+ F ++ AK W+ LR HEGT VR S +++L QFE M + E+ + + +
Sbjct: 101 SGSEFNRVDGIESAKVIWDTLRNLHEGTDSVRESMVEILKGQFERFVMLDGESPSDMYDR 160
Query: 125 VRDMANASFALG-EPMSEEKLVRKILRSLSKRFDMKVTAIEEAQDIGNIIVDELIGSLQT 183
+ + N LG + M++E +V+K++++++ R VT I E D + +L+G +
Sbjct: 161 LSKIVNEIKGLGSKDMTDEVVVKKMVQAITPRNSTLVTIIRERPDYKTLTPHDLLGRILA 220
Query: 184 FEMSLNERSE-------------KKNKSIAFVSNTVDDDLSEKE*DENLSEAITLLGRKF 230
+M E E KK + K E E + L +KF
Sbjct: 221 HDMLEQESKEVIQYINQTLTTSIKKENLALKAKEEEEQSRKSKSKAEIDDEEMALFVKKF 280
Query: 231 NKVMRRFDRKYRPNVTNKQSDIIKNSGNALKDKEEDKSIKAK*VQCHECEGYGHIRSEC- 289
+K M KQS K G++ K S + C+ C+ GH ++C
Sbjct: 281 DKFM-------------KQSGFFK--GSSSKHSSNKSSGRHSARLCYVCKEPGHFIADCP 325
Query: 290 ----ATFLKKQGKGMVATWSDDDSEEEEEPQI-MGLTGKCNSEADSSDGE 334
KK K + S+ + Q +G+ +SE+ SSD E
Sbjct: 326 HIKDCPHFKKDNKKLEKKEKHKHSKHDRYGQTHLGMIFGSDSESSSSDEE 375
>ref|XP_474304.1| OSJNBb0004A17.2 [Oryza sativa (japonica cultivar-group)]
gi|32488723|emb|CAE03600.1| OSJNBb0004A17.2 [Oryza sativa
(japonica cultivar-group)]
Length = 1877
Score = 241 bits (616), Expect = 1e-61
Identities = 163/522 (31%), Positives = 252/522 (48%), Gaps = 74/522 (14%)
Query: 398 KSVRMLNKGTDVFDLILEAGKEAKGRTGLGY----TDNSGTEESKKITNTFIPTAKKTEF 453
+S+ +G ++IL+ K + G+GY + GT E +T+ I A+K
Sbjct: 614 QSLERFAQGKKKLNMILDQSKVSINNQGIGYDFAESLRIGTHEILGVTDGMIELAQKPIT 673
Query: 454 TKTNQVIQHNT------------PQIYRQMPYSYPLSQ--KEIN-------------SRW 486
K+ I + + P + P P + K++ +++
Sbjct: 674 FKSAGFIGNTSSSTPKTSEPKMVPMTSKSKPVELPRPKNPKQVEHKQNQRQTKPVEKTKY 733
Query: 487 RCHHCGKHGHIRPYCYRLYRTPQHWKPTQKNVSMKGRKWQ-------------------P 527
C +CGK GH+ +C+R R + + + + +++ P
Sbjct: 734 ECTYCGKAGHLVGFCFRKARKERQERLRTRRATRVPERFECAYHCRSSGVSRFPRRDVHP 793
Query: 528 KNNVTAL-------VAYTSLR-----ASSKEDRYF----------DSGCSRHMTG-VKMY 564
+ ++ L +AY S +S+ D F DSGCSRHMTG K +
Sbjct: 794 RRDLAGLGQNRHGHLAYNSAHNTKDACTSRTDSDFGVGRSNSWLVDSGCSRHMTGEAKWF 853
Query: 565 LEHVKPHSPSFVTFGDGAKGKIKGSGKIVNSDSPRLTDVLLVEGLTANLISISQLCDLDL 624
+ S +TFGD + G++ G I +D L DV LV L NL+S+SQLCD +L
Sbjct: 854 TSLTRASSDETITFGDASSGRVMAKGTIKVNDKFMLKDVALVSKLKYNLLSVSQLCDENL 913
Query: 625 NVSFIKVGCRVTDENEEVVMIGIRSVDNCYMWSPLSKGLITKCLVSKEE-ETKLWHKKLG 683
V F K RV D +E V R + S ++CL++ E + WH++LG
Sbjct: 914 EVRFKKDRSRVLDASESPVFDISRVGRVFFANFDSSAPGPSRCLIASENRDLFFWHRRLG 973
Query: 684 HLNPKSMKKIITKEAIRGLPKLKIEEGKVCGECQIGKQTQAPYKKLTHIATSKSLELLHM 743
H+ + +I + IRGLPKLK+ + VC C+ GK T + +K +T + T +LLHM
Sbjct: 974 HIGFDHLSRISGMDLIRGLPKLKVPKDLVCAPCRHGKMTSSSHKPVTMVMTDGPGQLLHM 1033
Query: 744 DLMGPMQKESFGGKRYVFVCVDDFSRFTWVSFIAEKSDTFEVFRELSQQLQREKGYGIVK 803
D +GP + +S GGK YV V VDDFSR++WV F+ K +TF F+ L++ L E +
Sbjct: 1034 DTVGPARVQSVGGKWYVLVVVDDFSRYSWVYFLESKEETFGFFQSLARSLALEFPGALRA 1093
Query: 804 IRSDHGKEFENSKFSEYCIKEGIKHEFSAPITTQQNGVVEKK 845
IRSD+G EF+NS F +C G++H+FS+P QQNGVVE+K
Sbjct: 1094 IRSDNGSEFKNSAFESFCDSSGVEHQFSSPYVPQQNGVVERK 1135
Score = 65.1 bits (157), Expect = 2e-08
Identities = 55/247 (22%), Positives = 101/247 (40%), Gaps = 8/247 (3%)
Query: 53 NSKALNAIFNGVDKNMFRLINTCTVAKDAWEILRVAHEGTTRVRVSRLQLLTTQFENLKM 112
N +A NAI G+ F + A D W L HEG +++ R +++ +M
Sbjct: 62 NYRARNAIIGGISSGEFNRVQHHKSAHDMWTALCNFHEGNNDIQLVRQNQFHKEYQRFEM 121
Query: 113 KEEETVFEFHMKVRDMANASFALGEPMSEEKLVRKILRSLSKR-FDMKVTAIEEAQDIGN 171
E++ + + ++ + ++G+ S+ R +L L ++MKVT+I E+ + +
Sbjct: 122 HPGESIDSYFKRFGEIISKLRSVGKEFSDNDNARHLLNCLDYGVWEMKVTSITESAPLSD 181
Query: 172 IIVDELIGSLQTFEMSLNERSEKKNKSIAFVSNTVDDDLSEKE*DENLSEAITLLGRKFN 231
+ +D+L L+T EM + R K+ S+A V++ S ++ L
Sbjct: 182 LTMDKLYSKLKTHEMDVFHRKGLKH-SMALVADPSGSTSSNDSAFVYGGFSLAALHSVTE 240
Query: 232 KVMRRFDRKYRPNVTNKQSDIIKNSGNALKDKEEDKSIKAK*VQCHECEGYGHIRSECAT 291
+ + + K S KN + + K + + C EC H R C
Sbjct: 241 EQLEKIPEDDLALFARKFSRAYKNVRDRKRGKTNEPFV------CFECGEPNHKRVNCPK 294
Query: 292 FLKKQGK 298
KK K
Sbjct: 295 LKKKSDK 301
>gb|AAL76004.1| putative gag-pol polyprotein [Zea mays]
Length = 1694
Score = 235 bits (600), Expect = 8e-60
Identities = 151/466 (32%), Positives = 234/466 (49%), Gaps = 26/466 (5%)
Query: 392 KIEGMIKSVRMLNKGTDVFDLILEAGKEAKGRTGLGYTDNSGTEESKKITNTFIPTAKKT 451
K++ I + N+ +L G+ + G+G+ + S P + +
Sbjct: 677 KLDAKIAEHNLENEKFKFARSMLYNGRRPGIKDGIGFQRGDNVKISA-------PPKRLS 729
Query: 452 EFTKTNQVIQHNTPQIYRQMPYSYPLSQ-KEINSRWRCHHCGKHGHIRPYCYRLYRTPQH 510
F K + + + Y P YP ++ ++I+SR + H H + R P
Sbjct: 730 NFVKGKAPMPQDN-EGYILYPAGYPENKIRKIHSR-KSHSGSNHAFMYKSETSSSRQPTR 787
Query: 511 WKPTQKNVSMKGRKWQPKNNVTALVAYTSLRASSKEDRYF---------DSGCSRHMTGV 561
K +K +++ +N++ S ++K + + DSGC+ HMTG
Sbjct: 788 AKLPKKKITIASND----HNISFKTFDASYVLTNKSGKVYASGGSSWILDSGCTNHMTGE 843
Query: 562 KMYLEHVKPHSPS--FVTFGDGAKGKIKGSGKIVNSDSPRLTDVLLVEGLTANLISISQL 619
K + + S +TFGDG +G +KG GKI S +++V LV+ L NL+S+SQL
Sbjct: 844 KKMFSSYEKNQDSQRAITFGDGNQGLVKGLGKIAISPDHSISNVFLVDSLDYNLLSVSQL 903
Query: 620 CDLDLNVSFIKVGCRVTDENEEVVMIGIRSVDNCYMWSPLSKGLITKCLVSKEEETKLWH 679
C + N F VG V +++ + Y+ + + CL++K LWH
Sbjct: 904 CQMGYNCLFTDVGVTVFRRSDDSIAFKGVLEGQLYLVD-FDRAELDNCLIAKTNMGWLWH 962
Query: 680 KKLGHLNPKSMKKIITKEAIRGLPKLKIEEGKVCGECQIGKQTQAPYKKLTHIATSKSLE 739
++L H+ K++ K++ E I GL + E+ ++C CQ GKQ A + + T + LE
Sbjct: 963 RRLAHVGMKNLHKLLKGEHILGLTNVHFEKDRICSACQAGKQVGAHHPHKNIMTTDRPLE 1022
Query: 740 LLHMDLMGPMQKESFGGKRYVFVCVDDFSRFTWVSFIAEKSDTFEVFRELSQQLQREKGY 799
LLHMDL GP+ S GG +Y V VDD+SRFTWV F+ EKS T E + ++ Q E G
Sbjct: 1023 LLHMDLFGPIAYISIGGSKYCLVIVDDYSRFTWVFFLQEKSQTQETLKGFLRRTQNEFGL 1082
Query: 800 GIVKIRSDHGKEFENSKFSEYCIKEGIKHEFSAPITTQQNGVVEKK 845
I KIRSD+G EF+NS+ + +EGIKHEFS+P T QQNGVVE+K
Sbjct: 1083 RIKKIRSDNGTEFKNSQIEGFLEEEGIKHEFSSPYTPQQNGVVERK 1128
Score = 54.3 bits (129), Expect = 3e-05
Identities = 54/253 (21%), Positives = 110/253 (43%), Gaps = 20/253 (7%)
Query: 44 KEEDEEALG-----NSKALNAIFNGVDKNMFRLINTCTVAKDAWEILRVAHEGTTRVRVS 98
K+ DE+ + NS+A + + + + + AK+ W++L+ AHEG +++
Sbjct: 173 KDYDEDEVAQIEHFNSQATTILLASLSREEYNKVQGLKSAKEVWDVLKTAHEGDELTKIT 232
Query: 99 RLQLLTTQFENLKMKEEETVFEFHMKVRDMANASFAL-GEPMSEEKLVRKILRSLSKRFD 157
+ + + + ++++ E + +++ + N L + + ++V+ ILRSL
Sbjct: 233 KRETIEGELGRFRLRKGEEPQHMYNRLKTLVNQVCNLESKKWDDHEMVKVILRSLIFLNP 292
Query: 158 MKVTAIEEAQDIGNIIVDELIGSLQTFEMSLNERSEKKNKSIAFVSNTVDDDLSEKE*DE 217
+V I + +E+IG+ +FE + E S K NK DD S E
Sbjct: 293 TQVQLIRGNPRYTKMTPEEVIGNFVSFECMI-EGSRKINKL---------DDPSTSEAQP 342
Query: 218 NLSEAITLLGRKFNKVMRRFDRKYRPNVTNKQSDIIKNSGNALKDKE-EDKSIKAK*VQC 276
+A + + D N + + +IK+ LK + +D ++K V C
Sbjct: 343 VAFKATEEKKEESTPSRQPIDASKLDN--EEMALVIKSFRQILKQRRGKDYKSRSKKV-C 399
Query: 277 HECEGYGHIRSEC 289
++C GH ++C
Sbjct: 400 YKCGKPGHFIAKC 412
>gb|AAN60494.1| Putative Zea mays retrotransposon Opie-2 [Oryza sativa (japonica
cultivar-group)] gi|34902378|ref|NP_912535.1| Putative
Zea mays retrotransposon Opie-2 [Oryza sativa (japonica
cultivar-group)]
Length = 2145
Score = 231 bits (589), Expect = 1e-58
Identities = 151/461 (32%), Positives = 223/461 (47%), Gaps = 34/461 (7%)
Query: 398 KSVRMLNKGTDVFDLILEAGKEAKGRTGLGY----TDNSGTEESKKITNTFIPTAKKTEF 453
+S+ +G ++IL+ K + G+GY + GT E +T+ I A+K
Sbjct: 614 QSLERFAQGKKKLNMILDQSKVSINNQGIGYDFAESLRIGTHEILGVTDGMIELAQKPIT 673
Query: 454 TKTNQVIQHNTPQIYRQM-PYSYPLSQKEINSRWRCHHCGKHGHIRPYCYRLYRTPQHWK 512
K+ I + + + P P++ K + P+
Sbjct: 674 FKSAGFIGNTSSSTPKTSEPKMVPMTSKS---------------------KPVELPRPKN 712
Query: 513 PTQKNVSMKGRKWQPKNNVTALVAYTS------LRASSKEDRYFDSGCSRHMTG-VKMYL 565
P Q R+ +P Y DSGCSRHMTG K +
Sbjct: 713 PKQVEHKQNQRQTKPVEKTKYECTYCGKAGHLDFGVGRSNSWLVDSGCSRHMTGEAKWFT 772
Query: 566 EHVKPHSPSFVTFGDGAKGKIKGSGKIVNSDSPRLTDVLLVEGLTANLISISQLCDLDLN 625
+ S +TFGD + G++ G I +D L DV LV L NL+S+SQLCD +L
Sbjct: 773 SLTRASSDETITFGDASSGRVMAKGTIKVNDKFMLKDVALVSKLKYNLLSVSQLCDENLE 832
Query: 626 VSFIKVGCRVTDENEEVVMIGIRSVDNCYMWSPLSKGLITKCLVSKEE-ETKLWHKKLGH 684
V F K RV D +E V R + S ++CL++ E + WH++LGH
Sbjct: 833 VRFKKDRSRVLDASESPVFDISRVGRVFFANFDSSAPGPSRCLIASENRDLFFWHRRLGH 892
Query: 685 LNPKSMKKIITKEAIRGLPKLKIEEGKVCGECQIGKQTQAPYKKLTHIATSKSLELLHMD 744
+ + +I + IRGLPKLK+ + VC C+ GK T + +K +T + T +LLHMD
Sbjct: 893 IGFDHLSRISGMDLIRGLPKLKVPKDLVCAPCRHGKMTSSSHKPVTMVMTDGPGQLLHMD 952
Query: 745 LMGPMQKESFGGKRYVFVCVDDFSRFTWVSFIAEKSDTFEVFRELSQQLQREKGYGIVKI 804
+GP + +S GGK YV V VDDFSR++WV F+ K +TF F+ L++ L E + I
Sbjct: 953 TVGPARVQSVGGKWYVLVVVDDFSRYSWVYFLESKEETFGFFQSLARSLALEFPGALRAI 1012
Query: 805 RSDHGKEFENSKFSEYCIKEGIKHEFSAPITTQQNGVVEKK 845
RSD+G EF+NS F +C G++H+FS+P QQNGVVE+K
Sbjct: 1013 RSDNGSEFKNSAFESFCDSSGVEHQFSSPYVPQQNGVVERK 1053
Score = 65.1 bits (157), Expect = 2e-08
Identities = 55/247 (22%), Positives = 101/247 (40%), Gaps = 8/247 (3%)
Query: 53 NSKALNAIFNGVDKNMFRLINTCTVAKDAWEILRVAHEGTTRVRVSRLQLLTTQFENLKM 112
N +A NAI G+ F + A D W L HEG +++ R +++ +M
Sbjct: 62 NYRARNAIIGGISSGEFNRVQHHKSAHDMWTALCNFHEGNNDIQLVRQNQFHKEYQRFEM 121
Query: 113 KEEETVFEFHMKVRDMANASFALGEPMSEEKLVRKILRSLSKR-FDMKVTAIEEAQDIGN 171
E++ + + ++ + ++G+ S+ R +L L ++MKVT+I E+ + +
Sbjct: 122 HPGESIDSYFKRFGEIISKLRSVGKEFSDNDNARHLLNCLDYGVWEMKVTSITESAPLSD 181
Query: 172 IIVDELIGSLQTFEMSLNERSEKKNKSIAFVSNTVDDDLSEKE*DENLSEAITLLGRKFN 231
+ +D+L L+T EM + R K+ S+A V++ S ++ L
Sbjct: 182 LTMDKLYSKLKTHEMDVFHRKGLKH-SMALVADPSGSTSSNDSAFVYGGFSLAALHSVTE 240
Query: 232 KVMRRFDRKYRPNVTNKQSDIIKNSGNALKDKEEDKSIKAK*VQCHECEGYGHIRSECAT 291
+ + + K S KN + + K + + C EC H R C
Sbjct: 241 EQLEKIPEDDLALFARKFSRAYKNVRDRKRGKTNEPFV------CFECGEPNHKRVNCPK 294
Query: 292 FLKKQGK 298
KK K
Sbjct: 295 LKKKSDK 301
>ref|NP_910082.1| putative gag-pol polyprotein [Oryza sativa (japonica cultivar-group)]
gi|28269414|gb|AAO37957.1| putative gag-pol polyprotein
[Oryza sativa (japonica cultivar-group)]
Length = 1969
Score = 231 bits (588), Expect = 2e-58
Identities = 150/461 (32%), Positives = 223/461 (47%), Gaps = 34/461 (7%)
Query: 398 KSVRMLNKGTDVFDLILEAGKEAKGRTGLGY----TDNSGTEESKKITNTFIPTAKKTEF 453
+S+ +G ++IL+ K + G+GY + GT E +T+ I A+K
Sbjct: 614 QSLERFAQGKKKLNMILDQSKVSINNQGIGYDFAESLRIGTHEILGVTDGMIELAQKPIT 673
Query: 454 TKTNQVIQHNTPQIYRQM-PYSYPLSQKEINSRWRCHHCGKHGHIRPYCYRLYRTPQHWK 512
K+ I + + + P P++ K + P+
Sbjct: 674 FKSAGFIGNTSSSTPKTSEPKMVPMTSKS---------------------KPVELPRPKN 712
Query: 513 PTQKNVSMKGRKWQPKNNVTALVAYTS------LRASSKEDRYFDSGCSRHMTG-VKMYL 565
P Q R+ +P Y DSGCSRHMTG K +
Sbjct: 713 PKQVEHKQNQRQTKPVEKTKYECTYCGKAGHLDFGVGRSNSWLVDSGCSRHMTGEAKWFT 772
Query: 566 EHVKPHSPSFVTFGDGAKGKIKGSGKIVNSDSPRLTDVLLVEGLTANLISISQLCDLDLN 625
+ +TFGD + G++ G I +D L DV LV L NL+S+SQLCD +L
Sbjct: 773 SLTRASGDETITFGDASSGRVMAKGTIKVNDKFMLKDVALVSKLKYNLLSVSQLCDENLE 832
Query: 626 VSFIKVGCRVTDENEEVVMIGIRSVDNCYMWSPLSKGLITKCLVSKEE-ETKLWHKKLGH 684
V F K RV D +E V R + S ++CL++ E + WH++LGH
Sbjct: 833 VRFKKDRSRVLDASESPVFDISRVGRVFFANFDSSAPGPSRCLIASENRDLFFWHRRLGH 892
Query: 685 LNPKSMKKIITKEAIRGLPKLKIEEGKVCGECQIGKQTQAPYKKLTHIATSKSLELLHMD 744
+ + +I + IRGLPKLK+++ VC C+ GK T + +K +T + T +LLHMD
Sbjct: 893 IGFDHLSRISGMDLIRGLPKLKVQKDLVCAPCRHGKMTSSSHKPVTMVMTDGPGQLLHMD 952
Query: 745 LMGPMQKESFGGKRYVFVCVDDFSRFTWVSFIAEKSDTFEVFRELSQQLQREKGYGIVKI 804
+GP + +S GGK YV V VDDFSR++WV F+ K +TF F+ L++ L E + I
Sbjct: 953 TVGPARVQSVGGKWYVLVVVDDFSRYSWVYFLESKEETFGFFQSLARSLALEFPGALRAI 1012
Query: 805 RSDHGKEFENSKFSEYCIKEGIKHEFSAPITTQQNGVVEKK 845
RSD+G EF+NS F +C G++H+FS+P QQNGVVE+K
Sbjct: 1013 RSDNGSEFKNSAFESFCDSSGVEHQFSSPYVPQQNGVVERK 1053
Score = 65.1 bits (157), Expect = 2e-08
Identities = 55/247 (22%), Positives = 101/247 (40%), Gaps = 8/247 (3%)
Query: 53 NSKALNAIFNGVDKNMFRLINTCTVAKDAWEILRVAHEGTTRVRVSRLQLLTTQFENLKM 112
N +A NAI G+ F + A D W L HEG +++ R +++ +M
Sbjct: 62 NYRARNAIIGGISSGEFNRVQHHKSAHDMWTALCNFHEGNNDIQLVRQNQFHKEYQRFEM 121
Query: 113 KEEETVFEFHMKVRDMANASFALGEPMSEEKLVRKILRSLSKR-FDMKVTAIEEAQDIGN 171
E++ + + ++ + ++G+ S+ R +L L ++MKVT+I E+ + +
Sbjct: 122 HPGESIDSYFKRFGEIISKLRSVGKEFSDNDNARHLLNCLDYGVWEMKVTSITESAPLSD 181
Query: 172 IIVDELIGSLQTFEMSLNERSEKKNKSIAFVSNTVDDDLSEKE*DENLSEAITLLGRKFN 231
+ +D+L L+T EM + R K+ S+A V++ S ++ L
Sbjct: 182 LTMDKLYSKLKTHEMDVFHRKGLKH-SMALVADPSGSTSSNDSAFVYGGFSLAALHSVTE 240
Query: 232 KVMRRFDRKYRPNVTNKQSDIIKNSGNALKDKEEDKSIKAK*VQCHECEGYGHIRSECAT 291
+ + + K S KN + + K + + C EC H R C
Sbjct: 241 EQLEKIPEDDLALFARKFSRAYKNVRDRKRGKTNEPFV------CFECGEPNHKRVNCPK 294
Query: 292 FLKKQGK 298
KK K
Sbjct: 295 LKKKSDK 301
>gb|AAC49502.1| Pol [Zea mays] gi|7489803|pir||T04112 pol protein homolog - maize
retrotransposon Opie-2
Length = 1068
Score = 228 bits (580), Expect = 2e-57
Identities = 125/307 (40%), Positives = 178/307 (57%), Gaps = 3/307 (0%)
Query: 542 ASSKEDRYFDSGCSRHMTGVK-MYLEHVK-PHSPSFVTFGDGAKGKIKGSGKIVNSDSPR 599
AS DSGC+ HMTG K M+ +VK S + FGDG +GK+KG GKI S+
Sbjct: 5 ASGGSSWIIDSGCTNHMTGEKKMFTSYVKNKDSQDSIIFGDGNQGKVKGLGKIAISNEHS 64
Query: 600 LTDVLLVEGLTANLISISQLCDLDLNVSFIKVGCRVTDENE-EVVMIGIRSVDNCYMWSP 658
+++V LVE L NL+S+SQLC++ N F + V + + G+ +
Sbjct: 65 ISNVFLVESLGYNLLSVSQLCNMGYNCLFTNIDVSVFRRCDGSLAFKGVLDGKLYLVDFA 124
Query: 659 LSKGLITKCLVSKEEETKLWHKKLGHLNPKSMKKIITKEAIRGLPKLKIEEGKVCGECQI 718
+ + CL++K LWH++L H+ K++ K++ E + GL ++ E+ + C CQ
Sbjct: 125 KEEAGLDACLIAKTSMGWLWHRRLAHVGMKNLHKLLKGEHVIGLTNVQFEKDRPCAACQA 184
Query: 719 GKQTQAPYKKLTHIATSKSLELLHMDLMGPMQKESFGGKRYVFVCVDDFSRFTWVSFIAE 778
GKQ + + TS+ LE+LHMDL GP+ S GG +Y V VDDFSRFTWV F+ E
Sbjct: 185 GKQVGGSHHTKNVMTTSRPLEMLHMDLFGPVAYLSIGGSKYGLVIVDDFSRFTWVFFLQE 244
Query: 779 KSDTFEVFRELSQQLQREKGYGIVKIRSDHGKEFENSKFSEYCIKEGIKHEFSAPITTQQ 838
KS+T + ++ Q E + KIRSD+G EF+N + E+ +EGIKHEFSAP T QQ
Sbjct: 245 KSETQGTLKRFLRRAQNEFELKVKKIRSDNGSEFKNLQVEEFLEEEGIKHEFSAPYTPQQ 304
Query: 839 NGVVEKK 845
NGVVE+K
Sbjct: 305 NGVVERK 311
>gb|AAP52089.1| putative polyprotein [Oryza sativa (japonica cultivar-group)]
gi|37531000|ref|NP_919802.1| putative polyprotein [Oryza
sativa (japonica cultivar-group)]
gi|16519476|gb|AAL25185.1| Putative polyprotein [Oryza
sativa]
Length = 1407
Score = 226 bits (576), Expect = 5e-57
Identities = 129/336 (38%), Positives = 185/336 (54%), Gaps = 3/336 (0%)
Query: 513 PTQKNVSMKGRKWQPKNNVTALVAYTSLRASSKEDRYFDSGCSRHMTGVKMYLEHVKPHS 572
P KNVS+K W PK VT + S DSGC+ HMTG + + P+
Sbjct: 665 PRGKNVSIKRVLWVPKALVTNMRGPKQEYLSGGRSWVIDSGCTNHMTGEESMFCSLDPNG 724
Query: 573 P--SFVTFGDGAKGKIKGSGKIVNSDSPRLTDVLLVEGLTANLISISQLCDLDLNVSFIK 630
+ FGD KGK+ G GKI + +++VLLV+ L NL+S+SQLC + N F
Sbjct: 725 SLQENIVFGDDGKGKVMGLGKIAIYNDLSISNVLLVKSLNYNLLSVSQLCSMGYNCLFTD 784
Query: 631 VGCRV-TDENEEVVMIGIRSVDNCYMWSPLSKGLITKCLVSKEEETKLWHKKLGHLNPKS 689
V V ++ +V G+ + +K CLV+K + LWH++L H+ ++
Sbjct: 785 VDVTVFRRDDSSIVFKGVLKGKLYLVDFSSTKAKHETCLVAKSDMGWLWHRRLAHVGMRN 844
Query: 690 MKKIITKEAIRGLPKLKIEEGKVCGECQIGKQTQAPYKKLTHIATSKSLELLHMDLMGPM 749
+ K++ + I GL + E+ VC CQ KQ A + + T++ LE LHMDL GP+
Sbjct: 845 LHKLLKHDHILGLTNVLFEKDMVCSACQARKQIGAHHPVKNVMTTTRPLEFLHMDLFGPI 904
Query: 750 QKESFGGKRYVFVCVDDFSRFTWVSFIAEKSDTFEVFRELSQQLQREKGYGIVKIRSDHG 809
S GG +Y V VDDFSRFTWV F+ +KS+T +F++ +++ Q E I IRSD+G
Sbjct: 905 AYLSIGGNKYGLVIVDDFSRFTWVFFLHDKSETQAIFKKFARRAQNEFDLKIKNIRSDNG 964
Query: 810 KEFENSKFSEYCIKEGIKHEFSAPITTQQNGVVEKK 845
KEF+N + +EGIKHEFSA + QQNGV E+K
Sbjct: 965 KEFKNMCIESFLDEEGIKHEFSAAYSPQQNGVAERK 1000
Score = 93.2 bits (230), Expect = 6e-17
Identities = 74/282 (26%), Positives = 131/282 (46%), Gaps = 33/282 (11%)
Query: 5 LKSIDSKTWKSIVKRWKHPVKSDKEGTSTTELKPEEEWTKEEDEEALGNSKALNAIFNGV 64
LKSI+ W+ + K + L+ E+ TKE+DE N++A NAI + +
Sbjct: 55 LKSINPSIWRIVEKGYV--------------LQNPEDPTKEDDENEHKNAQAANAILSAL 100
Query: 65 DKNMFRLINTCTVAKDAWEILRVAHEGTTRVRVSRLQLLTTQFENLKMKEEETVFEFHMK 124
+ F ++ AK W+ LR HEG VR S++++L QFE M + E+ + + +
Sbjct: 101 SGSEFNRVDGIESAKVIWDTLRNLHEGMDSVRESKVEILKGQFERFVMLDGESPSDMYDR 160
Query: 125 VRDMANASFALG-EPMSEEKLVRKILRSLSKRFDMKVTAIEEAQDIGNIIVDELIGSLQT 183
+ + N LG + M++E +V+K++R+++ R VT I E D + +L+G +
Sbjct: 161 LSKIINEIKGLGSKDMTDEVVVKKMVRAITPRNSTLVTIIHERPDYKTLTPHDLLGRILA 220
Query: 184 FEMSLNERSE-------------KKNKSIAFVSNTVDDDLSEKE*DENLSEAITLLGRKF 230
+M + E E KK +++ K +E E + L +KF
Sbjct: 221 HDMLVQESKEVIQYINQSSTTSIKKEDLALKAKEEEEENHKSKSKEEIDDEEMALFVKKF 280
Query: 231 NKVMRR---FDRKYRPNVTNKQS--DIIKNSGNALKDKEEDK 267
K MRR F + +NK S ++ + +DK++D+
Sbjct: 281 GKFMRRSGFFKGNSSKHHSNKSSGRHSARDGSHIKEDKKKDE 322
>ref|NP_909107.1| unnamed protein product [Oryza sativa (japonica cultivar-group)]
Length = 1410
Score = 226 bits (575), Expect = 6e-57
Identities = 124/297 (41%), Positives = 173/297 (57%), Gaps = 2/297 (0%)
Query: 551 DSGCSRHMTG-VKMYLEHVKPHSPSFVTFGDGAKGKIKGSGKIVNSDSPRLTDVLLVEGL 609
DSGCSRHMTG K + + +TFGD + G++ G I +D L DV LV L
Sbjct: 372 DSGCSRHMTGEAKWFTSLTRASGDETITFGDASSGRVMAKGTIKVNDKFMLKDVALVSKL 431
Query: 610 TANLISISQLCDLDLNVSFIKVGCRVTDENEEVVMIGIRSVDNCYMWSPLSKGLITKCLV 669
NL+S+SQLCD +L V F K RV D +E V R + S ++CLV
Sbjct: 432 KYNLLSVSQLCDENLEVRFKKDRSRVLDASESPVFDISRVGRVFFANFDSSAPGPSRCLV 491
Query: 670 SKEE-ETKLWHKKLGHLNPKSMKKIITKEAIRGLPKLKIEEGKVCGECQIGKQTQAPYKK 728
+ E + WH++LGH+ + +I + IRGLPKLK + VC C+ GK T + +K
Sbjct: 492 ASENRDLFFWHRRLGHIGFDHLSRISGMDLIRGLPKLKAPKDLVCAPCRHGKMTSSSHKP 551
Query: 729 LTHIATSKSLELLHMDLMGPMQKESFGGKRYVFVCVDDFSRFTWVSFIAEKSDTFEVFRE 788
+T + T +LLHM+ +GP + +S GGK YV V VDDFSR++WV F+ K +TF F+
Sbjct: 552 VTMVMTDGPGQLLHMNTVGPARVQSVGGKWYVLVVVDDFSRYSWVYFLESKEETFGFFQS 611
Query: 789 LSQQLQREKGYGIVKIRSDHGKEFENSKFSEYCIKEGIKHEFSAPITTQQNGVVEKK 845
L++ L E + IRSD+G EF+NS F +C G++H+FS+P QQNGVVE+K
Sbjct: 612 LARSLALEFPGALRAIRSDNGSEFKNSAFESFCDSSGVEHQFSSPYVPQQNGVVERK 668
Score = 69.7 bits (169), Expect = 7e-10
Identities = 57/247 (23%), Positives = 102/247 (41%), Gaps = 8/247 (3%)
Query: 53 NSKALNAIFNGVDKNMFRLINTCTVAKDAWEILRVAHEGTTRVRVSRLQLLTTQFENLKM 112
N +A NAI G+ F + A D W L HEG +++ R +++ +M
Sbjct: 39 NYRARNAIIGGISSGEFNRVQHHKSAHDMWTALCNFHEGNNDIQLVRQNQFHKEYQRFEM 98
Query: 113 KEEETVFEFHMKVRDMANASFALGEPMSEEKLVRKILRSLSKR-FDMKVTAIEEAQDIGN 171
E++ + + ++ + ++G+ S+ R +L L ++MKVT+I E+ + +
Sbjct: 99 HPGESIDSYFKRFGEIVSKLRSVGKEFSDNDNARHLLNCLDYGVWEMKVTSITESAPLSD 158
Query: 172 IIVDELIGSLQTFEMSLNERSEKKNKSIAFVSNTVDDDLSEKE*DENLSEAITLLGRKFN 231
+ +D+L L+T EM + R K+ S+A V++ S ++ L
Sbjct: 159 LTMDKLYSKLKTHEMDVFHRKGLKH-SMALVADPSGSTSSNDSAFVCGGFSLAALHSVTE 217
Query: 232 KVMRRFDRKYRPNVTNKQSDIIKNSGNALKDKEEDKSIKAK*VQCHECEGYGHIRSECAT 291
+ + + K S KN N + K + + C EC HIR C
Sbjct: 218 EQLEKIPEDDLALFARKFSRAYKNVRNKKRGKTNEPFV------CFECGEPNHIRVNCPK 271
Query: 292 FLKKQGK 298
KK K
Sbjct: 272 LKKKSDK 278
Database: nr
Posted date: Jul 5, 2005 12:34 AM
Number of letters in database: 863,360,394
Number of sequences in database: 2,540,612
Lambda K H
0.339 0.147 0.472
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,249,824,795
Number of Sequences: 2540612
Number of extensions: 86291765
Number of successful extensions: 387864
Number of sequences better than 10.0: 1924
Number of HSP's better than 10.0 without gapping: 772
Number of HSP's successfully gapped in prelim test: 1182
Number of HSP's that attempted gapping in prelim test: 382345
Number of HSP's gapped (non-prelim): 4331
length of query: 1558
length of database: 863,360,394
effective HSP length: 142
effective length of query: 1416
effective length of database: 502,593,490
effective search space: 711672381840
effective search space used: 711672381840
T: 11
A: 40
X1: 15 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 39 (21.9 bits)
S2: 82 (36.2 bits)
Lotus: description of TM0192.13