BLAST2 result
BLASTP 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TM0191.8
(1758 letters)
Database: nr
2,540,612 sequences; 863,360,394 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAP54617.1| putative non-LTR retroelement reverse transcripta... 818 0.0
gb|AAB82639.1| putative non-LTR retroelement reverse transcripta... 804 0.0
gb|AAD21778.1| putative non-LTR retroelement reverse transcripta... 768 0.0
gb|AAV32224.1| hypothetical protein [Oryza sativa (japonica cult... 764 0.0
pir||T00833 RNA-directed DNA polymerase homolog T13L16.7 - Arabi... 753 0.0
gb|AAD20714.1| putative non-LTR retroelement reverse transcripta... 751 0.0
gb|AAQ19327.1| bZIP-like protein [Oryza sativa (japonica cultiva... 744 0.0
gb|AAD24831.1| putative non-LTR retroelement reverse transcripta... 732 0.0
gb|AAD03565.2| putative non-LTR retroelement reverse transcripta... 731 0.0
gb|AAC33961.1| contains similarity to reverse trancriptase (Pfam... 685 0.0
gb|AAG51783.1| reverse transcriptase, putative; 16838-20266 [Ara... 676 0.0
pir||S65812 RNA-directed DNA polymerase (EC 2.7.7.49) (clone DW1... 666 0.0
emb|CAB78094.1| RNA-directed DNA polymerase-like protein [Arabid... 655 0.0
gb|AAX95232.1| retrotransposon protein, putative, unclassified [... 650 0.0
pir||G86379 protein F5A9.24 [imported] - Arabidopsis thaliana gi... 648 0.0
gb|AAF97969.1| F21J9.30 [Arabidopsis thaliana] 648 0.0
gb|AAD24601.1| putative non-LTR retroelement reverse transcripta... 632 e-179
gb|AAD29058.1| putative non-LTR retroelement reverse transcripta... 632 e-179
gb|AAP53315.1| putative reverse transcriptase [Oryza sativa (jap... 624 e-177
emb|CAB81184.1| putative protein [Arabidopsis thaliana] gi|45393... 613 e-173
>gb|AAP54617.1| putative non-LTR retroelement reverse transcriptase [Oryza sativa
(japonica cultivar-group)] gi|37536056|ref|NP_922330.1|
putative non-LTR retroelement reverse transcriptase
[Oryza sativa (japonica cultivar-group)]
gi|10140689|gb|AAG13524.1| putative non-LTR retroelement
reverse transcriptase [Oryza sativa (japonica
cultivar-group)]
Length = 1382
Score = 818 bits (2113), Expect = 0.0
Identities = 476/1392 (34%), Positives = 752/1392 (53%), Gaps = 45/1392 (3%)
Query: 398 KTISW--NCRGVGSPRTVKVLQRIIKAEDPDIVFLMETHKKNGELKNIVARLGFKNHLGV 455
K ++W NCRG+GS TV L+ ++K+ P +VFL ET ++ + +N++ LGF V
Sbjct: 5 KLVTWGRNCRGLGSAATVGELRWLVKSLRPSLVFLSETKMRDKQARNLMWSLGFSGSFAV 64
Query: 456 ECRGEGRSSGGGLALLWKEDFNIDIISYSLHHITASHTNADQITCFLTGFYGYPESQNKI 515
C G GGLAL W + + + ++ H I + + ++ YG P+ + +
Sbjct: 65 SCEG----LSGGLALFWTTAYTVSLRGFNSHFIDVLVSTEELPPWRISFVYGEPKRELRH 120
Query: 516 KSWDLLVRLKGETSGPWMCFGDFNEITSNAEKKGGIDRPIEHMKKFVRCLNQCGLEDMGF 575
W+LL RL + GPW+C GDFNE+ E G +R HM+ F CL+ CGL D+GF
Sbjct: 121 FFWNLLRRLHDQWRGPWLCCGDFNEVLCLDEHLGMRERSEPHMQHFRSCLDDCGLIDLGF 180
Query: 576 QGDPFTWCNGRKDEAHIQERLDRGVISQSFKEIWPASSVQHLLRYNSDHAPLLITVTSQP 635
G FTW N + ++ + RLDR V + F + V++++ +SDH + I ++ +
Sbjct: 181 VGPKFTWSNKQDANSNSKVRLDRAVANGEFSRYFEDCLVENVITTSSDHYAISIDLSRRN 240
Query: 636 IEEGKKKKKKLFRFEQHLTLNHELAFHLRQAWQ---SGGDNAEQKLAQAKETIMALE--- 689
+ + ++ FRFE + + +W+ +G + ++ ++L+
Sbjct: 241 HGQRRIPIQQGFRFEAAWLRAEDYREVVENSWRISSAGCVGLRGVWSVLQQVAVSLKDWS 300
Query: 690 -TEFGSIRKKLHDLEQRLKAAQKWNPTEENIMRRKEMENEFAELMGREELYWRQRSRATW 748
FGS+R+K+ +E++LK+ ++ + I K +E + EL +EE+ RQRSR W
Sbjct: 301 KASFGSVRRKILKMERKLKSLRQSPVNDVVIQEEKLIEQQLCELFEKEEIMARQRSRVDW 360
Query: 749 LKEGDKNTSFFHGKANQRQKQNRIARIRDDHGNWVYKQDQVTTAFSNYFEGIFKSSQPNN 808
L+EGD+NT+FFH +A+ R++ NRI + D G+ Q+ + ++E +F S ++
Sbjct: 361 LREGDRNTAFFHARASARRRTNRIKELVRDDGSRCISQEGIKRMAEVFYENLFSSEPCDS 420
Query: 809 IEEVCQKIQNKLNQEMREHLEEEFTADEVAYALNQMHPLKAPGPDGFPALFYQKYWKLVG 868
+EEV I NK+ + L +++T +E+ AL QM KAPGPDGFPALFYQ +W ++
Sbjct: 421 MEEVLDAIPNKVGDFINGELGKQYTNEEIKTALFQMGSTKAPGPDGFPALFYQTHWGILE 480
Query: 869 GDVTSQVLEILNKGVDPASLNQTFICLIPKVKAPENPMEFRPISLCNVIMKLVTKCIANR 928
+ + V L P L + + LIPKV + +FRPISLCNV+ K+ +K +ANR
Sbjct: 481 EHICNAVRGFLLGEEIPEGLCDSVVVLIPKVNNASHLSKFRPISLCNVLYKIASKVLANR 540
Query: 929 IKDVLGEVVGEQQSAFIPGRLITDNALTGFEVFHYMKKKRKGKKGYMALKLDMSKAYDRI 988
+K L ++V E QSAF+PGRLITD+AL +E H ++K+ K + ALK+DM KAYDR+
Sbjct: 541 LKPFLPDIVSEFQSAFVPGRLITDSALVAYECLHTIRKQHN-KNPFFALKIDMMKAYDRV 599
Query: 989 EWDFLKQVLTTMGFPSKITELISICVSSVSYSLLVNGEPSPPFSPQRGLRQGDPLSPYLF 1048
EW +L L+ +GF + CVSSV Y++ +NGE + P P RG+RQGDP+SPYLF
Sbjct: 600 EWAYLSGCLSKLGFSQDWINTVMRCVSSVRYAVKINGELTKPVVPSRGIRQGDPISPYLF 659
Query: 1049 ILCVEAFSGLISNQIRLRNLHGIKVARGAPPINHLFFADDSLIFSRATQEEASSLLDVIR 1108
+LC E S L+ + L GIK R PPI+HL FADDS+ F++A +L + +R
Sbjct: 660 LLCTEGLSCLLHKKEVAGELQGIKNGRHGPPISHLLFADDSIFFAKADSRNVQALKNTLR 719
Query: 1109 QYEQASGQLVNMDKSEISFSRNVPQTSMDTIRNRMGVKAVIVHDKYLGLPTVIGHSKKAI 1168
Y ASGQ +N+ KS I F + P ++++ + V ++ D YLG+PT IG +
Sbjct: 720 SYCSASGQKINLHKSSIFFGKRCPDAVKISVKSCLQVDNEVLQDSYLGMPTEIGLATTNF 779
Query: 1169 FGKIQERVWRKLKGWKEKTLSKAGKEILIKAVAQAIPSYVMSCFKLPNGICSKIESLLAN 1228
F + ER+W+++ GW ++ LS+AG E ++KAVAQAIP+YVMSCF++P IC K+++ +A+
Sbjct: 780 FKFLPERIWKRVNGWTDRPLSRAGMETMLKAVAQAIPNYVMSCFRIPVSICEKMKTCIAD 839
Query: 1229 FWWGQKENERKIHWAAWQHLCKTKNRGDLGFRNLEDFNRALLAKQAWRLLNSEKSLLYKV 1288
WWG ++ ++K+HW +W L K G +GFR FN+A+L +Q WRLL SL +V
Sbjct: 840 HWWGFEDGKKKMHWKSWSWLSTPKFLGGMGFREFTTFNQAMLGRQCWRLLTDPDSLCSRV 899
Query: 1289 WKAKYFPKCDLLKAGVGYQPSYAWRSVWGTLKFIEEGCKWSIGNGKKVSIWKDPWLPGPD 1348
K +YFP +A PS+ WRS+ + + +G +W +G+GK + I+ D W+PG
Sbjct: 900 LKGRYFPNSSFWEAAQPKSPSFTWRSLLFGRELLAKGVRWGVGDGKTIKIFSDNWIPGFR 959
Query: 1349 SGYVRTQDVPEFAHEKVSDLRLWEGGSWNISKIDQLFNPAEAQLIKSIRLSWRDSEDKLI 1408
V T P VS L + W+ I LF A+ I I +S D
Sbjct: 960 PQLVTTLS-PFPTDATVSCLMNEDARCWDGDLIRSLFPVDIAKEILQIPISRHGDADFAS 1018
Query: 1409 WRWSRDGMFSVKSAYYQIQSQKIAATASGSNSPSFS--------WKTLWRVKIQNKVKHF 1460
W + G++SV+SAY +S+ A S S S WK LW++ K+K
Sbjct: 1019 WPHDKLGLYSVRSAYNLARSEAFFADQSNSGRGMASRLLESQKDWKGLWKINAPGKMKIT 1078
Query: 1461 MYRVINNLTPCRANLARRGIQIQEQCALCSQDVVETQDHLFLQCSWARAAWFHHSLGLRM 1520
++R + L RR I + C C++D +T +H+FL C +A W +
Sbjct: 1079 LWRAAHECLATGFQLRRRHIPSTDGCVFCNRD--DTVEHVFLFCPFAAQIWEEIKGKCAV 1136
Query: 1521 DLVQTSF---LEWLQSFC---ANQEDEIVAQVFHGTWAIWKARNESLFNNVQVHPATAME 1574
L + F +W+ F ++ + ++A F W IW+ARN + NN VHP +
Sbjct: 1137 KLGRNGFSTMRQWIFDFLKRGSSHANTLLAVTF---WHIWEARNNTKNNNGTVHPQRVVI 1193
Query: 1575 KAQNLLAEWKEAQEHHAPCVQEKRP------QQWSAPSQGRIKINVDAG-WSGPHSTGLG 1627
K +L+ +H+ V +R +W P IN DA +S + G+G
Sbjct: 1194 K---ILSYVDMILKHNTKTVDGQRGGNTQAIPRWQPPPASVWMINSDAAIFSSSRTMGVG 1250
Query: 1628 FVARDHRGIIMLAGTCLEAQRLDPLIAEAMALRWSLHTALEVSLDSVIFKLDSISVVKAM 1687
+ RD+ G ++A + + + + P +AEA+A+R +L A E L+ ++ D ++V++ +
Sbjct: 1251 ALIRDNTGKCLVACSEMISDVVLPELAEALAIRRALGLAKEEGLEHIVMASDCLTVIRRI 1310
Query: 1688 RTNS-SLWTIQNLM*DCIYLASLFTSISFNHVSRNANVPAHTLASLACSYNTKLWWDVPP 1746
+T+ + ++ D LAS F SF HV+R +N+ AH+LA A ++ V P
Sbjct: 1311 QTSGRDRSGVGCVIEDIKKLASTFVLCSFMHVNRLSNLAAHSLARNAELSTCTVYRSVIP 1370
Query: 1747 PEIEQALFVDAA 1758
I L D A
Sbjct: 1371 DYIRDILCDDVA 1382
>gb|AAB82639.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
thaliana] gi|25408936|pir||A84888 hypothetical protein
At2g45230 [imported] - Arabidopsis thaliana
Length = 1374
Score = 804 bits (2076), Expect = 0.0
Identities = 465/1384 (33%), Positives = 723/1384 (51%), Gaps = 57/1384 (4%)
Query: 397 MKTISWNCRGVGSPRTVKVLQRIIKAEDPDIVFLMETHKKNGELKNIVARLGFKNHLGVE 456
M+ +SWNC+GVG+ TV+ L+ I P+++FL ET K+ L+N+V LGF + VE
Sbjct: 1 MRILSWNCQGVGNTPTVRHLREIRGLYFPEVIFLCETKKRRNYLENVVGHLGFFDLHTVE 60
Query: 457 CRGEGRSSGGGLALLWKEDFNIDIISYSLHHITASHTNADQITCFLTGFYGYPESQNKIK 516
G+ GGLAL+WK+ I ++ I A D+ +LT YG P + +
Sbjct: 61 PIGKS----GGLALMWKDSVQIKVLQSDKRLIDALLIWQDK-EFYLTCIYGEPVQAERGE 115
Query: 517 SWDLLVRLKGETSGPWMCFGDFNEITSNAEKKGGIDRPIEHMKKFVRCLNQCGLEDMGFQ 576
W+ L RL SGPWM GDFNE+ +EK GG R +F + LN CGL ++
Sbjct: 116 LWERLTRLGLSRSGPWMLTGDFNELVDPSEKIGGPARKESSCLEFRQMLNSCGLWEVNHS 175
Query: 577 GDPFTWCNGRKDEAHIQERLDRGVISQSFKEIWPASSVQHLLRYNSDHAPLLITVTSQPI 636
G F+W R DE +Q RLDR V +Q++ E++P + +L + SDH+PL+ +
Sbjct: 176 GYQFSWYGNRNDEL-VQCRLDRTVANQAWMELFPQAKATYLQKICSDHSPLINNLVGD-- 232
Query: 637 EEGKKKKKKLFRFEQHLTLNHELAFHLRQAW--QSGGDNA--EQKLAQAKETIMALE-TE 691
+K F++++ L W QS NA +K+A + I +
Sbjct: 233 ---NWRKWAGFKYDKRWVQREGFKDLLCNFWSQQSTKTNALMMEKIASCRREISKWKRVS 289
Query: 692 FGSIRKKLHDLEQRLKAAQKWNPTEENIMRRKEMENEFAELMGREELYWRQRSRATWLKE 751
S ++ +L+ +L AA K P + + R ++ E ++ EE +W+++SR W++
Sbjct: 290 KPSSAVRIQELQFKLDAATKQIPFDRRELAR--LKKELSQEYNNEEQFWQEKSRIMWMRN 347
Query: 752 GDKNTSFFHGKANQRQKQNRIARIRDDHGNWVYKQDQVTTAFSNYFEGIFKSSQPNNIEE 811
GD+NT +FH R+ QNRI ++ D+ G + + YF+ +F S E
Sbjct: 348 GDRNTKYFHAATKNRRAQNRIQKLIDEEGREWTSDEDLGRVAEAYFKKLFASEDVGYTVE 407
Query: 812 VCQKIQNKLNQEMREHLEEEFTADEVAYALNQMHPLKAPGPDGFPALFYQKYWKLVGGDV 871
+ + ++ +M +L T +EV A ++P K PGPDG YQ++W+ +G +
Sbjct: 408 ELENLTPLVSDQMNNNLLAPITKEEVQRATFSINPHKCPGPDGMNGFLYQQFWETMGDQI 467
Query: 872 TSQVLEILNKGVDPASLNQTFICLIPKVKAPENPMEFRPISLCNVIMKLVTKCIANRIKD 931
T V G +N+T ICLIPK+ E +FRPISLCNVI K++ K +ANR+K
Sbjct: 468 TEMVQAFFRSGSIEEGMNKTNICLIPKILKAEKMTDFRPISLCNVIYKVIGKLMANRLKK 527
Query: 932 VLGEVVGEQQSAFIPGRLITDNALTGFEVFHYMKKKRKGKKGYMALKLDMSKAYDRIEWD 991
+L ++ E Q+AF+ GRLI+DN L E+ H + K + ++A+K D+SKAYDR+EW
Sbjct: 528 ILPSLISETQAAFVKGRLISDNILIAHELLHALSSNNKCSEEFIAIKTDISKAYDRVEWP 587
Query: 992 FLKQVLTTMGFPSKITELISICVSSVSYSLLVNGEPSPPFSPQRGLRQGDPLSPYLFILC 1051
FL++ + +GF LI CV SV Y +L+NG P P RGLRQGDPLSPYLF++C
Sbjct: 588 FLEKAMRGLGFADHWIRLIMECVKSVRYQVLINGTPHGEIIPSRGLRQGDPLSPYLFVIC 647
Query: 1052 VEAFSGLISNQIRLRNLHGIKVARGAPPINHLFFADDSLIFSRATQEEASSLLDVIRQYE 1111
E ++ + + + G+KVARGAPPI+HL FADDS+ + + E ++ +I +Y
Sbjct: 648 TEMLVKMLQSAEQKNQITGLKVARGAPPISHLLFADDSMFYCKVNDEALGQIIRIIEEYS 707
Query: 1112 QASGQLVNMDKSEISFSRNVPQTSMDTIRNRMGVKAVIVHDKYLGLPTVIGHSKKAIFGK 1171
ASGQ VN KS I F +++ + ++ ++G++ YLGLP SK A
Sbjct: 708 LASGQRVNYLKSSIYFGKHISEERRCLVKRKLGIEREGGEGVYLGLPESFQGSKVATLSY 767
Query: 1172 IQERVWRKLKGWKEKTLSKAGKEILIKAVAQAIPSYVMSCFKLPNGICSKIESLLANFWW 1231
+++R+ +K+ GW+ LS GKEIL+KAVA A+P+Y MSCFK+P IC +IES++A FWW
Sbjct: 768 LKDRLGKKVLGWQSNFLSPGGKEILLKAVAMALPTYTMSCFKIPKTICQQIESVMAEFWW 827
Query: 1232 GQKENERKIHWAAWQHLCKTKNRGDLGFRNLEDFNRALLAKQAWRLLNSEKSLLYKVWKA 1291
K+ R +HW AW HL + K G LGF+ +E FN ALL KQ WR++ + SL+ KV+K+
Sbjct: 828 KNKKEGRGLHWKAWCHLSRPKAVGGLGFKEIEAFNIALLGKQLWRMITEKDSLMAKVFKS 887
Query: 1292 KYFPKCDLLKAGVGYQPSYAWRSVWGTLKFIEEGCKWSIGNGKKVSIWKDPWLPGPDS-- 1349
+YF K D L A +G +PS+AW+S++ I++G + IGNG+ +++W DPW+ +
Sbjct: 888 RYFSKSDPLNAPLGSRPSFAWKSIYEAQVLIKQGIRAVIGNGETINVWTDPWIGAKPAKA 947
Query: 1350 --GYVRTQDVPEFAHEK---VSDLRLWEGGSWNISKIDQLFNPAEAQLIKSIRLSWRDSE 1404
R+ V ++A V DL L +G WN + + LF + I ++R +++
Sbjct: 948 AQAVKRSHLVSQYAANSIHVVKDLLLPDGRDWNWNLVSLLFPDNTQENILALRPGGKETR 1007
Query: 1405 DKLIWRWSRDGMFSVKSAYYQI-----QSQKIAATASGSNSPSFSWKTLWRVKIQNKVKH 1459
D+ W +SR G +SVKS Y+ + Q S P F + +W++ + K+ H
Sbjct: 1008 DRFTWEYSRSGHYSVKSGYWVMTEIINQRNNPQEVLQPSLDPIF--QQIWKLDVPPKIHH 1065
Query: 1460 FMYRVINNLTPCRANLARRGIQIQEQCALCSQDVVETQDHLFLQCSWARAAWFHHSLGLR 1519
F++R +NN +NLA R + ++ C C ET +HL +C +AR W
Sbjct: 1066 FLWRCVNNCLSVASNLAYRHLAREKSCVRCPSH-GETVNHLLFKCPFARLTW------AI 1118
Query: 1520 MDLVQTSFLEWLQSFCAN------------QEDEIVAQVFHGTWAIWKARNESLFNNVQV 1567
L EW +S N +E + A + W +WK RN+ +F +
Sbjct: 1119 SPLPAPPGGEWAESLFRNMHHVLSVHKSQPEESDHHALIPWILWRLWKNRNDLVFKGREF 1178
Query: 1568 HPATAMEKAQNLLAEWKEAQEHHAPCVQEKRPQ--QWSAPSQGRIKINVDAGWSGP-HST 1624
+ KA + W +E R + +W PS G +K N D WS +
Sbjct: 1179 TAPQVILKATEDMDAWNNRKEPQPQVTSSTRDRCVKWQPPSHGWVKCNTDGAWSKDLGNC 1238
Query: 1625 GLGFVARDHRGIIMLAGTCLEAQRLDPLIAEAMALRWSLHTALEVSLDSVIFKLDSISVV 1684
G+G+V R+H G ++ G + L E ALRW++ + + VIF+ DS +V
Sbjct: 1239 GVGWVLRNHTGRLLWLGLRALPSQQSVLETEVEALRWAVLSLSRFNYRRVIFESDSQYLV 1298
Query: 1685 KAMRTNSSLWTIQNLM*DCIYLASLFTSISFNHVSRNANVPAHTLASLACS---YNTKLW 1741
++ + ++ + D L F + F R N A A + S Y+ K++
Sbjct: 1299 SLIQNEMDIPSLAPRIQDIRNLLRHFEEVKFQFTRREGNNVADRTARESLSLMNYDPKMY 1358
Query: 1742 WDVP 1745
P
Sbjct: 1359 SITP 1362
>gb|AAD21778.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
thaliana] gi|25410938|pir||G84429 hypothetical protein
At2g01840 [imported] - Arabidopsis thaliana
Length = 1715
Score = 768 bits (1984), Expect = 0.0
Identities = 458/1408 (32%), Positives = 728/1408 (51%), Gaps = 90/1408 (6%)
Query: 386 GGAGRPALPGAMKTISWNCRGVGSPRTVKVLQRIIKAEDPDIVFLMETHKKNGELKNIVA 445
GGAG P M+ WNC+G+G P TV+ L+ + + D++FL+ET +++ +++
Sbjct: 354 GGAGTTTSP--MRVGFWNCQGLGQPLTVRRLEEVQRVYFLDMLFLIETKQQDNYTRDLGV 411
Query: 446 RLGFKNHLGVECRGEGRSSGGGLALLWKEDFNIDIISYSLHHITASHTNADQITCFLTGF 505
++GF++ + RG GGL + WK+ +I +IS+ + + + +L+
Sbjct: 412 KMGFEDMCIISPRG----LSGGLVVYWKKHLSIQVISHDVRLVDL-YVEYKNFNFYLSCI 466
Query: 506 YGYPESQNKIKSWDLLVRLKGETSGPWMCFGDFNEITSNAEKKGGIDRPIEHMKKFVRCL 565
YG+P + W+ L R+ SGPWM GDFNEI + EKKGG R I ++ F +
Sbjct: 467 YGHPIPSERHHLWEKLQRVSAHRSGPWMMCGDFNEILNLNEKKGGRRRSIGSLQNFTNMI 526
Query: 566 NQCGLEDMGFQGDPFTWCNGRKDEAHIQERLDRGVISQSFKEIWPASSVQHLLRYNSDHA 625
N C ++D+ +G+P++W R++E I+ LDR I+ ++ +PA + L SDHA
Sbjct: 527 NCCNMKDLKSKGNPYSWVGKRQNET-IESCLDRVFINSDWQASFPAFETEFLPIAGSDHA 585
Query: 626 PLLITVTSQPIEEGKKKKKKLFRFEQHLTLNHELAFHLRQAWQSGGDNAE---------- 675
P++I + + K+ FR+++ + +++ W G ++
Sbjct: 586 PVIIDIAEEVCT-----KRGQFRYDRRHFQFEDFVDSVQRGWNRGRSDSHGGYYEKLHCC 640
Query: 676 -QKLAQAKETIMALETEFGSIRKKLHDLEQRLKAAQKWN--PTEENIMRRKEMENEFAEL 732
Q+LA+ K E K+ L+ R+ AA++ + P + + R+++ + +
Sbjct: 641 RQELAKWKRRTKTNTAE------KIETLKYRVDAAERDHTLPHQTILRLRQDLNQAYRD- 693
Query: 733 MGREELYWRQRSRATWLKEGDKNTSFFHGKANQRQKQNRIARIRDDHGNWVYKQDQVTTA 792
EELYW +SR W+ GD+NT FF+ R+ +NRI I D G ++ D +
Sbjct: 694 ---EELYWHLKSRNRWMLLGDRNTMFFYASTKLRKSRNRIKAITDAQGIENFRDDTIGKV 750
Query: 793 FSNYFEGIFKSSQPNNIEEVCQKIQNKLNQEMREHLEEEFTADEVAYALNQMHPLKAPGP 852
NYF +F ++Q ++ EE+ I K+ ++M L + T EV A+ + +APG
Sbjct: 751 AENYFADLFTTTQTSDWEEIISGIAPKVTEQMNHELLQSVTDQEVRDAVFAIGADRAPGF 810
Query: 853 DGFPALFYQKYWKLVGGDVTSQVLEILNKGVDPASLNQTFICLIPKVKAPENPMEFRPIS 912
DGF A FY W L+G DV V V +NQT ICLIPK+ P++ ++RPIS
Sbjct: 811 DGFTAAFYHHLWDLIGNDVCLMVRHFFESDVMDNQINQTQICLIPKIIDPKHMSDYRPIS 870
Query: 913 LCNVIMKLVTKCIANRIKDVLGEVVGEQQSAFIPGRLITDNALTGFEVFHYMKKKRKGKK 972
LC K+++K + R+K LG+V+ + Q+AF+PG+ I+DN L E+ H +K +R+ +
Sbjct: 871 LCTASYKIISKILIKRLKQCLGDVISDSQAAFVPGQNISDNVLVAHELLHSLKSRRECQS 930
Query: 973 GYMALKLDMSKAYDRIEWDFLKQVLTTMGFPSKITELISICVSSVSYSLLVNGEPSPPFS 1032
GY+A+K D+SKAYDR+EW+FL++V+ +GF + + I CV+SVSY +L+NG P
Sbjct: 931 GYVAVKTDISKAYDRVEWNFLEKVMIQLGFAPRWVKWIMTCVTSVSYEVLINGSPYGKIF 990
Query: 1033 PQRGLRQGDPLSPYLFILCVEAFSGLISNQIRLRNLHGIKVARGAPPINHLFFADDSLIF 1092
P RG+RQGDPLSPYLF+ C E S ++ + +HG+K+ + I+HL FADDSL F
Sbjct: 991 PSRGIRQGDPLSPYLFLFCAEVLSNMLRKAEVNKQIHGMKITKDCLAISHLLFADDSLFF 1050
Query: 1093 SRATQEEASSLLDVIRQYEQASGQLVNMDKSEISFSRNVPQTSMDTIRNRMGVKAVIVHD 1152
RA+ + L + ++YE+ASGQ +N KS I F + +P + +G+ V
Sbjct: 1051 CRASNQNIEQLALIFKKYEEASGQKINYAKSSIIFGQKIPTMRRQRLHRLLGIDNVRGGG 1110
Query: 1153 KYLGLPTVIGHSKKAIFGKIQERVWRKLKGWKEKTLSKAGKEILIKAVAQAIPSYVMSCF 1212
KYLGLP +G K +F I +V + +GW LS AGKEI+IKA+A A+P Y M+CF
Sbjct: 1111 KYLGLPEQLGRRKVELFEYIVTKVKERTEGWAYNYLSPAGKEIVIKAIAMALPVYSMNCF 1170
Query: 1213 KLPNGICSKIESLLANFWWGQKENERKIHWAAWQHLCKTKNRGDLGFRNLEDFNRALLAK 1272
LP IC++I SL+ FWWG KENE GDLGF++L FNRALLAK
Sbjct: 1171 LLPTLICNEINSLITAFWWG-KENE-----------------GDLGFKDLHQFNRALLAK 1212
Query: 1273 QAWRLLNSEKSLLYKVWKAKYFPKCDLLKAGVGYQPSYAWRSVWGTLKFIEEGCKWSIGN 1332
QAWR+L + +SLL +++K Y+P L+A G SY W S+ +++G + +G+
Sbjct: 1213 QAWRILTNPQSLLARLYKGLYYPNTTYLRANKGGHASYGWNSIQEGKLLLQQGLRVRLGD 1272
Query: 1333 GKKVSIWKDPWL----PGPDSGYVRTQDVPEFAHEKVSDLRLWEGGSWNISKIDQLFNPA 1388
G+ IW+DPWL P P G + +D+ KV+DL W+ + + NP
Sbjct: 1273 GQTTKIWEDPWLPTLPPRPARGPILDEDM------KVADLWRENKREWDPVIFEGVLNPE 1326
Query: 1389 EAQLIKSIRLSWRDSEDKLIWRWSRDGMFSVKSAYY-----QIQSQKIAATASGSNSPSF 1443
+ QL KS+ LS + D W ++R+ ++V+S Y+ + ++I G
Sbjct: 1327 DQQLAKSLYLSNYAARDSYKWAYTRNTQYTVRSGYWVATHVNLTEEEIINPLEGDVPLK- 1385
Query: 1444 SWKTLWRVKIQNKVKHFMYRVINNLTPCRANLARRGIQIQEQCALCSQDVVETQDHLFLQ 1503
+ +WR+KI K+KHF++R ++ L R I C C + ET +H+
Sbjct: 1386 --QEIWRLKITPKIKHFIWRCLSGALSTTTQLRNRNIPADPTCQRCC-NADETINHIIFT 1442
Query: 1504 CSWARAAWFHHSLGLRMDLVQTSFLE----WLQSFCANQEDEIV--AQVFHGTWAIWKAR 1557
CS+A+ W + L T LE + NQ I+ F W +WK+R
Sbjct: 1443 CSYAQVVWRSANFSGSNRLCFTDNLEENIRLILQGKKNQNLPILNGLMPFWIMWRLWKSR 1502
Query: 1558 NESLFNNVQVHPATAMEKAQNLLAEWKEAQEH-----HAPCVQEKRP----QQWSAPSQG 1608
NE LF + P +KA+ EW E + H RP +QWS+P +G
Sbjct: 1503 NEYLFQQLDRFPWKVAQKAEQEATEWVETMVNDTAISHNTAQSNDRPLSRSKQWSSPPEG 1562
Query: 1609 RIKINVDAGW-SGPHSTGLGFVARDHRGIIMLAGTCLEAQRLDPLIAEAMALRWSLHTAL 1667
+K N D+G+ G T G++ RD G ++ +G Q L AEA+ +L
Sbjct: 1563 FLKCNFDSGYVQGRDYTSTGWILRDCNGRVLHSGCAKLQQSYSALQAEALGFLHALQMVW 1622
Query: 1668 EVSLDSVIFKLDSISVVKAMRTNSSLWTIQNLM*DCIYLASLFTSISFNHVSRNANVPAH 1727
V F+ D++ + + ++ L+ D + + S +V+R N+ A
Sbjct: 1623 IRGYCYVWFEGDNLELTNLINKTEDHHLLETLLYDIRFWMTKLPFSSIGYVNRERNLAAD 1682
Query: 1728 TLASLACSYNTKL-WWDVPPPEIEQALF 1754
L A S ++ + VPP ++ L+
Sbjct: 1683 KLTKYANSMSSLYETFHVPPRWLQLYLY 1710
>gb|AAV32224.1| hypothetical protein [Oryza sativa (japonica cultivar-group)]
gi|45267888|gb|AAS55787.1| hypothetical protein [Oryza
sativa (japonica cultivar-group)]
Length = 1936
Score = 764 bits (1974), Expect = 0.0
Identities = 457/1368 (33%), Positives = 712/1368 (51%), Gaps = 88/1368 (6%)
Query: 388 AGRPALPGAMKTISWNCRGVGSPRTVKVLQRIIKAEDPDIVFLMETHKKNGELKNIVARL 447
A P GAM ++WNCRG+G+ TV+ L+ +I+ +VFL ET + ++ + +L
Sbjct: 627 ATSPGAAGAMSCLAWNCRGLGNTATVQDLRALIQKAGSQLVFLCETRQSVEKMSRLRRKL 686
Query: 448 GFKNHLGVECRGEGRSSGGGLALLWKEDFNIDIISYSLHHITAS-HTNADQITCFLTGFY 506
F+ +GV G+ GGLAL W E ++D+ + +I A + D+ +T Y
Sbjct: 687 AFRGFVGVSSEGKS----GGLALYWDESVSVDVKDINKRYIDAYVRLSPDEPQWHITFVY 742
Query: 507 GYPESQNKIKSWDLLVRLKGETSGPWMCFGDFNEITSNAEKKGGIDRPIEHMKKFVRCLN 566
G P +N+ + W LL ++ ++ PWM GDFNE E R M+ F L
Sbjct: 743 GEPRVENRHRMWSLLRTIRQSSALPWMVIGDFNETLWQFEHFSKNPRCETQMQNFRDALY 802
Query: 567 QCGLEDMGFQGDPFTWCNGRKDEAHIQERLDRGVISQSFKEIWPASSVQHLLRYNSDHAP 626
C L+D+GF+G P T+ N R +++ RLDR V +++++P + V HL+ SDH+P
Sbjct: 803 DCDLQDLGFKGVPHTYDNRRDGWRNVKVRLDRAVADDKWRDLFPEAQVSHLVSPCSDHSP 862
Query: 627 LLITVTSQPIEEGKKKKKKLFRFEQHLTLNHELAFHLRQAWQSGG---DNAEQKLAQAKE 683
+L+ +++ + ++K +E E + +AW + G D + +A +
Sbjct: 863 ILLEFI---VKDTTRPRQKCLHYEIVWEREPESVQVIEEAWINAGVKTDLGDINIALGR- 918
Query: 684 TIMAL----ETEFGSIRKKLHDLEQRLKAAQKWNPTEENIMRRKEMENEFAELMGREELY 739
+ AL +T+ ++ K+L ++L+ N +I + + NE ++ REE+
Sbjct: 919 VMSALRSWSKTKVKNVGKELEKARKKLEDLIASNAARSSIRQATDHMNE---MLYREEML 975
Query: 740 WRQRSRATWLKEGDKNTSFFHGKANQRQKQNRIARIRDDHGNWVYKQDQVTTAFSNYFEG 799
W QRSR WLKEGD+NT FFH +A R K+N+I+++RD++G + T + YF+G
Sbjct: 976 WLQRSRVNWLKEGDRNTRFFHSRAVWRAKKNKISKLRDENGAIHSTTSVLETMATEYFQG 1035
Query: 800 IFKSSQPNNIEEVCQKIQNKLNQEMREHLEEEFTADEVAYALNQMHPLKAPGPDGFPALF 859
++K+ N E V + Q K+ M E L +EF +E+A A+ Q+ PLK+P PDGFPA F
Sbjct: 1036 VYKADPSLNPESVTRLFQEKVTDAMNEKLCQEFKEEEIAQAIFQIGPLKSPRPDGFPARF 1095
Query: 860 YQKYWKLVGGDVTSQVLEILNKGVDPASLNQTFICLIPKVKAPENPMEFRPISLCNVIMK 919
YQ+ W + D+ V G+ P +N T I LIPK P + ++RPISLCNV+ K
Sbjct: 1096 YQRNWGTLKSDIILAVRNFFQSGLMPKGVNDTAIVLIPKKDQPIDLKDYRPISLCNVVYK 1155
Query: 920 LVTKCIANRIKDVLGEVVGEQQSAFIPGRLITDNALTGFEVFHYMKKKRKGKKGYMALKL 979
+V+KC+ NR++ +L ++V ++QSAFI GR+ITDNAL FE FH ++K +K A KL
Sbjct: 1156 VVSKCLVNRLRPILDDLVSKEQSAFIQGRMITDNALLAFECFHSIQKNKKANSAACAYKL 1215
Query: 980 DMSKAYDRIEWDFLKQVLTTMGFPSKITELISICVSSVSYSLLVNGEPSPPFSPQRGLRQ 1039
D+SKAYDR++W FL+ L +GF + I +CV++V YS+ NG F+P RGLRQ
Sbjct: 1216 DLSKAYDRVDWRFLELALNKLGFAHRWVSWIMLCVTTVRYSVKFNGTLLRSFAPTRGLRQ 1275
Query: 1040 GDPLSPYLFILCVEAFSGLISNQIRLRNLHGIKVARGAPPINHLFFADDSLIFSRATQEE 1099
G+PLSP+LF+ + S L+ ++ +L +K+ R AP I++L FADD+L+F +A ++E
Sbjct: 1276 GEPLSPFLFLFVADGLSLLLKEKVAQNSLTPLKICRQAPGISYLLFADDTLLFFKAEKKE 1335
Query: 1100 ASSLLDVIRQYEQASGQLVNMDKSEISFSRNVPQTSMDTIRNRMGVKAVIVHDKYLGLPT 1159
A + +V+ Y Q +GQL+N K I F P + + IRN + V+ D+YLG PT
Sbjct: 1336 AEVVKEVLTNYAQGTGQLINPAKCSILFGEASPSSVSEDIRNTLQVERDNFEDRYLGFPT 1395
Query: 1160 VIGHSKKAIFGKIQERVWRKLKGWKEKTLSKAGKEILIKAVAQAIPSYVMSCFKLPNGIC 1219
G K F +Q ++ +++ W E LS GKEILIKAV QAIP YVM FK P+ +
Sbjct: 1396 PEGRMHKGRFQSLQAKIAKRVIQWGENFLSSGGKEILIKAVIQAIPVYVMGLFKFPDSVY 1455
Query: 1220 SKIESLLANFWWGQKENERKIHWAAWQHLCKTKNRGDLGFRNLEDFNRALLAKQAWRLLN 1279
++ + NFWWG R+ HW AW L K K G LGFR+ + FN+ALL +QAWRL+
Sbjct: 1456 DELTKMTRNFWWGADNGRRRTHWRAWDSLTKAKINGGLGFRDYKLFNQALLTRQAWRLIE 1515
Query: 1280 SEKSLLYKVWKAKYFPKCDLLKAGVGYQPSYAWRSVWGTLKFIEEGCKWSIGNGKKVSIW 1339
SL +V KAKYFP L S W + L +++G W IGNG V IW
Sbjct: 1516 FPNSLCAQVLKAKYFPHGSLTDTTFSANASPTWHGIEYGLDLLKKGIIWRIGNGNSVRIW 1575
Query: 1340 KDPWLPGPDSGYVRTQDVPEFAHEKVSDLRLWEGGSWNISKIDQLFNPAEAQLIKSIRLS 1399
+DPW+P D + VSDL + E G+W+ +KI+Q F +A +I+ I +S
Sbjct: 1576 RDPWIPR-DLSRRPVSSKANCRLKWVSDL-IAEDGTWDSAKINQYFLKIDADIIQKICIS 1633
Query: 1400 WRDSEDKLIWRWSRDGMFSVKSAY---YQIQSQKIAATASGSNSPSFSWKTLWRVKIQNK 1456
R ED + W + G FSV+SAY Q+ +++S S SW+ +W+ + K
Sbjct: 1634 ARLEEDFIAWHPDKTGRFSVRSAYKLALQLADMNNCSSSSSSRLNK-SWELIWKCNVPQK 1692
Query: 1457 VKHFMYRVINNLTPCRANLARRGIQIQEQCALCSQDVVETQDHLFLQCSWARAAWFHHSL 1516
V+ F +RV +N N +R ++ + C +C ++ E H +C H+
Sbjct: 1693 VRIFAWRVASNSLATMENKKKRNLERFDVCGICDREK-EDAGHALCRCV--------HAN 1743
Query: 1517 GLRMDLVQTSFLEWLQSFCANQEDEIVAQVFHGTWAIWKARNESLFNNVQVHPATAMEKA 1576
L ++L + + +V+ F T AI
Sbjct: 1744 SLWVNLEKGKY--------------VVSVNFPKTTAI----------------------- 1766
Query: 1577 QNLLAEWKEAQEHHAPCVQEKRPQQWSAPSQGRIKINVDAGWS-GPHSTGLGFVARDHRG 1635
H P + +R W P G +K+NVD + G+G + R+ G
Sbjct: 1767 ------------KHTPGAENRR---WERPRNGWMKLNVDGSFDINSEKGGIGMILRNCLG 1811
Query: 1636 IIMLAGTCLEAQRLDPLIAEAMALRWSLHTALEVSLDSVIFKLDSISVVKAM-RTNSSLW 1694
++ + PL AE A LH AL +L + + D SV++ + +
Sbjct: 1812 NVIFSSCRSLDSCSGPLEAELHACVEGLHLALHWTLLPIQVETDCSSVIQLLNHPDKDRS 1871
Query: 1695 TIQNLM*DCIYLASLFTSISFNHVSRNANVPAHTLASLACSYNTKLWW 1742
+ N+ + L + I+ + V R+ NV +H LA+ A + + +W
Sbjct: 1872 VLANIAQEAKSLMAGDRQIAISKVQRSQNVISHFLANKARAESLSSFW 1919
>pir||T00833 RNA-directed DNA polymerase homolog T13L16.7 - Arabidopsis thaliana
(fragment)
Length = 1365
Score = 753 bits (1945), Expect = 0.0
Identities = 436/1310 (33%), Positives = 702/1310 (53%), Gaps = 45/1310 (3%)
Query: 400 ISWNCRGVGSPRTVKVLQRIIKAEDPDIVFLMETHKKNGELKNIVARLGFKNHLGVECRG 459
ISWNC+G+ +P T++ L+ + K PDI+FLMET + + LG+ VE
Sbjct: 3 ISWNCQGLRNPWTIRYLKEMKKDHFPDILFLMETKNSQDFVYKVFCWLGYDFIHTVE--P 60
Query: 460 EGRSSGGGLALLWKEDFNIDIISYSLHHITASHTNADQITCFLTGFYGYPESQNKIKSWD 519
EGRS GGLA+ WK I+ + Y+ ++ ++ F++ YG P + + K W+
Sbjct: 61 EGRS--GGLAIFWKSHLEIEFL-YADKNLMDLQVSSRNKVWFISCVYGLPVTHMRPKLWE 117
Query: 520 LLVRLKGETSGPWMCFGDFNEITSNAEKKGGIDRPIEHMKKFVRCLNQCGLEDMGFQGDP 579
L + + + W GDFN+I SN EK GG R + F L C + ++G G+
Sbjct: 118 HLNSIGLKRAEAWCLIGDFNDIRSNDEKLGGPRRSPSSFQCFEHMLLNCSMHELGSTGNS 177
Query: 580 FTWCNGRKDEAHIQERLDRGVISQSFKEIWPASSVQHLLRYNSDHAPLLITVTSQPIEEG 639
FTW R D+ +Q +LDR + ++ I+P + L ++ SDH P+L+ T+
Sbjct: 178 FTWGGNRNDQ-WVQCKLDRCFGNPAWFSIFPNAHQWFLEKFGSDHRPVLVKFTND----- 231
Query: 640 KKKKKKLFRFEQHLTLNHELAFHLRQAWQS----GGDNAEQKLAQAKETIMALETEFGSI 695
+ + FR+++ L + + ++W S G ++ L + + I S+
Sbjct: 232 NELFRGQFRYDKRLDDDPYCIEVIHRSWNSAMSQGTHSSFFSLIECRRAI--------SV 283
Query: 696 RKKLHDL--EQRLKAAQKWNPTEENIM-----RRKEMENEFAELMGREELYWRQRSRATW 748
K D + R+K +K E++I R + ++++ + G EEL+WRQ+SR W
Sbjct: 284 WKHSSDTNAQSRIKRLRKDLDAEKSIQIPCWPRIEYIKDQLSLAYGDEELFWRQKSRQKW 343
Query: 749 LKEGDKNTSFFHGKANQRQKQNRIARIRDDHGNWVYKQDQVTTAFSNYFEGIFKSSQPNN 808
L GDKNT FFH + + +N ++ + D++ + S++FE +F S+
Sbjct: 344 LAGGDKNTGFFHATVHSERLKNELSFLLDENDQEFTRNSDKGKIASSFFENLFTSTYILT 403
Query: 809 IEEVCQKIQNKLNQEMREHLEEEFTADEVAYALNQMHPLKAPGPDGFPALFYQKYWKLVG 868
+ +Q K+ EM +L +E T EV A+ ++ APGPDGF ALF+Q++W LV
Sbjct: 404 HNNHLEGLQAKVTSEMNHNLIQEVTELEVYNAVFSINKESAPGPDGFTALFFQQHWDLVK 463
Query: 869 GDVTSQVLEILNKGVDPASLNQTFICLIPKVKAPENPMEFRPISLCNVIMKLVTKCIANR 928
+ +++ GV P N T ICLIPK+ +P+ + RPISLC+V+ K+++K + R
Sbjct: 464 HQILTEIFGFFETGVLPQDWNHTHICLIPKITSPQRMSDLRPISLCSVLYKIISKILTQR 523
Query: 929 IKDVLGEVVGEQQSAFIPGRLITDNALTGFEVFHYMKKKRKGKKGYMALKLDMSKAYDRI 988
+K L +V QSAF+P RLI+DN L E+ H ++ + K +MA K DMSKAYDR+
Sbjct: 524 LKKHLPAIVSTTQSAFVPQRLISDNILVAHEMIHSLRTNDRISKEHMAFKTDMSKAYDRV 583
Query: 989 EWDFLKQVLTTMGFPSKITELISICVSSVSYSLLVNGEPSPPFSPQRGLRQGDPLSPYLF 1048
EW FL+ ++T +GF +K I CV+SVSYS+L+NG+P P RG+RQGDPLSP LF
Sbjct: 584 EWPFLETMMTALGFNNKWISWIMNCVTSVSYSVLINGQPYGHIIPTRGIRQGDPLSPALF 643
Query: 1049 ILCVEAFSGLISNQIRLRNLHGIKVARGAPPINHLFFADDSLIFSRATQEEASSLLDVIR 1108
+LC EA +++ + + GI+ +NHL FADD+L+ +AT++E L+ +
Sbjct: 644 VLCTEALIHILNKAEQAGKITGIQFQDKKVSVNHLLFADDTLLMCKATKQECEELMQCLS 703
Query: 1109 QYEQASGQLVNMDKSEISFSRNVPQTSMDTIRNRMGVKAVIVHDKYLGLPTVIGHSKKAI 1168
QY Q SGQ++N++KS I+F +NV D I++R G+ KYLGLP + SK+ +
Sbjct: 704 QYGQLSGQMINLNKSAITFGKNVDIQIKDWIKSRSGISLEGGTGKYLGLPECLSGSKRDL 763
Query: 1169 FGKIQERVWRKLKGWKEKTLSKAGKEILIKAVAQAIPSYVMSCFKLPNGICSKIESLLAN 1228
FG I+E++ +L GW KTLS+ GKE+L+K++A A+P YVMSCFKLP +C K+ +++ +
Sbjct: 764 FGFIKEKLQSRLTGWYAKTLSQGGKEVLLKSIALALPVYVMSCFKLPKNLCQKLTTVMMD 823
Query: 1229 FWWGQKENERKIHWAAWQHLCKTKNRGDLGFRNLEDFNRALLAKQAWRLLNSEKSLLYKV 1288
FWW + +RKIHW +WQ L K++G GF++L+ FN+ALLAKQAWR+L + SL +V
Sbjct: 824 FWWNSMQQKRKIHWLSWQRLTLPKDQGGFGFKDLQCFNQALLAKQAWRVLQEKGSLFSRV 883
Query: 1289 WKAKYFPKCDLLKAGVGYQPSYAWRSVWGTLKFIEEGCKWSIGNGKKVSIWKDPWLPGPD 1348
++++YF D L A G +PSYAWRS+ + + +G + IGNG+K +W D WL D
Sbjct: 884 FQSRYFSNSDFLSATRGSRPSYAWRSILFGRELLMQGLRTVIGNGQKTFVWTDKWL--HD 941
Query: 1349 SGYVRTQDVPEFAHE--KVSDLRLWEGGSWNISKIDQLFNPAEAQLIKSIRLSWRDSEDK 1406
R + F + KVS L +WN++ + LF + ++I R + ED
Sbjct: 942 GSNRRPLNRRRFINVDLKVSQLIDPTSRNWNLNMLRDLFPWKDVEIILKQRPLF-FKEDS 1000
Query: 1407 LIWRWSRDGMFSVKSAYYQIQSQ---KIAATASGSNSPSFSWKTLWRVKIQNKVKHFMYR 1463
W S +G++SVK+ Y + Q ++ A S + + +W + K++ F+++
Sbjct: 1001 FCWLHSHNGLYSVKTGYEFLSKQVHHRLYQEAKVKPSVNSLFDKIWNLHTAPKIRIFLWK 1060
Query: 1464 VINNLTPCRANLARRGIQIQEQCALCSQDVVETQDHLFLQCSWARAAW-FHHSLGLRMDL 1522
++ P L RGI+ + C +C + ET +H+ +C AR W H +
Sbjct: 1061 ALHGAIPVEDRLRTRGIRSDDGCLMCDTE-NETINHILFECPLARQVWAITHLSSAGSEF 1119
Query: 1523 VQTSFLEWLQSFCANQEDEIVAQVFHGT----WAIWKARNESLFNNVQVHPATAMEKAQN 1578
+ + + Q++++ + + W +WK RN LF T ++KA
Sbjct: 1120 SNSVYTNMSRLIDLTQQNDLPHHLRFVSPWILWFLWKNRNALLFEGKGSITTTLVDKAYE 1179
Query: 1579 LLAEWKEAQEHHAPCVQEKRPQQWSAPSQGRIKINVDAGWSGPHS-TGLGFVARDHRGII 1637
EW AQ H + + +W P G +K N+ WS H +G +V RD +G +
Sbjct: 1180 AYHEWFSAQTHMQNDEKHLKITKWCPPLPGELKCNIGFAWSKQHHFSGASWVVRDSQGKV 1239
Query: 1638 MLAGTCLEAQRLDPLIAEAMALRWSLHTALEVSLDSVIFKLDSISVVKAM 1687
+L + P A+ + W+L + D VIF + +++A+
Sbjct: 1240 LLHSRRSFNEVHSPYSAKIRSWEWALESMTHHHFDRVIFASSTHEIIQAL 1289
>gb|AAD20714.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
thaliana] gi|25412331|pir||G84649 hypothetical protein
At2g25550 [imported] - Arabidopsis thaliana
Length = 1750
Score = 751 bits (1940), Expect = 0.0
Identities = 469/1386 (33%), Positives = 710/1386 (50%), Gaps = 70/1386 (5%)
Query: 384 RIGGAGRPALPGAMKTISWNCRGVGSPRTVKVLQRIIKAEDPDIVFLMETHKKNGELKNI 443
R GGAG P G+G P T L R+ + + DI+FL+ET + ++ +
Sbjct: 383 RDGGAGGP--------------GIGMPLTQSRLFRLFRMYNYDILFLVETLNQCDKVCKL 428
Query: 444 VARLGFKNHLGVECRGEGRSSGGGLALLWKEDFNIDIISYSLHHITASHTNADQITCFLT 503
LGF N + G GGLAL+WK + ++ +IS + SH + + +L+
Sbjct: 429 AYDLGFPNVITQPPNGRS----GGLALMWKNNVSLSLISQD-ERLIDSHVTFNNKSFYLS 483
Query: 504 GFYGYPESQNKIKSWDLLVRLKGETSGPWMCFGDFNEITSNAEKKGGIDRPIEHMKKFVR 563
YG+P + + W L + + W+ GDFNEI SNAEK GG R + F
Sbjct: 484 CVYGHPTQSERHQLWQTLEHISDNRNAEWLLVGDFNEILSNAEKIGGPMREEWTFRNFRN 543
Query: 564 CLNQCGLEDMGFQGDPFTWCNGRKDEAHIQERLDRGVISQSFKEIWPASSVQHLLRYNSD 623
++ C +EDM +GD F+W G + ++ LDR I+ ++ +P + ++ L SD
Sbjct: 544 MVSHCDIEDMRSKGDRFSWV-GERHTHTVKCCLDRVFINSAWTATFPYAEIEFLDFTGSD 602
Query: 624 HAPLLITVTSQPIEEGKKKKKKLFRFEQHLTLNHELAFHLRQAWQSGGDNAEQKLAQAKE 683
H P+L+ E ++ KLFRF+ L ++ +W++ N + E
Sbjct: 603 HKPVLVH-----FNESFPRRSKLFRFDNRLIDIPTFKRIVQTSWRT---NRNSRSTPITE 654
Query: 684 TIMALETEFGSIRKKLH-DLEQRLKAAQKWNPTEENIMRR------KEMENEFAELMGRE 736
I + ++ + + EQR+K Q RR +++ A+ E
Sbjct: 655 RISSCRQAMARLKHASNLNSEQRIKKLQSSLNRAMESTRRVDRQLIPQLQESLAKAFSDE 714
Query: 737 ELYWRQRSRATWLKEGDKNTSFFHGKANQRQKQNRIARIRDDHGNWVYKQDQVTTAFSNY 796
E+YW+Q+SR W+KEGD+NT +FH R QNR+ I DD G ++ ++
Sbjct: 715 EIYWKQKSRNQWMKEGDQNTGYFHACTKTRYSQNRVNTIMDDQGRMFTGDKEIGNHAQDF 774
Query: 797 FEGIFKSS----QPNNIEEVCQKIQNKLNQEMREHLEEEFTADEVAYALNQMHPLKAPGP 852
F IF ++ P + + + N +N + L +EF+ E+ A+ Q+ KAPGP
Sbjct: 775 FTNIFSTNGIKVSPIDFADFKSTVTNTVNLD----LTKEFSDTEIYDAICQIGDDKAPGP 830
Query: 853 DGFPALFYQKYWKLVGGDVTSQVLEILNKGVDPASLNQTFICLIPKVKAPENPMEFRPIS 912
DG A FY+ W +VG DV +V + S+N T IC+IPK+ P ++RPI+
Sbjct: 831 DGLTARFYKNCWDIVGYDVILEVKKFFETSFMKPSINHTNICMIPKITNPTTLSDYRPIA 890
Query: 913 LCNVIMKLVTKCIANRIKDVLGEVVGEQQSAFIPGRLITDNALTGFEVFHYMKKKRKGKK 972
LCNV+ K+++KC+ NR+K L +V + Q+AFIPGR+I DN + EV H +K +++ K
Sbjct: 891 LCNVLYKVISKCLVNRLKSHLNSIVSDSQAAFIPGRIINDNVMIAHEVMHSLKVRKRVSK 950
Query: 973 GYMALKLDMSKAYDRIEWDFLKQVLTTMGFPSKITELISICVSSVSYSLLVNGEPSPPFS 1032
YMA+K D+SKAYDR+EWDFL+ + GF +K I V SV YS+L+NG P +
Sbjct: 951 TYMAVKTDVSKAYDRVEWDFLETTMRLFGFCNKWIGWIMAAVKSVHYSVLINGSPHGYIT 1010
Query: 1033 PQRGLRQGDPLSPYLFILCVEAFSGLISNQIRLRNLHGIKVARGAPPINHLFFADDSLIF 1092
P RG+RQGDPLSPYLFILC + S LI+ + +L G+++ GAP I HL FADDSL F
Sbjct: 1011 PTRGIRQGDPLSPYLFILCGDILSHLINGRASSGDLRGVRIGNGAPAITHLQFADDSLFF 1070
Query: 1093 SRATQEEASSLLDVIRQYEQASGQLVNMDKSEISFSRNVPQTSMDTIRNRMGVKAVIVHD 1152
+A +L DV YE SGQ +N+ KS I+F V ++ ++ + +
Sbjct: 1071 CQANVRNCQALKDVFDVYEYYSGQKINVQKSMITFGSRVYGSTQSRLKQILEIPNQGGGG 1130
Query: 1153 KYLGLPTVIGHSKKAIFGKIQERVWRKLKGWKEKTLSKAGKEILIKAVAQAIPSYVMSCF 1212
KYLGLP G KK +F I +RV ++ W + LS AGKEI++K+VA A+P Y MSCF
Sbjct: 1131 KYLGLPEQFGRKKKEMFEYIIDRVKKRTSTWSARFLSPAGKEIMLKSVALAMPVYAMSCF 1190
Query: 1213 KLPNGICSKIESLLANFWWGQKENERKIHWAAWQHLCKTKNRGDLGFRNLEDFNRALLAK 1272
KLP GI S+IESLL NFWW + N+R I W AW+ L +K G LGFR+L FN ALLAK
Sbjct: 1191 KLPKGIVSEIESLLMNFWWEKASNQRGIPWVAWKRLQYSKKEGGLGFRDLAKFNDALLAK 1250
Query: 1273 QAWRLLNSEKSLLYKVWKAKYFPKCDLLKAGVGYQPSYAWRSVWGTLKFIEEGCKWSIGN 1332
QAWRL+ SL +V KA+YF +L A V Q SY W S+ + +++G + IG+
Sbjct: 1251 QAWRLIQYPNSLFARVMKARYFKDVSILDAKVRKQQSYGWASLLDGIALLKKGTRHLIGD 1310
Query: 1333 GKKVSIWKDPWLPGPDSGYVRTQDVPEFAHEKVSDLRLWEGGS---WNISKIDQLFNPAE 1389
G+ + I D + DS R + E E + GS W+ SKI Q + ++
Sbjct: 1311 GQNIRIGLDNIV---DSHPPRPLNTEETYKEMTINNLFERKGSYYFWDDSKISQFVDQSD 1367
Query: 1390 AQLIKSIRLSWRDSEDKLIWRWSRDGMFSVKSAYYQIQSQKIAATASGSNSP--SFSWKT 1447
I I L+ DK+IW ++ G ++V+S Y+ + + + N P S KT
Sbjct: 1368 HGFIHRIYLAKSKKPDKIIWNYNTTGEYTVRSGYW-LLTHDPSTNIPAINPPHGSIDLKT 1426
Query: 1448 -LWRVKIQNKVKHFMYRVINNLTPCRANLARRGIQIQEQCALCSQDVVETQDHLFLQCSW 1506
+W + I K+KHF++R ++ L RG++I C C ++ E+ +H C +
Sbjct: 1427 RIWNLPIMPKLKHFLWRALSQALATTERLTTRGMRIDPSCPRCHRE-NESINHALFTCPF 1485
Query: 1507 ARAAW-FHHSLGLRMDLVQTSFLEWLQSFCANQEDEIVAQVFHG------TWAIWKARNE 1559
A AW S +R L+ F E + + +D ++ FH W IWKARN
Sbjct: 1486 ATMAWRLSDSSLIRNQLMSNDFEENISNILNFVQDTTMSD-FHKLLPVWLIWRIWKARNN 1544
Query: 1560 SLFNNVQVHPATAMEKAQNLLAEWKEAQEHH----APCVQ-EKRPQQWSAPSQGRIKINV 1614
+FN + P+ + A+ +W A + H +P Q + +W P +K N
Sbjct: 1545 VVFNKFRESPSKTVLSAKAETHDWLNATQSHKKTPSPTRQIAENKIEWRNPPATYVKCNF 1604
Query: 1615 DAGWSGP--HSTGLGFVARDHRGIIMLAGTCLEAQRLDPLIAEAMALRWSLHTALEVSLD 1672
DAG+ +TG G++ R+H G + G+ A +PL AE AL +L
Sbjct: 1605 DAGFDVQKLEATG-GWIIRNHYGTPISWGSMKLAHTSNPLEAETKALLAALQQTWIRGYT 1663
Query: 1673 SVIFKLDSISVVKAMRTNSSLWTIQNLM*DCIYLASLFTSISFNHVSRNANVPAHTLASL 1732
V + D +++ + S ++ N + D + A+ F SI F + + N AH LA
Sbjct: 1664 QVFMEGDCQTLINLINGISFHSSLANHLEDISFWANKFASIQFGFIRKKGNKLAHVLAKY 1723
Query: 1733 ACSYNT 1738
C+Y+T
Sbjct: 1724 GCTYST 1729
>gb|AAQ19327.1| bZIP-like protein [Oryza sativa (japonica cultivar-group)]
Length = 2367
Score = 744 bits (1921), Expect = 0.0
Identities = 455/1334 (34%), Positives = 692/1334 (51%), Gaps = 76/1334 (5%)
Query: 409 SPRTVKVLQRIIKA----EDPDIVFLMETHKKNGELKN--------IVARLGFKNHLGVE 456
S R +K L++ ++A ED + L K G ++ + RLG + GV
Sbjct: 730 STRAMKRLKKGVEANTGVEDMEATSLGAAGKLAGPMRGQSVEKMSRLRGRLGLRGFTGVS 789
Query: 457 CRGEGRSSGGGLALLWKEDFNIDIISYSLHHITAS-HTNADQITCFLTGFYGYPESQNKI 515
G GGLAL W E ++D+ + +I A + ++ +T YG P +N+
Sbjct: 790 SEG----MSGGLALYWDESVSVDVKDINKRYIDAYVQLSPEEPQWHVTFVYGEPRVENRH 845
Query: 516 KSWDLLVRLKGETSGPWMCFGDFNEITSNAEKKGGIDRPIEHMKKFVRCLNQCGLEDMGF 575
+ W LL + +S PW GDFNE E R M+ F L C L D+GF
Sbjct: 846 RMWSLLRTIHQSSSLPWAVIGDFNETMWQFEHFSRTPRGEPQMQDFRDVLQDCELHDLGF 905
Query: 576 QGDPFTWCNGRKDEAHIQERLDRGVISQSFKEIWPASSVQHLLRYNSDHAPLLITVTSQP 635
+G P T+ N R+ +++ RLDR V +++I+ + V HL+ SDH P+L+ +
Sbjct: 906 KGVPHTYDNKREGWRNVKVRLDRVVADDKWRDIYSTAQVVHLVSPCSDHCPILLNLV--- 962
Query: 636 IEEGKKKKKKLFRFEQHLTLNHELAFHLRQAWQSGGDNAEQKLAQAKETIMALETEFGS- 694
+++ + ++K +E E + +AW G+ A+ L + + + T S
Sbjct: 963 VKDPHQLRQKCLHYEIVWEREPEATQVIEEAWVVAGEKAD--LGDINKALAKVMTALRSW 1020
Query: 695 IRKKLHDLEQRLKAAQKW--NPTEENIMRR--KEMENEFAELMGREELYWRQRSRATWLK 750
R K+ ++ + L+ A+K E N R + + EL+ REE+ W QRSR WLK
Sbjct: 1021 SRAKVKNVGRELEKARKKLAELIESNADRTVIRNATDHMNELLYREEMLWLQRSRVNWLK 1080
Query: 751 EGDKNTSFFHGKANQRQKQNRIARIRDDHGNWVYKQDQVTTAFSNYFEGIFKSSQPNNIE 810
+ D+NT FFH +A R K+N+I+++RD + ++ + + YF+ ++ + N E
Sbjct: 1081 DEDRNTKFFHSRAVWRAKKNKISKLRDANETVHSSTMKLESMATEYFQDVYTADPNLNPE 1140
Query: 811 EVCQKIQNKLNQEMREHLEEEFTADEVAYALNQMHPLKAPGPDGFPALFYQKYWKLVGGD 870
V + IQ K+ M E L E+FT DE++ A+ Q+ PLK+PGPDGFPA FYQ+ W + D
Sbjct: 1141 TVTRLIQEKVTDIMNEKLCEDFTEDEISQAIFQIGPLKSPGPDGFPARFYQRNWGTIKAD 1200
Query: 871 VTSQVLEILNKGVDPASLNQTFICLIPKVKAPENPMEFRPISLCNVIMKLVTKCIANRIK 930
+ V G+ P +N T I LIPK + P + +FRPISLCNV+ K+V+KC+ NR++
Sbjct: 1201 IIGAVRRFFQTGLMPEGVNDTAIVLIPKKEQPVDLRDFRPISLCNVVYKVVSKCLVNRLR 1260
Query: 931 DVLGEVVGEQQSAFIPGRLITDNALTGFEVFHYMKKKRKGKKGYMALKLDMSKAYDRIEW 990
+L ++V +QSAF+ GR+ITDNAL FE FH M+K +K A KLD+SKAYDR++W
Sbjct: 1261 PILDDLVSVEQSAFVQGRMITDNALLAFECFHAMQKNKKANHAACAYKLDLSKAYDRVDW 1320
Query: 991 DFLKQVLTTMGFPSKITELISICVSSVSYSLLVNGEPSPPFSPQRGLRQGDPLSPYLFIL 1050
FL+ + +GF + I CV+SV Y + NG F+P RGLRQGDPL P+LF+
Sbjct: 1321 RFLEMAMNKLGFARRWVNWIMKCVTSVRYMVKFNGTLLQSFAPTRGLRQGDPLLPFLFLF 1380
Query: 1051 CVEAFSGLISNQIRLRNLHGIKVARGAPPINHLFFADDSLIFSRATQEEASSLLDVIRQY 1110
+ S L+ ++ +L KV R AP I+HL FADD+L+F +A Q EA + +V+ Y
Sbjct: 1381 VADGLSLLLKEKVAQNSLTPFKVCRAAPGISHLLFADDTLLFFKAHQREAEVVKEVLSSY 1440
Query: 1111 EQASGQLVNMDKSEISFSRNVPQTSMDTIRNRMGVKAVIVHDKYLGLPTVIGHSKKAIFG 1170
+GQL+N K I + I + V+ D+YLG PT G K F
Sbjct: 1441 AMGTGQLINPAKCSILMGGASTPAVSEAISEILQVERDRFEDRYLGFPTPEGRMHKGRFQ 1500
Query: 1171 KIQERVWRKLKGWKEKTLSKAGKEILIKAVAQAIPSYVMSCFKLPNGICSKIESLLANFW 1230
+Q ++W+++ W E LS GKE+LIKAV QAIP YVM FKLP + + L NFW
Sbjct: 1501 SLQAKIWKRVIQWGENHLSTGGKEVLIKAVIQAIPVYVMGIFKLPESVIDDLTKLTKNFW 1560
Query: 1231 WGQKENERKIHWAAWQHLCKTKNRGDLGFRNLEDFNRALLAKQAWRLLNSEKSLLYKVWK 1290
W +RK HW AW L K K+ G LGFR+ FN+ALLA+QAWRL+ SL +V K
Sbjct: 1561 WDSMNGQRKTHWKAWDSLTKPKSLGGLGFRDYRLFNQALLARQAWRLITYPDSLCARVLK 1620
Query: 1291 AKYFPKCDLLKAGVGYQPSYAWRSVWGTLKFIEEGCKWSIGNGKKVSIWKDPWLPGPDSG 1350
AKYFP L+ G S AWRS+ L +++G W +GNG + IW+D WLP S
Sbjct: 1621 AKYFPHGSLIDTSFGSNSSPAWRSIEYGLDLLKKGIIWRVGNGNSIRIWRDSWLPRDHSR 1680
Query: 1351 YVRTQDVPEFAHEKVSDLRLWEGGSWNISKIDQLFNPAEAQLIKSIRLSWRDSEDKLIWR 1410
T + VSDL + E GSW++ KI Q F+ +A++I +I +S R ED + W
Sbjct: 1681 RPITGKA-NCRLKWVSDL-ITEDGSWDVPKIHQYFHNLDAEVILNICISSRSEEDFIAWH 1738
Query: 1411 WSRDGMFSVKSAYYQIQSQKI---AATASGSNSPSFSWKTLWRVKIQNKVKHFMYRVINN 1467
++GMFSV+SA Y++ +Q + +++SG+N+ + +W+ +W+ K+ KVK F +RV +N
Sbjct: 1739 PDKNGMFSVRSA-YRLAAQLVNIEESSSSGTNNINKAWEMIWKCKVPQKVKIFAWRVASN 1797
Query: 1468 LTPCRANLARRGIQIQEQCALCSQDVVETQDHLFLQCSWARAAW--FHHSLGLRMDLVQT 1525
N +R ++ + C +C ++ E H +C A W H S + +D+ +
Sbjct: 1798 CLATMVNKKKRKLEQSDMCQICDRE-NEDDAHALCRCIQASQLWSCMHKSGSVSVDIKAS 1856
Query: 1526 SFLEWLQSFCANQEDEIVAQVFHGT-WAIWKARNESLFNNVQVHPATAMEKAQ---NLLA 1581
+ C + E +F T W W RNE + T+ Q +LL
Sbjct: 1857 VLGRFWLFDCLEKIPEYEQAMFLMTLWRNWYVRNELIHGKSAPPTETSQRFIQSYVDLLF 1916
Query: 1582 EWKEAQE-------------------------HHAPCVQEKRPQQWSAPSQGRIKINVDA 1616
+ ++A + +H PC W P G +K+NVD
Sbjct: 1917 QIRQAPQADLVKGKHVVRTVPLKGGPKYRVLNNHQPC--------WERPKDGWMKLNVDG 1968
Query: 1617 GWSGPHST-GLGFVARDHRGIIMLAGTCLEAQRL-DPLIAEAMALRWSLHTALEVSLDSV 1674
+ GLG + R+ G I+ +C +R +PL +E A L A+ +L +
Sbjct: 1969 SFDASSGKGGLGMILRNSAGDIIFT-SCKPLERCNNPLESELRACVEGLKLAIHWTLLPI 2027
Query: 1675 IFKLDSISVVKAMR 1688
+ D SVV+ ++
Sbjct: 2028 QVETDCASVVQLLQ 2041
>gb|AAD24831.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
thaliana] gi|25408166|pir||G84721 hypothetical protein
At2g31520 [imported] - Arabidopsis thaliana
Length = 1524
Score = 732 bits (1890), Expect = 0.0
Identities = 454/1339 (33%), Positives = 689/1339 (50%), Gaps = 56/1339 (4%)
Query: 431 METHKKNGELKNIVARLGFKNHLGVECRGEGRSSGGGLALLWKEDFNIDIISYSLHHITA 490
+ET + ++ + LGF N + G GGLAL+WK + ++ +IS +
Sbjct: 190 LETLNQCDKVCKLAYDLGFPNVITQPPNGRS----GGLALMWKNNVSLSLISQD-ERLID 244
Query: 491 SHTNADQITCFLTGFYGYPESQNKIKSWDLLVRLKGETSGPWMCFGDFNEITSNAEKKGG 550
SH + + +L+ YG+P + + W L + + W+ GDFNEI SNAEK GG
Sbjct: 245 SHVTFNNKSFYLSCVYGHPTQSERHQLWQTLEHISDNRNAEWLLVGDFNEILSNAEKIGG 304
Query: 551 IDRPIEHMKKFVRCLNQCGLEDMGFQGDPFTWCNGRKDEAHIQERLDRGVISQSFKEIWP 610
R + F ++ C +EDM +GD F+W G + ++ LDR I+ ++ +P
Sbjct: 305 PMREEWTFRNFRNMVSHCDIEDMRSKGDRFSWV-GERHTHTVKCCLDRVFINSAWTATFP 363
Query: 611 ASSVQHLLRYNSDHAPLLITVTSQPIEEGKKKKKKLFRFEQHLTLNHELAFHLRQAWQSG 670
+ + L SDH P+L+ E ++ KLFRF+ L ++ +W++
Sbjct: 364 YAETEFLDFTGSDHKPVLVH-----FNESFPRRSKLFRFDNRLIDIPTFKRIVQTSWRT- 417
Query: 671 GDNAEQKLAQAKETIMALETEFGSIRKKLH-DLEQRLKAAQKWNPTEENIMRR------K 723
N + E I + ++ + + EQR+K Q RR
Sbjct: 418 --NRNSRSTPITERISSCRQAMARLKHASNLNSEQRIKKLQSSLNRAMESTRRVDRQLIP 475
Query: 724 EMENEFAELMGREELYWRQRSRATWLKEGDKNTSFFHGKANQRQKQNRIARIRDDHGNWV 783
+++ A+ EE+YW+Q+SR W+KEGD+NT +FH R QNR+ I DD G
Sbjct: 476 QLQESLAKAFSDEEIYWKQKSRNQWMKEGDQNTGYFHACTKTRYSQNRVNTIMDDQGRMF 535
Query: 784 YKQDQVTTAFSNYFEGIFKSS----QPNNIEEVCQKIQNKLNQEMREHLEEEFTADEVAY 839
++ ++F IF ++ P + + + N +N + L +EF+ E+
Sbjct: 536 TGDKEIGNHAQDFFTNIFSTNGIKVSPIDFADFKSTVTNTVNLD----LTKEFSDTEIYD 591
Query: 840 ALNQMHPLKAPGPDGFPALFYQKYWKLVGGDVTSQVLEILNKGVDPASLNQTFICLIPKV 899
A+ Q+ KAPGPDG A FY+ W +VG DV +V + S+N T IC+IPK+
Sbjct: 592 AICQIGDDKAPGPDGLTARFYKNCWDIVGYDVILEVKKFFETSFMKPSINHTNICMIPKI 651
Query: 900 KAPENPMEFRPISLCNVIMKLVTKCIANRIKDVLGEVVGEQQSAFIPGRLITDNALTGFE 959
P ++RPI+LCNV+ K+++KC+ NR+K L +V + Q+AFIPGR+I DN + E
Sbjct: 652 TNPTTLSDYRPIALCNVLYKVISKCLVNRLKSHLNSIVSDSQAAFIPGRIINDNVMIAHE 711
Query: 960 VFHYMKKKRKGKKGYMALKLDMSKAYDRIEWDFLKQVLTTMGFPSKITELISICVSSVSY 1019
V H +K +++ K YMA+K D+SKAYDR+EWDFL+ + GF +K I V SV Y
Sbjct: 712 VMHSLKVRKRVSKTYMAVKTDVSKAYDRVEWDFLETTMRLFGFCNKWIGWIMAAVKSVHY 771
Query: 1020 SLLVNGEPSPPFSPQRGLRQGDPLSPYLFILCVEAFSGLISNQIRLRNLHGIKVARGAPP 1079
S+L+NG P +P RG+RQGDPLSPYLFILC + S LI+ + +L G+++ GAP
Sbjct: 772 SVLINGSPHGYITPTRGIRQGDPLSPYLFILCGDILSHLINGRASSGDLRGVRIGNGAPA 831
Query: 1080 INHLFFADDSLIFSRATQEEASSLLDVIRQYEQASGQLVNMDKSEISFSRNVPQTSMDTI 1139
I HL FADDSL F +A +L DV YE SGQ +N+ KS I+F V ++ +
Sbjct: 832 ITHLQFADDSLFFCQANVRNCQALKDVFDVYEYYSGQKINVQKSMITFGSRVYGSTQSKL 891
Query: 1140 RNRMGVKAVIVHDKYLGLPTVIGHSKKAIFGKIQERVWRKLKGWKEKTLSKAGKEILIKA 1199
+ + + KYLGLP G KK +F I +RV ++ W + LS AGKEI++K+
Sbjct: 892 KQILEIPNQGGGGKYLGLPEQFGRKKKEMFEYIIDRVKKRTSTWSARFLSPAGKEIMLKS 951
Query: 1200 VAQAIPSYVMSCFKLPNGICSKIESLLANFWWGQKENERKIHWAAWQHLCKTKNRGDLGF 1259
VA A+P Y MSCFKLP GI S+IESLL NFWW + N+R I W AW+ L +K G LGF
Sbjct: 952 VALAMPVYAMSCFKLPKGIVSEIESLLMNFWWEKASNQRGIPWVAWKRLQYSKKEGGLGF 1011
Query: 1260 RNLEDFNRALLAKQAWRLLNSEKSLLYKVWKAKYFPKCDLLKAGVGYQPSYAWRSVWGTL 1319
R+L FN ALLAKQAWRL+ SL +V KA+YF +L A V Q SY W S+ +
Sbjct: 1012 RDLAKFNDALLAKQAWRLIQYPNSLFARVMKARYFKDVSILDAKVRKQQSYGWASLLDGI 1071
Query: 1320 KFIEEGCKWSIGNGKKVSIWKDPWLPGPDSGYVRTQDVPEFAHEKVSDLRLWEGGS---W 1376
+++G + IG+G+ + I D + DS R + E E + GS W
Sbjct: 1072 ALLKKGTRHLIGDGQNIRIGLDNIV---DSHPPRPLNTEETYKEMTINNLFERKGSYYFW 1128
Query: 1377 NISKIDQLFNPAEAQLIKSIRLSWRDSEDKLIWRWSRDGMFSVKSAYYQIQSQKIAATAS 1436
+ SKI Q + ++ I I L+ DK+IW ++ G ++V+S Y+ + + +
Sbjct: 1129 DDSKISQFVDQSDHGFIHRIYLAKSKKPDKIIWNYNTTGEYTVRSGYW-LLTHDPSTNIP 1187
Query: 1437 GSNSP--SFSWKT-LWRVKIQNKVKHFMYRVINNLTPCRANLARRGIQIQEQCALCSQDV 1493
N P S KT +W + I K+KHF++R ++ L RG++I C C ++
Sbjct: 1188 AINPPHGSIDLKTRIWNLPIMPKLKHFLWRALSQALATTERLTTRGMRIDPICPRCHRE- 1246
Query: 1494 VETQDHLFLQCSWARAAWF-HHSLGLRMDLVQTSFLEWLQSFCANQEDEIVAQVFHG--- 1549
E+ +H C +A AW+ S +R L+ F E + + +D ++ FH
Sbjct: 1247 NESINHALFTCPFATMAWWLSDSSLIRNQLMSNDFEENISNILNFVQDTTMSD-FHKLLP 1305
Query: 1550 ---TWAIWKARNESLFNNVQVHPATAMEKAQNLLAEWKEAQEHH----APCVQ-EKRPQQ 1601
W IWKARN +FN + P+ + A+ +W A + H +P Q + +
Sbjct: 1306 VWLIWRIWKARNNVVFNKFRESPSKTVLSAKAETHDWLNATQSHKKTPSPTRQIAENKIE 1365
Query: 1602 WSAPSQGRIKINVDAGWSGP--HSTGLGFVARDHRGIIMLAGTCLEAQRLDPLIAEAMAL 1659
W P +K N DAG+ +TG G++ R+H G + G+ A +PL AE AL
Sbjct: 1366 WRNPPATYVKCNFDAGFDVQKLEATG-GWIIRNHYGTPISWGSMKLAHTSNPLEAETKAL 1424
Query: 1660 RWSLHTALEVSLDSVIFKLDSISVVKAMRTNSSLWTIQNLM*DCIYLASLFTSISFNHVS 1719
+L V + D +++ + S ++ N + D + A+ F SI F +
Sbjct: 1425 LAALQQTWIRGYTQVFMEGDCQTLINLINGISFHSSLANHLEDISFWANKFASIQFGFIR 1484
Query: 1720 RNANVPAHTLASLACSYNT 1738
R N AH LA C+Y+T
Sbjct: 1485 RKGNKLAHVLAKYGCTYST 1503
>gb|AAD03565.2| putative non-LTR retroelement reverse transcriptase [Arabidopsis
thaliana] gi|25411819|pir||H84557 hypothetical protein
At2g17910 [imported] - Arabidopsis thaliana
Length = 1344
Score = 731 bits (1888), Expect = 0.0
Identities = 426/1285 (33%), Positives = 685/1285 (53%), Gaps = 45/1285 (3%)
Query: 425 PDIVFLMETHKKNGELKNIVARLGFKNHLGVECRGEGRSSGGGLALLWKEDFNIDIISYS 484
PDI+FLMET + + LG+ VE EGRS GGLA+ WK I+ + Y+
Sbjct: 7 PDILFLMETKNSQDFVYKVFCWLGYDFIHTVE--PEGRS--GGLAIFWKSHLEIEFL-YA 61
Query: 485 LHHITASHTNADQITCFLTGFYGYPESQNKIKSWDLLVRLKGETSGPWMCFGDFNEITSN 544
++ ++ F++ YG P + + K W+ L + + + W GDFN+I SN
Sbjct: 62 DKNLMDLQVSSRNKVWFISCVYGLPVTHMRPKLWEHLNSIGLKRAEAWCLIGDFNDIRSN 121
Query: 545 AEKKGGIDRPIEHMKKFVRCLNQCGLEDMGFQGDPFTWCNGRKDEAHIQERLDRGVISQS 604
EK GG R + F L C + ++G G+ FTW R D+ +Q +LDR + +
Sbjct: 122 DEKLGGPRRSPSSFQCFEHMLLNCSMHELGSTGNSFTWGGNRNDQ-WVQCKLDRCFGNPA 180
Query: 605 FKEIWPASSVQHLLRYNSDHAPLLITVTSQPIEEGKKKKKKLFRFEQHLTLNHELAFHLR 664
+ I+P + L ++ SDH P+L+ T+ + + FR+++ L + +
Sbjct: 181 WFSIFPNAHQWFLEKFGSDHRPVLVKFTND-----NELFRGQFRYDKRLDDDPYCIEVIH 235
Query: 665 QAWQS----GGDNAEQKLAQAKETIMALETEFGSIRKKLHDL--EQRLKAAQKWNPTEEN 718
++W S G ++ L + + I S+ K D + R+K +K E++
Sbjct: 236 RSWNSAMSQGTHSSFFSLIECRRAI--------SVWKHSSDTNAQSRIKRLRKDLDAEKS 287
Query: 719 IM-----RRKEMENEFAELMGREELYWRQRSRATWLKEGDKNTSFFHGKANQRQKQNRIA 773
I R + ++++ + G EEL+WRQ+SR WL GDKNT FFH + + +N ++
Sbjct: 288 IQIPCWPRIEYIKDQLSLAYGDEELFWRQKSRQKWLAGGDKNTGFFHATVHSERLKNELS 347
Query: 774 RIRDDHGNWVYKQDQVTTAFSNYFEGIFKSSQPNNIEEVCQKIQNKLNQEMREHLEEEFT 833
+ D++ + S++FE +F S+ + +Q K+ EM +L +E T
Sbjct: 348 FLLDENDQEFTRNSDKGKIASSFFENLFTSTYILTHNNHLEGLQAKVTSEMNHNLIQEVT 407
Query: 834 ADEVAYALNQMHPLKAPGPDGFPALFYQKYWKLVGGDVTSQVLEILNKGVDPASLNQTFI 893
EV A+ ++ APGPDGF ALF+Q++W LV + +++ GV P N T I
Sbjct: 408 ELEVYNAVFSINKESAPGPDGFTALFFQQHWDLVKHQILTEIFGFFETGVLPQDWNHTHI 467
Query: 894 CLIPKVKAPENPMEFRPISLCNVIMKLVTKCIANRIKDVLGEVVGEQQSAFIPGRLITDN 953
CLIPK+ +P+ + RPISLC+V+ K+++K + R+K L +V QSAF+P RLI+DN
Sbjct: 468 CLIPKITSPQRMSDLRPISLCSVLYKIISKILTQRLKKHLPAIVSTTQSAFVPQRLISDN 527
Query: 954 ALTGFEVFHYMKKKRKGKKGYMALKLDMSKAYDRIEWDFLKQVLTTMGFPSKITELISIC 1013
L E+ H ++ + K +MA K DMSKAYDR+EW FL+ ++T +GF +K I C
Sbjct: 528 ILVAHEMIHSLRTNDRISKEHMAFKTDMSKAYDRVEWPFLETMMTALGFNNKWISWIMNC 587
Query: 1014 VSSVSYSLLVNGEPSPPFSPQRGLRQGDPLSPYLFILCVEAFSGLISNQIRLRNLHGIKV 1073
V+SVSYS+L+NG+P P RG+RQGDPLSP LF+LC EA +++ + + GI+
Sbjct: 588 VTSVSYSVLINGQPYGHIIPTRGIRQGDPLSPALFVLCTEALIHILNKAEQAGKITGIQF 647
Query: 1074 ARGAPPINHLFFADDSLIFSRATQEEASSLLDVIRQYEQASGQLVNMDKSEISFSRNVPQ 1133
+NHL FADD+L+ +AT++E L+ + QY Q SGQ++N++KS I+F +NV
Sbjct: 648 QDKKVSVNHLLFADDTLLMCKATKQECEELMQCLSQYGQLSGQMINLNKSAITFGKNVDI 707
Query: 1134 TSMDTIRNRMGVKAVIVHDKYLGLPTVIGHSKKAIFGKIQERVWRKLKGWKEKTLSKAGK 1193
D I++R G+ KYLGLP + SK+ +FG I+E++ +L GW KTLS+ GK
Sbjct: 708 QIKDWIKSRSGISLEGGTGKYLGLPECLSGSKRDLFGFIKEKLQSRLTGWYAKTLSQGGK 767
Query: 1194 EILIKAVAQAIPSYVMSCFKLPNGICSKIESLLANFWWGQKENERKIHWAAWQHLCKTKN 1253
E+L+K++A A+P YVMSCFKLP +C K+ +++ +FWW + +RKIHW +WQ L K+
Sbjct: 768 EVLLKSIALALPVYVMSCFKLPKNLCQKLTTVMMDFWWNSMQQKRKIHWLSWQRLTLPKD 827
Query: 1254 RGDLGFRNLEDFNRALLAKQAWRLLNSEKSLLYKVWKAKYFPKCDLLKAGVGYQPSYAWR 1313
+G GF++L+ FN+ALLAKQAWR+L + SL +V++++YF D L A G +PSYAWR
Sbjct: 828 QGGFGFKDLQCFNQALLAKQAWRVLQEKGSLFSRVFQSRYFSNSDFLSATRGSRPSYAWR 887
Query: 1314 SVWGTLKFIEEGCKWSIGNGKKVSIWKDPWLPGPDSGYVRTQDVPEFAHE--KVSDLRLW 1371
S+ + + +G + IGNG+K +W D WL D R + F + KVS L
Sbjct: 888 SILFGRELLMQGLRTVIGNGQKTFVWTDKWL--HDGSNRRPLNRRRFINVDLKVSQLIDP 945
Query: 1372 EGGSWNISKIDQLFNPAEAQLIKSIRLSWRDSEDKLIWRWSRDGMFSVKSAYYQIQSQ-- 1429
+WN++ + LF + ++I R + ED W S +G++SVK+ Y + Q
Sbjct: 946 TSRNWNLNMLRDLFPWKDVEIILKQRPLF-FKEDSFCWLHSHNGLYSVKTGYEFLSKQVH 1004
Query: 1430 -KIAATASGSNSPSFSWKTLWRVKIQNKVKHFMYRVINNLTPCRANLARRGIQIQEQCAL 1488
++ A S + + +W + K++ F+++ ++ P L RGI+ + C +
Sbjct: 1005 HRLYQEAKVKPSVNSLFDKIWNLHTAPKIRIFLWKALHGAIPVEDRLRTRGIRSDDGCLM 1064
Query: 1489 CSQDVVETQDHLFLQCSWARAAW-FHHSLGLRMDLVQTSFLEWLQSFCANQEDEIVAQVF 1547
C + ET +H+ +C AR W H + + + + Q++++ +
Sbjct: 1065 CDTE-NETINHILFECPLARQVWAITHLSSAGSEFSNSVYTNMSRLIDLTQQNDLPHHLR 1123
Query: 1548 HGT----WAIWKARNESLFNNVQVHPATAMEKAQNLLAEWKEAQEHHAPCVQEKRPQQWS 1603
+ W +WK RN LF T ++KA EW AQ H + + +W
Sbjct: 1124 FVSPWILWFLWKNRNALLFEGKGSITTTLVDKAYEAYHEWFSAQTHMQNDEKHLKITKWC 1183
Query: 1604 APSQGRIKINVDAGWSGPHS-TGLGFVARDHRGIIMLAGTCLEAQRLDPLIAEAMALRWS 1662
P G +K N+ WS H +G +V RD +G ++L + P A+ + W+
Sbjct: 1184 PPLPGELKCNIGFAWSKQHHFSGASWVVRDSQGKVLLHSRRSFNEVHSPYSAKIRSWEWA 1243
Query: 1663 LHTALEVSLDSVIFKLDSISVVKAM 1687
L + D VIF + +++A+
Sbjct: 1244 LESMTHHHFDRVIFASSTHEIIQAL 1268
>gb|AAC33961.1| contains similarity to reverse trancriptase (Pfam: rvt.hmm, score:
42.57) [Arabidopsis thaliana] gi|7486711|pir||T01893
hypothetical protein F8M12.22 - Arabidopsis thaliana
Length = 1662
Score = 685 bits (1767), Expect = 0.0
Identities = 432/1367 (31%), Positives = 672/1367 (48%), Gaps = 139/1367 (10%)
Query: 386 GGAGRPALPGAMKTISWNCRGVGSPRTVKVLQRIIKAEDPDIVFLMETHKKNGELKNIVA 445
GGAG P G+G P T L + K D++FL+ET K + N+ +
Sbjct: 385 GGAGSP--------------GIGVPLTQSQLSNLCKVFKFDVLFLIETLNKCEVISNLAS 430
Query: 446 RLGFKNHLGVECRGEGRSSGGGLALLWKEDFNIDIISYSLHHITASHTNADQITCFLTGF 505
LGF N + +G GGLALLWK+ + + HI H + + I +L+
Sbjct: 431 VLGFPNVITQPPQGHS----GGLALLWKDSVRLSNLYQDDRHIDV-HISINNINFYLSRV 485
Query: 506 YGYPESQNKIKSWDLLVRLKGETSGPWMCFGDFNEITSNAEKKGGIDRPIEHMKKFVRCL 565
YG+P + W L + PW+ GDFNEI SN EK GG R + F +
Sbjct: 486 YGHPCQSERHSLWTHFENLSKTRNDPWILIGDFNEILSNNEKIGGPQRDEWTFRGFRNMV 545
Query: 566 NQCGLEDMGFQGDPFTWCNGRKDEAHIQERLDRGVISQSFKEIWPASSVQHLLRYNSDHA 625
+ C L+D+ GD F+W G + ++ LDR I+ ++P + ++ L SDH
Sbjct: 546 STCDLKDIRSIGDRFSWV-GERHSHTVKCCLDRAFINSEGAFLFPFAELEFLEFTGSDHK 604
Query: 626 PLLITVTSQPIEEGKKKKKKLFRFEQHLTLNHELAFHLRQAWQSGGDNAEQKLAQAKETI 685
PL ++ +E+ + +K + FRF++ L +++ W + + L T
Sbjct: 605 PLFLS-----LEKTETRKMRPFRFDKRLLEVPHFKTYVKAGWNKAINGQRKHLPDQVRTC 659
Query: 686 MALETEFG-----SIRKKLHDLEQRL-KAAQKWNPTEENIMRRKEMENEFAELMGREELY 739
+ + R +++ L+ L KA N TE + ++ E EE Y
Sbjct: 660 RQAMAKLKHKSNLNSRIRINQLQAALDKAMSSVNRTERRTI--SHIQRELTVAYRDEERY 717
Query: 740 WRQRSRATWLKEGDKNTSFFHGKANQRQKQNRIARIRDDHGNWVYKQD-QVTTAFSNYFE 798
W+Q+SR W+KEGD+NT FFH R NR+ I+D+ G +Y+ D ++ +F
Sbjct: 718 WQQKSRNQWMKEGDRNTEFFHACTKTRFSVNRLVTIKDEEG-MIYRGDKEIGVHAQEFFT 776
Query: 799 GIFKSS-QPNNIEEVCQKIQNKLNQEMREHLEEEFTADEVAYALNQMHPLKAPGPDGFPA 857
+++S+ +P +I + + + +++ + L ++ + E+ A+ + KAPGPDG A
Sbjct: 777 KVYESNGRPVSIIDFAG-FKPIVTEQINDDLTKDLSDLEIYNAICHIGDDKAPGPDGLTA 835
Query: 858 LFYQKYWKLVGGDVTSQVLEILNKGVDPASLNQTFICLIPKVKAPENPMEFRPISLCNVI 917
FY+ W++VG DV +V S+N T IC+IPK+ PE ++RPI+LCNV+
Sbjct: 836 RFYKSCWEIVGPDVIKEVKIFFRTSYMKQSINHTNICMIPKITNPETLSDYRPIALCNVL 895
Query: 918 MKLVTKCIANRIKDVLGEVVGEQQSAFIPGRLITDNALTGFEVFHYMKKKRKGKKGYMAL 977
K+++KC+ R+K L +V + Q+AFIPGRL+ DN + E+ H +K +++ + YMA+
Sbjct: 896 YKIISKCLVERLKGHLDAIVSDSQAAFIPGRLVNDNVMIAHEMMHSLKTRKRVSQSYMAV 955
Query: 978 KLDMSKAYDRIEWDFLKQVLTTMGFPSKITELISICVSSVSYSLLVNGEPSPPFSPQRGL 1037
K D+SKAYDR+EW+FL+ + GF + I V SV+YS+LVNG P PQRG+
Sbjct: 956 KTDVSKAYDRVEWNFLETTMRLFGFSETWIKWIMGAVKSVNYSVLVNGIPHGTIQPQRGI 1015
Query: 1038 RQGDPLSPYLFILCVEAFSGLISNQIRLRNLHGIKVARGAPPINHLFFADDSLIFSRATQ 1097
RQGDPLSPYLFILC + + LI N++ ++ GI++ G P + HL FADDSL F ++
Sbjct: 1016 RQGDPLSPYLFILCADILNHLIKNRVAEGDIRGIRIGNGVPGVTHLQFADDSLFFCQSNV 1075
Query: 1098 EEASSLLDVIRQYEQASGQLVNMDKSEISFSRNVPQTSMDTIRNRMGVKAVIVHDKYLGL 1157
+L DV YE SGQ +NM KS I+F V T+ + ++N +G+++ KYLGL
Sbjct: 1076 RNCQALKDVFDVYEYYSGQKINMSKSMITFGSRVHGTTQNRLKNILGIQSHGGGGKYLGL 1135
Query: 1158 PTVIGHSKKAIFGKIQERVWRKLKGWKEKTLSKAGKEILIKAVAQAIPSYVMSCFKLPNG 1217
P G K+ +F I ERV ++ W K LS AGKEI++K+VA ++P Y MSCFKLP
Sbjct: 1136 PEQFGRKKRDMFNYIIERVKKRTSSWSAKYLSPAGKEIMLKSVAMSMPVYAMSCFKLPLN 1195
Query: 1218 ICSKIESLLANFWWGQKENERKIHWAAWQHLCKTKNRGDLGFRNLEDFNRALLAKQAWRL 1277
I S+IE+LL NFWW + +R+I W AW+ L +K G LGFR+L FN ALLAKQ WR+
Sbjct: 1196 IVSEIEALLMNFWWEKNAKKREIPWIAWKRLQYSKKEGGLGFRDLAKFNDALLAKQVWRM 1255
Query: 1278 LNSEKSLLYKVWKAKYFPKCDLLKAGVGYQPSYAWRSVWGTLKFIEEGCKWSIGNGKKVS 1337
+N+ SL ++ KA+YF + +L A SY W S+ L I++G ++ +G+GK
Sbjct: 1256 INNPNSLFARIMKARYFREDSILDAKRQRYQSYGWTSMLAGLDVIKKGSRFIVGDGK--- 1312
Query: 1338 IWKDPWLPGPDSGYVRTQDVPEFAHEKVSDLRLWEGGSWNISKIDQLFNPAEAQLIKSIR 1397
+G R WN I QL +P + + + +
Sbjct: 1313 -----------TGSYR---------------------YWNAHLISQLVSPDDHRFVMNHH 1340
Query: 1398 LSWRDSEDKLIWRWSRDGMFSVKSAYYQIQSQKIAATASGSNSPSFSWKTLWRVKIQNKV 1457
LS +DKL+W +S G + TLW++ I K+
Sbjct: 1341 LSRIVHQDKLVWNYSSSGDY-----------------------------TLWKLPIIPKI 1371
Query: 1458 KHFMYRVINNLTPCRANLARRGIQIQEQCALCSQDVVETQDHLFLQCSWARAAWF----- 1512
K+ ++R I+ P R+ L RG+ I C C + ET +H+ C +A + W
Sbjct: 1372 KYMLWRTISKALPTRSRLLTRGMDIDPHCPRCPTE-EETINHVLFTCPYAASIWGLSNFP 1430
Query: 1513 ---HHSLGLRMDLVQTSFLEWLQSFCANQEDEIVAQVFHGTWAIWKARNESLFNNVQVHP 1569
H+ + + + + N E + F W +WKARN +FN
Sbjct: 1431 WLPGHTFSQDTEENISFLINSFSNNTLNTEQRLAP--FWLIWRLWKARNNLVFNKFSESC 1488
Query: 1570 ATAMEKAQNLLAEWKEAQEHHAPCVQEKRPQ-----QWSAPSQGRIKINVDAGWSGPHST 1624
+ + + + + EW ++ R +W P +K N DAG++G ++
Sbjct: 1489 SRVVTQTEAEVNEWLQSVNRREDASVLTRSSHRANVRWKKPVFPLVKCNFDAGFTGNNTQ 1548
Query: 1625 GLGFVARDHRGIIMLAGTCLEAQRLDPLIAEAMALRWSLHTALEVSLDSVIFKLDSISVV 1684
G +I E AL ++ A V F+ D ++
Sbjct: 1549 STG----------------------GWIIPETKALLIAMQQAWVRGYKCVQFEGDCEILI 1586
Query: 1685 KAMRTNSSLWTIQNLM*DCIYLASLFTSISFNHVSRNANVPAHTLAS 1731
KA+ S I +L+ D + AS F+++ F +R N AH LAS
Sbjct: 1587 KAINGAISRCEITSLLRDVDFWASRFSTVVFTFTNRLCNNTAHLLAS 1633
>gb|AAG51783.1| reverse transcriptase, putative; 16838-20266 [Arabidopsis thaliana]
gi|25405244|pir||E96519 probable reverse transcriptase,
16838-20266 [imported] - Arabidopsis thaliana
Length = 1142
Score = 676 bits (1743), Expect = 0.0
Identities = 394/1140 (34%), Positives = 587/1140 (50%), Gaps = 54/1140 (4%)
Query: 622 SDHAPLLITVTSQPIEEGKKKKKKLFRFEQHLTLNHELAFHLRQAWQSGGDNAE----QK 677
SDH+P++ T+ + I GK+ FRF++ L + Q W E +K
Sbjct: 4 SDHSPVIATIADK-IPRGKQN----FRFDKRWIGKDGLLEAISQGWNLDSGFREGQFVEK 58
Query: 678 LAQAKETIMALETE---FGSIRKKLHDLEQRLKAAQKWNPTEENIMRRKEMENEFAELMG 734
L + I FG R+ + DL+ L AQ+ + + E+ E
Sbjct: 59 LTNCRRAISKWRKSLIPFG--RQTIEDLKAELDVAQRDDDRSREEIT--ELTLRLKEAYR 114
Query: 735 REELYWRQRSRATWLKEGDKNTSFFHGKANQRQKQNRIARIRDDHGNWVYKQDQVTTAFS 794
EE YW Q+SR+ W+K GD N+ FFH QR+ +NRI + D++G W + D +
Sbjct: 115 DEEQYWYQKSRSLWMKLGDNNSKFFHALTKQRRARNRITGLHDENGIWSIEDDDIQNIAV 174
Query: 795 NYFEGIFKSSQPNNIEEVCQKIQNKLNQEMREHLEEEFTADEVAYALNQMHPLKAPGPDG 854
+YF+ +F ++ P +E ++Q + + + L + T EV AL +HP KAPGPDG
Sbjct: 175 SYFQNLFTTANPQVFDEALGEVQVLITDRINDLLTADATECEVRAALFMIHPEKAPGPDG 234
Query: 855 FPALFYQKYWKLVGGDVTSQVLEILNKGVDPASLNQTFICLIPKVKAPENPMEFRPISLC 914
ALF+QK W ++ D+ S V L +GV LN T ICLIPK + P E RPISLC
Sbjct: 235 MTALFFQKSWAIIKSDLLSLVNSFLQEGVFDKRLNTTNICLIPKTERPTRMTELRPISLC 294
Query: 915 NVIMKLVTKCIANRIKDVLGEVVGEQQSAFIPGRLITDNALTGFEVFHYMKKKRKGKKGY 974
NV K+++K + R+K VL ++ E QSAF+ GRLI+DN L E+FH ++ K +
Sbjct: 295 NVGYKVISKILCQRLKTVLPNLISETQSAFVDGRLISDNILIAQEMFHGLRTNSSCKDKF 354
Query: 975 MALKLDMSKAYDRIEWDFLKQVLTTMGFPSKITELISICVSSVSYSLLVNGEPSPPFSPQ 1034
MA+K DMSKAYD++EW+F++ +L MGF K I C+++V Y +L+NG+P P+
Sbjct: 355 MAIKTDMSKAYDQVEWNFIEALLRKMGFCEKWISWIMWCITTVQYKVLINGQPKGLIIPE 414
Query: 1035 RGLRQGDPLSPYLFILCVEAFSGLISNQIRLRNLHGIKVARGAPPINHLFFADDSLIFSR 1094
RGLRQGDPLSPYLFILC E I R + GIKVA +P ++HL FADDSL F +
Sbjct: 415 RGLRQGDPLSPYLFILCTEVLIANIRKAERQNLITGIKVATPSPAVSHLLFADDSLFFCK 474
Query: 1095 ATQEEASSLLDVIRQYEQASGQLVNMDKSEISFSRNVPQTSMDTIRNRMGVKAVIVHDKY 1154
A +E+ +L++++QYE SGQ +N KS I F V + I+ +G+ + Y
Sbjct: 475 ANKEQCGIILEILKQYESVSGQQINFSKSSIQFGHKVEDSIKADIKLILGIHNLGGMGSY 534
Query: 1155 LGLPTVIGHSKKAIFGKIQERVWRKLKGWKEKTLSKAGKEILIKAVAQAIPSYVMSCFKL 1214
LGLP +G SK +F +++R+ ++ GW K LSK GKE++IK+VA +P YVMSCF+L
Sbjct: 535 LGLPESLGGSKTKVFSFVRDRLQSRINGWSAKFLSKGGKEVMIKSVAATLPRYVMSCFRL 594
Query: 1215 PNGICSKIESLLANFWWGQKENERKIHWAAWQHLCKTKNRGDLGFRNLEDFNRALLAKQA 1274
P I SK+ S +A FWW + R +HW AW LC +K+ G LGFRN++DFN ALLAKQ
Sbjct: 595 PKAITSKLTSAVAKFWWSSNGDSRGMHWMAWDKLCSSKSDGGLGFRNVDDFNSALLAKQL 654
Query: 1275 WRLLNSEKSLLYKVWKAKYFPKCDLLKAGVGYQPSYAWRSVWGTLKFIEEGCKWSIGNGK 1334
WRL+ + SL KV+K +YF K + L + Y PSY WRS+ + +G +G+G
Sbjct: 655 WRLITAPDSLFAKVFKGRYFRKSNPLDSIKSYSPSYGWRSMISARSLVYKGLIKRVGSGA 714
Query: 1335 KVSIWKDPWLPGPDSGYVRTQDVPEFAHEKVSDLRLWEGGSWNISKIDQLFNPAEAQLIK 1394
+S+W DPW+P + KV L WNI + +LF+P + LI
Sbjct: 715 SISVWNDPWIPAQFPRPAKYGGSIVDPSLKVKSLIDSRSNFWNIDLLKELFDPEDVPLIS 774
Query: 1395 SIRLSWRDSEDKLIWRWSRDGMFSVKSAYYQIQSQKIAATASGSNSPSFSWKTLWRVKIQ 1454
++ + + ED L W +++ G ++VKS Y+ + T + +W+V+
Sbjct: 775 ALPIGNPNMEDTLGWHFTKAGNYTVKSGYHTARLDLNEGTTLIGPDLTTLKAYIWKVQCP 834
Query: 1455 NKVKHFMYRVINNLTPCRANLARRGIQIQEQCALCSQDVVETQDHLFLQCSWARAAWFHH 1514
K++HF++++++ P NL +RGI + C C E+ +H QC AR W
Sbjct: 835 PKLRHFLWQILSGCVPVSENLRKRGILCDKGCVSCGAS-EESINHTLFQCHPARQIW--- 890
Query: 1515 SLGLRMDLVQTSFLEWLQSFCANQEDEIVAQVFHGT---------WAIWKARNESLFNNV 1565
+ + T+ + + D + ++ G W IWKARNE +F NV
Sbjct: 891 ----ALSQIPTAPGIFPSNSIFTNLDHLFWRIPSGVDSAPYPWIIWYIWKARNEKVFENV 946
Query: 1566 QVHPATAMEKAQNLLAEWKEAQ-----EHHAPCVQEKRPQQWSAPSQ---GRIKINVDAG 1617
P + A W+EAQ E H + R + + +D
Sbjct: 947 DKDPMEILLLAVKEAQSWQEAQVELHSERHGSLSIDSRIRVRDVSQDTTFSGFRCFIDGS 1006
Query: 1618 W-SGPHSTGLGFVARDHRGIIMLAGTCLEAQRLDPLIAEAMALRWSLHTALEVSLDSVIF 1676
W + +G G+ G G + L PL E AL W++ + +V F
Sbjct: 1007 WKASDQFSGTGWFCLSSLGESPTMGAANVRRSLSPLHTEMEALLWAMKCMIGADNQNVAF 1066
Query: 1677 KLDSISVVKAMRTNSSLWTIQNLM*DCIYLASL------FTSISFNHVSRNANVPAHTLA 1730
D +VK M ++ + W + +YL L FT+ S + +SR+ANV A LA
Sbjct: 1067 FTDCSDLVK-MVSSPTEWPAFS-----VYLEELQSDREEFTNFSLSLISRSANVKADKLA 1120
>pir||S65812 RNA-directed DNA polymerase (EC 2.7.7.49) (clone DW15) - Arabidopsis
thaliana retrotransposon Ta11-1 gi|976278|gb|AAA75254.1|
reverse transcriptase
Length = 1333
Score = 666 bits (1719), Expect = 0.0
Identities = 405/1309 (30%), Positives = 655/1309 (49%), Gaps = 48/1309 (3%)
Query: 397 MKTISWNCRGVGSPR--TVKVLQRIIKAEDPDIVFLMETHKKNGELKNIVARLGFKNHLG 454
M +SWNC+G+G + T+ L + + P+++FLMET + + ++ LG++
Sbjct: 1 MSLVSWNCQGLGWSQDLTIPRLMEMRLSHFPEVLFLMETKNCSNVVVDLQEWLGYERVFT 60
Query: 455 VECRGEGRSSGGGLALLWKEDFNIDIISYSLHHITASHTNADQITCFLTGFYGYPESQNK 514
V G GGLAL WK+ +I +I Y+ ++ +++ YG P +K
Sbjct: 61 VNPIG----LSGGLALFWKKGVDI-VIKYADKNLIDFQIQFGSHEFYVSCVYGNPAFSDK 115
Query: 515 IKSWDLLVRLKGETSGPWMCFGDFNEITSNAEKKGGIDRPIEHMKKFVRCLNQCGLEDMG 574
W+ + R+ PW GDFN I N EK+GG R F L+ C + ++
Sbjct: 116 HLVWEKITRIGINRKEPWCMLGDFNPILHNGEKRGGPRRGDSSFLPFTDMLDSCDMLELP 175
Query: 575 FQGDPFTWCNGRKDEAHIQERLDRGVISQSFKEIWPASSVQHLLRYNSDHAPLLITVTSQ 634
G+PFTW G+ +E IQ RLDR ++++ +P S+ + L + SDH P+L+ +T
Sbjct: 176 SIGNPFTW-GGKTNEMWIQSRLDRCFGNKNWFRFFPISNQEFLDKRGSDHRPVLVRLTKT 234
Query: 635 PIEEGKKKKKKLFRFEQHLTLNHELAFHLRQAWQSGGDNAE----QKLAQAKETIMALET 690
K++ + FRF++ L + + QAW N KL + + +
Sbjct: 235 -----KEEYRGNFRFDKRLFNQPNVKETIVQAWNGSQRNENLLVLDKLKHCRSALSRWKK 289
Query: 691 EFGSIRKKLHDLEQRLKAAQKWNPTEENIMRRKEMENEFAELMGREELYWRQRSRATWLK 750
E +I + R + + ++N+ + EE++W Q+SRA W+
Sbjct: 290 E-NNINSSTRITQARAALELEQSSGFPRADLVFSLKNDLCKANHDEEVFWSQKSRAKWMH 348
Query: 751 EGDKNTSFFHGKANQRQKQNRIARIRDDHGNWVYKQDQVTTAFSNYFEGIFKSSQPNNIE 810
GDKNTSFFH + + I ++ D +G + + YF +FKS+ P++
Sbjct: 349 SGDKNTSFFHASVKDNRGKQHIDQLCDVNGLFHKDEMNKGAIAEAYFSDLFKSTDPSSFV 408
Query: 811 EVCQKIQNKLNQEMREHLEEEFTADEVAYALNQMHPLKAPGPDGFPALFYQKYWKLVGGD 870
++ + Q ++ + M L + +E+ A+ + APG DGF F+QKYW ++
Sbjct: 409 DLFEDYQPRVTESMNNTLIAAVSKNEIREAVFAIRSSSAPGVDGFTGFFFQKYWSIICLQ 468
Query: 871 VTSQVLEILNKGVDPASLNQTFICLIPKVKAPENPMEFRPISLCNVIMKLVTKCIANRIK 930
VT ++ G P S N T +CL+PK K P+ + RPISLC+V+ K+++K + R++
Sbjct: 469 VTKEIQNFFLLGYFPKSWNFTHLCLLPKKKKPDKMTDLRPISLCSVLYKIISKIMVRRLQ 528
Query: 931 DVLGEVVGEQQSAFIPGRLITDNALTGFEVFHYMKKKRKGKKGYMALKLDMSKAYDRIEW 990
L ++V QSAF+ RLI DN L EV H ++ + KG++A+K +MSKA+DR+EW
Sbjct: 529 PFLPDLVSPNQSAFVAERLIFDNILIAHEVVHGLRTHKSVSKGFIAIKSNMSKAFDRVEW 588
Query: 991 DFLKQVLTTMGFPSKITELISICVSSVSYSLLVNGEPSPPFSPQRGLRQGDPLSPYLFIL 1050
++++ +L +GF K I +SSVSYS+L+N + P RGLRQGDPLSP+LF+L
Sbjct: 589 NYVRALLDALGFHQKWVGWIMFMISSVSYSVLINDKAFGNIVPSRGLRQGDPLSPFLFVL 648
Query: 1051 CVEAFSGLISNQIRLRNLHGIKVARGAPPINHLFFADDSLIFSRATQEEASSLLDVIRQY 1110
C E + L++ R L GI+ + P I+HL FADDSL +A +EE + + + + Y
Sbjct: 649 CSEGLTHLMNRAERQGLLSGIRFSENGPAIHHLLFADDSLFMCKAVKEEVTVIKSIFKVY 708
Query: 1111 EQASGQLVNMDKSEISFSRNVPQTSMDTIRNRMGVKAVIVHDKYLGLPTVIGHSKKAIFG 1170
+GQ +N DKS I+ V + I+ +G+ YLGLP SK +
Sbjct: 709 GDVTGQRINYDKSSITLGALVDEDCKVWIQAELGITNEGGASTYLGLPECFSGSKVQLLD 768
Query: 1171 KIQERVWRKLKGWKEKTLSKAGKEILIKAVAQAIPSYVMSCFKLPNGICSKIESLLANFW 1230
I++R+ +L GW +TLS GKE L+KA A A+ Y MSCFKL C + S +++FW
Sbjct: 769 YIKDRLKTRLSGWFARTLSMGGKETLLKAFALALLFYAMSCFKLTKTTCVNMTSAMSDFW 828
Query: 1231 WGQKENERKIHWAAWQHLCKTKNRGDLGFRNLEDFNRALLAKQAWRLLNSEKSLLYKVWK 1290
W E++RK HW + + +C +K G LGFR++E FN+ALLAKQAWRLL SL + +K
Sbjct: 829 WNALEHKRKTHWVSCEKMCLSKENGGLGFRDIESFNQALLAKQAWRLLQFPNSLFARFFK 888
Query: 1291 AKYFPKCDLLKAGVGYQPSYAWRSVWGTLKFIEEGCKWSIGNGKKVSIWKDPWLPGPDSG 1350
++Y+ + D L A + PSYAWRS+ + +G + +GNG S+W DPW+ D
Sbjct: 889 SRYYDEEDFLDAELKATPSYAWRSILHGRDLLIKGFRKKVGNGSSTSVWMDPWIYDNDPR 948
Query: 1351 YVRTQDVPEFAHEKVSDLRLWEGGSWNISKIDQLFNPAEAQLIKSIRLSWRDSEDKLIWR 1410
+ +V DL E ++++LF PA+ ++I R +D +W
Sbjct: 949 LPLQKHFSVNLDLRVHDLINVEDRCRRRDRLEELFYPADIEIIVK-RNPVVSMDDFWVWL 1007
Query: 1411 WSRDGMFSVKSAY---YQIQSQKIAATASGSNSPSFSWKTLWRVKIQNKVKHFMYRVINN 1467
S+ G +SVKS Y +Q ++ A S + + +W K+K F++R++++
Sbjct: 1008 HSKSGEYSVKSGYWLAFQTNKPELIREARVQPSTNGLKEKIWSTLTSPKIKLFLWRILSS 1067
Query: 1468 LTPCRANLARRGIQIQEQCALCSQDVVETQDHLFLQCSWARAAWFHHSLGL-RMDLVQTS 1526
P + RRG+ I +C +C ++ E+ +H+ CS AR W + + +S
Sbjct: 1068 ALPVAYQIIRRGMPIDPRCQVCGEE-GESINHVLFTCSLARQVWALSGVPTSQFGFQNSS 1126
Query: 1527 FLEWLQSFCANQEDEIVAQVFHGT-----WAIWKARNESLFNNVQVHPATAMEKAQNLLA 1581
+Q + ++ + + W +WK R++ F P ++EK ++ +
Sbjct: 1127 IFANIQYLLELKGKGLIPEQIKKSWPWVLWRLWKNRDKLFFEGTIFSPLKSIEKIRDDVQ 1186
Query: 1582 EWKEAQE-----------HHAPCVQEKRPQQWSAPSQGRIKINVDAGWSGPHST-GLGFV 1629
EW AQ APC P W P G +K N+ WSG G +V
Sbjct: 1187 EWFLAQALVASVDAGETVCSAPC-----PSSWEPPPLGWVKCNISGVWSGKKRVCGGAWV 1241
Query: 1630 ARDHRGIIMLAGTCLEAQRLDPLIAEAMALRWSLHTALEVSLDSVIFKL 1678
RD G ++L + A ++W+L L + DS+ F L
Sbjct: 1242 LRDDHGKVLLHSRRAFSNLSVKKDALFCCVKWALRVCL--ATDSLRFCL 1288
>emb|CAB78094.1| RNA-directed DNA polymerase-like protein [Arabidopsis thaliana]
gi|4538901|emb|CAB39638.1| RNA-directed DNA
polymerase-like protein [Arabidopsis thaliana]
gi|7485606|pir||T04018 hypothetical protein F17A8.60 -
Arabidopsis thaliana
Length = 1274
Score = 655 bits (1691), Expect = 0.0
Identities = 416/1339 (31%), Positives = 653/1339 (48%), Gaps = 109/1339 (8%)
Query: 431 METHKKNGELKNIVARLGFKNHLGVECRGEGRSSGGGLALLWKEDFNIDIISYSLHHITA 490
MET ++ + +G+ + + G GGLAL WKE+ ++I+ + + I
Sbjct: 1 METKNQDEFISKTFDWMGYAHRFTIPPEG----LSGGLALYWKENVEVEILEAAPNFI-- 54
Query: 491 SHTNADQITCFLTGFYGYPESQNKIKSWDLLVRLKGETSGPWMCFGDFNEITSNAEKKGG 550
N+ WD + L + S W+ GDFN+I N+EK+GG
Sbjct: 55 ---------------------DNRSVFWDKISSLGAQRSSAWLLTGDFNDILDNSEKQGG 93
Query: 551 IDRPIEHMKKFVRCLNQCGLEDMGFQGDPFTWCNGRKDEAHIQERLDRGVISQSFKEIWP 610
R F ++Q GL D+ G+ +W G + I+ RLDR + + S+ E++P
Sbjct: 94 PLRWEGFFLAFRSFVSQNGLWDINHTGNSLSW-RGTRYSHFIKSRLDRALGNCSWSELFP 152
Query: 611 ASSVQHLLRYNSDHAPLLITVTSQPIEEGKKKKKKLFRFEQHLTLNHELAFHLRQAWQ-S 669
S ++L SDH PL+ + P+ K+ K FRF++ L E+ +++ W+ +
Sbjct: 153 MSKCEYLRFEGSDHRPLVTYFGAPPL-----KRSKPFRFDRRLREKEEIRALVKEVWELA 207
Query: 670 GGDNAEQKLAQAKETIMALETEFGS-IRKKLHDLEQRLKAAQKWNPTEENIMRRKEMENE 728
D+ K+++ +++I+ E S K + +Q L++A + + +++ E E
Sbjct: 208 RQDSVLYKISRCRQSIIKWTKEQNSNSAKAIKKAQQALESALSADIPDPSLIGSITQELE 267
Query: 729 FAELMGREELYWRQRSRATWLKEGDKNTSFFHGKANQRQKQNRIARIRDDHGNWVYKQDQ 788
A +EEL+W+Q SR WL GD+N +FH R+ N ++ I D G ++++Q
Sbjct: 268 AA--YRQEELFWKQWSRVQWLNSGDRNKGYFHATTRTRRMLNNLSVIEDGSGQEFHEEEQ 325
Query: 789 VTTAFSNYFEGIFKSSQPNNIEEVCQKIQNKLNQEMREHLEEEFTADEVAYALNQMHPLK 848
+ + S+YF+ IF +S ++++ V + + ++ E L + + E+ AL + K
Sbjct: 326 IASTISSYFQNIFTTSNNSDLQVVQEALSPIISSHCNEELIKISSLLEIKEALFSISADK 385
Query: 849 APGPDGFPALFYQKYWKLVGGDVTSQVLEILNKGVDPASLNQTFICLIPKVKAPENPMEF 908
APGPDGF A F+ YW ++ DV+ + LN+T + LIPK+ AP ++
Sbjct: 386 APGPDGFSASFFHAYWDIIEADVSRDIRSFFVDSCLSPRLNETHVTLIPKISAPRKVSDY 445
Query: 909 RPISLCNVIMKLVTKCIANRIKDVLGEVVGEQQSAFIPGRLITDNALTGFEVFHYMKKKR 968
RPI+LCNV K+V K + R++ L E++ QSAF+PGR I DN L E+ H+++
Sbjct: 446 RPIALCNVQYKIVAKILTRRLQPWLSELISLHQSAFVPGRAIADNVLITHEILHFLRVSG 505
Query: 969 KGKKGYMALKLDMSKAYDRIEWDFLKQVLTTMGFPSKITELISICVSSVSYSLLVNGEPS 1028
K MA+K DMSKAYDRI+W+FL++VL +GF K + CV +VSYS L+NG P
Sbjct: 506 AKKYCSMAIKTDMSKAYDRIKWNFLQEVLMRLGFHDKWIRWVMQCVCTVSYSFLINGSPQ 565
Query: 1029 PPFSPQRGLRQGDPLSPYLFILCVEAFSGLISNQIRLRNLHGIKVARGAPPINHLFFADD 1088
P RGLRQGDPLSPYLFILC E SGL + GI+VARG+P +NHL FADD
Sbjct: 566 GSVVPSRGLRQGDPLSPYLFILCTEVLSGLCRKAQEKGVMVGIRVARGSPQVNHLLFADD 625
Query: 1089 SLIFSRATQEEASSLLDVIRQYEQASGQLVNMDKSEISFSRNVPQTSMDTIRNRMGVKAV 1148
++ F + +L +++++YE ASGQ +N+ KS I+FS PQ ++ + +
Sbjct: 626 TMFFCKTNPTCCGALSNILKKYELASGQSINLAKSAITFSSKTPQDIKRRVKLSLRIDNE 685
Query: 1149 IVHDKYLGLPTVIGHSKKAIFGKIQERVWRKLKGWKEKTLSKAGKEILIKAVAQAIPSYV 1208
KYLGLP G K+ IF I +R+ ++ W + LS AGK+IL+KAV ++PSY
Sbjct: 686 GGIGKYLGLPEHFGRRKRDIFSSIVDRIRQRSHSWSIRFLSSAGKQILLKAVLSSMPSYA 745
Query: 1209 MSCFKLPNGICSKIESLLANFWWGQKENERKIHWAAWQHLCKTKNRGDLGFRNLEDFNRA 1268
M CFKLP +C +I+S+L FWW K ++RK+ W +W L N G LGFR +E
Sbjct: 746 MMCFKLPASLCKQIQSVLTRFWWDSKPDKRKMAWVSWDKLTLPINEGGLGFREIE----- 800
Query: 1269 LLAKQAWRLLNSEKSLLYKVWKAKYFPKCDLLKAGVGYQPSYA---WRSVWGTLKFIEEG 1325
AK +WR+L SLL +V KY + PS+A WR + + +G
Sbjct: 801 --AKLSWRILKEPHSLLSRVLLGKYCNTSSFMDCSA--SPSFASHGWRGILAGRDLLRKG 856
Query: 1326 CKWSIGNGKKVSIWKDPWLPGPDSGYVRTQDVPEFAHE-KVSDLRLWEGGSWNISKIDQL 1384
WSIG G +++W + WL P S E + V DL + SWN+ I +
Sbjct: 857 LGWSIGQGDSINVWTEAWL-SPSSPQTPIGPPTETNKDLSVHDLICHDVKSWNVEAIRKH 915
Query: 1385 FNPAEAQLIKSIRLSWRDSEDKLIWRWSRDGMFSVKSAYYQIQSQKIAATASGSNSPSFS 1444
E Q I+ I ++ +D L+W + G ++ K+ Y + A + F+
Sbjct: 916 LPQYEDQ-IRKITINALPLQDSLVWLPVKSGEYTTKTGYALAKLNSFPA-----SQLDFN 969
Query: 1445 W-KTLWRVKIQNKVKHFMYRVINNLTPCRANLARRGIQIQEQCALCSQDVVETQDHLFLQ 1503
W K +W++ KVKHF+++ + P L+RR I+ + C C Q E+ HL L
Sbjct: 970 WQKNIWKIHTSPKVKHFLWKAMKGALPVGEALSRRNIEAEVTCKRCGQ--TESSLHLMLL 1027
Query: 1504 CSWARAAW------------FHHSLGLRM------------DLVQTSFLEWLQSFCANQE 1539
C +A+ W H S+ L + L WL
Sbjct: 1028 CPYAKKVWELAPVLFNPSEATHSSVALLLVDAKRMVALPPTGLGSAPLYPWL-------- 1079
Query: 1540 DEIVAQVFHGTWAIWKARNESLFNNVQVHPATAMEKAQNLLAEWKEAQ---EHHAPCVQE 1596
W +WKARN +F+N + KA W EAQ H +P
Sbjct: 1080 ----------LWHLWKARNRLIFDNHSCSEEGLVLKAILDARAWMEAQLLIHHPSPISDY 1129
Query: 1597 KRPQQWSAPSQGRIKINVDAGWSGPHSTGLGFVARDHRGIIMLAGTCLEAQRLDPLIAEA 1656
P P+ VDA W+ G+G+ +D + + + L+AE
Sbjct: 1130 PSP----TPNLKVTSCFVDAAWTTSGYCGMGWFLQDPYKVKIKENQSSSSFVGSALMAET 1185
Query: 1657 MALRWSLHTALEVSLDSVIFKLDSISVVKAMRTNSSLWTIQNLM*DCIYLASLFTSISFN 1716
+A+ +L AL + + D ++ + + S+ ++ L+ D L+ FT + F
Sbjct: 1186 LAVHLALVDALSTGVRQLNVFSDCKELISLLNSGKSIVELRGLLHDIRELSVSFTHLCFF 1245
Query: 1717 HVSRNANVPAHTLASLACS 1735
+ R +NV A +LA A S
Sbjct: 1246 FIPRLSNVVADSLAKSALS 1264
>gb|AAX95232.1| retrotransposon protein, putative, unclassified [Oryza sativa
(japonica cultivar-group)] gi|62733010|gb|AAX95129.1|
retrotransposon protein, putative, unclassified [Oryza
sativa (japonica cultivar-group)]
Length = 1324
Score = 650 bits (1676), Expect = 0.0
Identities = 340/882 (38%), Positives = 519/882 (58%), Gaps = 17/882 (1%)
Query: 397 MKTISWNCRGVGSPRTVKVLQRIIKAEDPDIVFLMETHKKNGELKNIVARLGFKNHLGVE 456
MK I+WNCRG+G+ TV+ L + K +DPDI+FL T +L+ +LG N + +
Sbjct: 448 MKIIAWNCRGLGNGPTVRGLLNLQKEDDPDILFLSNTKMDTNKLQCFRWKLGMPNLVVKD 507
Query: 457 CRGEGRSSGGGLALLWKEDFNIDIISYSLHHITASHTNADQITCFLTGFYGYPESQNKIK 516
C+G+ GGLA+ WK++ N+ + + S + D TG YG P S K
Sbjct: 508 CQGKS----GGLAVFWKKEINLRLRTVSRLFMDVDVMEDDGFWWRFTGVYGEPRSDKKDL 563
Query: 517 SWDLLVRLKGETSGPWMCFGDFNEITSNAEKKGGIDRPIEHMKKFVRCLNQCGLEDMGFQ 576
+W L L W+C GDFNE+ + EK+ G + M +F + L+ C L ++GF
Sbjct: 564 TWKALRTLNATKGELWLCVGDFNEVLFSWEKERGHAKAQSCMDRFRQTLDCCSLSNLGFT 623
Query: 577 GDPFTWCNGR-KDEAHIQERLDRGVISQSFKEIWPASSVQHLLRYNSDHAPLLITVTSQP 635
GDPFTW N + +I+ERLDR V + +P+ V+ +SDH P+++T +++
Sbjct: 624 GDPFTWRNNWCVRDGYIRERLDRAVADSDWCCRFPSFRVRKGDPRHSDHHPVIVTTSNEV 683
Query: 636 IEEGKKKKKKLFRFEQHLTLNHELAFHLRQAWQ-SGGDNAEQKLAQAKETIMAL----ET 690
I G + K FRFE A + AW+ S G + + +E L +
Sbjct: 684 IWNGGRSKPG-FRFEAGWAREEHCAPIVENAWKLSVGPRGGKVMDAIREVAANLWDWSKN 742
Query: 691 EFGSIRKKLHDLEQRLKAAQKWNPTEENIMRRKEMENEFAELMGREELYWRQRSRATWLK 750
G + K++ +Q L+A ++ + R ++ +L + ELYWRQR+ WL+
Sbjct: 743 FLGDLEKRIKKAKQALEAHRRSPISSSTASREAVLKYRLDKLEEQRELYWRQRANQHWLE 802
Query: 751 EGDKNTSFFHGKANQRQKQNRIARIRDDHGNWVYKQDQVTTAFSNYFEGIFKSSQPNNIE 810
+GD+NT FFH A++R+K+N+I ++R D G + + + S +++ +F + P N++
Sbjct: 803 KGDRNTKFFHECASERKKRNKIKKLRRDDGEVITDEAGSLSLISEFYKQLFTAGVPLNLD 862
Query: 811 EVCQKIQNKLNQEMREHLEEEFTADEVAYALNQMHPLKAP-GPDGFPALFYQKYWKLVGG 869
E+ Q + ++ M + L + T +E+ AL+ + LKAP G DG PALFY+++W+ VG
Sbjct: 863 ELLQNVPKRVTSTMNDELMKGVTTEEIKKALDSIGDLKAPPGSDGMPALFYKQFWECVGD 922
Query: 870 DVTSQVLEILNKGVDPASLNQTFICLIPKVKAPENPMEFRPISLCNVIMKLVTKCIANRI 929
D+ +V + L G P S N T + LIPKV PE + RPISLCNV+ K+ +K +ANR+
Sbjct: 923 DIVHEVKDFLGGGEMPDSWNDTVVVLIPKVPNPERIKDLRPISLCNVVYKIASKVLANRL 982
Query: 930 KDVLGEVVGEQQSAFIPGRLITDNALTGFEVFHYMKKKRKGKKGYMALKLDMSKAYDRIE 989
K +L E++ Q AF+P R+ITDN L +E+ H++K KR+G G+ A+K MSKAYDR+E
Sbjct: 983 KPLLSEIISPIQIAFVPQRMITDNILLAYELTHFLKTKRRGSVGFAAVKQGMSKAYDRVE 1042
Query: 990 WDFLKQVLTTMGFPSKITELISICVSSVSYSLLVNGEPSPPFSPQRGLRQGDPLSPYLFI 1049
W FL++++ +GF ++ CV+SV+Y + VNGE + +P GLRQGDP+SPYLF
Sbjct: 1043 WGFLEKMMLKLGFDRNWVFIVMKCVTSVTYRIKVNGEFTEQINPTGGLRQGDPISPYLFF 1102
Query: 1050 LCVEAFSGLISNQIRLRNLHGIKVARGAPPINHLFFADDSLIFSRATQEEASSLLDVIRQ 1109
+C E FS L++ +L IKV + AP INHL FADDSL+ + + A+ L +V+
Sbjct: 1103 ICAEGFSTLLNAAEERGDLSVIKVCQNAPSINHLLFADDSLLLLKTDEGSAACLQNVLSL 1162
Query: 1110 YEQASGQLVNMDKSEISFSRNVPQTSMDTIRNRMGVKAVIVHDKYLGLPTVIGHSKKAIF 1169
YE+ SG+ +N +KS I FSRN+ + + + + ++KYLGLP +G SK
Sbjct: 1163 YERCSGETINKEKSSIMFSRNIKEVNKQIFMGALDIGVGAWNEKYLGLPVYMGRSKAKTS 1222
Query: 1170 GKIQERVWRKLKGWKEKTLSKAGKEILIKAVAQAIPSYVMSCFKLPNGICSKIESLLANF 1229
++ERVW+K++GWKEK LS+AGK++LIKAVAQAIP++ MSCF L G+C +I SL+ F
Sbjct: 1223 SYLKERVWKKIQGWKEKLLSRAGKDVLIKAVAQAIPAFAMSCFNLTKGLCDEITSLICRF 1282
Query: 1230 WWGQKENERKIHWAAWQHLCKTKNRGDLGFR-----NLEDFN 1266
+W Q+E E K+HW AW+HLC K +G FR +L +FN
Sbjct: 1283 FWAQQERENKMHWIAWEHLCSRKEKGGFFFRRTTAGDLPEFN 1324
>pir||G86379 protein F5A9.24 [imported] - Arabidopsis thaliana
gi|9945082|gb|AAG03119.1| F5A9.24 [Arabidopsis thaliana]
Length = 1254
Score = 648 bits (1672), Expect = 0.0
Identities = 370/1068 (34%), Positives = 582/1068 (53%), Gaps = 38/1068 (3%)
Query: 431 METHKKNGELKNIVARLGFKNHLGVECRGEGRSSGGGLALLWKEDFNIDIISYSLHHITA 490
MET +L +I + L + VE G+ GGLALLWK +D+ + ++
Sbjct: 1 METMHSRDDLVDIQSWLEYDQVYTVEPVGKC----GGLALLWKSSVQVDL-KFVDKNLMD 55
Query: 491 SHTNADQITCFLTGFYGYPESQNKIKSWDLLVRLKGETSGPWMCFGDFNEITSNAEKKGG 550
+ + ++ YG P+ + ++W+ + R+ W FGDFN+I N EK GG
Sbjct: 56 AQVQFGAVNFCVSCVYGDPDRSKRSQAWERISRIGVGRRDKWCMFGDFNDILHNGEKNGG 115
Query: 551 IDRPIEHMKKFVRCLNQCGLEDMGFQGDPFTWCNGRKDEAHIQERLDRGVISQSFKEIWP 610
R K F + C L +M G+ FTW GR+ + IQ RLDR ++ + +P
Sbjct: 116 PRRSDLDCKAFNEMIKGCDLVEMPAHGNGFTWA-GRRGDHWIQCRLDRAFGNKEWFCFFP 174
Query: 611 ASSVQHLLRYNSDHAPLLITVTSQPIEEGKKKKKKLFRFEQHLTLNHELAFHLRQAWQSG 670
S+ L SDH P+LI + S + + FRF++ ++ + + W G
Sbjct: 175 VSNQTFLDFRGSDHRPVLIKLMSS-----QDSYRGQFRFDKRFLFKEDVKEAIIRTWSRG 229
Query: 671 GDNAEQKLAQAKETIMALETEFGSIRK--------KLHDLEQRLKAAQK--WNPTEENIM 720
+A + + A S +K K++ LE L+ Q W + +
Sbjct: 230 KHGTNISVA---DRLRACRKSLSSWKKQNNLNSLDKINQLEAALEKEQSLVWPIFQRVSV 286
Query: 721 RRKEMENEFAELMGREELYWRQRSRATWLKEGDKNTSFFHGKANQRQKQNRIARIRDDHG 780
+K++ + E EE YW+Q+SR WL+ G++N+ +FH Q +++ RI +++D +G
Sbjct: 287 LKKDLAKAYRE----EEAYWKQKSRQKWLRSGNRNSKYFHAAVKQNRQRKRIEKLKDVNG 342
Query: 781 NWVYKQDQVTTAFSNYFEGIFKSSQPNNIEEVCQKIQNKLNQEMREHLEEEFTADEVAYA 840
N + + YF +FKSS P+ + + ++++ M E L E +A E+ A
Sbjct: 343 NMQTSEAAKGEVAAAYFGNLFKSSNPSGFTDWFSGLVPRVSEVMNESLVGEVSAQEIKEA 402
Query: 841 LNQMHPLKAPGPDGFPALFYQKYWKLVGGDVTSQVLEILNKGVDPASLNQTFICLIPKVK 900
+ + P APGPDG ALF+Q YW VG VTS+V + G+ PA N T +CLIPK +
Sbjct: 403 VFSIKPASAPGPDGMSALFFQHYWSTVGNQVTSEVKKFFADGIMPAEWNYTHLCLIPKTQ 462
Query: 901 APENPMEFRPISLCNVIMKLVTKCIANRIKDVLGEVVGEQQSAFIPGRLITDNALTGFEV 960
P ++ RPISLC+V+ K+++K +A R++ L E+V + QSAF+ RLITDN L E+
Sbjct: 463 HPTEMVDLRPISLCSVLYKIISKIMAKRLQPWLPEIVSDTQSAFVSERLITDNILVAHEL 522
Query: 961 FHYMKKKRKGKKGYMALKLDMSKAYDRIEWDFLKQVLTTMGFPSKITELISICVSSVSYS 1020
H +K + +MA+K DMSKAYDR+EW +L+ +L ++GF K I +CVSSV+YS
Sbjct: 523 VHSLKVHPRISSEFMAVKSDMSKAYDRVEWSYLRSLLLSLGFHLKWVNWIMVCVSSVTYS 582
Query: 1021 LLVNGEPSPPFSPQRGLRQGDPLSPYLFILCVEAFSGLISNQIRLRNLHGIKVARGAPPI 1080
+L+N P QRGLRQGDPLSP+LF+LC E + L++ L GI+ + P +
Sbjct: 583 VLINDCPFGLIILQRGLRQGDPLSPFLFVLCTEGLTHLLNKAQWEGALEGIQFSENGPMV 642
Query: 1081 NHLFFADDSLIFSRATQEEASSLLDVIRQYEQASGQLVNMDKSEISFSRNVPQTSMDTIR 1140
+HL FADDSL +A++E++ L +++ Y A+GQ +N++KS I+F V + TIR
Sbjct: 643 HHLLFADDSLFLCKASREQSLVLQKILKVYGNATGQTINLNKSSITFGEKVDEQLKGTIR 702
Query: 1141 NRMGVKAVIVHDKYLGLPTVIGHSKKAIFGKIQERVWRKLKGWKEKTLSKAGKEILIKAV 1200
+G+ YLGLP SK + +++R+ KL W + LS+ GKE+L+K+V
Sbjct: 703 TCLGIFTEGGAGTYLGLPECFSGSKVDMLHYLKDRLKEKLDVWFTRCLSQGGKEVLLKSV 762
Query: 1201 AQAIPSYVMSCFKLPNGICSKIESLLANFWWGQKENERKIHWAAWQHLCKTKNRGDLGFR 1260
A A+P + MSCFKLP C +ES +A+FWW ++ RKIHW +W+ LC K+ G LGFR
Sbjct: 763 ALAMPVFAMSCFKLPITTCENLESAMASFWWDSCDHSRKIHWQSWERLCLPKDSGGLGFR 822
Query: 1261 NLEDFNRALLAKQAWRLLNSEKSLLYKVWKAKYFPKCDLLKAGVGYQPSYAWRSVWGTLK 1320
+++ FN+ALLAKQAWRLL+ LL ++ K++YF D L A + +PS+ WRS+ +
Sbjct: 823 DIQSFNQALLAKQAWRLLHFPDCLLSRLLKSRYFDATDFLDAALSQRPSFGWRSILFGRE 882
Query: 1321 FIEEGCKWSIGNGKKVSIWKDPWLPGPDSGYVRTQDVPEFAHE---KVSDLRLWEGGSWN 1377
+ +G + +G+G + +W DPW+ D+G+ R ++ KV L G W+
Sbjct: 883 LLSKGLQKRVGDGASLFVWIDPWI--DDNGF-RAPWRKNLIYDVTLKVKALLNPRTGFWD 939
Query: 1378 ISKIDQLFNPAEAQLIKSIRLSWRDSEDKLIWRWSRDGMFSVKSAY---YQIQSQKIAAT 1434
+ LF P + IK+I+ D +W+ ++ G FSVKSAY YQ +SQ + +
Sbjct: 940 EEVLHDLFLPEDILRIKAIK-PVISQADFFVWKLNKSGDFSVKSAYWLAYQTKSQNLRSE 998
Query: 1435 ASGSNSPSFSWKTLWRVKIQNKVKHFMYRVINNLTPCRANLARRGIQI 1482
S S +W ++ K+K F+++V++ + P NL RG+ +
Sbjct: 999 VSMQPSTLGLKTQVWNLQTDPKIKIFLWKVLSGILPVAENLNGRGMSL 1046
>gb|AAF97969.1| F21J9.30 [Arabidopsis thaliana]
Length = 1270
Score = 648 bits (1672), Expect = 0.0
Identities = 396/1244 (31%), Positives = 630/1244 (49%), Gaps = 76/1244 (6%)
Query: 466 GGLALLWKEDFNIDIISYSLHHITASHTNADQITCFLTGFYGYPESQNKIKSWDLLVRLK 525
GGLALLWK +D+ + ++ + + ++ YG P+ + ++W+ + R+
Sbjct: 29 GGLALLWKSSVQVDL-KFVDKNLMDAQVQFGAVNFCVSCVYGDPDRSKRSQAWERISRIG 87
Query: 526 GETSGPWMCFGDFNEITSNAEKKGGIDRPIEHMKKFVRCLNQCGLEDMGFQGDPFTWCNG 585
W FGDFN+I N EK GG R K F + C L +M G+ FTW G
Sbjct: 88 VGRRDKWCMFGDFNDILHNGEKNGGPRRSDLDCKAFNEMIKGCDLVEMPAHGNGFTWA-G 146
Query: 586 RKDEAHIQERLDRGVISQSFKEIWPASSVQHLLRYNSDHAPLLITVTSQPIEEGKKKKKK 645
R+ + IQ RLDR ++ + +P S+ L SDH P+LI + S + +
Sbjct: 147 RRGDHWIQCRLDRAFGNKEWFCFFPVSNQTFLDFRGSDHRPVLIKLMSS-----QDSYRG 201
Query: 646 LFRFEQHLTLNHELAFHLRQAWQSGGDNAEQKLAQAKETIMALETEFGSIRK-------- 697
FRF++ ++ + + W G +A + + A S +K
Sbjct: 202 QFRFDKRFLFKEDVKEAIIRTWSRGKHGTNISVA---DRLRACRKSLSSWKKQNNLNSLD 258
Query: 698 KLHDLEQRLKAAQK--WNPTEENIMRRKEMENEFAELMGREELYWRQRSRATWLKEGDKN 755
K++ LE L+ Q W + + +K++ + E EE YW+Q+SR WL+ G++N
Sbjct: 259 KINQLEAALEKEQSLVWPIFQRVSVLKKDLAKAYRE----EEAYWKQKSRQKWLRSGNRN 314
Query: 756 TSFFHGKANQRQKQNRIARIRDDHGNWVYKQDQVTTAFSNYFEGIFKSSQPNNIEEVCQK 815
+ +FH Q +++ RI +++D +GN + + YF +FKSS P+ +
Sbjct: 315 SKYFHAAVKQNRQRKRIEKLKDVNGNMQTSEAAKGEVAAAYFGNLFKSSNPSGFTDWFSG 374
Query: 816 IQNKLNQEMREHLEEEFTADEVAYALNQMHPLKAPGPDGFPALFYQKYWKLVGGDVTSQV 875
+ ++++ M E L E +A E+ A+ + P APGPDG ALF+Q YW VG VTS+V
Sbjct: 375 LVPRVSEVMNESLVGEVSAQEIKEAVFSIKPASAPGPDGMSALFFQHYWSTVGNQVTSEV 434
Query: 876 LEILNKGVDPASLNQTFICLIPKVKAPENPMEFRPISLCNVIMKLVTKCIANRIKDVLGE 935
+ G+ PA N T +CLIPK + P ++ RPISLC+V+ K+++K +A R++ L E
Sbjct: 435 KKFFADGIMPAEWNYTHLCLIPKTQHPTEMVDLRPISLCSVLYKIISKIMAKRLQPWLPE 494
Query: 936 VVGEQQSAFIPGRLITDNALTGFEVFHYMKKKRKGKKGYMALKLDMSKAYDRIEWDFLKQ 995
+V + QSAF+ RLITDN L E+ H +K + +MA+K DMSKAYDR+EW +L+
Sbjct: 495 IVSDTQSAFVSERLITDNILVAHELVHSLKVHPRISSEFMAVKSDMSKAYDRVEWSYLRS 554
Query: 996 VLTTMGFPSKITELISICVSSVSYSLLVNGEPSPPFSPQRGLRQGDPLSPYLFILCVEAF 1055
+L ++GF K I +CVSSV+YS+L+N P QRGLRQGDPLSP+LF+LC E
Sbjct: 555 LLLSLGFHLKWVNWIMVCVSSVTYSVLINDCPFGLIILQRGLRQGDPLSPFLFVLCTEGL 614
Query: 1056 SGLISNQIRLRNLHGIKVARGAPPINHLFFADDSLIFSRATQEEASSLLDVIRQYEQASG 1115
+ L++ L GI+ + P ++HL FADDSL +A++E++ L +++ Y A+G
Sbjct: 615 THLLNKAQWEGALEGIQFSENGPMVHHLLFADDSLFLCKASREQSLVLQKILKVYGNATG 674
Query: 1116 QLVNMDKSEISFSRNVPQTSMDTIRNRMGVKAVIVHDKYLGLPTVIGHSKKAIFGKIQER 1175
Q +N++KS I+F V + TIR +G+ YLGLP SK + +++R
Sbjct: 675 QTINLNKSSITFGEKVDEQLKGTIRTCLGIFTEGGAGTYLGLPECFSGSKVDMLHYLKDR 734
Query: 1176 VWRKLKGWKEKTLSKAGKEILIKAVAQAIPSYVMSCFKLPNGICSKIESLLANFWWGQKE 1235
+ KL W + LS+ GKE+L+K+VA A+P + MSCFKLP C +ES +A+FWW +
Sbjct: 735 LKEKLDVWFTRCLSQGGKEVLLKSVALAMPVFAMSCFKLPITTCENLESAMASFWWDSCD 794
Query: 1236 NERKIHWAAWQHLCKTKNRGDLGFRNLEDFNRALLAKQAWRLLNSEKSLLYKVWKAKYFP 1295
+ RKIHW +W+ LC K+ G LGFR+++ FN+ALLAKQAWRLL+ LL ++ K++YF
Sbjct: 795 HSRKIHWQSWERLCLPKDSGGLGFRDIQSFNQALLAKQAWRLLHFPDCLLSRLLKSRYFD 854
Query: 1296 KCDLLKAGVGYQPSYAWRSVWGTLKFIEEGCKWSIGNGKKVSIWKDPWLPGPDSGYVRTQ 1355
D L A + +PS+ WRS+ + + +G + +G+G + +W DPW+ D+G+ R
Sbjct: 855 ATDFLDAALSQRPSFGWRSILFGRELLSKGLQKRVGDGASLFVWIDPWI--DDNGF-RAP 911
Query: 1356 DVPEFAHE---KVSDLRLWEGGSWNISKIDQLFNPAEAQLIKSIRLSWRDSEDKLIWRWS 1412
++ KV L G W+ + LF P + IK+I+ D +W+ +
Sbjct: 912 WRKNLIYDVTLKVKALLNPRTGFWDEEVLHDLFLPEDILRIKAIK-PVISQADFFVWKLN 970
Query: 1413 RDGMFSVKSAY---YQIQSQKIAATASGSNSPSFSWKTLWRVKIQNKVKHFMYRVINNLT 1469
+ G FSVKSAY YQ +SQ + + S S +W ++ K+K F+++V L
Sbjct: 971 KSGDFSVKSAYWLAYQTKSQNLRSEVSMQPSTLGLKTQVWNLQTDPKIKIFLWKVCGELG 1030
Query: 1470 PCRANLARRGIQIQEQCALCSQDVVETQDHLFLQCSWARAAWFHHSLGLRMD-LVQTSFL 1528
E+ +H C +R W D S
Sbjct: 1031 -------------------------ESTNHTLFLCPLSRQIWALSDYPFPPDGFSNGSIY 1065
Query: 1529 EWLQSFCANQEDE----IVAQVFHG-TWAIWKARNESLFNNVQVHPATAMEKAQNLLAEW 1583
+ N++++ + ++F W IWK RN +F + + K ++ + EW
Sbjct: 1066 SNINHLLENKDNKEWPINLRKIFPWILWRIWKNRNSFIFEGISYPATDTVIKIRDDVVEW 1125
Query: 1584 KEAQEHHAPCVQEKRPQQWSAPSQGRIKINVDAGWSGPHSTGLGFVARDHRGIIMLAGTC 1643
EAQ P G + N+ W P + + GI++L
Sbjct: 1126 FEAQCLDGEGSALNPPLSNGVHFVGSVSENL---WIKPPA--------NWDGIVLLHSRR 1174
Query: 1644 LEAQRLDPLIAEAMALRWSLHTALEVSLDSVIFKLDSISVVKAM 1687
A A L W++ + +D++IF S++ A+
Sbjct: 1175 SFAPISSKADALLRCLLWAMESMASHKIDNIIFAFQDKSLIGAV 1218
>gb|AAD24601.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
thaliana] gi|25411729|pir||H84542 hypothetical protein
At2g16680 [imported] - Arabidopsis thaliana
Length = 1319
Score = 632 bits (1629), Expect = e-179
Identities = 384/1240 (30%), Positives = 620/1240 (49%), Gaps = 45/1240 (3%)
Query: 466 GGLALLWKEDFNIDIISYSLHHITASHTNADQITCFLTGFYGYPESQNKIKSWDLLVRLK 525
GGLA+ WK ID + + ++ + + + F++ YG P + D L +
Sbjct: 29 GGLAIFWKNHLEIDFL-FEDKNLLDLKVSQGKKSWFVSCVYGNPVLHLRYLLLDKLSSIG 87
Query: 526 GETSGPWMCFGDFNEITSNAEKKGGIDRPIEHMKKFVRCLNQCGLEDMGFQGDPFTWCNG 585
+ + W GDFN+I SN K GG R I + F L C + MG G+ FTW G
Sbjct: 88 VQRNSAWCMIGDFNDILSNDGKLGGPSRLISSFQPFKNMLLNCDMHQMGSSGNSFTW-GG 146
Query: 586 RKDEAHIQERLDRGVISQSFKEIWPASSVQHLLRYNSDHAPLLIT-VTSQPIEEGKKKKK 644
+++ IQ +LDR + + ++ S L + S H P+L+ V Q + G+
Sbjct: 147 TRNDQWIQCKLDRCFGNSEWFTMFSNSHQWFLEKLGSHHRPVLVNFVNDQEVFRGQ---- 202
Query: 645 KLFRFEQHLTLNHELAFHLRQAWQSGG----DNAEQKLAQAKETIMALE--TEFGSIRKK 698
F +++ + + A +W G ++ ++ + ++ I + ++F + +
Sbjct: 203 --FCYDKRFAEDPQCAASTLSSWIGNGISDVSSSMLRMVKCRKAISGWKKNSDFNAQNRI 260
Query: 699 LHDLEQRLKAAQKWNPTEENIMRRKEMENEFAELMGREELYWRQRSRATWLKEGDKNTSF 758
L + + K P I ++ + EE +WR +S+ WL GD+N+ F
Sbjct: 261 LRLRSELDEEKSKQYPCWSRI---SVIQTQLGVAFREEESFWRLKSKDKWLFGGDRNSKF 317
Query: 759 FHGKANQRQKQNRIARIRDDHGNWVYKQDQVTTAFSNYFEGIFKSSQPNNIEEVCQKIQN 818
F + +N + + D++GN + S YFE +F SS P N + +
Sbjct: 318 FQAMVKANRTKNSLRFLVDENGNEHTLNREKGNIASVYFENLFMSSYPANSQSALDGFKT 377
Query: 819 KLNQEMREHLEEEFTADEVAYALNQMHPLKAPGPDGFPALFYQKYWKLVGGDVTSQVLEI 878
++++EM + L + T E+ A+ ++ AP +K G D ++L
Sbjct: 378 RVSEEMNQELTQAVTELEIHSAVFSINVESAP----------EKLECCQGSDYI-EILGF 426
Query: 879 LNKGVDPASLNQTFICLIPKVKAPENPMEFRPISLCNVIMKLVTKCIANRIKDVLGEVVG 938
GV P N T + LIPK P+ + RPISLC+V+ K+++K ++ ++K L +V
Sbjct: 427 FETGVLPQEWNHTHLYLIPKFTNPQRMSDIRPISLCSVLYKIISKILSFKLKKHLPSIVS 486
Query: 939 EQQSAFIPGRLITDNALTGFEVFHYMKKKRKGKKGYMALKLDMSKAYDRIEWDFLKQVLT 998
QSAF RLI+DN L E+ H ++ K K +M K DMSKAYDR+EW FL+++L
Sbjct: 487 PSQSAFFAERLISDNILIAHEIVHSLRTNDKISKEFMVFKTDMSKAYDRVEWSFLQEILV 546
Query: 999 TMGFPSKITELISICVSSVSYSLLVNGEPSPPFSPQRGLRQGDPLSPYLFILCVEAFSGL 1058
+GF K I CV+SV+YS+L+NG+ +P+RG+RQGDP+SP+LF+LC EA +
Sbjct: 547 ALGFNDKWISWIMGCVTSVTYSVLINGQHFGHITPERGIRQGDPISPFLFVLCTEALIHI 606
Query: 1059 ISNQIRLRNLHGIKVARGAPPINHLFFADDSLIFSRATQEEASSLLDVIRQYEQASGQLV 1118
+ + + GI+ P +NHL F DD+ + RAT+ + ++ + QY SGQL+
Sbjct: 607 LQQAENSKKVSGIQFNGSGPSVNHLLFVDDTQLVCRATKSDCEQMMLCLSQYGHISGQLI 666
Query: 1119 NMDKSEISFSRNVPQTSMDTIRNRMGVKAVIVHDKYLGLPTVIGHSKKAIFGKIQERVWR 1178
N++KS I+F V + + I+NR G+ KYLGLP + SK+ +FG I+E++
Sbjct: 667 NVEKSSITFGVKVDEDTKRWIKNRSGIHLEGGTGKYLGLPENLSGSKQDLFGYIKEKLQS 726
Query: 1179 KLKGWKEKTLSKAGKEILIKAVAQAIPSYVMSCFKLPNGICSKIESLLANFWWGQKENER 1238
L GW +KTLS+ GKEIL+K++A A+P Y+M+CF+LP G+C+K+ S++ +FWW E
Sbjct: 727 HLSGWYDKTLSQGGKEILLKSIALALPVYIMTCFRLPKGLCTKLTSVMMDFWWNSMEFSN 786
Query: 1239 KIHWAAWQHLCKTKNRGDLGFRNLEDFNRALLAKQAWRLLNSEKSLLYKVWKAKYFPKCD 1298
KIHW + L K+ G GF++L+ FN+ALLAKQAWRL + KS++ +++K++YF D
Sbjct: 787 KIHWIGGKKLTLPKSLGGFGFKDLQCFNQALLAKQAWRLFSDSKSIVSQIFKSRYFMNTD 846
Query: 1299 LLKAGVGYQPSYAWRSVWGTLKFIEEGCKWSIGNGKKVSIWKDPWLPGPDSGYVRTQDVP 1358
L A G +PSY WRS+ + + G K IGNG++ ++W D WL S
Sbjct: 847 FLNARQGTRPSYTWRSILYGRELLNGGLKRLIGNGEQTNVWIDKWLFDGHSRRPMNLHSL 906
Query: 1359 EFAHEKVSDLRLWEGGSWNISKIDQLFNPAEAQLIKSIRLSWRDSEDKLIWRWSRDGMFS 1418
H KVS L +WN+ K+ +LF+ + QLI R SED W + +G+++
Sbjct: 907 MNIHMKVSHLIDPLTRNWNLKKLTELFHEKDVQLIMHQR-PLISSEDSYCWAGTNNGLYT 965
Query: 1419 VKSAYYQIQSQKI-----AATASGSNSPSFSWKTLWRVKIQNKVKHFMYRVINNLTPCRA 1473
VKS Y + + A S +P F +W ++ K+K FM++ +
Sbjct: 966 VKSGYERSSRETFKNLFKEADVYPSVNPLFD--KVWSLETVPKIKVFMWKALKGALAVED 1023
Query: 1474 NLARRGIQIQEQCALCSQDVVETQDHLFLQCSWARAAWFHHSLGLRMDLVQTSFLEWLQS 1533
L RGI+ + C C ++ +ET +HL QC +AR W + TS +
Sbjct: 1024 RLRSRGIRTADGCLFCKEE-IETINHLLFQCPFARQVWALSLIQAPATGFGTSIFSNINH 1082
Query: 1534 FCANQEDEIVAQVFHGT-----WAIWKARNESLFNNVQVHPATAMEKAQNLLAEWKEAQE 1588
N ++ + + W IWK RN++LF + + + KA W AQE
Sbjct: 1083 VIQNSQNFGIPRHMRTVSPWLLWEIWKNRNKTLFQGTGLTSSEIVAKAYEECNLWINAQE 1142
Query: 1589 HHAPCVQEKRPQQWSAPSQGRIKINVDAGWSGPHS-TGLGFVARDHRGIIMLAGTCLEAQ 1647
+ V +W+ P G +K N+ WS G+ +V RD G ++L +Q
Sbjct: 1143 KSSGGVSPSE-HKWNPPPAGELKCNIGVAWSRQKQLAGVSWVLRDSMGQVLLHSRRSYSQ 1201
Query: 1648 RLDPLIAEAMALRWSLHTALEVSLDSVIFKLDSISVVKAM 1687
A+ + W+L + D V F S ++KA+
Sbjct: 1202 VYSLFDAKIKSWDWALESMDHFHFDKVTFAATSHDIIKAL 1241
>gb|AAD29058.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
thaliana] gi|25411151|pir||H84465 hypothetical protein
At2g05200 [imported] - Arabidopsis thaliana
Length = 1229
Score = 632 bits (1629), Expect = e-179
Identities = 360/981 (36%), Positives = 536/981 (53%), Gaps = 29/981 (2%)
Query: 539 NEITSNAEKKGGIDRPIEHMKKFVRCLNQCGLEDMGFQGDPFTWCNGRKDEAHIQERLDR 598
NEI N+EK+GG R F +++ GL D+ + G+PF+W G + + +++RLDR
Sbjct: 36 NEILDNSEKRGGPPRDQGSFIDFRSFISKNGLWDLKYSGNPFSW-RGMRYDWFVRQRLDR 94
Query: 599 GVISQSFKEIWPASSVQHLLRYNSDHAPLLITVTSQPIEEGKKKKKKLFRFEQHLTLNHE 658
+ + S+ E +P+ ++L SDH PL++ V +E + K++ FRF+ L N
Sbjct: 95 AMSNNSWLESFPSGRSEYLRFEGSDHRPLVVFV-----DEARVKRRGQFRFDNRLRDNDV 149
Query: 659 LAFHLRQAWQSGGD-NAEQKLAQAKETIMALE-----TEFGSIRKKLHDLEQRLKAAQKW 712
+ +++ W + GD + K+ Q + I+ I K LE+ L A
Sbjct: 150 VNALIQETWTNAGDASVLTKMNQCRREIINWTRLQNLNSAELIEKTQKALEEALTADPP- 208
Query: 713 NPTEENIMRRKEMENEFAELMGREELYWRQRSRATWLKEGDKNTSFFHGKANQRQKQNRI 772
NPT + +E+ + EE +W+QRSR WL GD+NT +FH R+ QNR+
Sbjct: 209 NPTTIGALTAT-LEHAYK----LEEQFWKQRSRVLWLHSGDRNTGYFHAVTRNRRTQNRL 263
Query: 773 ARIRDDHGNWVYKQDQVTTAFSNYFEGIFKSSQPNNIEEVCQKIQNKLNQEMREHLEEEF 832
+ D +G +++ Q++ S YF+ IF S + V + I+ ++Q + L
Sbjct: 264 TVMEDINGVAQHEEHQISQIISGYFQQIFTSESDGDFSVVDEAIEPMVSQGDNDFLTRIP 323
Query: 833 TADEVAYALNQMHPLKAPGPDGFPALFYQKYWKLVGGDVTSQVLEILNKGVDPASLNQTF 892
+EV A+ ++ KAPGPDGF A FY YW ++ DV ++ P +N+T
Sbjct: 324 NDEEVKDAVFSINASKAPGPDGFTAGFYHSYWHIISTDVGREIRLFFTSKNFPRRMNETH 383
Query: 893 ICLIPKVKAPENPMEFRPISLCNVIMKLVTKCIANRIKDVLGEVVGEQQSAFIPGRLITD 952
I LIPK P ++RPI+LCN+ K+V K + R++ +L +++ E QSAF+PGR+I+D
Sbjct: 384 IRLIPKDLGPRKVADYRPIALCNIFYKIVAKIMTKRMQLILPKLISENQSAFVPGRVISD 443
Query: 953 NALTGFEVFHYMKKKRKGKKGYMALKLDMSKAYDRIEWDFLKQVLTTMGFPSKITELISI 1012
N L EV H+++ K MA+K DMSKAYDR+EWDFLK+VL GF S + +
Sbjct: 444 NVLITHEVLHFLRTSSAKKHCSMAVKTDMSKAYDRVEWDFLKKVLQRFGFHSIWIDWVLE 503
Query: 1013 CVSSVSYSLLVNGEPSPPFSPQRGLRQGDPLSPYLFILCVEAFSGLISNQIRLRNLHGIK 1072
CV+SVSYS L+NG P P RGLRQGDPLSP LFILC E SGL + RLR L G++
Sbjct: 504 CVTSVSYSFLINGTPQGKVVPTRGLRQGDPLSPCLFILCTEVLSGLCTRAQRLRQLPGVR 563
Query: 1073 VARGAPPINHLFFADDSLIFSRATQEEASSLLDVIRQYEQASGQLVNMDKSEISFSRNVP 1132
V+ P +NHL FADD++ FS++ E + L +++ +Y +ASGQ +N KS ++FS P
Sbjct: 564 VSINGPRVNHLLFADDTMFFSKSDPESCNKLSEILSRYGKASGQSINFHKSSVTFSSKTP 623
Query: 1133 QTSMDTIRNRMGVKAVIVHDKYLGLPTVIGHSKKAIFGKIQERVWRKLKGWKEKTLSKAG 1192
++ ++ + ++ KYLGLP G K+ IFG I +++ +K W + LS+AG
Sbjct: 624 RSVKGQVKRILKIRKEGGTGKYLGLPEHFGRRKRDIFGAIIDKIRQKSHSWASRFLSQAG 683
Query: 1193 KEILIKAVAQAIPSYVMSCFKLPNGICSKIESLLANFWWGQKENERKIHWAAWQHLCKTK 1252
K++++KAV ++P Y MSCFKLP+ +C KI+SLL FWW K + RK W AW L K
Sbjct: 684 KQVMLKAVLASMPLYSMSCFKLPSALCRKIQSLLTRFWWDTKPDVRKTSWVAWSKLTNPK 743
Query: 1253 NRGDLGFRNLEDFNRALLAKQAWRLLNSEKSLLYKVWKAKYFPKCDLLKAGVGYQPSYAW 1312
N G LGFR++E N +LLAK WRLLNS +SLL ++ KY ++ + QPS+ W
Sbjct: 744 NAGGLGFRDIERCNDSLLAKLGWRLLNSPESLLSRILLGKYCHSSSFMECKLPSQPSHGW 803
Query: 1313 RSVWGTLKFIEEGCKWSIGNGKKVSIWKDPWLPGPDSGYVRTQDVPEFAHEKVSDLRLWE 1372
RS+ + ++EG W I NG+KVSIW DPWL + E +VS L
Sbjct: 804 RSIIAGREILKEGLGWLITNGEKVSIWNDPWLSISKPLVPIGPALREHQDLRVSALINQN 863
Query: 1373 GGSWNISKIDQLFNPAEAQLIKSIRLSWRDSEDKLIWRWSRDGMFSVKSAYYQIQSQKIA 1432
W+ +KI + P LIK + DKL W + G ++ +S Y IA
Sbjct: 864 TLQWDWNKIAVIL-PNYENLIKQLPAPSSRGVDKLAWLPVKSGQYTSRSGY------GIA 916
Query: 1433 ATAS-GSNSPSFSWKT-LWRVKIQNKVKHFMYRVINNLTPCRANLARRGIQIQEQCALCS 1490
+ AS F+W++ LW+++ K+KH M++ P L RR I C C
Sbjct: 917 SVASIPIPQTQFNWQSNLWKLQTLPKIKHLMWKAAMEALPVGIQLVRRHISPSAACHRCG 976
Query: 1491 QDVVETQDHLFLQCSWARAAW 1511
E+ HLF C +A W
Sbjct: 977 --APESTTHLFFHCEFAAQVW 995
Score = 48.1 bits (113), Expect = 0.003
Identities = 41/123 (33%), Positives = 60/123 (48%), Gaps = 3/123 (2%)
Query: 1614 VDAGWSGPHS-TGLGFVARDHRGIIMLAGTCLEAQRLDP--LIAEAMALRWSLHTALEVS 1670
VDA W S G G+V + + T R P L AEA A++ +L AL++
Sbjct: 1089 VDAAWIAQSSLAGSGWVFQSATALEKETATYSAGCRRLPSALSAEAWAIKSALLHALQLG 1148
Query: 1671 LDSVIFKLDSISVVKAMRTNSSLWTIQNLM*DCIYLASLFTSISFNHVSRNANVPAHTLA 1730
++ DS SVV A+ +N S+ I L+ + L F S+ FN +SR+AN A A
Sbjct: 1149 RTDLMVLSDSKSVVDALTSNISINEIYGLLMEIRALRVSFHSLCFNFISRSANAIADATA 1208
Query: 1731 SLA 1733
L+
Sbjct: 1209 KLS 1211
>gb|AAP53315.1| putative reverse transcriptase [Oryza sativa (japonica
cultivar-group)] gi|37533452|ref|NP_921028.1| putative
reverse transcriptase [Oryza sativa (japonica
cultivar-group)] gi|20279456|gb|AAM18736.1| putative
reverse transcriptase [Oryza sativa (japonica
cultivar-group)]
Length = 1509
Score = 624 bits (1609), Expect = e-177
Identities = 362/971 (37%), Positives = 512/971 (52%), Gaps = 114/971 (11%)
Query: 802 KSSQPNNIEEVCQKIQNKLNQEMREHLEEEFTADEVAYALNQMHPLKAPGPDGFPALFYQ 861
K Q N ++ V +K+ +N+ +R EFT +EV AL+ + LKAPGPDG PA FY+
Sbjct: 628 KLEQQNLLDVVDRKVSGAMNESLRA----EFTREEVKEALDAIGDLKAPGPDGMPAGFYK 683
Query: 862 KYWKLVGGDVTSQVLEILNKGVDPASLNQTFICLIPKVKAPENPMEFRPISLCNVIMKLV 921
W +VG VT +VLE+L G P N T I LIPKV
Sbjct: 684 ACWDVVGEKVTVEVLEVLRGGAIPEGWNDTTIVLIPKV---------------------- 721
Query: 922 TKCIANRIKDVLGEVVGEQQSAFIPGRLITDNALTGFEVFHYMKKKRKGKKGYMALKLDM 981
+ANR+K +L +V+ QSAF+PGRLI+DN L +E+ HYM+ KR G+ GY A KLDM
Sbjct: 722 ---LANRLKKILPDVISPAQSAFVPGRLISDNILIAYEMTHYMRNKRSGQVGYAAFKLDM 778
Query: 982 SKAYDRIEWDFLKQVLTTMGFPSKITELISICVSSVSYSLLVNGEPSPPFSPQRGLRQGD 1041
SKAYDR+EW FL ++ +GF + LI CVS+V+Y + VNGE S FSP+RGLRQGD
Sbjct: 779 SKAYDRVEWSFLHDMMLKLGFHTDWVNLIMKCVSTVTYRIRVNGELSESFSPERGLRQGD 838
Query: 1042 PLSPYLFILCVEAFSGLISNQIRLRNLHGIKVARGAPPINHLFFADDSLIFSRATQEEAS 1101
PLSPYLF+LC E FS L+S LHGI++ +GAP ++HL FADDSLI RA EA
Sbjct: 839 PLSPYLFLLCAEGFSALLSKTEEEGRLHGIRICQGAPSVSHLLFADDSLILCRANGGEAQ 898
Query: 1102 SLLDVIRQYEQASGQLVNMDKSEISFSRNVPQTSMDTIRNRMGVKAVIVHDKYLGLPTVI 1161
L +++ YE+ SGQ++N DKS + FS N + + ++ ++KYLGLP +
Sbjct: 899 QLQTILQIYEECSGQVINKDKSAVMFSPNTSSLEKGAVMAALNMQRETTNEKYLGLPVFV 958
Query: 1162 GHSKKAIFGKIQERVWRKLKGWKEKTLSKAGKEILIKAVAQAIPSYVMSCFKLPNGICSK 1221
G S+ IF ++ER+W++++GWKEK LS+AGKEILIKAVAQ IP++ M CF+L +C +
Sbjct: 959 GRSRTKIFSYLKERIWQRIQGWKEKLLSRAGKEILIKAVAQVIPTFAMGCFELTKDLCDQ 1018
Query: 1222 IESLLANFWWGQKENERKIHWAAWQHLCKTKNRGDLGFRNLEDFNRALLAKQAWRLLNSE 1281
I ++A +WW +E + K+HW +W L KN G LGFR++ FN A+LAKQ WRL+
Sbjct: 1019 ISKMIAKYWWSNQEKDNKMHWLSWNKLTLPKNMGGLGFRDIYIFNLAMLAKQGWRLIQDP 1078
Query: 1282 KSLLYKVWKAKYFPKCDLLKAGVGYQPSYAWRSVWGTLKFIEEGCKWSIGNGKKVSIWKD 1341
SL +V +AKYFP D + SY WRS+ L+ ++ G W +G+G K++IW D
Sbjct: 1079 DSLCSRVLRAKYFPLGDCFRPKQTSNVSYTWRSIQKGLRVLQNGMIWRVGDGSKINIWAD 1138
Query: 1342 PWLPGPDSGYVRTQDVPEFAH--EKVSDLRLWEGGSWNISKIDQLFNPAEAQLIKSIRLS 1399
PW+P G+ R P A+ KV +L G+W+ + Q F + IKSI +
Sbjct: 1139 PWIP---RGWSRKPMTPRGANLVTKVEELIDPYTGTWDEDLLSQTFWEEDVAAIKSIPVH 1195
Query: 1400 WRDSEDKLIWRWSRDGMFSVKSAYYQIQSQKIAATASGSNSPSFS---------WKTLWR 1450
+ ED L W + G F+VKSAY ++Q +++ AS + P S WK LW+
Sbjct: 1196 V-EMEDVLAWHFDARGCFTVKSAY-KVQ-REMERRASRNGCPGVSNWESGDDDFWKKLWK 1252
Query: 1451 VKIQNKVKHFMYRVINNLTPCRANLARRGIQIQEQCALCSQDVVETQDHLFLQCSWARAA 1510
+ + K+KHF++R+ +N RANL RG+ + +C +C + E HLF +C +
Sbjct: 1253 LGVPGKIKHFLWRMCHNTLALRANLHHRGMDVDTRCVMCGR-YNEDAGHLFFKCKPVKKV 1311
Query: 1511 WFHHSLGLRMDLV--QTSFLEWLQSFCANQEDEIVAQVFHGTWAIWKARNESLFNNVQVH 1568
W +L ++ QTS LQS E+E + + W WK RNE
Sbjct: 1312 WQALNLEELRSMLEQQTSGKNVLQSIYCRPENERTSAIVC-LWQWWKERNE--------- 1361
Query: 1569 PATAMEKAQNLLAEWKEAQEHHAPCVQEKRPQQWSAPSQGRIKINVDAGWSGPHSTG-LG 1627
E C W P +KIN D +S G G
Sbjct: 1362 ----------------EKSPRTGECAV------WRRPPLNFVKINTDGAYSSNMKQGGWG 1399
Query: 1628 FVARDHRGIIMLAGTCLEAQRLDPLIAEAMALRWSLHTALEVSLDSVIFKLDSISVVKAM 1687
FV RD G ++ AG A D AE +A ++ TA E + + + DS+ +
Sbjct: 1400 FVIRDQTGAVLQAGAGPAAYLQDAFHAEVVACAAAIKTASERGMSRIELETDSMML---- 1455
Query: 1688 RTNSSLWTIQNLM*DCIYLASLFTSISFNHVSRNANVPAHTLASLACSYNTKLWWDVPPP 1747
+ R+ N AH LA+ C+ T W PP
Sbjct: 1456 ----------------------------RYSPRSCNKVAHELAAYGCNLQTVSSWAGCPP 1487
Query: 1748 EIEQALFVDAA 1758
+E+ + D+A
Sbjct: 1488 GLERLVSSDSA 1498
Score = 97.1 bits (240), Expect = 5e-18
Identities = 65/208 (31%), Positives = 102/208 (48%), Gaps = 5/208 (2%)
Query: 506 YGYPESQNKIKSWDLLVRLKGETSGPWMCFGDFNEITSNAEKKGGIDRPIEHMKKFVRCL 565
YG S+ K ++W + L + PW+ GDFNEI + EK+ G + M +F L
Sbjct: 397 YGDAHSETKHRTWTTMRGLIDNPTTPWLMAGDFNEILFSHEKQCGRMKAQSAMDEFRHAL 456
Query: 566 NQCGLEDMGFQGDPFTWCN-GRKDEAHIQERLDRGVISQSFKEIWPASSVQHLLRYNSDH 624
CGL+D+GF+GD FTW N E +I+E LDR V + ++ ++PA+ V + +SDH
Sbjct: 457 TDCGLDDLGFEGDAFTWRNHSHSQEGYIREWLDRAVANPEWRAMFPAARVINGDPRHSDH 516
Query: 625 APLLITVTSQPIEEGKKKKKKLFRFEQHLTLNHELAFHLRQAWQ-SGGDNAEQKLAQAKE 683
P++I + + + FRFE + +++AW S G A
Sbjct: 517 RPVIIELEGKNKGVRGRNGHNDFRFEAAWLEEEKFKEVVKEAWDVSAGLQGLLVHASLAG 576
Query: 684 TIMALETEFGSIRKKLHDLEQRLKAAQK 711
L + ++ L DLE+RLK +K
Sbjct: 577 VAAGLSSWSSNV---LGDLEKRLKKVKK 601
>emb|CAB81184.1| putative protein [Arabidopsis thaliana] gi|4539357|emb|CAB40051.1|
putative protein [Arabidopsis thaliana]
gi|7486147|pir||T04278 hypothetical protein F25I24.40 -
Arabidopsis thaliana
Length = 1294
Score = 613 bits (1581), Expect = e-173
Identities = 341/940 (36%), Positives = 523/940 (55%), Gaps = 23/940 (2%)
Query: 405 RGVGSPRTVKVLQRIIKAEDPDIVFLMETHKKNGELKNIVARLGFKNHLGVECRGEGRSS 464
+G+G P T L + K D++FL+ET K + N+ + LGF N + +G
Sbjct: 370 KGIGVPLTQSQLSNLCKVFKFDVLFLIETLNKCEVISNLASVLGFPNVITQPPQGHS--- 426
Query: 465 GGGLALLWKEDFNIDIISYSLHHITASHTNADQITCFLTGFYGYPESQNKIKSWDLLVRL 524
GGLALLWK+ + + HI H + + I +L+ YG+P + W L
Sbjct: 427 -GGLALLWKDSVRLSNLYQDDRHIDV-HISINNINFYLSRVYGHPCQSERHSLWTHFENL 484
Query: 525 KGETSGPWMCFGDFNEITSNAEKKGGIDRPIEHMKKFVRCLNQCGLEDMGFQGDPFTWCN 584
+ PW+ GDFNEI SN EK GG R + F ++ C L+D+ GD F+W
Sbjct: 485 SKTRNDPWILIGDFNEILSNNEKIGGPQRDEWTFRGFRNMVSTCDLKDIRSIGDRFSWV- 543
Query: 585 GRKDEAHIQERLDRGVISQSFKEIWPASSVQHLLRYNSDHAPLLITVTSQPIEEGKKKKK 644
G + ++ LDR I+ ++P + ++ L SDH PL ++ +E+ + +K
Sbjct: 544 GERHSHTVKCCLDRAFINSEGAFLFPFAELEFLEFTGSDHKPLFLS-----LEKTETRKM 598
Query: 645 KLFRFEQHLTLNHELAFHLRQAWQSGGDNAEQKLAQAKETIMALETEFG-----SIRKKL 699
+ FRF++ L +++ W + + L T + + R ++
Sbjct: 599 RPFRFDKRLLEVPHFKTYVKAGWNKAINGQRKHLPDQVRTCRQAMAKLKHKSNLNSRIRI 658
Query: 700 HDLEQRL-KAAQKWNPTEENIMRRKEMENEFAELMGREELYWRQRSRATWLKEGDKNTSF 758
+ L+ L KA N TE + ++ E EE YW+Q+SR W+KEGD+NT F
Sbjct: 659 NQLQAALDKAMSSVNRTERRTI--SHIQRELTVAYRDEERYWQQKSRNQWMKEGDRNTEF 716
Query: 759 FHGKANQRQKQNRIARIRDDHGNWVYKQD-QVTTAFSNYFEGIFKSS-QPNNIEEVCQKI 816
FH R NR+ I+D+ G +Y+ D ++ +F +++S+ +P +I +
Sbjct: 717 FHACTKTRFSVNRLVTIKDEEG-MIYRGDKEIGVHAQEFFTKVYESNGRPVSIIDFAG-F 774
Query: 817 QNKLNQEMREHLEEEFTADEVAYALNQMHPLKAPGPDGFPALFYQKYWKLVGGDVTSQVL 876
+ + +++ + L ++ + E+ A+ + KAPGPDG A FY+ W++VG DV +V
Sbjct: 775 KPIVTEQINDDLTKDLSDLEIYNAICHIGDDKAPGPDGLTARFYKSCWEIVGPDVIKEVK 834
Query: 877 EILNKGVDPASLNQTFICLIPKVKAPENPMEFRPISLCNVIMKLVTKCIANRIKDVLGEV 936
S+N T IC+IPK+ PE ++RPI+LCNV+ K+++KC+ R+K L +
Sbjct: 835 IFFRTSYMKQSINHTNICMIPKITNPETLSDYRPIALCNVLYKIISKCLVERLKGHLDAI 894
Query: 937 VGEQQSAFIPGRLITDNALTGFEVFHYMKKKRKGKKGYMALKLDMSKAYDRIEWDFLKQV 996
V + Q+AFIPGRL+ DN + E+ H +K +++ + YMA+K D+SKAYDR+EW+FL+
Sbjct: 895 VSDSQAAFIPGRLVNDNVMIAHEMMHSLKTRKRVSQSYMAVKTDVSKAYDRVEWNFLETT 954
Query: 997 LTTMGFPSKITELISICVSSVSYSLLVNGEPSPPFSPQRGLRQGDPLSPYLFILCVEAFS 1056
+ GF + I V SV+YS+LVNG P PQRG+RQGDPLSPYLFILC + +
Sbjct: 955 MRLFGFSETWIKWIMGAVKSVNYSVLVNGIPHGTIQPQRGIRQGDPLSPYLFILCADILN 1014
Query: 1057 GLISNQIRLRNLHGIKVARGAPPINHLFFADDSLIFSRATQEEASSLLDVIRQYEQASGQ 1116
LI N++ ++ GI++ G P + HL FADDSL F ++ +L DV YE SGQ
Sbjct: 1015 HLIKNRVAEGDIRGIRIGNGVPGVTHLQFADDSLFFCQSNVRNCQALKDVFDVYEYYSGQ 1074
Query: 1117 LVNMDKSEISFSRNVPQTSMDTIRNRMGVKAVIVHDKYLGLPTVIGHSKKAIFGKIQERV 1176
+NM KS I+F V T+ + ++N +G+++ KYLGLP G K+ +F I ERV
Sbjct: 1075 KINMSKSMITFGSRVHGTTQNRLKNILGIQSHGGGGKYLGLPEQFGRKKRDMFNYIIERV 1134
Query: 1177 WRKLKGWKEKTLSKAGKEILIKAVAQAIPSYVMSCFKLPNGICSKIESLLANFWWGQKEN 1236
++ W K LS AGKEI++K+VA ++P Y MSCFKLP I S+IE+LL NFWW +
Sbjct: 1135 KKRTSSWSAKYLSPAGKEIMLKSVAMSMPVYAMSCFKLPLNIVSEIEALLMNFWWEKNAK 1194
Query: 1237 ERKIHWAAWQHLCKTKNRGDLGFRNLEDFNRALLAKQAWRLLNSEKSLLYKVWKAKYFPK 1296
+R+I W AW+ L +K G LGFR+L FN ALLAKQ WR++N+ SL ++ KA+YF +
Sbjct: 1195 KREIPWIAWKRLQYSKKEGGLGFRDLAKFNDALLAKQVWRMINNPNSLFARIMKARYFRE 1254
Query: 1297 CDLLKAGVGYQPSYAWRSVWGTLKFIEEGCKWSIGNGKKV 1336
+L A SY W S+ L I++G ++ +G+GK V
Sbjct: 1255 DSILDAKRQRYQSYGWTSMLAGLDVIKKGSRFIVGDGKTV 1294
Database: nr
Posted date: Jul 5, 2005 12:34 AM
Number of letters in database: 863,360,394
Number of sequences in database: 2,540,612
Lambda K H
0.329 0.141 0.460
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,053,656,181
Number of Sequences: 2540612
Number of extensions: 130213998
Number of successful extensions: 363953
Number of sequences better than 10.0: 1491
Number of HSP's better than 10.0 without gapping: 915
Number of HSP's successfully gapped in prelim test: 585
Number of HSP's that attempted gapping in prelim test: 359319
Number of HSP's gapped (non-prelim): 2595
length of query: 1758
length of database: 863,360,394
effective HSP length: 142
effective length of query: 1616
effective length of database: 502,593,490
effective search space: 812191079840
effective search space used: 812191079840
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 83 (36.6 bits)
Lotus: description of TM0191.8