BLAST2 result
BLASTP 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TM0189.9
(214 letters)
Database: nr
2,540,612 sequences; 863,360,394 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAR13317.1| gag-pol polyprotein [Phaseolus vulgaris] 184 1e-45
dbj|BAD18986.1| GAG-POL precursor [Vitis vinifera] 167 1e-40
gb|AAD22283.1| putative retroelement pol polyprotein [Arabidopsi... 152 6e-36
dbj|BAA99310.1| orf764 [Beta vulgaris subsp. vulgaris] gi|983838... 148 9e-35
dbj|BAD66751.1| orf764 [Beta vulgaris subsp. vulgaris] 148 9e-35
gb|AAX96029.1| retrotransposon protein, putative, unclassified [... 145 1e-33
emb|CAD41263.1| OSJNBb0103I08.2 [Oryza sativa (japonica cultivar... 144 2e-33
gb|AAF79618.1| F5M15.26 [Arabidopsis thaliana] gi|25402907|pir||... 144 2e-33
gb|AAU90115.1| putative polyprotein [Oryza sativa (japonica cult... 144 2e-33
gb|AAP44696.1| putative GAG-POL precursor [Oryza sativa (japonic... 143 4e-33
ref|XP_471208.1| OSJNBa0070D17.11 [Oryza sativa (japonica cultiv... 143 4e-33
emb|CAE06012.3| OSJNBa0016O02.22 [Oryza sativa (japonica cultiva... 143 4e-33
gb|AAU10826.1| putative polyprotein [Oryza sativa (japonica cult... 143 4e-33
emb|CAD40172.2| OSJNBa0061A09.11 [Oryza sativa (japonica cultiva... 142 5e-33
gb|AAO66535.1| transposon protein, putative, unclassified [Oryza... 142 5e-33
emb|CAE03705.3| OSJNBb0034G17.13 [Oryza sativa (japonica cultiva... 142 5e-33
emb|CAE03073.3| OSJNBa0089E12.11 [Oryza sativa (japonica cultiva... 142 5e-33
gb|AAU44223.1| putative polyprotein [Oryza sativa (japonica cult... 142 5e-33
gb|AAP52619.1| putative gag-pol precursor [Oryza sativa (japonic... 142 6e-33
gb|AAP52617.1| putative polyprotein [Oryza sativa (japonica cult... 142 6e-33
>gb|AAR13317.1| gag-pol polyprotein [Phaseolus vulgaris]
Length = 1859
Score = 184 bits (467), Expect = 1e-45
Identities = 96/207 (46%), Positives = 130/207 (62%), Gaps = 2/207 (0%)
Query: 1 VSDNGMQFASNQTKEFCEEMGIQRRFSSVEHPQTNGQADSANKVIQQGLKRPLSEAKGAW 60
++DNG QF EF E++ I+ SSVEHPQTNGQA++ANKVI LK+ L +KG W
Sbjct: 1642 ITDNGRQFTDRGLAEFYEKLHIKHITSSVEHPQTNGQAEAANKVILNELKKRLGPSKGNW 1701
Query: 61 LDELPIVFWSYNTTQHSTTGKTPFRMTYGADVMLPVEIDNSSWRTTPKFEGENSSNMAVE 120
+EL V W+Y T STT +TP+ +TYG + M+PVEI S R N ++ V
Sbjct: 1702 TEELLEVLWAYRCTPQSTTQETPYSLTYGTEAMIPVEIGEPSLRRQTLDLDLNKESLLVG 1761
Query: 121 LDLLSETHNEARLKEAAMKQRAAAKYDTKVKPREMQEGDLVLKKRTGV--TGNKLSPIWE 178
LDL++E ++ +++E A K RAA +Y++KVKPR Q+GDLV + R+ G K S WE
Sbjct: 1762 LDLINELRDKCKIREEACKIRAARRYNSKVKPRSYQKGDLVWRMRSDARKDGGKFSSNWE 1821
Query: 179 GPYRILKALGRGAYHLESLDGKRVPRS 205
GP+RI GAY+LE L GK PR+
Sbjct: 1822 GPFRISNTATGGAYYLEYLSGKSAPRT 1848
>dbj|BAD18986.1| GAG-POL precursor [Vitis vinifera]
Length = 1027
Score = 167 bits (424), Expect = 1e-40
Identities = 83/203 (40%), Positives = 120/203 (58%), Gaps = 4/203 (1%)
Query: 1 VSDNGMQFASNQTKEFCEEMGIQRRFSSVEHPQTNGQADSANKVIQQGLKRPLSEAKGAW 60
++DNG QF S + FC E+ I+ +S+ +PQ+NGQA++ NK + LK+ L +AKG W
Sbjct: 808 IADNGPQFDSIAFRNFCSELNIRNSYSTPRYPQSNGQAEATNKTLITALKKRLEQAKGKW 867
Query: 61 LDELPIVFWSYNTTQHSTTGKTPFRMTYGADVMLPVEIDNSSWRTTPKFEGENSSNMAVE 120
++ELP V W+Y TT TG TPF + YG D ++P+EI + T + + + +
Sbjct: 868 VEELPGVLWAYRTTPGRPTGNTPFALAYGMDAVIPIEIGLPTIWTNAAKQSDANMQLGRN 927
Query: 121 LDLLSETHNEARLKEAAMKQRAAAKYDTKVKPREMQEGDLVLKK----RTGVTGNKLSPI 176
LD E A ++ A +QRA+A Y+ KV+PR ++ G LVL+K T V K
Sbjct: 928 LDWTDEVRESASIRMADYQQRASAHYNRKVRPRSLKNGTLVLRKFFENTTEVGAGKFQAN 987
Query: 177 WEGPYRILKALGRGAYHLESLDG 199
WEGPY + KA GAYHL+ LDG
Sbjct: 988 WEGPYIVSKASDNGAYHLQKLDG 1010
>gb|AAD22283.1| putative retroelement pol polyprotein [Arabidopsis thaliana]
gi|25411637|pir||F84528 probable retroelement pol
polyprotein [imported] - Arabidopsis thaliana
Length = 1787
Score = 152 bits (384), Expect = 6e-36
Identities = 90/216 (41%), Positives = 117/216 (53%), Gaps = 6/216 (2%)
Query: 1 VSDNGMQFASNQTKEFCEEMGIQRRFSSVEHPQTNGQADSANKVIQQGLKRPLSEAKGAW 60
V+DNG QF S Q + FC + I+ S+ +PQ NGQA++ NK I GLK+ L E KGAW
Sbjct: 1566 VTDNGTQFTSLQFEGFCAKWKIRLSKSTPRYPQCNGQAEATNKTILDGLKKRLDEKKGAW 1625
Query: 61 LDELPIVFWSYNTTQHSTTGKTPFRMTYGADVMLPVEIDNSSWRTTPKFEGE--NSSNMA 118
DEL V WSY TT +T +TPF +TYG + + P E + R + N +
Sbjct: 1626 ADELDGVLWSYRTTPRRSTDRTPFSLTYGMEALAPCEAGLPTVRRSMLINDPTLNDQMLL 1685
Query: 119 VELDLLSETHNEARLKEAAMKQRAAAKYDTKVKPREMQEGDLVLKKRTGVT----GNKLS 174
LD L E ++A L+ +Q AA Y+ KVK R EGDLVL+K T KL
Sbjct: 1686 DNLDTLEEQRDQALLRIQNYQQAAAKFYNKKVKNRLFAEGDLVLRKVFENTVEQDAGKLG 1745
Query: 175 PIWEGPYRILKALGRGAYHLESLDGKRVPRS*TQQN 210
WEGPY I K + G Y L ++DG +PRS N
Sbjct: 1746 AHWEGPYLISKVVKPGVYELLTMDGTPIPRSWNSAN 1781
>dbj|BAA99310.1| orf764 [Beta vulgaris subsp. vulgaris] gi|9838386|ref|NP_063998.1|
hypothetical protein [Beta vulgaris subsp. vulgaris]
Length = 764
Score = 148 bits (374), Expect = 9e-35
Identities = 81/209 (38%), Positives = 123/209 (58%), Gaps = 4/209 (1%)
Query: 1 VSDNGMQFASNQTKEFCEEMGIQRRFSSVEHPQTNGQADSANKVIQQGLKRPLSEAKGAW 60
V D+G QF + K++C E I+ ++V HPQ+NGQA++ANK I L++ L E KG W
Sbjct: 545 VFDHGTQFDCDTIKDYCAEFKIKFASAAVCHPQSNGQAEAANKQILLALQKKLEEHKGLW 604
Query: 61 LDELPIVFWSYNTTQHSTTGKTPFRMTYGADVMLPVEIDNSSWRTTPKFEGENSSNMAVE 120
D +P V W+ TT+ TGK+PF + +GA+ ++P+E+ S+R N M
Sbjct: 605 ADLVPEVLWANRTTEKGATGKSPFSLAFGAEAVVPIEVGLPSFRVQHYDPEVNEQLMREA 664
Query: 121 LDLLSETHNEARLKEAAMKQRAAAKYDTKVKPREMQEGDLVLKKRTGV-TGN---KLSPI 176
LD L E +A LK AA K R + Y+ +V+ R + EGDLVL++ V GN K +
Sbjct: 665 LDQLPEMRLQAALKLAAQKNRMSRIYNRRVRHRPLTEGDLVLRRTAAVGKGNVHGKFTAN 724
Query: 177 WEGPYRILKALGRGAYHLESLDGKRVPRS 205
WEGPY+I + + G+Y L +++G+ + S
Sbjct: 725 WEGPYQICEQVAPGSYKLMTVEGEPLKNS 753
>dbj|BAD66751.1| orf764 [Beta vulgaris subsp. vulgaris]
Length = 764
Score = 148 bits (374), Expect = 9e-35
Identities = 81/209 (38%), Positives = 123/209 (58%), Gaps = 4/209 (1%)
Query: 1 VSDNGMQFASNQTKEFCEEMGIQRRFSSVEHPQTNGQADSANKVIQQGLKRPLSEAKGAW 60
V D+G QF + K++C E I+ ++V HPQ+NGQA++ANK I L++ L E KG W
Sbjct: 545 VFDHGTQFDCDTIKDYCAEFKIKFASAAVCHPQSNGQAEAANKQILLALQKKLEEHKGLW 604
Query: 61 LDELPIVFWSYNTTQHSTTGKTPFRMTYGADVMLPVEIDNSSWRTTPKFEGENSSNMAVE 120
D +P V W+ TT+ TGK+PF + +GA+ ++P+E+ S+R N M
Sbjct: 605 ADLVPEVLWANRTTEKGATGKSPFSLAFGAEAVVPIEVGLPSFRVQHYDPEVNEQLMREA 664
Query: 121 LDLLSETHNEARLKEAAMKQRAAAKYDTKVKPREMQEGDLVLKKRTGV-TGN---KLSPI 176
LD L E +A LK AA K R + Y+ +V+ R + EGDLVL++ V GN K +
Sbjct: 665 LDQLPEMRLQAALKLAAQKNRMSRIYNRRVRHRPLTEGDLVLRRTAAVGKGNVHGKFTAN 724
Query: 177 WEGPYRILKALGRGAYHLESLDGKRVPRS 205
WEGPY+I + + G+Y L +++G+ + S
Sbjct: 725 WEGPYQICEQVAPGSYKLMTVEGEPLKNS 753
>gb|AAX96029.1| retrotransposon protein, putative, unclassified [Oryza sativa
(japonica cultivar-group)]
Length = 1058
Score = 145 bits (365), Expect = 1e-33
Identities = 74/211 (35%), Positives = 121/211 (57%), Gaps = 7/211 (3%)
Query: 1 VSDNGMQFASNQTKEFCEEMGIQRRFSSVEHPQTNGQADSANKVIQQGLK-----RPLSE 55
++DN QF S +++C +G++ F+SV HP +NGQ + AN ++ QG+K R +S
Sbjct: 831 ITDNNSQFISADFQDYCIGLGVKICFASVSHPYSNGQVERANSIVLQGIKTRVYDRLMSH 890
Query: 56 AKGAWLDELPIVFWSYNTTQHSTTGKTPFRMTYGADVMLPVEIDNSSWRTTPKFEGENSS 115
K W++ELP V W+ TT ++ KTPF + YG++ MLP E+ + S R ++ E
Sbjct: 891 DK-KWVEELPSVLWAVRTTPTTSNKKTPFFLVYGSEAMLPTELRHQSTRVQRYYDEEQEE 949
Query: 116 NMAVELDLLSETHNEARLKEAAMKQRAAAKYDTKVKPREMQEGDLVLKKRTGVTG-NKLS 174
+ +++LL E ++ A+ +Q Y+ ++K R + GD VL++ G NKLS
Sbjct: 950 QRSDDVNLLEEHRERVAVRAASYQQALRRYYEKRIKARTLSIGDYVLRRVQSQAGHNKLS 1009
Query: 175 PIWEGPYRILKALGRGAYHLESLDGKRVPRS 205
P WEGPY I + L GA+ + +DG+ + S
Sbjct: 1010 PKWEGPYMITQVLRPGAFKIADVDGRELANS 1040
>emb|CAD41263.1| OSJNBb0103I08.2 [Oryza sativa (japonica cultivar-group)]
gi|38344987|emb|CAE02793.2| OSJNBa0011L07.17 [Oryza
sativa (japonica cultivar-group)]
gi|50927112|ref|XP_473361.1| OSJNBa0011L07.17 [Oryza
sativa (japonica cultivar-group)]
Length = 943
Score = 144 bits (363), Expect = 2e-33
Identities = 81/204 (39%), Positives = 116/204 (56%), Gaps = 4/204 (1%)
Query: 1 VSDNGMQFASNQTKEFCEEMGIQRRFSSVEHPQTNGQADSANKVIQQGLKRPL-SEAKGA 59
V DNG QF S + K+ C+ + +Q F+SV HPQTNG + AN I + +K+ L KG
Sbjct: 728 VCDNGKQFESGKFKDMCKGLNLQINFASVGHPQTNGAVERANGKIVEAIKKRLEGSTKGK 787
Query: 60 WLDELPIVFWSYNTTQHSTTGKTPFRMTYGADVMLPVEIDNSSWRTTPKFEGENSSNMAV 119
W ++L V W+ TT +TG TPFR+ YG + M P E+ +S R F+ ++ +
Sbjct: 788 WPEDLLSVLWALRTTVVRSTGMTPFRLVYGDEAMTPSEVGANSPRVV--FDQKDEEGREI 845
Query: 120 ELDLLSETHNEARLKEAAMKQRAAAKYDTKVKPREMQEGDLVLKKRTG-VTGNKLSPIWE 178
L++L E EA K A + + Y+ KVK R+++EGDLVLKK V KL WE
Sbjct: 846 TLEMLDEIRVEALEKMAQSTEGTKSYYNKKVKIRQIEEGDLVLKKTLNEVAVEKLESKWE 905
Query: 179 GPYRILKALGRGAYHLESLDGKRV 202
GP+ + + L GAY L LDG+ +
Sbjct: 906 GPFIVKRKLETGAYKLAHLDGEEL 929
>gb|AAF79618.1| F5M15.26 [Arabidopsis thaliana] gi|25402907|pir||H86337 protein
F5M15.26 [imported] - Arabidopsis thaliana
Length = 1838
Score = 144 bits (362), Expect = 2e-33
Identities = 84/211 (39%), Positives = 109/211 (50%), Gaps = 6/211 (2%)
Query: 1 VSDNGMQFASNQTKEFCEEMGIQRRFSSVEHPQTNGQADSANKVIQQGLKRPLSEAKGAW 60
++DNG QF S + FC I+ S+ +PQ NGQA++ NK I GLK+ L E KGAW
Sbjct: 1617 ITDNGSQFISLSFENFCASWKIRLNKSTPRYPQGNGQAEATNKTILSGLKKRLDEKKGAW 1676
Query: 61 LDELPIVFWSYNTTQHSTTGKTPFRMTYGADVMLPVEIDNSSWRTTPKFEGE--NSSNMA 118
DEL V WSY TT S T +TPF YG + M P E+ SS R + + N M
Sbjct: 1677 ADELDGVLWSYRTTPRSATDQTPFAHAYGMEAMAPAEVGYSSLRRSMMVKNPELNDRMML 1736
Query: 119 VELDLLSETHNEARLKEAAMKQRAAAKYDTKVKPREMQEGDLVLKK----RTGVTGNKLS 174
LD L E N A + + AA Y+ KV R GDLVL+K + KL
Sbjct: 1737 DRLDDLEEIRNAALCRIQNYQLAAAKHYNQKVHNRHFDVGDLVLRKVFENTAEINAGKLG 1796
Query: 175 PIWEGPYRILKALGRGAYHLESLDGKRVPRS 205
WEG Y++ K + G Y L ++ G VPR+
Sbjct: 1797 ANWEGSYQVSKIVRPGDYELLTMSGTAVPRT 1827
>gb|AAU90115.1| putative polyprotein [Oryza sativa (japonica cultivar-group)]
Length = 1626
Score = 144 bits (362), Expect = 2e-33
Identities = 79/208 (37%), Positives = 114/208 (53%), Gaps = 5/208 (2%)
Query: 1 VSDNGMQFASNQTKEFCEEMGIQRRFSSVEHPQTNGQADSANKVIQQGLKRP----LSEA 56
++DNG QF S ++C++MGI+ F+S HP++NGQ + AN I +GLK L +
Sbjct: 1406 ITDNGTQFTSELFGDYCDDMGIKLCFASPAHPKSNGQVERANAEILKGLKTKTYNVLKKH 1465
Query: 57 KGAWLDELPIVFWSYNTTQHSTTGKTPFRMTYGADVMLPVEIDNSSWRTTPKFEGENSSN 116
+WL+ELP V W TT TG+TPF + YGA+ +LP E+ S R E
Sbjct: 1466 GDSWLEELPTVLWENRTTPSRATGETPFFLVYGAEAVLPSELSLGSPRVVLYNEANQDDL 1525
Query: 117 MAVELDLLSETHNEARLKEAAMKQRAAAKYDTKVKPREMQEGDLVLKKRTGVTG-NKLSP 175
+LD L E A L+ A +Q + V+ R +Q GDLVL++ G +KLSP
Sbjct: 1526 CRDDLDYLEEQRRGAALRAARYQQSLRRYHQRHVRARSLQVGDLVLRRVQSRLGLSKLSP 1585
Query: 176 IWEGPYRILKALGRGAYHLESLDGKRVP 203
+WEGPY+++K G+ L DG +P
Sbjct: 1586 MWEGPYKVIKVPRPGSVRLTMEDGTELP 1613
>gb|AAP44696.1| putative GAG-POL precursor [Oryza sativa (japonica cultivar-group)]
gi|50918507|ref|XP_469650.1| putative GAG-POL precursor
[Oryza sativa (japonica cultivar-group)]
Length = 1987
Score = 143 bits (360), Expect = 4e-33
Identities = 79/208 (37%), Positives = 117/208 (55%), Gaps = 5/208 (2%)
Query: 1 VSDNGMQFASNQTKEFCEEMGIQRRFSSVEHPQTNGQADSANKVIQQGLKRP----LSEA 56
++DNG QF S ++CE+MGI+ F+S HP++NGQ + AN I +GLK L +
Sbjct: 1767 ITDNGTQFTSELFGDYCEDMGIKLCFTSPAHPRSNGQVERANAEILRGLKTKTFNILKKN 1826
Query: 57 KGAWLDELPIVFWSYNTTQHSTTGKTPFRMTYGADVMLPVEIDNSSWRTTPKFEGENSSN 116
+W++ELP V W+ TT TG+TPF + YGA+V+LP E+ S R T E +
Sbjct: 1827 DDSWIEELPAVLWANRTTPSRATGETPFFLVYGAEVVLPSELTLRSPRATMYCEADQDQL 1886
Query: 117 MAVELDLLSETHNEARLKEAAMKQRAAAKYDTKVKPREMQEGDLVLKK-RTGVTGNKLSP 175
+LD L E A L+ A +Q + V+ R + DLVL++ +T +KLSP
Sbjct: 1887 RRDDLDYLEERRRRAALRAARYQQSLRRYHQRHVRARSLCVDDLVLRRVQTRAGLSKLSP 1946
Query: 176 IWEGPYRILKALGRGAYHLESLDGKRVP 203
+WEGPYR++ G+ L + DG +P
Sbjct: 1947 MWEGPYRVIGVPRPGSVRLATGDGTELP 1974
>ref|XP_471208.1| OSJNBa0070D17.11 [Oryza sativa (japonica cultivar-group)]
gi|38347370|emb|CAE04960.2| OSJNBa0070D17.11 [Oryza
sativa (japonica cultivar-group)]
Length = 1646
Score = 143 bits (360), Expect = 4e-33
Identities = 78/208 (37%), Positives = 117/208 (55%), Gaps = 5/208 (2%)
Query: 1 VSDNGMQFASNQTKEFCEEMGIQRRFSSVEHPQTNGQADSANKVIQQGLKRP----LSEA 56
++DNG QF S ++CE+MGI+ F+S HP++NGQ + AN I +GL+ L +
Sbjct: 1426 ITDNGTQFTSELFGDYCEDMGIKLCFASPAHPRSNGQVERANAEILKGLETKTFNILKKH 1485
Query: 57 KGAWLDELPIVFWSYNTTQHSTTGKTPFRMTYGADVMLPVEIDNSSWRTTPKFEGENSSN 116
+W++ELP+V W+ TT TG+TPF + YGA+ +LP E+ S R T E +
Sbjct: 1486 GDSWIEELPVVLWANRTTPSRATGETPFFLVYGAEAVLPSELTLGSPRATMYCEADQDQL 1545
Query: 117 MAVELDLLSETHNEARLKEAAMKQRAAAKYDTKVKPREMQEGDLVLKK-RTGVTGNKLSP 175
+LD L E A L+ A +Q + V+ R + GDLVL++ +T +KLSP
Sbjct: 1546 RRDDLDYLEERRRRAALRAARYQQSLRRYHQHHVRARSLCVGDLVLRRVQTRAGLSKLSP 1605
Query: 176 IWEGPYRILKALGRGAYHLESLDGKRVP 203
+WEGPYR++ G+ L DG +P
Sbjct: 1606 MWEGPYRVIGVPRPGSVRLAMGDGTELP 1633
>emb|CAE06012.3| OSJNBa0016O02.22 [Oryza sativa (japonica cultivar-group)]
gi|50924956|ref|XP_472817.1| OSJNBa0016O02.22 [Oryza
sativa (japonica cultivar-group)]
Length = 2027
Score = 143 bits (360), Expect = 4e-33
Identities = 78/208 (37%), Positives = 118/208 (56%), Gaps = 5/208 (2%)
Query: 1 VSDNGMQFASNQTKEFCEEMGIQRRFSSVEHPQTNGQADSANKVIQQGLKRP----LSEA 56
++DNG QF S ++CE+MGI+ F+S HP++NGQ + AN I +GLK L +
Sbjct: 1807 ITDNGTQFTSELFGDYCEDMGIKLCFASPAHPRSNGQVERANAEILKGLKTKTFNILKKH 1866
Query: 57 KGAWLDELPIVFWSYNTTQHSTTGKTPFRMTYGADVMLPVEIDNSSWRTTPKFEGENSSN 116
+W++ELP V W+ TT TG+TPF + YGA+ +LP E+ S R T E + +
Sbjct: 1867 GNSWIEELPAVLWANRTTPSRATGETPFFLVYGAEAVLPSELTLRSPRATMYCEADQNQL 1926
Query: 117 MAVELDLLSETHNEARLKEAAMKQRAAAKYDTKVKPREMQEGDLVLKK-RTGVTGNKLSP 175
+LD L E A L+ A +Q + V+ R + DLVL++ +T +KLSP
Sbjct: 1927 RRDDLDYLEERRRRAALRAARYQQSLRRYHQHHVRARSLCVDDLVLRRVQTRAGLSKLSP 1986
Query: 176 IWEGPYRILKALGRGAYHLESLDGKRVP 203
+WEGPYR++ G++ L + DG +P
Sbjct: 1987 MWEGPYRVIGVPRPGSFRLATGDGTELP 2014
>gb|AAU10826.1| putative polyprotein [Oryza sativa (japonica cultivar-group)]
Length = 1970
Score = 143 bits (360), Expect = 4e-33
Identities = 79/208 (37%), Positives = 117/208 (55%), Gaps = 5/208 (2%)
Query: 1 VSDNGMQFASNQTKEFCEEMGIQRRFSSVEHPQTNGQADSANKVIQQGLKRP----LSEA 56
++DNG QF S ++CE+MGI+ F+S HP++NGQ + AN I +GLK L +
Sbjct: 1750 ITDNGTQFTSELFGDYCEDMGIKLCFASPAHPRSNGQVERANAEILRGLKTKTFNILKKH 1809
Query: 57 KGAWLDELPIVFWSYNTTQHSTTGKTPFRMTYGADVMLPVEIDNSSWRTTPKFEGENSSN 116
+W++ELP V W+ TT TG+TPF + YGA+ +LP E+ SS R T E +
Sbjct: 1810 GDSWIEELPAVLWANRTTPSRATGETPFFLVYGAEAVLPSELTLSSPRATMYCEADQDQL 1869
Query: 117 MAVELDLLSETHNEARLKEAAMKQRAAAKYDTKVKPREMQEGDLVLKK-RTGVTGNKLSP 175
+LD L E A L+ A +Q + V+ R + DLVL++ +T +KLSP
Sbjct: 1870 RRDDLDYLEERRRRAALRAARYQQSLRRYHQRHVRARSLCVDDLVLRRVQTRAGLSKLSP 1929
Query: 176 IWEGPYRILKALGRGAYHLESLDGKRVP 203
+WEGPYR++ G+ L + DG +P
Sbjct: 1930 MWEGPYRVIGVPRPGSVRLATGDGTELP 1957
>emb|CAD40172.2| OSJNBa0061A09.11 [Oryza sativa (japonica cultivar-group)]
gi|50921873|ref|XP_471297.1| OSJNBa0061A09.11 [Oryza
sativa (japonica cultivar-group)]
Length = 2030
Score = 142 bits (359), Expect = 5e-33
Identities = 78/208 (37%), Positives = 117/208 (55%), Gaps = 5/208 (2%)
Query: 1 VSDNGMQFASNQTKEFCEEMGIQRRFSSVEHPQTNGQADSANKVIQQGLKRP----LSEA 56
++DNG QF S ++CE+MGI+ F+S HP++NGQ + AN I +GLK L +
Sbjct: 1810 ITDNGTQFTSELFGDYCEDMGIKLCFASPAHPESNGQVERANAEILKGLKTKTFNILKKH 1869
Query: 57 KGAWLDELPIVFWSYNTTQHSTTGKTPFRMTYGADVMLPVEIDNSSWRTTPKFEGENSSN 116
+W++ELP V W+ TT TG+TPF + YGA+ +LP E+ S R T E +
Sbjct: 1870 GDSWIEELPAVLWANRTTPSRATGETPFFLVYGAEAVLPSELTLKSPRATMYCEADQDQL 1929
Query: 117 MAVELDLLSETHNEARLKEAAMKQRAAAKYDTKVKPREMQEGDLVLKK-RTGVTGNKLSP 175
+LD L E A L+ A +Q + V+ R + DLVL++ +T +KLSP
Sbjct: 1930 RRDDLDYLEERRRRAALRAARYQQSLRRYHQRHVRARSLCVDDLVLRRVQTRAGLSKLSP 1989
Query: 176 IWEGPYRILKALGRGAYHLESLDGKRVP 203
+WEGPYR++ G+ L++ DG +P
Sbjct: 1990 MWEGPYRVVGVPRPGSIRLDTGDGTELP 2017
>gb|AAO66535.1| transposon protein, putative, unclassified [Oryza sativa (japonica
cultivar-group)] gi|50920157|ref|XP_470439.1| putative
polyprotein [Oryza sativa (japonica cultivar-group)]
Length = 2026
Score = 142 bits (359), Expect = 5e-33
Identities = 78/208 (37%), Positives = 117/208 (55%), Gaps = 5/208 (2%)
Query: 1 VSDNGMQFASNQTKEFCEEMGIQRRFSSVEHPQTNGQADSANKVIQQGLKRP----LSEA 56
++DNG QF S ++CE+MGI+ F+S HP++NGQ + AN I +GLK L +
Sbjct: 1806 ITDNGTQFTSELFGDYCEDMGIKLCFASPAHPRSNGQVERANAEILKGLKTKTFNILKKH 1865
Query: 57 KGAWLDELPIVFWSYNTTQHSTTGKTPFRMTYGADVMLPVEIDNSSWRTTPKFEGENSSN 116
+W++ELP+V W+ TT TG+TPF + YGA+ +LP E+ S R T E +
Sbjct: 1866 GDSWIEELPVVLWANRTTPSRATGETPFFLVYGAEAVLPSELTLRSPRATMYCEADQDQL 1925
Query: 117 MAVELDLLSETHNEARLKEAAMKQRAAAKYDTKVKPREMQEGDLVLKK-RTGVTGNKLSP 175
+LD L E A L+ A +Q + V+ R + DLVL++ +T +KLSP
Sbjct: 1926 RRDDLDYLEERRRRAALRAARYQQSLRRYHQRHVRARSLCVDDLVLRRVQTRAGLSKLSP 1985
Query: 176 IWEGPYRILKALGRGAYHLESLDGKRVP 203
+WEGPYR++ G+ L + DG +P
Sbjct: 1986 MWEGPYRVIGVPRPGSVRLATGDGTELP 2013
>emb|CAE03705.3| OSJNBb0034G17.13 [Oryza sativa (japonica cultivar-group)]
gi|50927717|ref|XP_473422.1| OSJNBb0034G17.13 [Oryza
sativa (japonica cultivar-group)]
Length = 787
Score = 142 bits (359), Expect = 5e-33
Identities = 78/208 (37%), Positives = 116/208 (55%), Gaps = 5/208 (2%)
Query: 1 VSDNGMQFASNQTKEFCEEMGIQRRFSSVEHPQTNGQADSANKVIQQGLKRP----LSEA 56
++DNG QF S ++CE+MGI+ F+S HP++NGQ + AN I +GLK L +
Sbjct: 567 ITDNGTQFTSELFGDYCEDMGIKLCFASPAHPRSNGQVERANAEILKGLKTKTFNILKKH 626
Query: 57 KGAWLDELPIVFWSYNTTQHSTTGKTPFRMTYGADVMLPVEIDNSSWRTTPKFEGENSSN 116
+W++ELP V W+ TT TG+TPF + YGA+ +LP E+ S R T E +
Sbjct: 627 GDSWIEELPAVLWANRTTPSRATGETPFFLVYGAEAVLPFELTLRSPRATMYCEADQDQL 686
Query: 117 MAVELDLLSETHNEARLKEAAMKQRAAAKYDTKVKPREMQEGDLVLKK-RTGVTGNKLSP 175
+LD L E A L+ A +Q + V+ R + DLVL++ +T +KLSP
Sbjct: 687 CRDDLDYLEERRRRAALRAARYQQSLRRYHQRHVRARSLCVDDLVLRRVQTRAGLSKLSP 746
Query: 176 IWEGPYRILKALGRGAYHLESLDGKRVP 203
+WEGPYR++ G+ L + DG +P
Sbjct: 747 MWEGPYRVIGVPRPGSVRLATADGTELP 774
>emb|CAE03073.3| OSJNBa0089E12.11 [Oryza sativa (japonica cultivar-group)]
Length = 1370
Score = 142 bits (359), Expect = 5e-33
Identities = 78/208 (37%), Positives = 117/208 (55%), Gaps = 5/208 (2%)
Query: 1 VSDNGMQFASNQTKEFCEEMGIQRRFSSVEHPQTNGQADSANKVIQQGLKRP----LSEA 56
++DNG QF S ++CE+MGI+ F+S HP++NGQ + AN I +GLK L +
Sbjct: 1150 ITDNGTQFTSELFGDYCEDMGIKLCFASPAHPRSNGQVERANAEILRGLKTKTFNILKKH 1209
Query: 57 KGAWLDELPIVFWSYNTTQHSTTGKTPFRMTYGADVMLPVEIDNSSWRTTPKFEGENSSN 116
+W++ELP+V W+ TT TG+TPF + YGA+ +LP E+ S R T E +
Sbjct: 1210 GDSWIEELPVVLWANRTTPSRATGETPFFLVYGAEAVLPSELTLRSPRATMYCEADQDQL 1269
Query: 117 MAVELDLLSETHNEARLKEAAMKQRAAAKYDTKVKPREMQEGDLVLKK-RTGVTGNKLSP 175
+LD L E A L+ A +Q + V+ R + DLVL++ +T +KLSP
Sbjct: 1270 RRDDLDYLEERRQRAALRAARYQQSLRRYHQCHVRARSLCVDDLVLRRVQTRAGLSKLSP 1329
Query: 176 IWEGPYRILKALGRGAYHLESLDGKRVP 203
+WEGPYR++ G+ L + DG +P
Sbjct: 1330 MWEGPYRVIGVPWPGSVRLATGDGTELP 1357
>gb|AAU44223.1| putative polyprotein [Oryza sativa (japonica cultivar-group)]
Length = 1823
Score = 142 bits (359), Expect = 5e-33
Identities = 79/210 (37%), Positives = 117/210 (55%), Gaps = 5/210 (2%)
Query: 1 VSDNGMQFASNQTKEFCEEMGIQRRFSSVEHPQTNGQADSANKVIQQGLKRP----LSEA 56
++DNG QF S ++CE+MGI+ F+S HP +NGQ + AN I +GLK L +
Sbjct: 1603 ITDNGTQFTSELFGDYCEDMGIKLCFASPAHPGSNGQVERANAEILKGLKTKTFNILKKH 1662
Query: 57 KGAWLDELPIVFWSYNTTQHSTTGKTPFRMTYGADVMLPVEIDNSSWRTTPKFEGENSSN 116
+W++ELP V W+ TT TG+TPF + YGA+ +LP E+ S R T E + +
Sbjct: 1663 GDSWIEELPAVLWANRTTPSRATGETPFFLVYGAEAVLPSELTLRSPRATMYCEADQDQH 1722
Query: 117 MAVELDLLSETHNEARLKEAAMKQRAAAKYDTKVKPREMQEGDLVLKK-RTGVTGNKLSP 175
+LD L E A L+ A +Q + V+ R + DLVL++ +T +KLSP
Sbjct: 1723 RRDDLDYLEERRRRAALRVARYQQSLRRYHQRHVRARSLCVDDLVLRRVQTRAGLSKLSP 1782
Query: 176 IWEGPYRILKALGRGAYHLESLDGKRVPRS 205
+WEGPYR++ G+ L + DG +P S
Sbjct: 1783 MWEGPYRVIGVPRPGSVRLATGDGTELPNS 1812
>gb|AAP52619.1| putative gag-pol precursor [Oryza sativa (japonica cultivar-group)]
gi|37532060|ref|NP_920332.1| putative gag-pol precursor
[Oryza sativa (japonica cultivar-group)]
gi|62733623|gb|AAX95740.1| RNase H, putative [Oryza
sativa (japonica cultivar-group)]
Length = 2025
Score = 142 bits (358), Expect = 6e-33
Identities = 79/208 (37%), Positives = 116/208 (54%), Gaps = 5/208 (2%)
Query: 1 VSDNGMQFASNQTKEFCEEMGIQRRFSSVEHPQTNGQADSANKVIQQGLKRP----LSEA 56
++DNG QF S +FCE+MGI+ F+S HP++NGQ + AN I +GLK L +
Sbjct: 1805 ITDNGTQFTSELFGDFCEDMGIKLCFASPAHPRSNGQVERANAEILKGLKTKTFNILKKH 1864
Query: 57 KGAWLDELPIVFWSYNTTQHSTTGKTPFRMTYGADVMLPVEIDNSSWRTTPKFEGENSSN 116
+W++ELP V W+ TT TG+TPF + YGA+ +LP E+ S R T E +
Sbjct: 1865 GDSWIEELPAVLWANRTTPSRATGETPFFLVYGAEAVLPSELTLRSPRATMYCEADQDQL 1924
Query: 117 MAVELDLLSETHNEARLKEAAMKQRAAAKYDTKVKPREMQEGDLVLKK-RTGVTGNKLSP 175
+LD L E A L+ A +Q + V+ R + DLVL++ +T +KLSP
Sbjct: 1925 RRDDLDYLEERRRRAALRAARYQQSLRRYHQRHVRARSLCVDDLVLRRVQTRAGLSKLSP 1984
Query: 176 IWEGPYRILKALGRGAYHLESLDGKRVP 203
+WEGPYR++ G+ L + DG +P
Sbjct: 1985 MWEGPYRVIGVPRPGSVRLATGDGTELP 2012
>gb|AAP52617.1| putative polyprotein [Oryza sativa (japonica cultivar-group)]
gi|37532056|ref|NP_920330.1| putative polyprotein [Oryza
sativa (japonica cultivar-group)]
gi|62733621|gb|AAX95738.1| Integrase core domain,
putative [Oryza sativa (japonica cultivar-group)]
Length = 503
Score = 142 bits (358), Expect = 6e-33
Identities = 79/208 (37%), Positives = 116/208 (54%), Gaps = 5/208 (2%)
Query: 1 VSDNGMQFASNQTKEFCEEMGIQRRFSSVEHPQTNGQADSANKVIQQGLKRP----LSEA 56
++DNG QF S +FCE+MGI+ F+S HP++NGQ + AN I +GLK L +
Sbjct: 283 ITDNGTQFTSELFGDFCEDMGIKLCFASPAHPRSNGQVERANAEILKGLKTKTFNILKKH 342
Query: 57 KGAWLDELPIVFWSYNTTQHSTTGKTPFRMTYGADVMLPVEIDNSSWRTTPKFEGENSSN 116
+W++ELP V W+ TT TG+TPF + YGA+ +LP E+ S R T E +
Sbjct: 343 GDSWIEELPAVLWANRTTPSRATGETPFFLVYGAEAVLPSELTLRSPRATMYCEADQDQL 402
Query: 117 MAVELDLLSETHNEARLKEAAMKQRAAAKYDTKVKPREMQEGDLVLKK-RTGVTGNKLSP 175
+LD L E A L+ A +Q + V+ R + DLVL++ +T +KLSP
Sbjct: 403 RRDDLDYLEERRRRAALRAARYQQSLRRYHQRHVRARSLCVDDLVLRRVQTRAGLSKLSP 462
Query: 176 IWEGPYRILKALGRGAYHLESLDGKRVP 203
+WEGPYR++ G+ L + DG +P
Sbjct: 463 MWEGPYRVIGVPRPGSVRLATGDGTELP 490
Database: nr
Posted date: Jul 5, 2005 12:34 AM
Number of letters in database: 863,360,394
Number of sequences in database: 2,540,612
Lambda K H
0.317 0.131 0.386
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 356,355,640
Number of Sequences: 2540612
Number of extensions: 14175605
Number of successful extensions: 39349
Number of sequences better than 10.0: 3255
Number of HSP's better than 10.0 without gapping: 2994
Number of HSP's successfully gapped in prelim test: 261
Number of HSP's that attempted gapping in prelim test: 34099
Number of HSP's gapped (non-prelim): 3952
length of query: 214
length of database: 863,360,394
effective HSP length: 123
effective length of query: 91
effective length of database: 550,865,118
effective search space: 50128725738
effective search space used: 50128725738
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 72 (32.3 bits)
Lotus: description of TM0189.9