BLAST2 result
BLASTP 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TM0189.12
(963 letters)
Database: nr
2,540,612 sequences; 863,360,394 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_463537.1| putative polyprotein [Oryza sativa (japonica cu... 669 0.0
gb|AAP53546.1| putative retroelement [Oryza sativa (japonica cul... 532 e-149
gb|AAR13317.1| gag-pol polyprotein [Phaseolus vulgaris] 509 e-142
gb|AAX96424.1| retrotransposon protein, putative, Ty3-gypsy sub-... 457 e-126
gb|AAF79618.1| F5M15.26 [Arabidopsis thaliana] gi|25402907|pir||... 423 e-116
gb|AAL76007.1| prpol [Zea mays] 409 e-112
gb|AAD11615.1| prpol [Zea mays] gi|7489805|pir||T14595 polyprote... 405 e-111
emb|CAD40359.2| OSJNBa0093P23.5 [Oryza sativa (japonica cultivar... 403 e-110
gb|AAP52706.1| putative polyprotein [Oryza sativa (japonica cult... 392 e-107
gb|AAL66756.1| putative prpol [Zea mays] 389 e-106
ref|XP_474845.1| OSJNBa0035O13.3 [Oryza sativa (japonica cultiva... 385 e-105
ref|XP_469384.1| putative polyprotein [Oryza sativa (japonica cu... 385 e-105
emb|CAE04320.1| OSJNBb0016D16.11 [Oryza sativa (japonica cultiva... 384 e-105
ref|XP_470757.1| putative gag-pol precursor [Oryza sativa] gi|18... 384 e-105
ref|XP_475035.1| OSJNBa0042F21.5 [Oryza sativa (japonica cultiva... 383 e-104
gb|AAP52913.1| putative retroelement [Oryza sativa (japonica cul... 382 e-104
ref|XP_474675.1| OSJNBa0027O01.4 [Oryza sativa (japonica cultiva... 382 e-104
ref|XP_462713.1| OSJNBa0079F16.18 [Oryza sativa (japonica cultiv... 382 e-104
gb|AAN04936.1| Putative retroelement [Oryza sativa (japonica cul... 382 e-104
ref|NP_918169.1| putative gag-pol polyprotein [Oryza sativa (jap... 382 e-104
>ref|XP_463537.1| putative polyprotein [Oryza sativa (japonica cultivar-group)]
Length = 2001
Score = 669 bits (1726), Expect = 0.0
Identities = 369/975 (37%), Positives = 566/975 (57%), Gaps = 34/975 (3%)
Query: 1 QVWVKDALDLDTTFGEEENARTLSVKYLILETEGSYNMIIGRITLNRLCAVISTAQLAVK 60
QV + L FG+ N R + + +++ YN I+GR T+N A+I + +K
Sbjct: 830 QVHAIGKISLQVVFGKGTNVRKEEIVFDVVDMPYQYNAILGRSTINIFEAIIHHNYICMK 889
Query: 61 YPLSNGHIGGIVVDQRIARECYCNAVDRYGKKNASVGHRCSEVETPEESLDPRGEG-RVN 119
P G I V +++A Y + G + H + + GE ++
Sbjct: 890 LPGLRGVI--TVRGEQLAARKY----ELQGTPSVKGVHVVDQKQ---------GEYIKIQ 934
Query: 120 RPTPIEETKDLKFGE----KILKIGTKLSEEQEQRISKLLGDNLDLFAWSHKYMPGIDPN 175
+P P +TK ++ E K + IG L + E+ I K++ +N+ +FAWS + G+D +
Sbjct: 935 KPIPEGKTKKVQLDEHNPGKFILIGENLEKHIEEEILKVVKENMAVFAWSPDELQGVDRS 994
Query: 176 FICHRLALNPGVEPITQTRRRMGNEKEKAIQQEVNKLLAADFIREIKYPTWLVNVVIVKK 235
I H LA+ G +P Q RRM ++++A + E+ KLL A IRE+ +P WL N V+VKK
Sbjct: 995 LIEHNLAIKSGYKPKKQKLRRMSTDRQQAAKIELEKLLKAKVIREVMHPEWLANPVLVKK 1054
Query: 236 ANGKWRMCVDNTDLNKTCPKDSYPLPSIDKLVDGALGNELLSLMDAYSGYHQIKMHQSDE 295
ANGKWRMC+D TDLNK CPKD +PLP ID+LVD G EL+S +DAYSGYHQ+ M + DE
Sbjct: 1055 ANGKWRMCIDFTDLNKACPKDDFPLPRIDQLVDATAGCELMSFLDAYSGYHQVFMVKEDE 1114
Query: 296 DKTTFMTARVNYCYQTMPFGLKNAGATYQRLMDRVFEGQVGRNMEVYVDDMIVKSVLGSN 355
+KT+F+T YC+ MPFGLKNAGAT+ RL+ +V Q+GRN+E Y+DD++VKS
Sbjct: 1115 EKTSFITPFGTYCFIRMPFGLKNAGATFARLIGKVLAKQLGRNVEAYIDDIVVKSKQAFT 1174
Query: 356 HHEDLMEAFGRIQKHNMRLNPEKCSFGIRGGKFLGFLITSRRIEINPDKCKAIQEMKSPS 415
H +DL E F ++K +++LNPEKC FG+R GK LGFL++ R IE NPDK AI +M+ P
Sbjct: 1175 HGKDLQETFENLRKCSVKLNPEKCVFGVRAGKLLGFLVSKRGIEANPDKIAAIHQMEPPK 1234
Query: 416 NVKEVQRLIGRITALSRFLLHSGDKSAPFIKCLKKNTTFEWNSECEEAFTRLKEMLSAPP 475
N +EVQRL GR+ +LSRFL S +K PF K L+ TFEW +EC++AF LK+ L P
Sbjct: 1235 NTREVQRLTGRMASLSRFLSKSAEKGLPFFKTLRGANTFEWTAECQQAFDDLKKYLHEMP 1294
Query: 476 VLSKPVQGLPLHLYFSVGDHAISSVILQEVDGEQKIVYFVSYHFRGRRSGIRR*KKRCSP 535
L+ P +G PL +Y + +S+V++QE + Q VYFVS +G ++ +K
Sbjct: 1295 TLASPPKGQPLLMYVAATPATVSAVLVQEEENRQVPVYFVSEALQGPKTRYSEVEKLIYA 1354
Query: 536 SSSPPDAYDRIFKAFR*K*ELTFL*DRCCRSQTFQEGSSR-DQWSCRNMDCSMTKGGRST 594
F + + T +E + R +W+ + + R T
Sbjct: 1355 IVMASRKLRHYFLSHDITIPSAY---PIGEVLTNKEVAGRIAKWAMELLPFDLKYISR-T 1410
Query: 595 HIP*QI---FLVELTP---EEGEKVSTQWILFVDGSSNDNGSEAGVTLQGPGELVLEQSL 648
I Q+ F+ E TP E+ E+V WI+F DG+ N G+ A ++ P + L+ S+
Sbjct: 1411 AIKSQVLADFVAEWTPNEVEQQEEVKKPWIVFSDGACNAAGAGAAAVVKTPMKQTLKYSV 1470
Query: 649 RFQFKTSNNQAEYEALIAGLKLAIEVQIDSLPVRTDSPLVANQVNGEFQVKELALIKYVE 708
+ F ++NN AEYE ++ ++ A + L V+TDS LVA + F+ KE + KY+E
Sbjct: 1471 QLVFPSTNNTAEYEGVLLAMRKARALGARRLIVKTDSKLVAGHFSKSFEAKEETMAKYLE 1530
Query: 709 RVRLLMGRLQQVVVEFVPRAQNQRADALAKLASTRKPGNNRSVIQETLANPNIEGEFVAS 768
RL + V+ + R +N AD LAK A+T +P N + + P+ E + VA
Sbjct: 1531 EARLNEKHFLGITVKAITREENGEADELAKAAATGQPLENS--FFDIITQPSYEKKEVAC 1588
Query: 769 VDRQETWMNPIID-ILAGEPSDVVKYSKAQRREAGHYTLLDGILFRRGFSSPLLRCLPPE 827
+ R+ W PI+ +++ + + + +K + + Y +++G L++ G ++PLL+C+ E
Sbjct: 1589 IQREGDWREPILKYLVSAQLPEKEEEAKRIQLMSKKYKVVEGQLYKSGVTAPLLKCVTRE 1648
Query: 828 KYEAVMTEVHEGVCASHIGGRSLASKVLRAGFYWPTIRKECAEFVRKCKKCQVFTDLPRA 887
+ ++ E+HEG+C +H S+ASKV+R G YWPTI K+ ++++ CK CQ F + +A
Sbjct: 1649 EGMKMVVEIHEGLCGAHQAPWSVASKVIRQGIYWPTIMKDTEKYIKTCKACQKFGPMTKA 1708
Query: 888 PPGQLVTISSPWPFAMWGVDLVGPFPTARSQMKFILVAVDYFTKWVEAEPLASITAAKII 947
PP +L I WPF WG+D+VGP P A+ ++F++VA++YF++W+EAE +A IT+A +
Sbjct: 1709 PPKELQPIPPVWPFYRWGIDIVGPLPRAKGDLRFVIVAIEYFSRWIEAEAVARITSAAVQ 1768
Query: 948 SFYWKRIVCRFGVPR 962
F WK I+CRFG+P+
Sbjct: 1769 KFVWKNIICRFGIPK 1783
>gb|AAP53546.1| putative retroelement [Oryza sativa (japonica cultivar-group)]
gi|37533914|ref|NP_921259.1| putative retroelement [Oryza
sativa (japonica cultivar-group)]
gi|14018058|gb|AAK52121.1| Putative retroelement [Oryza
sativa]
Length = 2079
Score = 532 bits (1370), Expect = e-149
Identities = 334/983 (33%), Positives = 501/983 (49%), Gaps = 71/983 (7%)
Query: 8 LDLDTTFGEEENARTLSVKYLILETEGSYNMIIGRITLNRLCAVISTAQLAVKYPLSNGH 67
+ L TFG+ N RT + + + E + +YN IIGR L + A A +K P G
Sbjct: 934 ITLPVTFGQANNFRTEQITFDVAEFDTAYNAIIGRTALAKFVAASHYAYQVLKMPGPKGT 993
Query: 68 IGGIVVDQRIARECYCNAVDRYGKKNASVGHRCSEVETPEESLDPRGEGRVNRPTPIEET 127
I I + ++A +C ++D + TP + +P + R TP
Sbjct: 994 IT-IQGNAKLAVQCDKRSLDMV-----------EQTPTPPATSEPPKKVRKPNKTPKPNG 1041
Query: 128 KDLKFGEKILKIGTKLSEEQEQRISKLLGDNLDLFAWSHKYMPGIDPNFICHRLALNPGV 187
KI+ + + ++ E + L DN D+FAW MPG+ I H+L + P
Sbjct: 1042 -----AVKIVPLSSANPDKNELALIAFLRDNADVFAWQPSDMPGVPREVIEHKLMVRPDA 1096
Query: 188 EPITQTRRRMGNEKEKAIQQEVNKLLAADFIREIKYPTWLVNVVIVKKANGKWRMCVDNT 247
+P+ Q RR ++++AI++E++KLL A FIRE+ +P WL N VIV+KANGKWRMCVD T
Sbjct: 1097 KPVKQRLRRFAPDRKQAIREELDKLLKAGFIREVLHPEWLANPVIVRKANGKWRMCVDFT 1156
Query: 248 DLNKTCPKDSYPLPSIDKLVDGALGNELLSLMDAYSGYHQIKMHQSDEDKTTFMTARVNY 307
DLNK CPKD +PLP ID+LV G ELLS +DAYSGYHQI M + DE+KT F+T +
Sbjct: 1157 DLNKACPKDHFPLPRIDQLVYSTAGCELLSFLDAYSGYHQISMVKEDEEKTAFITPFGVF 1216
Query: 308 CYQTMPFGLKNAGATYQRLMDRVFEGQVGRNMEVYVDDMIVKSVLGSNHHEDLMEAFGRI 367
C+ MPFGL AG T+QR + G N+E YVD ++VK+ + +DL E F +
Sbjct: 1217 CHVKMPFGLITAGNTFQRTL--------GNNVEAYVDGIVVKTKTSDSLIDDLRETFDNL 1268
Query: 368 QKHNMRLNPEKCSFGIRGGKFLGFLITSRRIEINPDKCKAIQEMKSPSNVKEVQRLIGRI 427
+++ + LNPEKC+FG+ GK LGFL++ R IE NP+K KAI+ MKSP+ +KEVQ+L G +
Sbjct: 1269 RRYRLMLNPEKCTFGVPSGKLLGFLVSGRGIEANPEKIKAIENMKSPTRLKEVQKLTGYM 1328
Query: 428 TALSRFLLHSGDKSAPFIKCLKKNTTFEWNSECEEAFTRLKEMLSAPPVLSKPVQGLPLH 487
ALSRF+ G++ PF LKK F W E +EAF LK LS PPVL P L
Sbjct: 1329 AALSRFVARIGEQGQPFFALLKKQDKFVWTQETKEAFITLKRYLSNPPVLVAPQPNEELF 1388
Query: 488 LYFSVGDHAISSVILQEVDGEQKIVYFVSYHFRGRRSGIRR*KKRCSPSSSPPDAYDRIF 547
LY + H++S VI+ E + Q+ VY+VS ++ + +K F
Sbjct: 1389 LYIAATPHSVSIVIVVEREKVQRPVYYVSEALHDAKTRYPQIQKLLYAIIMTSRKLRHYF 1448
Query: 548 KAFR*K*ELTFL*DRCCRSQTFQEGSSRDQWSCRNMDCSMTKGGRSTHIP*QI---FLVE 604
+A R +F R++ ++ D T I Q+ F+ +
Sbjct: 1449 QAHRVTIVSSFPLGEVVRNKDVVGRIAKWVVELSQFDVHFMP---QTAIKSQVLADFVAD 1505
Query: 605 LT----PEEGEKVSTQWILFVDGSSNDNGSEAGVTLQGPGELVLEQSLRFQFKTSNNQAE 660
T + + + W + DG+ N G+ AG+ L P + ++ F+ +NN AE
Sbjct: 1506 WTMPDNKSDNQGDNETWTMAFDGALNSQGAGAGLILTSPSGDQFKHAIHLNFRATNNTAE 1565
Query: 661 YEALIAGLKLAIEVQIDSLPVRTDSPLVANQVNGEFQVKELALIKYVERVRLLMGRLQQV 720
YE L+AG++ A + + L V+ DS LVANQV+ +++ L KY+ VR L R +
Sbjct: 1566 YEGLLAGIRAAAALGVKRLIVKGDSELVANQVHKDYKCSNPELSKYLAEVRKLEKRFDGI 1625
Query: 721 VVEFVPRAQNQRADALAKLASTRKPGNNRSVIQETLANPNIE---GEF------------ 765
V V R N D LA+ AS R+P + + + L P+++ GE
Sbjct: 1626 EVRHVYRKDNVEPDDLARRASRREPLEPDTFL-DVLTKPSVKEVSGEVVPSTPDISSDVI 1684
Query: 766 -----VASVDRQETWMNPIIDILAGE--PSDVVKYSKAQRREAGHYTLLDGILFRRGFSS 818
VA ++ + W P+I + E P + + K R+ A Y ++ L+++ +
Sbjct: 1685 EVERAVADIETTDDWRTPLIKFINSEELPENDTEAEKITRK-AKIYCMIGNDLYKKVPNG 1743
Query: 819 PLLRCLPPEKYEAVMTEVHEGVCASHIGGRSLASKVLRAGFYWPTIRKECAEFVRKCKKC 878
LL+C+ + ++ ++HEG+C SH GR+L K R GF+WPT K+ + C
Sbjct: 1744 ILLKCVSIDDGRQLLLDIHEGICGSHAVGRTLVGKAFRQGFFWPTALKDACDMQTHKATC 1803
Query: 879 QVFTDLPRAPPGQLVTISSPWPFAMWGVDLVGPFPTARSQMKFILVAVDYFTKWVEAEPL 938
++ P S + G PT +++ +VA+D FTKW+EA P
Sbjct: 1804 TSASNNP-----------SDLAVLVLGARYTWAIPTRTERLQIPIVAIDKFTKWIEASPT 1852
Query: 939 ASITAAKIISFYWKRIVCRFGVP 961
I A I F + I CR+G+P
Sbjct: 1853 GEIKADNAIKFI-RGIFCRYGLP 1874
>gb|AAR13317.1| gag-pol polyprotein [Phaseolus vulgaris]
Length = 1859
Score = 509 bits (1312), Expect = e-142
Identities = 252/535 (47%), Positives = 354/535 (66%), Gaps = 19/535 (3%)
Query: 1 QVWVKDALDLDTTFGEEENARTLSVKYLILETEGSYNMIIGRITLNRLCAVISTAQLAVK 60
+V K +DL TTFG++ ++T++++YL++ SYN+++GR ++NRL A++ST LA+K
Sbjct: 694 RVDTKGFIDLYTTFGDDYLSKTINIRYLLVNANTSYNILLGRPSINRLKAIVSTPHLAMK 753
Query: 61 YPLSNGHIGGIVVDQRIARECYCNAVDRYGKKNASVGHRCSEVETPEESLDPRGEGRVNR 120
+P NG I + +DQ+ ARECY ++ + E S + R GR +R
Sbjct: 754 FPSVNGDIATVHIDQKTARECYVASLKVEPTRRLYTTSAERTTERRGRSTERRSRGRESR 813
Query: 121 P--------TPIEETKDLKFGEKILKI-----------GTKLSEEQEQRISKLLGDNLDL 161
P + ++ GE + I GT L + + I K L N DL
Sbjct: 814 RHLVALVDLDPRLDDPRMEAGEDLQPIFLRDKDRKTYMGTSLKPDDRETIGKTLTKNADL 873
Query: 162 FAWSHKYMPGIDPNFICHRLALNPGVEPITQTRRRMGNEKEKAIQQEVNKLLAADFIREI 221
FAW+ MPG+ + I HRL++ PI Q +R++G E+ KA ++E +KL+ A FI++
Sbjct: 874 FAWTAADMPGVKSDVITHRLSVYTEARPIAQKKRKLGEERRKAAREETDKLIQAGFIQKA 933
Query: 222 KYPTWLVNVVIVKKANGKWRMCVDNTDLNKTCPKDSYPLPSIDKLVDGALGNELLSLMDA 281
Y TWL NVV+VKK NGKWRMCVD TDLNK CPKDSYPLP+ID+LVDGA G+++LS +DA
Sbjct: 934 HYTTWLANVVMVKKTNGKWRMCVDYTDLNKACPKDSYPLPTIDRLVDGAAGHQILSFLDA 993
Query: 282 YSGYHQIKMHQSDEDKTTFMTARVNYCYQTMPFGLKNAGATYQRLMDRVFEGQVGRNMEV 341
YSGY+QI+M+ D +KT F T N+ Y+ MPFGLKNAGATYQRLMD VF +GRN+EV
Sbjct: 994 YSGYNQIQMYHRDREKTAFRTDSDNFFYEVMPFGLKNAGATYQRLMDHVFHDMIGRNVEV 1053
Query: 342 YVDDMIVKSVLGSNHHEDLMEAFGRIQKHNMRLNPEKCSFGIRGGKFLGFLITSRRIEIN 401
YVDD++VKS H DL E F ++++ MRLNPEKC+FG+ GGKFLGF++T R IE N
Sbjct: 1054 YVDDIVVKSDSCEQHVSDLKEVFQALRQYRMRLNPEKCAFGVEGGKFLGFMLTHRGIEAN 1113
Query: 402 PDKCKAIQEMKSPSNVKEVQRLIGRITALSRFLLHSGDKSAPFIKCLKKNTTFEWNSECE 461
P+KCKAI EM+SP +KE+QRL+ R+T+LSRF+ +++ P IK LKK + FEW ECE
Sbjct: 1114 PEKCKAITEMRSPKGLKEIQRLVSRLTSLSRFVPKLAERTRPIIKLLKKTSKFEWTDECE 1173
Query: 462 EAFTRLKEMLSAPPVLSKPVQGLPLHLYFSVGDHAISSVILQEVDGEQKIVYFVS 516
+ F +LK L++PPV+ KP P+ +Y +V + A+SS ++QE+ E++ VYFVS
Sbjct: 1174 QNFQQLKAFLASPPVIQKPNAREPIVVYLAVSNEAVSSALVQEIKAEERPVYFVS 1228
Score = 324 bits (830), Expect = 1e-86
Identities = 162/362 (44%), Positives = 231/362 (63%), Gaps = 35/362 (9%)
Query: 601 FLVELTPEEGEKVSTQWILFVDGSSNDNGSEAGVTLQGPGELVLEQSLRFQFKTSNNQAE 660
F ELTP E+ + +W L+VDGSSN S AGV L+GPGE+V+EQ+++F+FKTSNNQAE
Sbjct: 1313 FTAELTPYLTER-TPRWTLYVDGSSNSRSSGAGVVLEGPGEIVVEQAMKFEFKTSNNQAE 1371
Query: 661 YEALIAGLKLAIEVQIDSLPVRTDSPLVANQVNGEFQVKELALIKYVERVRLLMGRLQQV 720
YEA+IAGL LAIE+++ ++ ++DS LV Q+ GE++V+E L +Y V+ L+ R +++
Sbjct: 1372 YEAIIAGLHLAIELEVTNITCKSDSRLVVGQLTGEYEVRETLLQQYFHFVKNLLNRFKEI 1431
Query: 721 VVEFVPRAQNQRADALAKLASTRKPGNNRSVIQETLANPNIEGEFVASVDRQETWMNPII 780
+ V R N RADAL++LA+ +K G +RS I TLA P++ E + D Q WM PI
Sbjct: 1432 SFQHVRRENNTRADALSRLATLKKKGAHRSAIHVTLAKPSVGTEECMATDTQPNWMTPIK 1491
Query: 781 DILAGEPSDVVKYSKAQRREAGHYTLLDGILFRRGFSSPLLRCLPPEKYEAVMTEVHEGV 840
L D K + +A Y L+ L+RRG+S PLL+CL PE+ VMTE+HEG+
Sbjct: 1492 QYLTDGVCD-PHLEKTMKLQAARYILIGEDLYRRGYSRPLLKCLGPEQVTYVMTELHEGI 1550
Query: 841 CASHIGGRSLASKVLRAGFYWPTIRKECAEFVRKCKKCQVFTDLPRAPPGQLVTISSPWP 900
C +H G R++++K+LRAG+YWPT++ +C E+
Sbjct: 1551 CGTHSGARTMSAKILRAGYYWPTLQGDCTEY----------------------------- 1581
Query: 901 FAMWGVDLVGPFPTARSQMKFILVAVDYFTKWVEAEPLASITAAKIISFYWKRIVCRFGV 960
G+D++GPF + Q KF+LV +DYFTKW+EAEPL +ITA + SF WK IVCRFG+
Sbjct: 1582 ----GMDIIGPFTPGKGQCKFLLVGIDYFTKWIEAEPLTAITARNVQSFVWKNIVCRFGL 1637
Query: 961 PR 962
P+
Sbjct: 1638 PQ 1639
>gb|AAX96424.1| retrotransposon protein, putative, Ty3-gypsy sub-class [Oryza sativa
(japonica cultivar-group)]
Length = 1587
Score = 457 bits (1175), Expect = e-126
Identities = 287/765 (37%), Positives = 411/765 (53%), Gaps = 59/765 (7%)
Query: 14 FGEEENARTLSVKYLILETEGSYNMIIGRITLNRLCAVISTAQLAVKYPLSNGHIGGIVV 73
FG EN R + + +++ +YN I GR TLN+ AV L +K P G I
Sbjct: 668 FGSGENGREEQILFDVVDIPYNYNAIFGRATLNKFEAVSHHNYLKLKMPSPAGVI----- 722
Query: 74 DQRIARECYCNAVDRYGKKNASVGHRCSEVETPEESLDPRGEGRVNRPTPIEETKDLKFG 133
+ + +A K + ++ +R V + E L R + N P P K
Sbjct: 723 ---VVKGLQSSAAS---KSDLAIINRA--VHSVETELHERPK---NTPKPTPHGKI---- 767
Query: 134 EKILKIGTKLSEEQEQRISKLLGDNLDLFAWSHKYMPGIDPNFICHRLALNPGVEPITQT 193
TK+ + +L N+D+FAWS + G+ + I H LA+ P ++P Q
Sbjct: 768 -------TKVQIDDADPTKLVLKKNIDIFAWSPDEVGGVPADLIMHDLAVKPDIKPRKQK 820
Query: 194 RRRMGNEKEKAIQQEVNKLLAADFIREIKYPTWLVNVVIVKKANGKWRMCVDNTDLNKTC 253
R+M ++++A + EV KLL A I+EI +P WL N V+V+K+NGKWRMCVD TDLNK C
Sbjct: 821 LRKMSADRQEAAKAEVQKLLRAGVIQEIDHPEWLANPVLVRKSNGKWRMCVDFTDLNKAC 880
Query: 254 PKDSYPLPSIDKLVDGALGNELLSLMDAYSGYHQIKMHQSDEDKTTFMTARVNYCYQTMP 313
PKD + LP ID+LVD G EL+S DAYSGYHQI M+ D KT+F+T +C+ MP
Sbjct: 881 PKDDFSLPRIDQLVDSTAGCELMSFQDAYSGYHQIHMNPLDIPKTSFITPFGTFCHLRMP 940
Query: 314 FGLKNAGATYQRLMDRVFEGQVGRNMEVYVDDMIVKSVLGSNHHEDLMEAFGRIQKHNMR 373
FGL+NAGAT+ RL+ +V Q+GRN+E YVDD++VKS +H DL E F ++ ++
Sbjct: 941 FGLRNAGATFARLVYKVLGKQLGRNVEAYVDDIVVKSRKAFDHAIDLQETFDSLRAAGIK 1000
Query: 374 LNPEKCSFGIRGGKFLGFLITSRRIEINPDKCKAIQEMKSPSNVKEVQRLIGRITALSRF 433
LNPEKC FG+ GK LGFL++ R IE+NP+K AIQ+MK PS+V EVQ+L GRI ALSRF
Sbjct: 1001 LNPEKCVFGVCIGKLLGFLVSERGIEVNPEKINAIQQMKPPSSVHEVQKLAGRIAALSRF 1060
Query: 434 LLHSGDKSAPFIKCLKKNTTFEWNSECEEAFTRLKEMLSAPPVLSKPVQGLPLHLYFSVG 493
L + +++ PF K L+ F W EC+ AF LK+ L +PP L P G L LY +
Sbjct: 1061 LSKAAERALPFFKTLRGTGKFNWTPECQAAFDELKQYLQSPPALISPPLGSELLLYLAAS 1120
Query: 494 DHAISSVILQEVDGEQKIVYFVSYHFRGRRSGIRR*KKRCSPSSSPPDAYDRIFKAFR*K 553
A+S ++QE + QK VYFVS +G K R + A + + R K
Sbjct: 1121 PVAVSVALVQETEFGQKPVYFVSEALQGA-------KTRYTEMEKLAYALYPLGEILRGK 1173
Query: 554 *ELTFL*DRCCRSQTFQEGSSRDQWSCRNMDCSMTKGGRSTHIP*QI---FLVELTP--- 607
E+T +W+ + RS I Q+ F+ E TP
Sbjct: 1174 -EVT---------------GRLSKWAAELSLFDLHFVARSA-IKSQVLADFVAEWTPVLA 1216
Query: 608 EEGEKVSTQWILFVDGSSNDNGSEAGVTLQGPGELVLEQSLRFQFKTSNNQAEYEALIAG 667
+ + W+++ DGS + G+ L P + + + R QF T+NN AEYEA++ G
Sbjct: 1217 PDTKPAEQFWVMYSDGSWSHRGAGVAAVLFSPNGVPIRYAARLQFDTTNNAAEYEAVLLG 1276
Query: 668 LKLAIEVQIDSLPVRTDSPLVANQVNGEFQVKELALIKYVERVRLLMGRLQQVVVEFVPR 727
L+ A + + L +RTDS LVA V+ F+ KE + +Y+E +R + + VE +P
Sbjct: 1277 LRKAKALGVRRLLIRTDSKLVAGHVDKSFEAKEEGMKRYLEAIRSMEKCFTGITVEHLPS 1336
Query: 728 AQNQRADALAKLASTRKPGNNRSVIQETLANPNIEGEFVASVDRQ 772
QN+ ADAL K A+ P ++ + E L P I EF+ +Q
Sbjct: 1337 GQNEEADALVKSAACGGP-HSPGIFFEVLHAP-IPKEFITDNGKQ 1379
>gb|AAF79618.1| F5M15.26 [Arabidopsis thaliana] gi|25402907|pir||H86337 protein
F5M15.26 [imported] - Arabidopsis thaliana
Length = 1838
Score = 423 bits (1088), Expect = e-116
Identities = 217/492 (44%), Positives = 308/492 (62%), Gaps = 32/492 (6%)
Query: 25 VKYLILETEGSYNMIIGRITLNRLCAVISTAQLAVKYPLSNGHIGGIVVDQRIARECYCN 84
VK++++ YN+I+G ++++ A+ ST VK+P NG + R +E
Sbjct: 692 VKFVVIGKPAVYNVILGTPWIHQMQAIPSTYHQCVKFPTHNG-----IFTLRAPKEA--- 743
Query: 85 AVDRYGKKNASVGHRCSEVETPEESLDPRGEGRVNRPTPIEETKDLKFGEKILKIGTKLS 144
+TP S + R I+E+ + + +G ++S
Sbjct: 744 -------------------KTPSRSYEESELCRTEMVN-IDESDPTR----CVGVGAEIS 779
Query: 145 EEQEQRISKLLGDNLDLFAWSHKYMPGIDPNFICHRLALNPGVEPITQTRRRMGNEKEKA 204
+ LL N FAWS + M GIDP H L ++P +P+ Q RR++G E+ +A
Sbjct: 780 PSIRLELIALLKRNSKTFAWSIEDMKGIDPAITAHELNVDPTFKPVKQKRRKLGPERARA 839
Query: 205 IQQEVNKLLAADFIREIKYPTWLVNVVIVKKANGKWRMCVDNTDLNKTCPKDSYPLPSID 264
+ +EV KLL A I E+KYP WL N V+VKK NGKWR+CVD TDLNK CPKDSYPLP ID
Sbjct: 840 VNEEVEKLLKAGQIIEVKYPEWLANPVVVKKKNGKWRVCVDYTDLNKACPKDSYPLPHID 899
Query: 265 KLVDGALGNELLSLMDAYSGYHQIKMHQSDEDKTTFMTARVNYCYQTMPFGLKNAGATYQ 324
+LV+ GN LLS MDA+SGY+QI MH+ D++KT+F+T R YCY+ M FGLKNAGATYQ
Sbjct: 900 RLVEATSGNGLLSFMDAFSGYNQILMHKDDQEKTSFVTDRGTYCYKVMSFGLKNAGATYQ 959
Query: 325 RLMDRVFEGQVGRNMEVYVDDMIVKSVLGSNHHEDLMEAFGRIQKHNMRLNPEKCSFGIR 384
R ++++ Q+GR +EVY+DDM+VKS+ +H E L + F + + M+LNP KC+FG+
Sbjct: 960 RFVNKMLADQIGRTVEVYIDDMLVKSLKPEDHVEHLSKCFDVLNTYGMKLNPTKCTFGVT 1019
Query: 385 GGKFLGFLITSRRIEINPDKCKAIQEMKSPSNVKEVQRLIGRITALSRFLLHSGDKSAPF 444
G+FLG+++T R IE NP + +AI E+ SP N +EVQRL GRI AL+RF+ S DK PF
Sbjct: 1020 SGEFLGYVVTKRGIEANPKQIRAILELPSPRNAREVQRLTGRIAALNRFISRSTDKCLPF 1079
Query: 445 IKCLKKNTTFEWNSECEEAFTRLKEMLSAPPVLSKPVQGLPLHLYFSVGDHAISSVILQE 504
LK+ F+W+ + EEAF +LK+ LS PP+L KP G L+LY +V DHA+SSV+++E
Sbjct: 1080 YNLLKRRAQFDWDKDSEEAFEKLKDYLSTPPILVKPEVGETLYLYIAVSDHAVSSVLVRE 1139
Query: 505 VDGEQKIVYFVS 516
GEQ+ +++ S
Sbjct: 1140 DRGEQRPIFYTS 1151
Score = 247 bits (631), Expect = 1e-63
Identities = 144/379 (37%), Positives = 207/379 (53%), Gaps = 19/379 (5%)
Query: 601 FLVELTPEEGEKVST-----QWILFVDGSSNDNGSEAGVTLQGPGELVLEQSLRFQFKTS 655
FL+EL + E+ + +W L+VDGSS+ GS G+ L P VLEQS R +F +
Sbjct: 1236 FLIELPLQSAERAVSGNRGEEWSLYVDGSSSARGSGIGIRLVSPTAEVLEQSFRLRFVAT 1295
Query: 656 NNQAEYEALIAGLKLAIEVQIDSLPVRTDSPLVANQVNGEFQVKELALIKYVERVRLLMG 715
NN AEYE LIAGL+LA +QI ++ TDS L+A Q++GE++ K + Y++ V+L+
Sbjct: 1296 NNVAEYEVLIAGLRLAAGMQITTIHAFTDSQLIAGQLSGEYEAKNEKMDAYLKIVQLMTK 1355
Query: 716 RLQQVVVEFVPRAQNQRADALAKLASTRKPGNNRSVIQETLANPNIEG----EFVASVDR 771
+ + +PR N ADALA LA T R + E++ P+I+ E V ++
Sbjct: 1356 DFENFKLSKIPRGDNAPADALAALALTSDSDLRRIIPVESIDKPSIDSTDAVEIVNTIRS 1415
Query: 772 QET--------WMNPIIDILAGEPSDVVKYSKAQRR-EAGHYTLLDGILFRRGFSSPLLR 822
W I D L+ K++ + R +A YTL+ L + +L
Sbjct: 1416 SNAPDPADPTDWRVEIRDYLSDGTLPSDKWTARRLRIKAAKYTLMKEHLLKVSAFGAMLN 1475
Query: 823 CLPPEKYEAVMTEVHEGVCASHIGGRSLASKVLRAGFYWPTIRKECAEFVRKCKKCQVFT 882
CL + +M E HEG +H GGR+LA K+ + GFYWPT+ +C F KC++CQ
Sbjct: 1476 CLHGTEINEIMKETHEGAAGNHSGGRALALKLKKLGFYWPTMISDCKTFTAKCEQCQRHA 1535
Query: 883 DLPRAPPGQLVTISSPWPFAMWGVDLVGPFPTARSQMKFILVAVDYFTKWVEAEPLASIT 942
P L +P+PF W +D+VGP P +R Q +FILV DYFTKWVEAE A+I
Sbjct: 1536 PTIHQPTELLRAGVAPYPFMRWAMDIVGPMPASR-QKRFILVMTDYFTKWVEAESYATIR 1594
Query: 943 AAKIISFYWKRIVCRFGVP 961
A + +F WK I+CR G+P
Sbjct: 1595 ANDVQNFVWKFIICRHGLP 1613
>gb|AAL76007.1| prpol [Zea mays]
Length = 1317
Score = 409 bits (1050), Expect = e-112
Identities = 220/520 (42%), Positives = 312/520 (59%), Gaps = 12/520 (2%)
Query: 1 QVWVKDALDLDTTFGEEENARTLSVKYLILETEGSYNMIIGRITLNRLCAVISTAQLAVK 60
Q+ + + TFG N RT V + I++ E YN IIGR TLN A++ A L +K
Sbjct: 132 QIVALGKITMSVTFGFINNTRTEQVVFDIVDMEYPYNAIIGRGTLNAFEAILHPAYLCMK 191
Query: 61 YPLSNGHIGGIVVDQRIARECYCNAVDRYGKKNASVGHRCSEVETPEESLDPRGEGRVNR 120
P G I I Q AR N D N C + + E ++
Sbjct: 192 IPSDQGPIA-IHGSQEAARRAEGNWTDSKAIHNIDGAEACEQYKFRREKA-----ASADQ 245
Query: 121 PTPIEETKDLKFGEKILKIGTKLSEEQEQRISKLLGDNLDLFAWSHKYMPGIDPNFICHR 180
P P+ +D+ E+ + +G++LSEEQE+ + + L +N D+FAWS + G++ + I H
Sbjct: 246 PKPMLLCEDI--AEQKVLLGSQLSEEQEKTLIRFLFNNKDVFAWSANDLCGVNRDVIEHS 303
Query: 181 LALNPGVEPITQTRRRMGNEKEKAIQQEVNKLLAADFIREIKYPTWLVNVVIVKKANGKW 240
L ++P P Q R+M ++K + + EV +LL+A IRE+KYP WL N V+VKKANGKW
Sbjct: 304 LNVDPSFRPRKQRLRKMSDDKAEGARNEVKRLLSAGVIREVKYPEWLANTVMVKKANGKW 363
Query: 241 RMCVDNTDLNKTCPKDSYPLPSIDKLVDGALGNELLSLMDAYSGYHQIKMHQSDEDKTTF 300
RMC+D TDLNK CPKD +PLP ID LVD A +EL+SL+D YSGYHQI M + DE KT+F
Sbjct: 364 RMCIDFTDLNKACPKDEFPLPRIDSLVDAAASSELMSLLDCYSGYHQIWMKKEDEPKTSF 423
Query: 301 MTARVNYCYQTMPFGLKNAGATYQRLMDRVFEGQVGRNMEVYVDDMIVKSVLGSNHHEDL 360
+T YCY MP GLKNAG ++ R+ +V + Q+GRN+ YVDD+IVKS NH DL
Sbjct: 424 ITPSGTYCYLRMPEGLKNAGGSFSRMTAKVLQSQIGRNVLTYVDDIIVKSTKQENHIADL 483
Query: 361 MEAFGRIQKHNMRLNPEKCSFGIRGGKFLGFLITSRRIEINPDKCKAIQEMKSPSNVKEV 420
E F ++ ++LNPEKC FG++ GKFLG L++++ IE NP K +AI M+ P+ K
Sbjct: 484 QETFASFRQAGLKLNPEKCVFGVKKGKFLGCLVSTKGIEANPSKIEAILRMEPPTTKKGA 543
Query: 421 QRLIGRITALSRFLLHSGDKSAPFIKCLKKNTTFEWNSECEEAFTRLKEMLSAPPVLSKP 480
QRL GR+ +L+RF+ S +++ PF + LK F+W ++AF LK+ L L+ P
Sbjct: 544 QRLTGRLASLNRFISRSAERNLPFFEVLKSAEVFQWGPIQQKAFEELKQYLIDLTTLTPP 603
Query: 481 VQGLPLHLYFSVGDHAISSVILQE-VDGE---QKIVYFVS 516
+ G PL LY + A+S+ ++QE +DG+ Q +YFVS
Sbjct: 604 MSGAPLLLYVAASHSAVSAALVQEKLDGQVKRQAPIYFVS 643
Score = 255 bits (651), Expect = 6e-66
Identities = 139/372 (37%), Positives = 208/372 (55%), Gaps = 10/372 (2%)
Query: 601 FLVELTP----EEGEKVSTQWILFVDGSSNDNGSEAGVTLQGPGELVLEQSLRFQFKTSN 656
F+ + TP EE K + W +F DGS G+ A L P ++ + + + F +N
Sbjct: 728 FIADWTPGAQEEETNKDNEAWTVFCDGSWGTFGAGAAAVLVSPSKVKICYAAKLDFNCTN 787
Query: 657 NQAEYEALIAGLKLAIEVQIDSLPVRTDSPLVANQVNGEFQVKELALIKYVERVRLLMGR 716
N AEYEAL+ GL+ + I ++TDS +V+ ++ + K+ L KY++ VR +
Sbjct: 788 NIAEYEALVLGLRKLKAMGIRRAILKTDSQVVSGHIDKSCKAKDPKLEKYLDMVRRIEAS 847
Query: 717 LQQVVVEFVPRAQNQRADALAKLASTRKPGNNRSVIQETLANPNIE----GEFVASVDRQ 772
+ V+ +PR QN+ AD LAK A+ P + V ET+ P++E S
Sbjct: 848 FEGFSVKNIPRGQNEHADLLAKSAAQGLPLPS-DVFFETIKAPSVELLERAVLNISPVFS 906
Query: 773 ETWMNPIIDILAGE-PSDVVKYSKAQRREAGHYTLLDGILFRRGFSSPLLRCLPPEKYEA 831
E W II L G+ SD Y+K A Y +++G L++ G +PLL+CL +
Sbjct: 907 EDWRTEIISYLQGKFLSDDEAYNKRIEARARPYVMIEGELYKHGVCAPLLKCLSRTEGIE 966
Query: 832 VMTEVHEGVCASHIGGRSLASKVLRAGFYWPTIRKECAEFVRKCKKCQVFTDLPRAPPGQ 891
+M E+H G+C SHIG R L KV R GFYWP + AE V+KC+ CQ + P
Sbjct: 967 LMKEIHAGLCGSHIGSRPLLGKVFRQGFYWPKAASDAAELVQKCEGCQKCARDQKQPSSL 1026
Query: 892 LVTISSPWPFAMWGVDLVGPFPTARSQMKFILVAVDYFTKWVEAEPLASITAAKIISFYW 951
I WP WG+DL+GP P A+ +++++VAV+YF+KW+EA+PLA+IT+A + F+W
Sbjct: 1027 TQLIQPTWPLQRWGLDLLGPLPPAQGNLRYVVVAVEYFSKWIEAKPLATITSATVQKFFW 1086
Query: 952 KRIVCRFGVPRA 963
+ IVCRFGVP+A
Sbjct: 1087 QNIVCRFGVPKA 1098
>gb|AAD11615.1| prpol [Zea mays] gi|7489805|pir||T14595 polyprotein - maize
retrotransposon Cinful-1
Length = 1317
Score = 405 bits (1042), Expect = e-111
Identities = 220/520 (42%), Positives = 310/520 (59%), Gaps = 12/520 (2%)
Query: 1 QVWVKDALDLDTTFGEEENARTLSVKYLILETEGSYNMIIGRITLNRLCAVISTAQLAVK 60
Q+ + + TFG N RT V + I++ E YN IIGR TLN A++ A L +K
Sbjct: 132 QIVALGKITMSVTFGFINNTRTEQVVFDIVDMEYPYNAIIGRGTLNAFEAILHPAYLCMK 191
Query: 61 YPLSNGHIGGIVVDQRIARECYCNAVDRYGKKNASVGHRCSEVETPEESLDPRGEGRVNR 120
P G I I Q AR N D N C + E ++
Sbjct: 192 MPSDQGPIA-IHGSQEAARRAEGNWTDSKAIHNIDGAEACEXYKFRREKA-----ASADQ 245
Query: 121 PTPIEETKDLKFGEKILKIGTKLSEEQEQRISKLLGDNLDLFAWSHKYMPGIDPNFICHR 180
P P+ +D+ E+ + +G++LSEEQE+ + + L +N D+FAWS + G++ + I H
Sbjct: 246 PKPMLLCEDI--AEQKVLLGSQLSEEQEKTLIRFLFNNKDVFAWSANDLCGVNRDVIEHS 303
Query: 181 LALNPGVEPITQTRRRMGNEKEKAIQQEVNKLLAADFIREIKYPTWLVNVVIVKKANGKW 240
L ++P P Q R+M ++K + + EV +LL+A IRE+KYP WL N V+VKKANGKW
Sbjct: 304 LNVDPSFRPRKQRLRKMSDDKAEGARNEVKRLLSAGVIREVKYPEWLANTVMVKKANGKW 363
Query: 241 RMCVDNTDLNKTCPKDSYPLPSIDKLVDGALGNELLSLMDAYSGYHQIKMHQSDEDKTTF 300
RMC+D TDLNK CPKD +PLP ID LVD +EL+SL+D YSGYHQI M + DE KT+F
Sbjct: 364 RMCIDFTDLNKACPKDEFPLPRIDSLVDATASSELMSLLDCYSGYHQIWMKREDEPKTSF 423
Query: 301 MTARVNYCYQTMPFGLKNAGATYQRLMDRVFEGQVGRNMEVYVDDMIVKSVLGSNHHEDL 360
+T YCY MP GLKNAG ++ R+ +V + Q+GRN+ YVDD+IVKS NH DL
Sbjct: 424 ITPSGTYCYLRMPEGLKNAGGSFSRMTAKVLQSQIGRNVLTYVDDIIVKSTKQENHIADL 483
Query: 361 MEAFGRIQKHNMRLNPEKCSFGIRGGKFLGFLITSRRIEINPDKCKAIQEMKSPSNVKEV 420
E F ++ ++LNPEKC FG++ GKFLG L++++ IE NP K +AI M+ P+ K
Sbjct: 484 QETFASFRQAGLKLNPEKCVFGVKKGKFLGCLVSTKGIEANPSKIEAILRMEPPTTKKGA 543
Query: 421 QRLIGRITALSRFLLHSGDKSAPFIKCLKKNTTFEWNSECEEAFTRLKEMLSAPPVLSKP 480
QRL GR+ +L+RF+ S +++ PF + LK F+W ++AF LK+ L L+ P
Sbjct: 544 QRLTGRLASLNRFISRSAERNLPFFEVLKSAEVFQWGPIQQKAFEELKQYLIDLTALTPP 603
Query: 481 VQGLPLHLYFSVGDHAISSVILQE-VDGE---QKIVYFVS 516
+ G PL LY + A+S+ ++QE +DG+ Q VYFVS
Sbjct: 604 MPGAPLLLYVAASHSAVSAALVQEKLDGQTRKQVPVYFVS 643
Score = 251 bits (641), Expect = 8e-65
Identities = 137/372 (36%), Positives = 206/372 (54%), Gaps = 10/372 (2%)
Query: 601 FLVELTP----EEGEKVSTQWILFVDGSSNDNGSEAGVTLQGPGELVLEQSLRFQFKTSN 656
F+ + TP EE K + W +F DGS G+ A L P ++ + F +N
Sbjct: 728 FIADWTPGAQEEEANKDTEAWTVFCDGSWGTFGAGAAAVLVSPSKVKTCYVAKLDFSCTN 787
Query: 657 NQAEYEALIAGLKLAIEVQIDSLPVRTDSPLVANQVNGEFQVKELALIKYVERVRLLMGR 716
N AEYEAL+ GL+ + I ++TDS +V+ ++ + K+ L KY++ VR +
Sbjct: 788 NIAEYEALLLGLRKLKAMGIRRAVLKTDSQVVSGHIDKSCKAKDPKLEKYLDMVRRVEAS 847
Query: 717 LQQVVVEFVPRAQNQRADALAKLASTRKPGNNRSVIQETLANPNIE----GEFVASVDRQ 772
+ V+ +PR QN+ AD LAK A+ P + V ET+ P++E S
Sbjct: 848 FEGFSVKNIPRGQNEHADLLAKSAAQGLPLPS-DVFFETIKAPSVELLERAVLNISPVYS 906
Query: 773 ETWMNPIIDILAGE-PSDVVKYSKAQRREAGHYTLLDGILFRRGFSSPLLRCLPPEKYEA 831
E W II L G+ SD Y++ A Y +++G L++ G +PLL+CL +
Sbjct: 907 EDWRTEIISYLQGKFLSDDEAYNRRIEARARPYVMIEGELYKHGVCAPLLKCLSRTEGIE 966
Query: 832 VMTEVHEGVCASHIGGRSLASKVLRAGFYWPTIRKECAEFVRKCKKCQVFTDLPRAPPGQ 891
+M E+H G+C SHIG R L K+ R GFYWP + AE V+KC+ CQ + P
Sbjct: 967 LMKEIHAGLCGSHIGSRPLLGKIFRQGFYWPKAASDAAELVQKCEGCQKCARDQKQPSSL 1026
Query: 892 LVTISSPWPFAMWGVDLVGPFPTARSQMKFILVAVDYFTKWVEAEPLASITAAKIISFYW 951
I WP WG+DL+GP P A+ +++++VAV+YF+KW+EA+PLA+IT+A + F+W
Sbjct: 1027 TQLIQPIWPLQRWGLDLLGPLPPAQGNLRYVVVAVEYFSKWIEAKPLATITSATVQKFFW 1086
Query: 952 KRIVCRFGVPRA 963
+ IVCRFGVP+A
Sbjct: 1087 QNIVCRFGVPKA 1098
>emb|CAD40359.2| OSJNBa0093P23.5 [Oryza sativa (japonica cultivar-group)]
gi|50922621|ref|XP_471671.1| OSJNBa0041M21.10 [Oryza
sativa (japonica cultivar-group)]
gi|38343986|emb|CAD40452.2| OSJNBa0041M21.10 [Oryza
sativa (japonica cultivar-group)]
Length = 2074
Score = 403 bits (1036), Expect = e-110
Identities = 222/536 (41%), Positives = 316/536 (58%), Gaps = 16/536 (2%)
Query: 14 FGEEENARTLSVKYLILETEGSYNMIIGRITLNRLCAVISTAQLAVKYPLSNGHIGGIVV 73
FG EN R + + ++ +YN I GR TLN+L A+ L +K P G I +
Sbjct: 1535 FGSGENRREEQILFDVVNIPYNYNAIFGRATLNKLEAISHHNYLKLKMPGPTGVIVVKGL 1594
Query: 74 DQRIARECYCNAVDRYGKKNASVGHRCSEVETPEESLDPRGEGRVNRPTPIEETKDLKFG 133
A +C ++R + H E P+ + P G+V + I + K
Sbjct: 1595 QPSAASKCDLAIINRAVHNVKTEPH-----ERPKHTPKPTPHGKVTK-VQINDADPTK-- 1646
Query: 134 EKILKIGTKLSEEQEQRISKLLGDNLDLFAWSHKYMPGIDPNFICHRLALNPGVEPITQT 193
++ +G + EE+ + I ++L N+D+FAWS + G+ + I H LA+ P ++P Q
Sbjct: 1647 --LVSLGGDMGEEEVESILEVLKKNIDIFAWSPDEVGGVPADLIMHHLAVKPNIKPRKQK 1704
Query: 194 RRRMGNEKEKAIQQEVNKLLAADFIREIKYPTWLVNVVIVKKANGKWRMCVDNTDLNKTC 253
R+M ++++A + EV KLL A I+EI +P WL N V+V+K+NGKWRMCVD TDLNK C
Sbjct: 1705 LRKMSADRQEATKTEVQKLLRAGVIQEIDHPEWLANPVLVRKSNGKWRMCVDFTDLNKAC 1764
Query: 254 PKDSYPLPSIDKLVDGALGNELLSLMDAYSGYHQIKMHQSDEDKTTFMTARVNYCYQTMP 313
PK +PLP ID+LVD G EL+S +DAYSGYHQI M+ D KT+F+T +C+ MP
Sbjct: 1765 PKHDFPLPRIDQLVDLTAGCELMSFLDAYSGYHQIHMNPLDIPKTSFITPFGTFCHLRMP 1824
Query: 314 FGLKNAGATYQRLMDRVFEGQVGRNMEVYVDDMIVKSVLGSNHHEDLMEAFGRIQKHNMR 373
FGL+NAGAT+ RL+ +V Q+GRN+E YVDD++VKS +H DL E F + ++
Sbjct: 1825 FGLRNAGATFARLVYKVLGKQLGRNVEAYVDDIVVKSRKAFDHAIDLQETFDNLCVAGIK 1884
Query: 374 LNPEKCSFGIRGGKFLGFLITSRRIEINPDKCKAIQEMKSPSNVKEVQRLIGRITALSRF 433
LNPEKC F +R GK LGFL++ IE NP+K AIQ+MK PS++ EVQ+L GRI ALSRF
Sbjct: 1885 LNPEKCVFSVRVGKLLGFLVSETGIEANPEKIDAIQQMKPPSSIHEVQKLAGRIAALSRF 1944
Query: 434 LLHSGDKSAPFIKCLKKNTTFEWNSECEEAFTRLKEMLSAPPVLSKPVQGLPLHLYFSVG 493
L + ++ PF K L+ F W EC+ AF LK+ L +PPVL P +G L LY +
Sbjct: 1945 LSKAVERGLPFFKTLRDARKFNWTPECQAAFDELKQHLQSPPVLISPPRGSELLLYLAAS 2004
Query: 494 DHAISSVILQEVDGEQKIVYFVSYHFRGRRSGIRR*KKRCSPSSSP------PDAY 543
A+S+ ++Q+ + QK VYFVS +G ++ +K S P P+AY
Sbjct: 2005 PVAVSAALVQKTESRQKSVYFVSEALQGAQTRYIEMEKLAYALSRPEFLSKIPNAY 2060
>gb|AAP52706.1| putative polyprotein [Oryza sativa (japonica cultivar-group)]
gi|37532234|ref|NP_920419.1| putative polyprotein [Oryza
sativa (japonica cultivar-group)]
gi|19225035|gb|AAL86511.1| putative polyprotein [Oryza
sativa (japonica cultivar-group)]
Length = 1722
Score = 392 bits (1008), Expect = e-107
Identities = 219/513 (42%), Positives = 303/513 (58%), Gaps = 14/513 (2%)
Query: 14 FGEEENARTLSVKYLILETEGSYNMIIGRITLNRLCAVISTAQLAVKYPLSNGHIGGIVV 73
FG EN R V + +++ +YN I GR TLN + L +K P G G IVV
Sbjct: 603 FGSGENRREEQVLFDVVDIPYNYNTIFGRATLNMFEVISHHNYLELKMP---GPTGVIVV 659
Query: 74 D--QRIARECYCNAVDRYGKKNASVGHRCSEVETPEESLDPRGEGRVNRPTPIEETKDLK 131
Q A A+ N V + P+ + P G++ I+ D
Sbjct: 660 KGLQPSAASKGDLAIINRAVHNVEVKLH----DRPKHAPKPTPHGKI-----IKVQIDDA 710
Query: 132 FGEKILKIGTKLSEEQEQRISKLLGDNLDLFAWSHKYMPGIDPNFICHRLALNPGVEPIT 191
K++ +G + +E+ + I K+ N+D+FAWS + G+ I H LA+ P +P
Sbjct: 711 VPTKLVSLGGDMGKEEVESILKVPKKNIDIFAWSPDEVGGVSIVLIMHHLAVKPEAKPRK 770
Query: 192 QTRRRMGNEKEKAIQQEVNKLLAADFIREIKYPTWLVNVVIVKKANGKWRMCVDNTDLNK 251
Q R+M ++++A + EV KLL A I+EI +P WL N V+V+K+NGKWRMCVD TDLNK
Sbjct: 771 QKLRKMSADRQEAAKAEVQKLLRAGVIQEIDHPEWLANPVLVQKSNGKWRMCVDFTDLNK 830
Query: 252 TCPKDSYPLPSIDKLVDGALGNELLSLMDAYSGYHQIKMHQSDEDKTTFMTARVNYCYQT 311
CPKD +PLP ID+LVD G EL+S ++AYSGYHQI M+ D KT+F+T +C+
Sbjct: 831 ACPKDDFPLPRIDQLVDSTAGCELMSFLNAYSGYHQIHMNPLDIPKTSFITPFDTFCHLR 890
Query: 312 MPFGLKNAGATYQRLMDRVFEGQVGRNMEVYVDDMIVKSVLGSNHHEDLMEAFGRIQKHN 371
MPFGL+NAGAT+ RL+ +V Q+GRN+E YVDD++VK +H DL E F ++
Sbjct: 891 MPFGLRNAGATFARLVYKVLCKQLGRNVEAYVDDIVVKIRKAFDHAIDLQETFDNLRAAG 950
Query: 372 MRLNPEKCSFGIRGGKFLGFLITSRRIEINPDKCKAIQEMKSPSNVKEVQRLIGRITALS 431
++LNPEKC FG+R GK LGFL++ R IE NP+K AIQ+MK PS+V EVQ+L GRI ALS
Sbjct: 951 IKLNPEKCVFGVRAGKLLGFLVSERGIEANPEKIDAIQQMKPPSSVHEVQKLAGRIVALS 1010
Query: 432 RFLLHSGDKSAPFIKCLKKNTTFEWNSECEEAFTRLKEMLSAPPVLSKPVQGLPLHLYFS 491
RFL + ++ PF K L+ F W EC+ AF LK+ L +PP L P G L LY +
Sbjct: 1011 RFLSRAAERGLPFFKTLRGAGKFNWTPECQVAFDELKQYLQSPPALLSPPPGSELLLYLA 1070
Query: 492 VGDHAISSVILQEVDGEQKIVYFVSYHFRGRRS 524
A+S+ ++QE QK VYFVS +G ++
Sbjct: 1071 ASPVAVSAALVQETKFGQKPVYFVSEALQGAKT 1103
Score = 242 bits (617), Expect = 5e-62
Identities = 129/321 (40%), Positives = 190/321 (59%), Gaps = 12/321 (3%)
Query: 652 FKTSNNQAEYEALIAGLKLAIEVQIDSLPVRTDSPLVANQVNGEFQVKELALIKYVERVR 711
F T+NN AEYEA++ GL+ A + L +RTDS LVA V+ F+ KE + +Y+E VR
Sbjct: 1187 FDTTNNAAEYEAILLGLRKAKALGFRRLLIRTDSKLVAGHVDKSFEAKEEGMKRYLEAVR 1246
Query: 712 LLMGRLQQVVVEFVPRAQNQRADALAKLASTRKPGNNRSVIQETLANPNI--EGEFVASV 769
+ + VE +PR QN+ AD LAK A+ P ++ + E L P++ + + ++
Sbjct: 1247 SMEKCFTGITVEHLPRGQNEEADTLAKSAAYGGP-HSPGIFFEVLHAPSVPTDSSEIMAI 1305
Query: 770 DRQET------WMNPIIDILAGE--PSDVVKYSKAQRREAGHYTLLDGILFRRGFSSPLL 821
D+ + W P + L P D + + Q R A Y ++ G L+R G PLL
Sbjct: 1306 DQVKLGEDPYDWRTPFVKHLETGWLPEDEAEAKRLQLR-ATKYKMVSGQLYRSGVLQPLL 1364
Query: 822 RCLPPEKYEAVMTEVHEGVCASHIGGRSLASKVLRAGFYWPTIRKECAEFVRKCKKCQVF 881
R + + E + E+H+G+C +H R++ASKV R YWPT+ K C E ++KC+ CQ
Sbjct: 1365 RYISFAEGEEMAKEIHQGLCGAHQAARTVASKVFRQEVYWPTVLKVCVEQIKKCESCQHH 1424
Query: 882 TDLPRAPPGQLVTISSPWPFAMWGVDLVGPFPTARSQMKFILVAVDYFTKWVEAEPLASI 941
AP L I+ WPFA WG+D++GPFP AR+ KF++VAV+YF++W+EAEPL +I
Sbjct: 1425 GRSQTAPQYDLQPIAPIWPFARWGLDIIGPFPVARNGYKFVIVAVEYFSRWIEAEPLGAI 1484
Query: 942 TAAKIISFYWKRIVCRFGVPR 962
T+A + F WK IVCRFGVP+
Sbjct: 1485 TSAAVQKFVWKNIVCRFGVPK 1505
>gb|AAL66756.1| putative prpol [Zea mays]
Length = 969
Score = 389 bits (1000), Expect = e-106
Identities = 209/496 (42%), Positives = 296/496 (59%), Gaps = 8/496 (1%)
Query: 1 QVWVKDALDLDTTFGEEENARTLSVKYLILETEGSYNMIIGRITLNRLCAVISTAQLAVK 60
Q+ D + + TFG N RT V + I++ E YN IIG TLN A++ A L +K
Sbjct: 326 QIVALDKIMMPVTFGFVNNTRTEQVVFDIVDMEYPYNAIIGHGTLNAFEAILHPAYLYMK 385
Query: 61 YPLSNGHIGGIVVDQRIARECYCNAVDRYGKKNASVGHRCSEVETPEESLDPRGEGRVNR 120
P G I I Q AR+ N D N C + + E ++
Sbjct: 386 IPSDQGPIA-IHGSQEAARKAEGNWTDSKAIHNIDGAEACEQYKYRREKA-----ASTDQ 439
Query: 121 PTPIEETKDLKFGEKILKIGTKLSEEQEQRISKLLGDNLDLFAWSHKYMPGIDPNFICHR 180
P + +D+ E+ + +G++L+EEQE+ +++ L +N D+FAWS + G++ + H
Sbjct: 440 PKLMLLCEDI--AEQKVLLGSQLTEEQEKTLTRFLFNNKDVFAWSANDLCGVNRDVNEHS 497
Query: 181 LALNPGVEPITQTRRRMGNEKEKAIQQEVNKLLAADFIREIKYPTWLVNVVIVKKANGKW 240
L ++P P Q R+M ++K K + EV +LL+A IRE+KYP WL N V+VKKANGKW
Sbjct: 498 LNVDPSFRPRKQRLRKMSDDKAKGARNEVKRLLSAGVIREVKYPEWLANTVMVKKANGKW 557
Query: 241 RMCVDNTDLNKTCPKDSYPLPSIDKLVDGALGNELLSLMDAYSGYHQIKMHQSDEDKTTF 300
RMC+D TDLNK CPKD +PL ID LVD A +EL+SL+D YSGYHQI M + DE KT+F
Sbjct: 558 RMCIDFTDLNKACPKDEFPLSRIDSLVDAAASSELMSLLDCYSGYHQIWMKKEDEPKTSF 617
Query: 301 MTARVNYCYQTMPFGLKNAGATYQRLMDRVFEGQVGRNMEVYVDDMIVKSVLGSNHHEDL 360
+T YCY MP GLKNAG ++ R+ +V Q+GRN+ YVDD+IVKS+ NH DL
Sbjct: 618 ITPSGTYCYLRMPEGLKNAGGSFSRMTAKVLHSQIGRNVLTYVDDIIVKSMKQENHIADL 677
Query: 361 MEAFGRIQKHNMRLNPEKCSFGIRGGKFLGFLITSRRIEINPDKCKAIQEMKSPSNVKEV 420
E F ++ ++LNPEKC FG++ GKFLG L++++ IE NP+K +AI M+ PS K
Sbjct: 678 QETFANFRQAVLKLNPEKCVFGVKKGKFLGCLVSTKGIEANPNKIEAILRMEPPSTKKGA 737
Query: 421 QRLIGRITALSRFLLHSGDKSAPFIKCLKKNTTFEWNSECEEAFTRLKEMLSAPPVLSKP 480
QRL GR+ +L+RF+ S +++ PF + LK F+W S ++AF LK+ L +L+ P
Sbjct: 738 QRLTGRLASLNRFISGSAERNLPFFEVLKSTEVFQWGSAQQKAFEELKQYLIDLTMLTPP 797
Query: 481 VQGLPLHLYFSVGDHA 496
G PL LY + A
Sbjct: 798 APGAPLLLYVAASHSA 813
Score = 52.0 bits (123), Expect = 9e-05
Identities = 34/114 (29%), Positives = 57/114 (49%), Gaps = 4/114 (3%)
Query: 601 FLVELTP---EEGEKVSTQ-WILFVDGSSNDNGSEAGVTLQGPGELVLEQSLRFQFKTSN 656
F+ + TP EEG + W +F D S G+ A L P + +++ F +N
Sbjct: 856 FIADWTPGAHEEGTSKDVEAWTVFCDDSWGTFGAGAATVLVTPSNVKTCFAVKLDFSCTN 915
Query: 657 NQAEYEALIAGLKLAIEVQIDSLPVRTDSPLVANQVNGEFQVKELALIKYVERV 710
N AEYEAL+ L+ + I ++TDS ++A V+ + ++ L KY++ V
Sbjct: 916 NIAEYEALLLWLRKLRSMGIRRAILKTDSQVIAGHVDKSSRARDPKLEKYLDAV 969
>ref|XP_474845.1| OSJNBa0035O13.3 [Oryza sativa (japonica cultivar-group)]
gi|21741410|emb|CAD40114.1| OSJNBa0035O13.3 [Oryza sativa
(japonica cultivar-group)]
Length = 2008
Score = 385 bits (990), Expect = e-105
Identities = 220/521 (42%), Positives = 303/521 (57%), Gaps = 24/521 (4%)
Query: 8 LDLDTTFGEEENARTLSVKYLILETEGSYNMIIGRITLNRLCAVISTAQLAVKYPLSNGH 67
+ L TFG EN RT ++ + + + E +Y+ I+GR L + AV + +K P G
Sbjct: 836 ITLPVTFGTRENFRTENISFEVADFETAYHAILGRPALAKFMAVPHYTYMMMKMP---GP 892
Query: 68 IGGIVVDQRIARECYCNAVDRYGKKNASVGHRCSEVETPEESLDPRGEGRVNRPTPIEET 127
G + + I + C+ K++ + H E D R I T
Sbjct: 893 RGVLSLRSDIKQAVTCD------KESCDMAHTHEMASARE---DIRLAAATASEGEIPVT 943
Query: 128 KDLKFGE---KILKIGTKLSEEQEQRISKL---LGDNLDLFAWSHKYMPGIDPNFICHRL 181
K K GE K KI S+ + S L L +N D+FAW MPGI I H L
Sbjct: 944 KTSKSGESEAKTKKIPLDPSDPTKTAESALITFLQNNKDIFAWKPSDMPGIPREVIEHSL 1003
Query: 182 ALNPGVEPITQTRRRMGNEKEKAIQQEVNKLLAADFIREIKYPTWLVNVVIVKKANGKWR 241
+ +PI Q RR +++ AI++E+ KLLAA FI+E+ +P WL N V+V+K G+WR
Sbjct: 1004 HVKEDAKPIKQRLRRFAQDRKDAIKEELTKLLAAGFIKEVLHPDWLANPVLVRKKTGQWR 1063
Query: 242 MCVDNTDLNKTCPKDSYPLPSIDKLVDGALGNELLSLMDAYSGYHQIKMHQSDEDKTTFM 301
MCVD TDLNK+CPKD + LP ID++VD G ELLS +D YSGYHQI++ +SD KT+F+
Sbjct: 1064 MCVDYTDLNKSCPKDPFGLPRIDQVVDSTAGCELLSFLDCYSGYHQIRLKESDCLKTSFI 1123
Query: 302 TARVNYCYQTMPFGLKNAGATYQRLMDRVFEGQVGRNMEVYVDDMIVKSVLGSNHHEDLM 361
T YCY TMPFGLKNAGATYQR++ R F Q+GRN+E YVDD++VK+ + DL
Sbjct: 1124 TPFGAYCYVTMPFGLKNAGATYQRMIQRCFSTQIGRNVEAYVDDVVVKTKQKDDLISDLE 1183
Query: 362 EAFGRIQKHNMRLNPEKCSFGIRGGKFLGFLITSRRIEINPDKCKAIQEMKSPSNVKEVQ 421
E F I+ M+LNPEKC+FG+ GK LGF+++ R I+ NP+K AI MK PS K+VQ
Sbjct: 1184 ETFVSIRAFRMKLNPEKCTFGVPSGKLLGFMVSHRGIQANPEKVTAILNMKPPSTQKDVQ 1243
Query: 422 RLIGRITALSRFLLHSGDKSAPFIKCLKKNTTFEWNSECEEAFTRLKEMLSAPPVLSKPV 481
+L G + ALSRF+ G++ PF K LKK F+W E ++AF K++L+ PPVL+ P
Sbjct: 1244 KLTGCMAALSRFVSRLGERGMPFFKLLKKTDNFQWGPEAQKAFEDFKKLLTEPPVLASPH 1303
Query: 482 QGLPLHLYFSVGDHAISSVILQEVDGE------QKIVYFVS 516
PL LY S +S+V+ E + E Q+ +YFVS
Sbjct: 1304 PQEPLLLYVSATSQVVSTVLAVEREEEGHVQKVQRPIYFVS 1344
Score = 205 bits (521), Expect = 7e-51
Identities = 128/367 (34%), Positives = 186/367 (49%), Gaps = 15/367 (4%)
Query: 604 ELTPEEGEKVSTQWILFVDGSSNDNGSEAGVTLQGPGELVLEQSLRFQFKTSNNQAEYEA 663
E TP E + W + DGS +G+ AGV L P L L F S+N AEYEA
Sbjct: 1424 EDTPAENME---HWTMHFDGSKRLSGTGAGVVLISPTGERLSYVLWIHFSASHNVAEYEA 1480
Query: 664 LIAGLKLAIEVQIDSLPVRTDSPLVANQVNGEFQVKELALIKYVERVRLLMGRLQQVVVE 723
L+ GL++AI + I L VR DS LV NQV E+ + ++ Y + VR L + + +
Sbjct: 1481 LLHGLRIAISLGIKRLIVRGDSQLVVNQVMKEWSCLDDNMMAYRQEVRKLEDKFDGLELS 1540
Query: 724 FVPRAQNQRADALAKLASTRKPGNNRSVIQETLANPNIEGEFVASVDR-------QETWM 776
V R N+ AD LA S R+ + V E L P + + V + W
Sbjct: 1541 HVLRHNNEAADRLANFGSKREVAPS-DVFVEHLYTPTVPHKDTTQVAGTHDVAVVETDWR 1599
Query: 777 NPIIDILAGE--PSDVVKYSKAQRREAGHYTLLDGILFRRGFSSPLLRCLPPEKYEAVMT 834
P+I L + P D + + RR Y + + L+++ S L RC+ E+ ++
Sbjct: 1600 EPLIRFLTSQELPQDKDEAERISRRSK-LYVMHEAELYKKSPSGILQRCVSLEEGRQLLK 1658
Query: 835 EVHEGVCASHIGGRSLASKVLRAGFYWPTIRKECAEFVRKCKKCQVFTDLPRAPPGQLVT 894
++H G+C +H R++ K R GF+WPT + + VR C+ CQ F P +L T
Sbjct: 1659 DIHSGICGNHAAARTIVGKAYRQGFFWPTAVSDADKIVRTCEGCQFFARQIHLPAQELQT 1718
Query: 895 ISSPWPFAMWGVDLVGPFPTARSQMKFILVAVDYFTKWVEAEPLASITAAKIISFYWKRI 954
I WPFA+WG+D+VGPF A + VA+D F+KW+EA+P+ +ITA F+ I
Sbjct: 1719 IPLSWPFAVWGLDMVGPFKKAVGGYTHLFVAIDKFSKWIEAKPVVTITADNARDFF-INI 1777
Query: 955 VCRFGVP 961
V RFGVP
Sbjct: 1778 VHRFGVP 1784
>ref|XP_469384.1| putative polyprotein [Oryza sativa (japonica cultivar-group)]
gi|27552545|gb|AAO19368.1| putative polyprotein [Oryza
sativa (japonica cultivar-group)]
Length = 777
Score = 385 bits (990), Expect = e-105
Identities = 187/382 (48%), Positives = 253/382 (65%)
Query: 143 LSEEQEQRISKLLGDNLDLFAWSHKYMPGIDPNFICHRLALNPGVEPITQTRRRMGNEKE 202
+ EE+ + I ++L N+D+FAW + G+ + I H LA+ P +P Q +M ++
Sbjct: 1 MGEEEAKNILEVLKKNIDIFAWGPDEVGGVSADLIMHHLAVKPDAKPRKQKLHKMSANRQ 60
Query: 203 KAIQQEVNKLLAADFIREIKYPTWLVNVVIVKKANGKWRMCVDNTDLNKTCPKDSYPLPS 262
+A + EV KLL A I+EI +P WL N V+V+K+NGKWRMCVD TDLNK CPKD +PLP
Sbjct: 61 EAAKAEVKKLLKAGVIQEIDHPEWLANPVLVRKSNGKWRMCVDFTDLNKACPKDDFPLPR 120
Query: 263 IDKLVDGALGNELLSLMDAYSGYHQIKMHQSDEDKTTFMTARVNYCYQTMPFGLKNAGAT 322
ID+LVD +G EL+S +DAYSGYHQI+M+ +D KT F+T +C+ MPFGLKNAGAT
Sbjct: 121 IDQLVDSTVGCELMSFLDAYSGYHQIRMNPADIPKTAFITPFGTFCHLRMPFGLKNAGAT 180
Query: 323 YQRLMDRVFEGQVGRNMEVYVDDMIVKSVLGSNHHEDLMEAFGRIQKHNMRLNPEKCSFG 382
+ RL+ +V Q+GRN+E YVDD++VKS +H DL E F + M+LNPEKC FG
Sbjct: 181 FARLVYKVLYKQLGRNVEAYVDDIVVKSRKAFDHASDLQETFDNLCAAGMKLNPEKCVFG 240
Query: 383 IRGGKFLGFLITSRRIEINPDKCKAIQEMKSPSNVKEVQRLIGRITALSRFLLHSGDKSA 442
+R GK LGFL++ R IE NP+K AIQ+MK PS+V+EVQ+L GRI LSRFL + ++
Sbjct: 241 VRTGKLLGFLVSERGIEANPEKIDAIQQMKPPSSVREVQKLTGRIAVLSRFLSKAAERGL 300
Query: 443 PFIKCLKKNTTFEWNSECEEAFTRLKEMLSAPPVLSKPVQGLPLHLYFSVGDHAISSVIL 502
PF K L+ F W EC+ F LK+ L +PP L P G L LY + A+S+ ++
Sbjct: 301 PFFKTLRGAGKFNWTPECQAVFDELKQYLQSPPALISPASGSELLLYLAASPVAVSAALV 360
Query: 503 QEVDGEQKIVYFVSYHFRGRRS 524
QE D QK VYFVS +G ++
Sbjct: 361 QETDSGQKPVYFVSEALQGAKT 382
Score = 245 bits (626), Expect = 4e-63
Identities = 134/365 (36%), Positives = 203/365 (54%), Gaps = 24/365 (6%)
Query: 601 FLVELTPE---EGEKVSTQWILFVDGSSNDNGSEAGVTLQGPGELVLEQSLRFQFKTSNN 657
F+ E TP E E + W+++ DGS + G+ L P + + + R QF T+NN
Sbjct: 426 FVAEWTPAFAPEPEPIEQPWVMYSDGSWSHKGAGVAAVLTSPNGVPIWYAARLQFDTTNN 485
Query: 658 QAEYEALIAGLKLAIEVQIDSLPVRTDSPLVANQVNGEFQVKELALIKYVERVRLLMGRL 717
AEYEA+I GL+ A + I L +RTDS LV V+ F+ KE + +Y++ VR +
Sbjct: 486 AAEYEAIILGLRKAKALGIRRLLIRTDSKLVVGHVDKSFEAKEEGMKRYLDAVRSIEKCF 545
Query: 718 QQVVVEFVPRAQNQRADALAKLASTRKPGNNRSVIQETLANPNIEGEFVASVDRQETWMN 777
+ VE +PR QN+ A+ALAK A+ P ++ ++ E L P++ +
Sbjct: 546 SGITVEHLPRGQNEEANALAKSAACGGP-HSPGILFEVLYAPSVPMDS------------ 592
Query: 778 PIIDILAGEPSDVVKYSKAQRREAGHYTLLDGILFRRGFSSPLLRCLPPEKYEAVMTEVH 837
+++LA + +K + A Y ++ G +R G PLLRC+ + E + E+
Sbjct: 593 --LEVLA------IDQAKRLQFRATKYKMVSGQFYRSGILQPLLRCISFAEGEEMAKEIQ 644
Query: 838 EGVCASHIGGRSLASKVLRAGFYWPTIRKECAEFVRKCKKCQVFTDLPRAPPGQLVTISS 897
+G+C +H R +A KV R G YWPT+ K C E ++KC+ CQ P +L I+
Sbjct: 645 QGLCGAHQAARIVAFKVFRQGVYWPTVLKVCVEQIKKCESCQHHGRSQTTPQYELQPITP 704
Query: 898 PWPFAMWGVDLVGPFPTARSQMKFILVAVDYFTKWVEAEPLASITAAKIISFYWKRIVCR 957
WPFA WG+D++ PF AR+ KF +VAV+YF++W+EAEPL IT+A + F WK IV R
Sbjct: 705 IWPFARWGLDIIRPFLAARNGHKFAIVAVEYFSRWIEAEPLGVITSATVQKFVWKSIVSR 764
Query: 958 FGVPR 962
FGVP+
Sbjct: 765 FGVPK 769
>emb|CAE04320.1| OSJNBb0016D16.11 [Oryza sativa (japonica cultivar-group)]
gi|50928329|ref|XP_473692.1| OSJNBb0016D16.11 [Oryza
sativa (japonica cultivar-group)]
Length = 1748
Score = 384 bits (987), Expect = e-105
Identities = 218/515 (42%), Positives = 299/515 (57%), Gaps = 21/515 (4%)
Query: 8 LDLDTTFGEEENARTLSVKYLILETEGSYNMIIGRITLNRLCAVISTAQLAVKYPLSNGH 67
+ L TFG EN RT ++ + + + E +Y+ I+GR L + AV + +K P G
Sbjct: 840 ITLPVTFGTRENFRTENISFEVTDFETAYHAILGRPALAKFMAVPHYTYMMMKMP---GP 896
Query: 68 IGGIVVDQRIARECYCNAVDRYGKKNASVGHRCSEVETPEESLDPRGEGRVNRPTPIEET 127
G + + I + C D+ A S E + EG V T
Sbjct: 897 RGVLSLRSDIKQAVTC---DKESCDMAQTREMASAREDIRLAAATASEGEV------PAT 947
Query: 128 KDLKFGEKILKIGTKLSEEQEQRISKLLGDNLDLFAWSHKYMPGIDPNFICHRLALNPGV 187
K K GE K TK +K +N D+FAW MPGI I H L +
Sbjct: 948 KTSKSGESEAK--TKKIPLDPSNPTKT-ANNKDIFAWKPSDMPGIPREVIEHSLHVKEDA 1004
Query: 188 EPITQTRRRMGNEKEKAIQQEVNKLLAADFIREIKYPTWLVNVVIVKKANGKWRMCVDNT 247
+PI Q RR +++ AI++E+ KLLAA FI+E+ +P WL N V+V+K G+WRMCVD T
Sbjct: 1005 KPIKQRLRRFAQDRKDAIKEELTKLLAAGFIKEVHHPDWLANPVLVRKKTGQWRMCVDYT 1064
Query: 248 DLNKTCPKDSYPLPSIDKLVDGALGNELLSLMDAYSGYHQIKMHQSDEDKTTFMTARVNY 307
DLNK+CPKD + LP ID++VD G ELLS +D YSGYHQI++ +SD KT+F+T Y
Sbjct: 1065 DLNKSCPKDPFGLPRIDQVVDSTAGCELLSFLDCYSGYHQIRLKESDCLKTSFITPFGAY 1124
Query: 308 CYQTMPFGLKNAGATYQRLMDRVFEGQVGRNMEVYVDDMIVKSVLGSNHHEDLMEAFGRI 367
CY TMPFGLKNAGATYQR++ R F Q+GRN+E YVDD++VK+ + DL E F I
Sbjct: 1125 CYVTMPFGLKNAGATYQRMIQRCFSTQIGRNVEAYVDDVVVKTKQKDDLISDLEETFASI 1184
Query: 368 QKHNMRLNPEKCSFGIRGGKFLGFLITSRRIEINPDKCKAIQEMKSPSNVKEVQRLIGRI 427
+ M+LNPEKC+FG+ GK LGF+++ R I+ NP+K AI MK PS K+VQ+L G +
Sbjct: 1185 RAFRMKLNPEKCTFGVPSGKLLGFMVSHRGIQANPEKVTAILNMKPPSTQKDVQKLTGCM 1244
Query: 428 TALSRFLLHSGDKSAPFIKCLKKNTTFEWNSECEEAFTRLKEMLSAPPVLSKPVQGLPLH 487
ALSRF+ G++ PF K LKK F+W E ++AF K++L+ PPVL+ P PL
Sbjct: 1245 AALSRFVSRLGERGMPFFKLLKKTDDFQWGPEAQKAFEDFKKLLTEPPVLASPHPQEPLL 1304
Query: 488 LYFSVGDHAISSVILQEVDGE------QKIVYFVS 516
LY S +S+V++ E + E Q+ +YFVS
Sbjct: 1305 LYVSATSQVVSTVLVVEREEEGHVQKVQRPIYFVS 1339
Score = 198 bits (504), Expect = 6e-49
Identities = 121/354 (34%), Positives = 178/354 (50%), Gaps = 12/354 (3%)
Query: 617 WILFVDGSSNDNGSEAGVTLQGPGELVLEQSLRFQFKTSNNQAEYEALIAGLKLAIEVQI 676
W + DGS G+ AGV L P ++ F S+N AEYEAL+ GL++AI + I
Sbjct: 1389 WTMHFDGSKRLPGTGAGVVLISPTGRKIKLCAWIHFSASHNVAEYEALLHGLRIAISLGI 1448
Query: 677 DSLPVRTDSPLVANQVNGEFQVKELALIKYVERVRLLMGRLQQVVVEFVPRAQNQRADAL 736
L VR DS LV NQV E+ + ++ Y + VR + + + V R N+ AD L
Sbjct: 1449 KRLIVRGDSQLVVNQVMKEWSCLDDNMMAYRQEVRKWEDKFDGLELSHVLRHNNEAADRL 1508
Query: 737 AKLASTRKPGNNRSVIQETLANPNIEGEFVASVDRQET-------WMNPIIDILAGE--P 787
A S R+ + V E L P + + V W P+I L + P
Sbjct: 1509 ANFGSKREVAPS-DVFVEHLYTPTVPHKDTTQVAGTHDVAMVSADWREPLIRFLTSQELP 1567
Query: 788 SDVVKYSKAQRREAGHYTLLDGILFRRGFSSPLLRCLPPEKYEAVMTEVHEGVCASHIGG 847
D + + RR Y + + L+++ S L RC+ E+ ++ ++H G+C +H
Sbjct: 1568 QDKDEAERISRRSK-LYVMHEAELYKKSPSGILQRCVSLEEGRQLLKDIHSGICGNHAAA 1626
Query: 848 RSLASKVLRAGFYWPTIRKECAEFVRKCKKCQVFTDLPRAPPGQLVTISSPWPFAMWGVD 907
R++ K R GF+WPT + + VR C+ CQ F P +L TI WPFA+WG+D
Sbjct: 1627 RTIVGKAYRQGFFWPTAVSDADKIVRTCEGCQFFARQIHLPAQELQTIPLSWPFAVWGLD 1686
Query: 908 LVGPFPTARSQMKFILVAVDYFTKWVEAEPLASITAAKIISFYWKRIVCRFGVP 961
+VGPF A + VA+D F+KW+EA+P+ +ITA F+ IV RFGVP
Sbjct: 1687 MVGPFKKAVGGYTHLFVAIDKFSKWIEAKPVVTITADNARDFF-INIVHRFGVP 1739
>ref|XP_470757.1| putative gag-pol precursor [Oryza sativa] gi|18071370|gb|AAL58229.1|
putative gag-pol precursor [Oryza sativa]
Length = 2026
Score = 384 bits (987), Expect = e-105
Identities = 218/515 (42%), Positives = 299/515 (57%), Gaps = 21/515 (4%)
Query: 8 LDLDTTFGEEENARTLSVKYLILETEGSYNMIIGRITLNRLCAVISTAQLAVKYPLSNGH 67
+ L TFG EN RT ++ + + + E +Y+ I+GR L + AV + +K P G
Sbjct: 840 ITLPVTFGTRENFRTENISFEVADFETAYHAILGRPALAKFMAVPHYTYMMMKMP---GP 896
Query: 68 IGGIVVDQRIARECYCNAVDRYGKKNASVGHRCSEVETPEESLDPRGEGRVNRPTPIEET 127
G + + I + C D+ A S E + EG V T
Sbjct: 897 RGVLSLRSDIKQAVTC---DKESCDMAQTREMASAREDIRLAAATASEGEV------PAT 947
Query: 128 KDLKFGEKILKIGTKLSEEQEQRISKLLGDNLDLFAWSHKYMPGIDPNFICHRLALNPGV 187
K K GE K TK +K +N D+FAW MPGI I H L +
Sbjct: 948 KTSKSGESEAK--TKKIPLDPSNPTKT-ANNKDIFAWKPSDMPGIPREVIEHSLHVKEDA 1004
Query: 188 EPITQTRRRMGNEKEKAIQQEVNKLLAADFIREIKYPTWLVNVVIVKKANGKWRMCVDNT 247
+PI Q RR +++ AI++E+ KLLAA FI+E+ +P WL N V+V+K G+WRMCVD T
Sbjct: 1005 KPIKQRLRRFAQDRKDAIKEELTKLLAAGFIKEVHHPDWLANPVLVRKKTGQWRMCVDYT 1064
Query: 248 DLNKTCPKDSYPLPSIDKLVDGALGNELLSLMDAYSGYHQIKMHQSDEDKTTFMTARVNY 307
DLNK+CPKD + LP ID++VD G ELLS +D YSGYHQI++ +SD KT+F+T Y
Sbjct: 1065 DLNKSCPKDPFGLPRIDQVVDSTAGCELLSFLDCYSGYHQIRLKESDCLKTSFITPFGAY 1124
Query: 308 CYQTMPFGLKNAGATYQRLMDRVFEGQVGRNMEVYVDDMIVKSVLGSNHHEDLMEAFGRI 367
CY TMPFGLKNAGATYQR++ R F Q+GRN+E YVDD++VK+ + DL E F I
Sbjct: 1125 CYVTMPFGLKNAGATYQRMIQRCFSTQIGRNVEAYVDDVVVKTKQKDDLISDLEETFASI 1184
Query: 368 QKHNMRLNPEKCSFGIRGGKFLGFLITSRRIEINPDKCKAIQEMKSPSNVKEVQRLIGRI 427
+ M+LNPEKC+FG+ GK LGF+++ R I+ NP+K AI MK PS K+VQ+L G +
Sbjct: 1185 RAFRMKLNPEKCTFGVPSGKLLGFMVSHRGIQANPEKVTAILNMKPPSTQKDVQKLTGCM 1244
Query: 428 TALSRFLLHSGDKSAPFIKCLKKNTTFEWNSECEEAFTRLKEMLSAPPVLSKPVQGLPLH 487
ALSRF+ G++ PF K LKK F+W E ++AF K++L+ PPVL+ P PL
Sbjct: 1245 AALSRFVSRLGERGMPFFKLLKKTDDFQWGPEAQKAFEDFKKLLTEPPVLASPHPQEPLL 1304
Query: 488 LYFSVGDHAISSVILQEVDGE------QKIVYFVS 516
LY S +S+V++ E + E Q+ +YFVS
Sbjct: 1305 LYVSATSQVVSTVLVVEREEEGHVQKVQRPIYFVS 1339
Score = 204 bits (519), Expect = 1e-50
Identities = 124/354 (35%), Positives = 181/354 (51%), Gaps = 12/354 (3%)
Query: 617 WILFVDGSSNDNGSEAGVTLQGPGELVLEQSLRFQFKTSNNQAEYEALIAGLKLAIEVQI 676
W + DGS +G+ AGV L P L L F S+N AEYEAL+ GL++AI + I
Sbjct: 1443 WTMHFDGSKRLSGTGAGVVLISPTGERLSYVLWIHFSASHNVAEYEALLHGLRIAISLGI 1502
Query: 677 DSLPVRTDSPLVANQVNGEFQVKELALIKYVERVRLLMGRLQQVVVEFVPRAQNQRADAL 736
L VR DS LV NQV E+ + ++ Y + VR L + + + V R N+ AD L
Sbjct: 1503 KRLIVRGDSQLVVNQVMKEWSCLDDNMMAYRQEVRKLEDKFDGLELSHVLRHNNEAADRL 1562
Query: 737 AKLASTRKPGNNRSVIQETLANPNIEGEFVASVDR-------QETWMNPIIDILAGE--P 787
A S R+ + V E L P + + V + W P+I L + P
Sbjct: 1563 ANFGSKREVAPS-DVFVEHLYTPTVPHKDTTQVAGTHDVAMVEADWREPLIRFLTSQELP 1621
Query: 788 SDVVKYSKAQRREAGHYTLLDGILFRRGFSSPLLRCLPPEKYEAVMTEVHEGVCASHIGG 847
D + + RR Y + + L+++ S L RC+ E+ ++ ++H G+C +H
Sbjct: 1622 QDKDEAERISRRSK-LYVMHEAELYKKSPSGILQRCVSLEEGRQLLKDIHSGICGNHAAA 1680
Query: 848 RSLASKVLRAGFYWPTIRKECAEFVRKCKKCQVFTDLPRAPPGQLVTISSPWPFAMWGVD 907
R++ K R GF+WPT + + VR C+ CQ F P +L TI WPFA+WG+D
Sbjct: 1681 RTIVGKAYRQGFFWPTAVSDADKIVRTCEGCQFFARQIHLPAQELQTIPLSWPFAVWGLD 1740
Query: 908 LVGPFPTARSQMKFILVAVDYFTKWVEAEPLASITAAKIISFYWKRIVCRFGVP 961
+VGPF A + VA+D F+KW+EA+P+ +ITA F+ IV RFGVP
Sbjct: 1741 MVGPFKKAVGGYTHLFVAIDKFSKWIEAKPVVTITADNAPDFF-INIVHRFGVP 1793
>ref|XP_475035.1| OSJNBa0042F21.5 [Oryza sativa (japonica cultivar-group)]
gi|38347303|emb|CAE02298.2| OSJNBa0042F21.5 [Oryza sativa
(japonica cultivar-group)]
Length = 1950
Score = 383 bits (984), Expect = e-104
Identities = 217/515 (42%), Positives = 299/515 (57%), Gaps = 21/515 (4%)
Query: 8 LDLDTTFGEEENARTLSVKYLILETEGSYNMIIGRITLNRLCAVISTAQLAVKYPLSNGH 67
+ L TFG EN RT ++ + + + E +Y+ I+GR L + AV + +K P G
Sbjct: 773 ITLPVTFGTRENFRTENISFEVADFETAYHAILGRPALAKFMAVPHYTYMMMKMP---GP 829
Query: 68 IGGIVVDQRIARECYCNAVDRYGKKNASVGHRCSEVETPEESLDPRGEGRVNRPTPIEET 127
G + + I + C D+ A S E + EG I T
Sbjct: 830 RGVLSLRSDIKQAVTC---DKESCDMAQTREMASAREDIRLAAATASEGE------IPAT 880
Query: 128 KDLKFGEKILKIGTKLSEEQEQRISKLLGDNLDLFAWSHKYMPGIDPNFICHRLALNPGV 187
K K GE K TK +K +N D+FAW MPGI I H L +
Sbjct: 881 KTSKSGESEAK--TKKIPLDPSDPTKT-ANNKDIFAWKPSDMPGIPREVIEHSLHVKEDA 937
Query: 188 EPITQTRRRMGNEKEKAIQQEVNKLLAADFIREIKYPTWLVNVVIVKKANGKWRMCVDNT 247
+PI Q RR +++ AI++E+ KLLAA FI+E+ +P WL N V+V+K G+WRMCVD T
Sbjct: 938 KPIKQRLRRFAQDRKDAIKEELTKLLAAGFIKEVLHPDWLANPVLVRKKTGQWRMCVDYT 997
Query: 248 DLNKTCPKDSYPLPSIDKLVDGALGNELLSLMDAYSGYHQIKMHQSDEDKTTFMTARVNY 307
DLNK+CPKD + LP ID++VD G ELLS +D YSGYHQI++ +SD KT+F+T Y
Sbjct: 998 DLNKSCPKDPFGLPRIDQVVDSTAGCELLSFLDCYSGYHQIRLKESDCLKTSFITPFGAY 1057
Query: 308 CYQTMPFGLKNAGATYQRLMDRVFEGQVGRNMEVYVDDMIVKSVLGSNHHEDLMEAFGRI 367
CY TMPFGLKNAGATYQR++ R F Q+GRN+E YVDD++VK+ + DL E F I
Sbjct: 1058 CYVTMPFGLKNAGATYQRMIQRCFSTQIGRNVEAYVDDVVVKTKQKDDLISDLEETFASI 1117
Query: 368 QKHNMRLNPEKCSFGIRGGKFLGFLITSRRIEINPDKCKAIQEMKSPSNVKEVQRLIGRI 427
+ M+LNPEKC+FG+ GK LGF+++ R I+ NP+K AI MK PS K+VQ+L G +
Sbjct: 1118 RAFRMKLNPEKCTFGVPSGKLLGFMVSHRGIQANPEKVTAILNMKPPSTQKDVQKLTGCM 1177
Query: 428 TALSRFLLHSGDKSAPFIKCLKKNTTFEWNSECEEAFTRLKEMLSAPPVLSKPVQGLPLH 487
ALSRF+ G++ PF K LKK F+W E ++AF K++L+ PP+L+ P PL
Sbjct: 1178 AALSRFVSRLGERGMPFFKLLKKTDNFQWGPEAQKAFEDFKKLLTEPPILASPHPQEPLL 1237
Query: 488 LYFSVGDHAISSVILQEVDGE------QKIVYFVS 516
LY S +S+V++ E + E Q+ +YFVS
Sbjct: 1238 LYVSATSQVVSTVLVVEREEEGHVQKVQRPIYFVS 1272
Score = 203 bits (517), Expect = 2e-50
Identities = 130/369 (35%), Positives = 187/369 (50%), Gaps = 19/369 (5%)
Query: 604 ELTPEEGEKVSTQWILFVDGSSNDNGSEAGVTLQGPGELVLEQSLRFQFKTSNNQAEYEA 663
E TP E + W + DGS +G+ AGV L P L L F S+N AEYEA
Sbjct: 1366 EDTPAENME---HWTMHFDGSKRLSGTGAGVVLISPTGERLSYVLWIHFSASHNVAEYEA 1422
Query: 664 LIAGLKLAIEVQIDSLPVRTDSPLVANQVNGEFQVKELALIKYVERVRLLMGRLQQVVVE 723
L+ GL++AI + I L VR DS LV NQV E+ + ++ Y + VR L + + +
Sbjct: 1423 LLHGLRIAISLGIKRLIVRGDSQLVVNQVMKEWSCLDDNMMAYRQEVRKLEDKFDGLELS 1482
Query: 724 FVPRAQNQRADALAKLASTRKPGNNRSVIQETLANPNI---------EGEFVASVDRQET 774
V R N+ AD LA S R+ + V E L P + + VA V+
Sbjct: 1483 HVLRHNNEAADRLANFGSKREMAPS-DVFVEHLYTPTVPHKDTTQDADTHDVALVEAD-- 1539
Query: 775 WMNPIIDILAGE--PSDVVKYSKAQRREAGHYTLLDGILFRRGFSSPLLRCLPPEKYEAV 832
W P I L + P D + + RR Y + + L+++ S L RC+ E+ +
Sbjct: 1540 WREPFIRFLTSQELPQDKDEAERISRRSK-LYAMHEAELYKKSPSGILQRCVSLEEGRQL 1598
Query: 833 MTEVHEGVCASHIGGRSLASKVLRAGFYWPTIRKECAEFVRKCKKCQVFTDLPRAPPGQL 892
+ ++H G+C +H R++ K R GF+WPT + + VR C+ CQ F P +L
Sbjct: 1599 LKDIHSGICGNHAAARTIVGKAYRQGFFWPTAVSDADKIVRTCEGCQFFARQIHLPAQEL 1658
Query: 893 VTISSPWPFAMWGVDLVGPFPTARSQMKFILVAVDYFTKWVEAEPLASITAAKIISFYWK 952
TI WPFA+WG+D+VGPF A + VA+D F+KW+EA+P+ +ITA F+
Sbjct: 1659 QTIPLSWPFAVWGLDMVGPFKKAVGGYTHLFVAIDKFSKWIEAKPVVTITADNARDFF-I 1717
Query: 953 RIVCRFGVP 961
IV RFGVP
Sbjct: 1718 NIVHRFGVP 1726
>gb|AAP52913.1| putative retroelement [Oryza sativa (japonica cultivar-group)]
gi|37532648|ref|NP_920626.1| putative retroelement [Oryza
sativa (japonica cultivar-group)]
gi|19881548|gb|AAM00949.1| Putative retroelement [Oryza
sativa]
Length = 1945
Score = 382 bits (982), Expect = e-104
Identities = 218/515 (42%), Positives = 299/515 (57%), Gaps = 21/515 (4%)
Query: 8 LDLDTTFGEEENARTLSVKYLILETEGSYNMIIGRITLNRLCAVISTAQLAVKYPLSNGH 67
+ L TFG EN RT ++ + + + E +Y+ I+GR L + AV + +K P G
Sbjct: 786 ITLPVTFGTRENFRTENISFEVADFETAYHAILGRPALAKFMAVPHYTYMMMKMP---GP 842
Query: 68 IGGIVVDQRIARECYCNAVDRYGKKNASVGHRCSEVETPEESLDPRGEGRVNRPTPIEET 127
G + + I + C D+ A S E + EG I T
Sbjct: 843 RGVLSLRSDIKQAVTC---DKESCDMAQTREMASAREDIRLAAATASEGE------IPAT 893
Query: 128 KDLKFGEKILKIGTKLSEEQEQRISKLLGDNLDLFAWSHKYMPGIDPNFICHRLALNPGV 187
K K GE K TK +K +N D+FAW MPGI I H L +
Sbjct: 894 KTSKSGESEAK--TKKIPLDPSDPTKT-ANNKDIFAWKPSDMPGIPREVIEHSLHVKEDA 950
Query: 188 EPITQTRRRMGNEKEKAIQQEVNKLLAADFIREIKYPTWLVNVVIVKKANGKWRMCVDNT 247
+PI Q RR +++ AI++E+ KLLAA FI+E+ +P WL N V+V+K G+WRMCVD T
Sbjct: 951 KPIKQRLRRFAQDRKDAIKEELTKLLAAGFIKEVLHPDWLANPVLVRKKTGQWRMCVDYT 1010
Query: 248 DLNKTCPKDSYPLPSIDKLVDGALGNELLSLMDAYSGYHQIKMHQSDEDKTTFMTARVNY 307
DLNK+CPKD + LP ID++VD G ELLS +D YSGYHQI++ +SD KT+F+T Y
Sbjct: 1011 DLNKSCPKDPFGLPRIDQVVDSTAGCELLSFLDCYSGYHQIRLKESDCLKTSFITPFGAY 1070
Query: 308 CYQTMPFGLKNAGATYQRLMDRVFEGQVGRNMEVYVDDMIVKSVLGSNHHEDLMEAFGRI 367
CY TMPFGLKNAGATYQR++ R F Q+GRN+E YVDD++VK+ + DL E F I
Sbjct: 1071 CYVTMPFGLKNAGATYQRMIQRFFSTQIGRNVEAYVDDVVVKTKQKGDLISDLEETFVSI 1130
Query: 368 QKHNMRLNPEKCSFGIRGGKFLGFLITSRRIEINPDKCKAIQEMKSPSNVKEVQRLIGRI 427
+ M+LNPEKC+FG+ GK LGF+++ R I+ NP+K AI MK PS K+VQ+L G +
Sbjct: 1131 RAFRMKLNPEKCTFGVPSGKLLGFMVSHRGIQANPEKVTAILNMKPPSTQKDVQKLTGCM 1190
Query: 428 TALSRFLLHSGDKSAPFIKCLKKNTTFEWNSECEEAFTRLKEMLSAPPVLSKPVQGLPLH 487
ALSRF+ G++ PF K LKK F+W E ++AF K++L+ PPVL+ P PL
Sbjct: 1191 AALSRFVSRLGERGMPFFKLLKKTDNFQWGPEAQKAFEDFKKLLTEPPVLASPHPQEPLL 1250
Query: 488 LYFSVGDHAISSVILQEVDGE------QKIVYFVS 516
LY S +S+V++ E + E Q+ +YFVS
Sbjct: 1251 LYVSATSQVVSTVLVVEREEECHVQKVQRPIYFVS 1285
Score = 191 bits (485), Expect = 1e-46
Identities = 127/369 (34%), Positives = 180/369 (48%), Gaps = 37/369 (10%)
Query: 604 ELTPEEGEKVSTQWILFVDGSSNDNGSEAGVTLQGPGELVLEQSLRFQFKTSNNQAEYEA 663
E TP E + W + DGS +G+ AGV L P L L F S+N AEYEA
Sbjct: 1379 EDTPAENME---HWTMHFDGSKRLSGTGAGVVLISPTGERLSYVLWIHFSASHNVAEYEA 1435
Query: 664 LIAGLKLAIEVQIDSLPVRTDSPLVANQVNGEFQVKELALIKYVERVRLLMGRLQQVVVE 723
L+ GL++AI + I L VR DS LV NQV R L + + + +
Sbjct: 1436 LLHGLRIAISLGIKRLIVRGDSQLVVNQV------------------RKLEDKFEGLELS 1477
Query: 724 FVPRAQNQRADALAKLASTRKPGNNRSVIQETLANPNI---------EGEFVASVDRQET 774
V R N+ AD LA S R+ + V E L P + + VA V+
Sbjct: 1478 HVLRHNNEAADRLANFGSKRETAPS-DVFVEHLYTPTVPHKDTTQDADTHDVAMVEAD-- 1534
Query: 775 WMNPIIDILAGE--PSDVVKYSKAQRREAGHYTLLDGILFRRGFSSPLLRCLPPEKYEAV 832
W P I L + P D + + RR Y + + L+++ S L RC+ E+ +
Sbjct: 1535 WREPFIRFLTSQELPQDKDEAERISRRSK-LYVMHESELYKKSPSGILQRCVSLEEGRQL 1593
Query: 833 MTEVHEGVCASHIGGRSLASKVLRAGFYWPTIRKECAEFVRKCKKCQVFTDLPRAPPGQL 892
+ ++H G+C +H R++ K R GF+WPT + + VR C+ CQ F P +L
Sbjct: 1594 LKDIHSGICGNHAAARTIVGKAYRQGFFWPTAVSDADKIVRTCEGCQFFARQIHLPAQEL 1653
Query: 893 VTISSPWPFAMWGVDLVGPFPTARSQMKFILVAVDYFTKWVEAEPLASITAAKIISFYWK 952
TI WPFA+WG+D+VGPF A + VA+D F+KW+EA+P+ +ITA F+
Sbjct: 1654 QTIPLSWPFAVWGLDMVGPFKKAVGGYTHLFVAIDKFSKWIEAKPVVTITADNARDFF-I 1712
Query: 953 RIVCRFGVP 961
IV RFGVP
Sbjct: 1713 NIVHRFGVP 1721
>ref|XP_474675.1| OSJNBa0027O01.4 [Oryza sativa (japonica cultivar-group)]
gi|38346188|emb|CAD39529.2| OSJNBa0027O01.4 [Oryza sativa
(japonica cultivar-group)]
Length = 2013
Score = 382 bits (982), Expect = e-104
Identities = 218/515 (42%), Positives = 299/515 (57%), Gaps = 21/515 (4%)
Query: 8 LDLDTTFGEEENARTLSVKYLILETEGSYNMIIGRITLNRLCAVISTAQLAVKYPLSNGH 67
+ L TFG EN RT ++ + + + E +Y+ I+GR L + AV + +K P G
Sbjct: 836 ITLPVTFGTRENFRTENISFEVADFETAYHAILGRPALAKFMAVPHYTYMMMKMP---GP 892
Query: 68 IGGIVVDQRIARECYCNAVDRYGKKNASVGHRCSEVETPEESLDPRGEGRVNRPTPIEET 127
G + + I + C D+ A S E + EG V T
Sbjct: 893 RGVLSLRSDIKQAVTC---DKESCDMAQTREMASAREDIRLAAATASEGEV------PAT 943
Query: 128 KDLKFGEKILKIGTKLSEEQEQRISKLLGDNLDLFAWSHKYMPGIDPNFICHRLALNPGV 187
K K GE K TK +K +N D+FAW MPGI I H L +
Sbjct: 944 KISKSGESEAK--TKKIPLDPSDPTKT-ANNKDIFAWKPSDMPGIPREVIEHSLHVKEDA 1000
Query: 188 EPITQTRRRMGNEKEKAIQQEVNKLLAADFIREIKYPTWLVNVVIVKKANGKWRMCVDNT 247
+PI Q RR +++ AI++E+ KLLAA FI+E+ +P WL N V+V+K G+WRMCVD T
Sbjct: 1001 KPIKQRLRRFAQDRKDAIKEELTKLLAAGFIKEVLHPDWLANPVLVRKKTGQWRMCVDYT 1060
Query: 248 DLNKTCPKDSYPLPSIDKLVDGALGNELLSLMDAYSGYHQIKMHQSDEDKTTFMTARVNY 307
DLNK+CPKD + LP ID++VD G ELLS +D YSGYHQI++ +SD KT+F+T Y
Sbjct: 1061 DLNKSCPKDPFGLPRIDQVVDSTAGCELLSFLDCYSGYHQIRLKESDCLKTSFITPFGAY 1120
Query: 308 CYQTMPFGLKNAGATYQRLMDRVFEGQVGRNMEVYVDDMIVKSVLGSNHHEDLMEAFGRI 367
CY TMPFGLKNAGATYQR++ R F Q+GRN+E YVDD++VK+ + DL E F I
Sbjct: 1121 CYVTMPFGLKNAGATYQRMIQRCFSTQIGRNVEAYVDDVVVKTKQKDDLISDLEETFASI 1180
Query: 368 QKHNMRLNPEKCSFGIRGGKFLGFLITSRRIEINPDKCKAIQEMKSPSNVKEVQRLIGRI 427
+ M+LNPEKC+FG+ GK LGF+++ R I+ NP+K AI MK PS K+VQ+L G +
Sbjct: 1181 RAFRMKLNPEKCTFGVPSGKLLGFMVSHRGIQANPEKVTAILNMKPPSTQKDVQKLTGCM 1240
Query: 428 TALSRFLLHSGDKSAPFIKCLKKNTTFEWNSECEEAFTRLKEMLSAPPVLSKPVQGLPLH 487
ALSRF+ G++ PF K LKK F+W E ++AF K++L+ PPVL+ P PL
Sbjct: 1241 AALSRFVSRLGERGMPFFKLLKKTDDFQWGPEAQKAFEDFKKLLTEPPVLASPHPQEPLL 1300
Query: 488 LYFSVGDHAISSVILQEVDGE------QKIVYFVS 516
LY S +S+V++ E + E Q+ +YFVS
Sbjct: 1301 LYVSATSQVVSTVLVVEREEEGHVQKVQRPIYFVS 1335
Score = 206 bits (523), Expect = 4e-51
Identities = 129/367 (35%), Positives = 186/367 (50%), Gaps = 15/367 (4%)
Query: 604 ELTPEEGEKVSTQWILFVDGSSNDNGSEAGVTLQGPGELVLEQSLRFQFKTSNNQAEYEA 663
E TP E + W + DGS +G+ AGV L P L L F S+N AEYEA
Sbjct: 1429 EDTPAENME---HWTMHFDGSKRLSGTGAGVVLISPTGERLSYVLWIHFSASHNVAEYEA 1485
Query: 664 LIAGLKLAIEVQIDSLPVRTDSPLVANQVNGEFQVKELALIKYVERVRLLMGRLQQVVVE 723
L+ GL++AI + I L VR DS LV NQV E+ + ++ Y + VR L + + +
Sbjct: 1486 LLHGLRIAISLGIKRLIVRGDSQLVVNQVMKEWSYLDDNMMAYRQEVRKLEDKFDGLELS 1545
Query: 724 FVPRAQNQRADALAKLASTRKPGNNRSVIQETLANPNIEGEFVASVDR-------QETWM 776
V R N+ AD LA S R+ + V E L P + + V + W
Sbjct: 1546 HVLRHNNEAADRLANFGSKREAAPS-DVFVEHLYTPTVPHKDTTQVAGTHDAAMVEVDWR 1604
Query: 777 NPIIDILAGE--PSDVVKYSKAQRREAGHYTLLDGILFRRGFSSPLLRCLPPEKYEAVMT 834
P+I L + P D + + RR Y L + L+++ S L RC+ E+ ++
Sbjct: 1605 EPLIRFLTSQELPQDKDEAERISRRSK-LYVLHEAELYKKSPSGILQRCVSLEEGRQLLK 1663
Query: 835 EVHEGVCASHIGGRSLASKVLRAGFYWPTIRKECAEFVRKCKKCQVFTDLPRAPPGQLVT 894
++H G+C +H R++ K R GF+WPT + + VR C+ CQ F P +L T
Sbjct: 1664 DIHSGICGNHAAARTIVGKAYRQGFFWPTAVSDADKIVRTCEGCQFFARQIHLPAQELQT 1723
Query: 895 ISSPWPFAMWGVDLVGPFPTARSQMKFILVAVDYFTKWVEAEPLASITAAKIISFYWKRI 954
I WPFA+WG+D+VGPF A + VA+D F+KW+EA+P+ +ITA F+ I
Sbjct: 1724 IPLSWPFAVWGLDMVGPFKKAVGGYTHLFVAIDKFSKWIEAKPVVTITADNARDFF-INI 1782
Query: 955 VCRFGVP 961
V RFGVP
Sbjct: 1783 VHRFGVP 1789
>ref|XP_462713.1| OSJNBa0079F16.18 [Oryza sativa (japonica cultivar-group)]
gi|39546270|emb|CAD39817.3| OSJNBa0079F16.18 [Oryza
sativa (japonica cultivar-group)]
gi|32487832|emb|CAE05063.1| OSJNBa0094P09.2 [Oryza sativa
(japonica cultivar-group)]
Length = 1802
Score = 382 bits (982), Expect = e-104
Identities = 218/516 (42%), Positives = 299/516 (57%), Gaps = 27/516 (5%)
Query: 10 LDTTFGEEENARTLSVKYLILETEGSYNMIIGRITLNRLCAVISTAQLAVKYPLSNGHIG 69
L TFG EN RT ++ + + + E +Y+ I+GR L + AV + +K P G G
Sbjct: 842 LPVTFGTRENFRTENISFEVADFETAYHAILGRPALAKFMAVPHYTYMMMKMP---GPRG 898
Query: 70 GIVVDQRIARECYCNAVDRYGKKNASVGHRCSEVETPEESLDPRGEGRVNRPTPIEETKD 129
+ + I + C D+ A S E + EG V TK
Sbjct: 899 VLSLRSDIKQAVTC---DKESCDMAQTREMASAREDIRLAAATASEGEV------PATKI 949
Query: 130 LKFGE---KILKIGTKLSEEQEQRISKLLGDNLDLFAWSHKYMPGIDPNFICHRLALNPG 186
K GE K KI S+ S +N D+FAW MPGI I H L +
Sbjct: 950 SKSGESEAKTKKIPLDPSD------STKTANNKDIFAWKPSDMPGIPREVIEHSLHVKQD 1003
Query: 187 VEPITQTRRRMGNEKEKAIQQEVNKLLAADFIREIKYPTWLVNVVIVKKANGKWRMCVDN 246
+PI Q RR +++ AI++E+ KLLAA FI+E+ +P WL N V+V+K G+WRMCVD
Sbjct: 1004 AKPIKQRLRRFAQDRKDAIKEELTKLLAAGFIKEVLHPDWLANPVLVRKKTGQWRMCVDY 1063
Query: 247 TDLNKTCPKDSYPLPSIDKLVDGALGNELLSLMDAYSGYHQIKMHQSDEDKTTFMTARVN 306
TDLNK+CPKD + LP ID++VD G ELLS +D YSGYHQI++ +SD KT+F+T
Sbjct: 1064 TDLNKSCPKDPFGLPRIDQVVDSTAGCELLSFLDCYSGYHQIRLKESDCLKTSFITPFGA 1123
Query: 307 YCYQTMPFGLKNAGATYQRLMDRVFEGQVGRNMEVYVDDMIVKSVLGSNHHEDLMEAFGR 366
YCY TMPFGLKNAGATYQR++ R F Q+GRN+E YVDD++VK+ + DL E F
Sbjct: 1124 YCYVTMPFGLKNAGATYQRMIQRCFSTQIGRNVEAYVDDVVVKTKQKDDLISDLEETFAS 1183
Query: 367 IQKHNMRLNPEKCSFGIRGGKFLGFLITSRRIEINPDKCKAIQEMKSPSNVKEVQRLIGR 426
I+ M+LNPEKC+FG+ GK LGF+++ R I+ NP+K AI MK PS K+VQ+L G
Sbjct: 1184 IRAFRMKLNPEKCTFGVPSGKLLGFMVSHRGIQANPEKVTAILNMKPPSTQKDVQKLTGC 1243
Query: 427 ITALSRFLLHSGDKSAPFIKCLKKNTTFEWNSECEEAFTRLKEMLSAPPVLSKPVQGLPL 486
+ ALSRF+ G++ PF K LKK F+W E ++AF K++L+ PPVL+ P PL
Sbjct: 1244 MAALSRFVSRLGERGMPFFKLLKKTDDFQWGPEAQKAFEDFKKLLTEPPVLASPYPQEPL 1303
Query: 487 HLYFSVGDHAISSVILQEVDGE------QKIVYFVS 516
LY + +S+V++ E + E Q+ +YFVS
Sbjct: 1304 LLYVAATSQVVSTVLVVEREEEGHVQKVQRPIYFVS 1339
Score = 204 bits (519), Expect = 1e-50
Identities = 124/354 (35%), Positives = 181/354 (51%), Gaps = 12/354 (3%)
Query: 617 WILFVDGSSNDNGSEAGVTLQGPGELVLEQSLRFQFKTSNNQAEYEALIAGLKLAIEVQI 676
W + DGS +G+ AGV L P L L F S+N AEYEAL+ GL++AI + I
Sbjct: 1443 WTMHFDGSKRLSGTGAGVVLISPTGERLSYVLWIHFSASHNVAEYEALLHGLRIAISLGI 1502
Query: 677 DSLPVRTDSPLVANQVNGEFQVKELALIKYVERVRLLMGRLQQVVVEFVPRAQNQRADAL 736
L VR DS LV NQV E+ + ++ Y + VR L + + + V R N+ AD L
Sbjct: 1503 KRLIVRGDSQLVVNQVMKEWSCLDDNMMAYRQEVRKLEDKFDGLELSHVLRHNNEAADRL 1562
Query: 737 AKLASTRKPGNNRSVIQETLANPNIEGEFVASVDR-------QETWMNPIIDILAGE--P 787
A S R+ + V E L P + + V + W P+I L + P
Sbjct: 1563 ANFGSKREVAPS-DVFVEHLYTPTVPHKDTTQVAGTHDVAMVEADWREPLIRFLTSQELP 1621
Query: 788 SDVVKYSKAQRREAGHYTLLDGILFRRGFSSPLLRCLPPEKYEAVMTEVHEGVCASHIGG 847
D + + RR Y + + L+++ S L RC+ E+ ++ ++H G+C +H
Sbjct: 1622 QDKDEAERISRRSK-LYVMHEAELYKKSPSGILQRCVSLEEGRQLLKDIHSGICGNHAAA 1680
Query: 848 RSLASKVLRAGFYWPTIRKECAEFVRKCKKCQVFTDLPRAPPGQLVTISSPWPFAMWGVD 907
R++ K R GF+WPT + + VR C+ CQ F P +L TI WPFA+WG+D
Sbjct: 1681 RTIVGKAYRQGFFWPTAVSDADKIVRTCEGCQFFARQIHLPAQELQTIPLSWPFAVWGLD 1740
Query: 908 LVGPFPTARSQMKFILVAVDYFTKWVEAEPLASITAAKIISFYWKRIVCRFGVP 961
+VGPF A + VA+D F+KW+EA+P+ +ITA F+ IV RFGVP
Sbjct: 1741 MVGPFKKAVGGYTHLFVAIDKFSKWIEAKPVVTITADNARDFF-INIVHRFGVP 1793
>gb|AAN04936.1| Putative retroelement [Oryza sativa (japonica cultivar-group)]
Length = 1479
Score = 382 bits (982), Expect = e-104
Identities = 218/515 (42%), Positives = 299/515 (57%), Gaps = 21/515 (4%)
Query: 8 LDLDTTFGEEENARTLSVKYLILETEGSYNMIIGRITLNRLCAVISTAQLAVKYPLSNGH 67
+ L TFG EN RT ++ + + + E +Y+ I+GR L + AV + +K P G
Sbjct: 786 ITLPVTFGTRENFRTENISFEVADFETAYHAILGRPALAKFMAVPHYTYMMMKMP---GP 842
Query: 68 IGGIVVDQRIARECYCNAVDRYGKKNASVGHRCSEVETPEESLDPRGEGRVNRPTPIEET 127
G + + I + C D+ A S E + EG I T
Sbjct: 843 RGVLSLRSDIKQAVTC---DKESCDMAQTREMASAREDIRLAAATASEGE------IPAT 893
Query: 128 KDLKFGEKILKIGTKLSEEQEQRISKLLGDNLDLFAWSHKYMPGIDPNFICHRLALNPGV 187
K K GE K TK +K +N D+FAW MPGI I H L +
Sbjct: 894 KTSKSGESEAK--TKKIPLDPSDPTKT-ANNKDIFAWKPSDMPGIPREVIEHSLHVKEDA 950
Query: 188 EPITQTRRRMGNEKEKAIQQEVNKLLAADFIREIKYPTWLVNVVIVKKANGKWRMCVDNT 247
+PI Q RR +++ AI++E+ KLLAA FI+E+ +P WL N V+V+K G+WRMCVD T
Sbjct: 951 KPIKQRLRRFAQDRKDAIKEELTKLLAAGFIKEVLHPDWLANPVLVRKKTGQWRMCVDYT 1010
Query: 248 DLNKTCPKDSYPLPSIDKLVDGALGNELLSLMDAYSGYHQIKMHQSDEDKTTFMTARVNY 307
DLNK+CPKD + LP ID++VD G ELLS +D YSGYHQI++ +SD KT+F+T Y
Sbjct: 1011 DLNKSCPKDPFGLPRIDQVVDSTAGCELLSFLDCYSGYHQIRLKESDCLKTSFITPFGAY 1070
Query: 308 CYQTMPFGLKNAGATYQRLMDRVFEGQVGRNMEVYVDDMIVKSVLGSNHHEDLMEAFGRI 367
CY TMPFGLKNAGATYQR++ R F Q+GRN+E YVDD++VK+ + DL E F I
Sbjct: 1071 CYVTMPFGLKNAGATYQRMIQRFFSTQIGRNVEAYVDDVVVKTKQKGDLISDLEETFVSI 1130
Query: 368 QKHNMRLNPEKCSFGIRGGKFLGFLITSRRIEINPDKCKAIQEMKSPSNVKEVQRLIGRI 427
+ M+LNPEKC+FG+ GK LGF+++ R I+ NP+K AI MK PS K+VQ+L G +
Sbjct: 1131 RAFRMKLNPEKCTFGVPSGKLLGFMVSHRGIQANPEKVTAILNMKPPSTQKDVQKLTGCM 1190
Query: 428 TALSRFLLHSGDKSAPFIKCLKKNTTFEWNSECEEAFTRLKEMLSAPPVLSKPVQGLPLH 487
ALSRF+ G++ PF K LKK F+W E ++AF K++L+ PPVL+ P PL
Sbjct: 1191 AALSRFVSRLGERGMPFFKLLKKTDNFQWGPEAQKAFEDFKKLLTEPPVLASPHPQEPLL 1250
Query: 488 LYFSVGDHAISSVILQEVDGE------QKIVYFVS 516
LY S +S+V++ E + E Q+ +YFVS
Sbjct: 1251 LYVSATSQVVSTVLVVEREEECHVQKVQRPIYFVS 1285
Score = 63.9 bits (154), Expect = 2e-08
Identities = 42/103 (40%), Positives = 55/103 (52%), Gaps = 3/103 (2%)
Query: 604 ELTPEEGEKVSTQWILFVDGSSNDNGSEAGVTLQGPGELVLEQSLRFQFKTSNNQAEYEA 663
E TP E + W + DGS +G+ AGV L P L L F S+N AEYEA
Sbjct: 1379 EDTPAENME---HWTMHFDGSKRLSGTGAGVVLISPTGERLSYVLWIHFSASHNVAEYEA 1435
Query: 664 LIAGLKLAIEVQIDSLPVRTDSPLVANQVNGEFQVKELALIKY 706
L+ GL++AI + I L VR DS LV NQV E+ + ++ Y
Sbjct: 1436 LLHGLRIAISLGIKRLIVRGDSQLVVNQVMKEWSCIDDNMMAY 1478
>ref|NP_918169.1| putative gag-pol polyprotein [Oryza sativa (japonica cultivar-group)]
Length = 2012
Score = 382 bits (981), Expect = e-104
Identities = 218/515 (42%), Positives = 299/515 (57%), Gaps = 21/515 (4%)
Query: 8 LDLDTTFGEEENARTLSVKYLILETEGSYNMIIGRITLNRLCAVISTAQLAVKYPLSNGH 67
+ L TFG EN RT ++ + + + E +Y+ I+GR L + AV + +K P G
Sbjct: 835 ITLPVTFGTRENFRTENISFEVADFETAYHAILGRPALAKFMAVPHYTYMMMKMPGPRGV 894
Query: 68 IGGIVVDQRIARECYCNAVDRYGKKNASVGHRCSEVETPEESLDPRGEGRVNRPTPIEET 127
+ + D + A C D+ A S E + EG I T
Sbjct: 895 LS-LRSDVKQAVTC-----DKESCDMAQTREMASAREDIRLAAATASEGE------IPAT 942
Query: 128 KDLKFGEKILKIGTKLSEEQEQRISKLLGDNLDLFAWSHKYMPGIDPNFICHRLALNPGV 187
K K GE K TK +K +N D+FAW MPGI I H L +
Sbjct: 943 KTSKSGESEAK--TKKIPLDPSDPTKT-ANNKDIFAWKPSDMPGIPREVIEHSLHVKEDA 999
Query: 188 EPITQTRRRMGNEKEKAIQQEVNKLLAADFIREIKYPTWLVNVVIVKKANGKWRMCVDNT 247
+PI Q RR +++ AI++E+ KLLAA FI+E+ +P WL N V+V+K G+W MCVD T
Sbjct: 1000 KPIKQRLRRFAQDRKDAIKEELTKLLAAGFIKEVLHPDWLANPVLVRKKTGQWLMCVDYT 1059
Query: 248 DLNKTCPKDSYPLPSIDKLVDGALGNELLSLMDAYSGYHQIKMHQSDEDKTTFMTARVNY 307
DLNK+CPKD + LP ID++VD G ELLS +D YSGYHQI++ +SD KT+F+T Y
Sbjct: 1060 DLNKSCPKDPFGLPRIDQVVDSTAGCELLSFLDCYSGYHQIRLKESDCLKTSFITPFGAY 1119
Query: 308 CYQTMPFGLKNAGATYQRLMDRVFEGQVGRNMEVYVDDMIVKSVLGSNHHEDLMEAFGRI 367
CY TMPFGLKNAGATYQR++ R F Q+GRN+E YVDD++VK+ + DL E F I
Sbjct: 1120 CYVTMPFGLKNAGATYQRMIQRCFSTQIGRNVEAYVDDVVVKTKQKDDLISDLEETFASI 1179
Query: 368 QKHNMRLNPEKCSFGIRGGKFLGFLITSRRIEINPDKCKAIQEMKSPSNVKEVQRLIGRI 427
+ M+LNPEKC+FG+ GK LGF+++ R I+ NP+K AI MKSPS K+VQ+L G +
Sbjct: 1180 RAFRMKLNPEKCTFGVPSGKLLGFMVSHRGIQANPEKVTAILNMKSPSTQKDVQKLTGCM 1239
Query: 428 TALSRFLLHSGDKSAPFIKCLKKNTTFEWNSECEEAFTRLKEMLSAPPVLSKPVQGLPLH 487
ALSRF+ G++ PF K LKK +F W E ++AF K++L+ PPVL+ P PL
Sbjct: 1240 AALSRFVSRLGERGMPFFKLLKKTDSFRWGPEAQKAFEDFKKLLTEPPVLASPHPQEPLL 1299
Query: 488 LYFSVGDHAISSVILQEVDGE------QKIVYFVS 516
LY S +S+V++ E + E Q+ +YFVS
Sbjct: 1300 LYVSATSQVVSTVLVVEREEEGHVQKVQRPIYFVS 1334
Score = 206 bits (523), Expect = 4e-51
Identities = 131/369 (35%), Positives = 188/369 (50%), Gaps = 19/369 (5%)
Query: 604 ELTPEEGEKVSTQWILFVDGSSNDNGSEAGVTLQGPGELVLEQSLRFQFKTSNNQAEYEA 663
E TP E + W + DGS +G+ AGV L P L L F S+N AEYEA
Sbjct: 1428 EDTPAENME---HWTMHFDGSKRLSGTGAGVVLISPTGERLSYVLWIHFSASHNVAEYEA 1484
Query: 664 LIAGLKLAIEVQIDSLPVRTDSPLVANQVNGEFQVKELALIKYVERVRLLMGRLQQVVVE 723
L+ GL++AI + I L VR DS LV NQV E+ + ++ Y + VR L + + +
Sbjct: 1485 LLHGLRIAISLGIKRLIVRGDSQLVVNQVMKEWSCLDDNMMAYRQEVRKLEDKFDGLELS 1544
Query: 724 FVPRAQNQRADALAKLASTRKPGNNRSVIQETLANPNIE---------GEFVASVDRQET 774
V R N+ AD LA S R+ + V E L +P + VA V+
Sbjct: 1545 HVLRHNNEAADRLANFGSKREAAPS-DVFVEHLYSPTVPHKDATQAAGAHDVAMVEAD-- 1601
Query: 775 WMNPIIDILAGE--PSDVVKYSKAQRREAGHYTLLDGILFRRGFSSPLLRCLPPEKYEAV 832
W P+I L + P D + + RR Y L + L+++ S L RC+ E+ +
Sbjct: 1602 WREPLIRFLTSQELPQDKDEAERISRRSK-LYVLHEAELYKKSPSGILQRCVSLEEGRQL 1660
Query: 833 MTEVHEGVCASHIGGRSLASKVLRAGFYWPTIRKECAEFVRKCKKCQVFTDLPRAPPGQL 892
+ ++H G+C +H R++ K R GF+WPT + + VR C+ CQ F P +L
Sbjct: 1661 LKDIHSGICGNHAAARTIVGKAYRQGFFWPTAVSDADKIVRTCEGCQFFARQIHLPAQEL 1720
Query: 893 VTISSPWPFAMWGVDLVGPFPTARSQMKFILVAVDYFTKWVEAEPLASITAAKIISFYWK 952
TI WPFA+WG+D+VGPF A + VA+D F+KW+EA+P+ +ITA F+
Sbjct: 1721 QTIPLSWPFAVWGLDMVGPFKKAVGGYTHLFVAIDKFSKWIEAKPVVTITADNARDFF-I 1779
Query: 953 RIVCRFGVP 961
IV RFGVP
Sbjct: 1780 NIVHRFGVP 1788
Database: nr
Posted date: Jul 5, 2005 12:34 AM
Number of letters in database: 863,360,394
Number of sequences in database: 2,540,612
Lambda K H
0.323 0.138 0.418
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,623,098,054
Number of Sequences: 2540612
Number of extensions: 68486694
Number of successful extensions: 190159
Number of sequences better than 10.0: 34923
Number of HSP's better than 10.0 without gapping: 2465
Number of HSP's successfully gapped in prelim test: 32458
Number of HSP's that attempted gapping in prelim test: 179073
Number of HSP's gapped (non-prelim): 38951
length of query: 963
length of database: 863,360,394
effective HSP length: 138
effective length of query: 825
effective length of database: 512,755,938
effective search space: 423023648850
effective search space used: 423023648850
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 80 (35.4 bits)
Lotus: description of TM0189.12