BLAST2 result
BLASTP 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TM0185.17
(469 letters)
Database: nr
2,540,612 sequences; 863,360,394 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAR13298.1| gag-pol polyprotein [Phaseolus vulgaris] 304 4e-81
gb|AAT38766.1| putative polyprotein [Solanum demissum] 281 3e-74
gb|AAM22635.1| Gag and Pol [Zea mays] 279 2e-73
emb|CAE04541.2| OSJNBa0040D17.9 [Oryza sativa (japonica cultivar... 275 2e-72
ref|NP_914435.1| putative retrovirous-related pol polyprotein fr... 275 2e-72
gb|AAR01682.1| putative gag and pol protein [Oryza sativa (japon... 275 3e-72
ref|NP_918918.1| putative retrovirus-related pol polyprotein fro... 274 4e-72
ref|XP_493793.1| unnamed protein product [Oryza sativa (japonica... 274 5e-72
emb|CAD40744.2| OSJNBa0072D21.4 [Oryza sativa (japonica cultivar... 274 5e-72
gb|AAP20858.1| retrotransposon protein, putative, Ty1-copia sub-... 274 5e-72
ref|XP_471071.1| OSJNBa0020P07.16 [Oryza sativa (japonica cultiv... 274 5e-72
ref|XP_463420.1| putative gag and pol [Oryza sativa (japonica cu... 274 5e-72
ref|NP_918682.1| putative retrovirus-related pol polyprotein fro... 274 5e-72
gb|AAU44026.2| putative polyprotein [Oryza sativa (japonica cult... 274 5e-72
gb|AAX96223.1| retrotransposon protein, putative, Ty1-copia sub-... 274 5e-72
ref|XP_475988.1| putative polyprotein [Oryza sativa (japonica cu... 273 6e-72
emb|CAE02325.2| OSJNBb0112E13.7 [Oryza sativa (japonica cultivar... 273 8e-72
gb|AAR01716.1| putative Gag and Pol polyprotein [Oryza sativa (j... 273 1e-71
ref|XP_468569.1| Putative polyprotein from transposon TNT [Oryza... 273 1e-71
ref|NP_918597.1| putative retrovirus-related pol polyprotein [Or... 273 1e-71
>gb|AAR13298.1| gag-pol polyprotein [Phaseolus vulgaris]
Length = 1290
Score = 304 bits (778), Expect = 4e-81
Identities = 153/298 (51%), Positives = 216/298 (72%)
Query: 147 SGKAVMTCLYVDDMLIFGTDLNEVEKTKSFLSNSFDMKDLGEADVILGIKIIRDGEIIGL 206
+G+ V+ CLYVDDMLIFGT + V KTK FL + F+MKD+GEA VILG+KIIR G+ I L
Sbjct: 956 NGEYVIICLYVDDMLIFGTCNDIVFKTKLFLGSKFEMKDMGEASVILGVKIIRKGDSILL 1015
Query: 207 SQSHYIEKVLKKFDHFDCKSVSTPFDQNTKLQPHKRCPVAQLEYSKAIRCLMYAMTCTRP 266
SQ Y EK+LKKF ++D KSVSTP+D N+KL+ ++ ++Q +Y++ I L++ M+ +RP
Sbjct: 1016 SQEKYTEKLLKKFGYYDFKSVSTPYDANSKLKKNRGESISQTQYAQIIGSLLHLMSFSRP 1075
Query: 267 DIAYVVGRLSRYTCNPSKDHWHVVNRVLKYLNGTINYSLIYNGYPSVLEGYTYASWVTCV 326
DIAY VGRLSR T PS+DHW + R++KYL GT++Y++ Y+G+P+VLEGY+ A+W++
Sbjct: 1076 DIAYAVGRLSRCTQCPSQDHWEALARLMKYLRGTMDYAIEYSGFPAVLEGYSDANWISDS 1135
Query: 327 KDHASTSG*IFNLGGGAVSWGSKKQTCIADSTMAAEFIALAACSKETV*LRNLLYEILIW 386
+ STSG +F LGGGAV+W S +QT IA STM +EF+AL E L+N L I +
Sbjct: 1136 DETKSTSGYVFTLGGGAVTWRSARQTIIARSTMESEFVALEMAGSEAEWLKNFLANIPLG 1195
Query: 387 PKLMRQVSIHCDSQCTLSKAYSQVYNGKSRHIVLRHSHVKDLITNGVISIVFVRTVKE 444
K VS+HCD Q ++ A ++ YNGK+RHI LRH+ VK L+ +G ISI +V++ ++
Sbjct: 1196 MKPTPSVSMHCDCQSAIAIAKNKSYNGKNRHIQLRHNLVKQLLKSGTISIDYVKSERD 1253
>gb|AAT38766.1| putative polyprotein [Solanum demissum]
Length = 1415
Score = 281 bits (719), Expect = 3e-74
Identities = 140/291 (48%), Positives = 197/291 (67%)
Query: 151 VMTCLYVDDMLIFGTDLNEVEKTKSFLSNSFDMKDLGEADVILGIKIIRDGEIIGLSQSH 210
V+ LYVDDMLI D++++ TK LS+ F MKDLG ADVILGI+I++ + + LSQSH
Sbjct: 1018 VIVFLYVDDMLIMSKDIDDINATKRMLSSKFAMKDLGVADVILGIRILKTPQGLALSQSH 1077
Query: 211 YIEKVLKKFDHFDCKSVSTPFDQNTKLQPHKRCPVAQLEYSKAIRCLMYAMTCTRPDIAY 270
YIEK+L KF + + V P D + Q + +QLEY++ + LMY M CTRPDI+
Sbjct: 1078 YIEKILDKFKYLNFNVVKIPIDLSCTFQKNVGESDSQLEYARVLGSLMYIMNCTRPDISC 1137
Query: 271 VVGRLSRYTCNPSKDHWHVVNRVLKYLNGTINYSLIYNGYPSVLEGYTYASWVTCVKDHA 330
+ +LSR+T NP++ HW + VL YL + +Y+L YN YP+++EGY+ A+W+T +
Sbjct: 1138 AISKLSRFTSNPNQTHWMAMKHVLGYLKHSQHYALHYNKYPAMIEGYSDANWITGSNEVK 1197
Query: 331 STSG*IFNLGGGAVSWGSKKQTCIADSTMAAEFIALAACSKETV*LRNLLYEILIWPKLM 390
STSG +F LG GAVSW S KQTCIA STM ++FIAL KE L+N L +I WPK +
Sbjct: 1198 STSGYVFTLGRGAVSWKSSKQTCIARSTMESKFIALDKAGKEAEWLQNFLEDIPFWPKPV 1257
Query: 391 RQVSIHCDSQCTLSKAYSQVYNGKSRHIVLRHSHVKDLITNGVISIVFVRT 441
+ IHCDSQ + +A S +YNGKSRHI R + V+ L+++G+I+I +V++
Sbjct: 1258 GPICIHCDSQAAIGRARSVMYNGKSRHIRWRQNTVRQLLSSGIITIDYVKS 1308
>gb|AAM22635.1| Gag and Pol [Zea mays]
Length = 1264
Score = 279 bits (713), Expect = 2e-73
Identities = 142/303 (46%), Positives = 201/303 (65%), Gaps = 1/303 (0%)
Query: 148 GKAVMTCLYVDDMLIFGTDLNEVEKTKSFLSNSFDMKDLGEADVILGIKIIRDGEIIGLS 207
G+ V+ CLYVDD+LIFGT+++ + + KSFLS SFDMKDLGEADVIL IK+I+ I LS
Sbjct: 941 GEGVILCLYVDDILIFGTNIDVINEVKSFLSKSFDMKDLGEADVILNIKLIKADGGITLS 1000
Query: 208 QSHYIEKVLKKFDHFDCKSVSTPFDQNTKLQPHKRCPVAQLEYSKAIRCLMYAMTCTRPD 267
QSHY+EKVLK+F +CK TP+D + L+ +KR + QL YS+ + LMY TRPD
Sbjct: 1001 QSHYVEKVLKRFGFSECKPSPTPYDPSVTLRKNKRIGLDQLRYSQIVGSLMYLAGATRPD 1060
Query: 268 IAYVVGRLSRYTCNPSKDHWHVVNRVLKYLNGTINYSLIYNGYPSVLEGYTYASWVTCVK 327
I++ V +LSR+ NP DHWH + RV++YL GT++Y + Y+G +VLEGY+ ++W++
Sbjct: 1061 ISFAVSKLSRFMSNPGTDHWHALERVMRYLQGTMSYGIHYSGQHAVLEGYSDSNWISDAD 1120
Query: 328 DHASTSG*IFNLGGGAVSWGSKKQTCIADSTMAAEFIALAACSKETV*LRNLLYEILIWP 387
+ +TSG +F +GGGAVSW S KQT + STM AE AL + E LR LL ++ +
Sbjct: 1121 ELYATSGYVFTIGGGAVSWRSCKQTILTRSTMEAELAALDTATVEAEWLRELLMDLPVVE 1180
Query: 388 KLMRQVSIHCDSQCTLSKAYSQVYNGK-SRHIVLRHSHVKDLITNGVISIVFVRTVKESC 446
K + + ++CD+Q ++K S NGK SRH+ R V+ L +GVIS+ ++ T K
Sbjct: 1181 KPIPAILMNCDNQTVIAKVTSSKDNGKSSRHVKRRLKSVRKLRNSGVISVTYISTDKNLA 1240
Query: 447 RSF 449
F
Sbjct: 1241 DPF 1243
>emb|CAE04541.2| OSJNBa0040D17.9 [Oryza sativa (japonica cultivar-group)]
gi|50930491|ref|XP_474773.1| OSJNBa0040D17.9 [Oryza
sativa (japonica cultivar-group)]
Length = 1319
Score = 275 bits (704), Expect = 2e-72
Identities = 143/303 (47%), Positives = 199/303 (65%), Gaps = 1/303 (0%)
Query: 148 GKAVMTCLYVDDMLIFGTDLNEVEKTKSFLSNSFDMKDLGEADVILGIKIIRDGEIIGLS 207
G+ V+ CLYVDD+LIFGT+L + + KSFLS +FDMKDLG ADVIL IK+IR I L
Sbjct: 979 GEGVILCLYVDDILIFGTNLEVINEVKSFLSQNFDMKDLGVADVILNIKLIRGENGITLL 1038
Query: 208 QSHYIEKVLKKFDHFDCKSVSTPFDQNTKLQPHKRCPVAQLEYSKAIRCLMYAMTCTRPD 267
QSHY+EK+L +F + D K TP+D + L+ +KR QLEYS+ I LMY + TRPD
Sbjct: 1039 QSHYVEKILNRFGYIDSKPSPTPYDPSLLLRKNKRIARNQLEYSQIIGSLMYLASATRPD 1098
Query: 268 IAYVVGRLSRYTCNPSKDHWHVVNRVLKYLNGTINYSLIYNGYPSVLEGYTYASWVTCVK 327
I++ V +LSR+T NP DHW V+ RV++YL GT+ L Y GYP+VLEGY+ ++W++ V
Sbjct: 1099 ISFAVSKLSRFTSNPGDDHWRVLERVMRYLKGTVELGLHYTGYPAVLEGYSDSNWISDVD 1158
Query: 328 DHASTSG*IFNLGGGAVSWGSKKQTCIADSTMAAEFIALAACSKETV*LRNLLYEILIWP 387
+ +TSG +F LGGGAVSW S KQT + STM AE AL + E LR+LL ++ +
Sbjct: 1159 EIKATSGYVFTLGGGAVSWRSCKQTILTRSTMEAELTALDTATVEAEWLRDLLMDLPVVE 1218
Query: 388 KLMRQVSIHCDSQCTLSKAYSQVYNGK-SRHIVLRHSHVKDLITNGVISIVFVRTVKESC 446
K + + ++CD+Q + K S N K SRH+ R V+ L +GVI++ +++T +
Sbjct: 1219 KPVPAILMNCDNQTVIVKVNSSKDNMKSSRHVKRRLKSVRKLRNSGVITLDYIQTARNLA 1278
Query: 447 RSF 449
F
Sbjct: 1279 DPF 1281
>ref|NP_914435.1| putative retrovirous-related pol polyprotein from transposon TNT 1-94
[Oryza sativa (japonica cultivar-group)]
Length = 1302
Score = 275 bits (703), Expect = 2e-72
Identities = 143/303 (47%), Positives = 199/303 (65%), Gaps = 1/303 (0%)
Query: 148 GKAVMTCLYVDDMLIFGTDLNEVEKTKSFLSNSFDMKDLGEADVILGIKIIRDGEIIGLS 207
G+ V+ CLYVDD+LIFGT+L + + KSFLS +FDMKDLG ADVIL IK+IR I L
Sbjct: 979 GEGVILCLYVDDILIFGTNLEVINEVKSFLSQNFDMKDLGVADVILNIKLIRGENGITLL 1038
Query: 208 QSHYIEKVLKKFDHFDCKSVSTPFDQNTKLQPHKRCPVAQLEYSKAIRCLMYAMTCTRPD 267
QSHY+EK+L +F + D K TP+D + L+ +KR QLEYS+ I LMY + TRPD
Sbjct: 1039 QSHYVEKILNRFGYIDSKPSPTPYDPSLLLRKNKRIARNQLEYSQIIGSLMYLASATRPD 1098
Query: 268 IAYVVGRLSRYTCNPSKDHWHVVNRVLKYLNGTINYSLIYNGYPSVLEGYTYASWVTCVK 327
I++ V +LSR+T NP DHW + RV++YL GT+ L Y GYP+VLEGY+ ++W++ V
Sbjct: 1099 ISFAVSKLSRFTSNPGDDHWRALERVMRYLKGTVELGLHYTGYPAVLEGYSDSNWISDVD 1158
Query: 328 DHASTSG*IFNLGGGAVSWGSKKQTCIADSTMAAEFIALAACSKETV*LRNLLYEILIWP 387
+ +TS +F LGGGAVSW S KQT + STM AE AL + E LR+LL ++ +
Sbjct: 1159 EIKATSRYVFTLGGGAVSWRSCKQTILTRSTMEAELTALDTATVEAEWLRDLLMDLPVVE 1218
Query: 388 KLMRQVSIHCDSQCTLSKAYSQVYNGK-SRHIVLRHSHVKDLITNGVISIVFVRTVKESC 446
KL+ + ++CD+Q + K S N K SRH+ R V+ L +GVI++ +++TV+
Sbjct: 1219 KLVPAILMNCDNQTVIVKVNSSKDNMKSSRHVKRRLKSVRKLRNSGVITLDYIQTVRNLA 1278
Query: 447 RSF 449
F
Sbjct: 1279 DPF 1281
>gb|AAR01682.1| putative gag and pol protein [Oryza sativa (japonica cultivar-group)]
gi|50918819|ref|XP_469806.1| putative gag and pol protein
[Oryza sativa (japonica cultivar-group)]
Length = 1302
Score = 275 bits (702), Expect = 3e-72
Identities = 142/303 (46%), Positives = 198/303 (64%), Gaps = 1/303 (0%)
Query: 148 GKAVMTCLYVDDMLIFGTDLNEVEKTKSFLSNSFDMKDLGEADVILGIKIIRDGEIIGLS 207
G+ V+ CLYVDD+LIFGT+L + + KSFLS +FDMKDLG ADVIL IK+IR I L
Sbjct: 979 GEGVILCLYVDDILIFGTNLEVINEVKSFLSQNFDMKDLGVADVILNIKLIRGENGITLL 1038
Query: 208 QSHYIEKVLKKFDHFDCKSVSTPFDQNTKLQPHKRCPVAQLEYSKAIRCLMYAMTCTRPD 267
QSHY+EK+L +F + D K TP+D + L+ +KR QLEYS+ I LMY + TRPD
Sbjct: 1039 QSHYVEKILNRFGYIDSKPSPTPYDPSLSLRKNKRIARNQLEYSQIIGSLMYLASATRPD 1098
Query: 268 IAYVVGRLSRYTCNPSKDHWHVVNRVLKYLNGTINYSLIYNGYPSVLEGYTYASWVTCVK 327
I++ V +LSR+T NP DHW + RV++YL GT+ L Y GYP+VLEGY+ ++W++ V
Sbjct: 1099 ISFAVSKLSRFTSNPGDDHWRALERVMRYLKGTVELGLHYTGYPAVLEGYSDSNWISDVD 1158
Query: 328 DHASTSG*IFNLGGGAVSWGSKKQTCIADSTMAAEFIALAACSKETV*LRNLLYEILIWP 387
+ +TSG +F LGGGAVSW S KQT + STM AE AL + E LR+LL ++ +
Sbjct: 1159 EIKATSGYVFTLGGGAVSWRSCKQTILTRSTMEAELTALDTATVEAEWLRDLLMDLPVVE 1218
Query: 388 KLMRQVSIHCDSQCTLSKAYSQVYNGK-SRHIVLRHSHVKDLITNGVISIVFVRTVKESC 446
K + + ++CD+Q + K S N K SRH+ R V+ L +GVI++ +++T +
Sbjct: 1219 KPVPAILMNCDNQTVIVKVNSSKDNMKSSRHVKRRLKSVRKLRNSGVITLDYIQTARNLA 1278
Query: 447 RSF 449
F
Sbjct: 1279 DPF 1281
>ref|NP_918918.1| putative retrovirus-related pol polyprotein from transposon TNT 1-94
[Oryza sativa (japonica cultivar-group)]
Length = 1302
Score = 274 bits (701), Expect = 4e-72
Identities = 141/303 (46%), Positives = 198/303 (64%), Gaps = 1/303 (0%)
Query: 148 GKAVMTCLYVDDMLIFGTDLNEVEKTKSFLSNSFDMKDLGEADVILGIKIIRDGEIIGLS 207
G+ V+ CLYVDD+LIFGT++ + + KSFLS +FDMKDLG ADVIL IK+IR I L
Sbjct: 979 GEGVILCLYVDDILIFGTNIEVINEVKSFLSQNFDMKDLGVADVILNIKLIRGENGITLL 1038
Query: 208 QSHYIEKVLKKFDHFDCKSVSTPFDQNTKLQPHKRCPVAQLEYSKAIRCLMYAMTCTRPD 267
QSHY+EK+L +F + D K TP+D + L+ +KR QLEYS+ I LMY + TRPD
Sbjct: 1039 QSHYVEKILNRFGYIDSKPSPTPYDSSLSLRKNKRIARNQLEYSQIIGSLMYLASATRPD 1098
Query: 268 IAYVVGRLSRYTCNPSKDHWHVVNRVLKYLNGTINYSLIYNGYPSVLEGYTYASWVTCVK 327
I++ V +LSR+T NP DHW + RV++YL GT+ L Y GYP+VLEGY+ ++W++ V
Sbjct: 1099 ISFAVSKLSRFTSNPGDDHWRALERVMRYLKGTVELGLHYTGYPAVLEGYSDSNWISDVD 1158
Query: 328 DHASTSG*IFNLGGGAVSWGSKKQTCIADSTMAAEFIALAACSKETV*LRNLLYEILIWP 387
+ +TSG +F LGGGAVSW S KQT + STM AE AL + E LR+LL ++ +
Sbjct: 1159 EIKATSGYVFTLGGGAVSWRSCKQTILTRSTMEAELTALDTATVEAEWLRDLLMDLPVVE 1218
Query: 388 KLMRQVSIHCDSQCTLSKAYSQVYNGK-SRHIVLRHSHVKDLITNGVISIVFVRTVKESC 446
K + + ++CD+Q + K S N K SRH+ R V+ L +GVI++ +++T +
Sbjct: 1219 KPVPAILMNCDNQTVIVKVNSSKDNMKSSRHVKRRLKSVRKLRNSGVITLDYIQTARNLA 1278
Query: 447 RSF 449
F
Sbjct: 1279 DPF 1281
>ref|XP_493793.1| unnamed protein product [Oryza sativa (japonica cultivar-group)]
Length = 1302
Score = 274 bits (700), Expect = 5e-72
Identities = 142/303 (46%), Positives = 198/303 (64%), Gaps = 1/303 (0%)
Query: 148 GKAVMTCLYVDDMLIFGTDLNEVEKTKSFLSNSFDMKDLGEADVILGIKIIRDGEIIGLS 207
G+ V+ CLYVDD+LIFGT+L + + KSFLS +FDMKDLG ADVIL IK+IR I L
Sbjct: 979 GEGVILCLYVDDILIFGTNLEVINEVKSFLSQNFDMKDLGVADVILNIKLIRGENGITLL 1038
Query: 208 QSHYIEKVLKKFDHFDCKSVSTPFDQNTKLQPHKRCPVAQLEYSKAIRCLMYAMTCTRPD 267
QSHY+EK+L +F + D K TP+D + L+ +KR QLEYS+ I LMY + TRPD
Sbjct: 1039 QSHYVEKILNRFGYIDSKPSPTPYDPSLLLRKNKRIARNQLEYSQIIGSLMYLASATRPD 1098
Query: 268 IAYVVGRLSRYTCNPSKDHWHVVNRVLKYLNGTINYSLIYNGYPSVLEGYTYASWVTCVK 327
I++ V +LSR+T NP DHW + RV++YL GT+ L Y GYP+VLEGY+ ++W++ V
Sbjct: 1099 ISFAVSKLSRFTSNPGDDHWRALERVMRYLKGTVELGLHYTGYPAVLEGYSDSNWISDVD 1158
Query: 328 DHASTSG*IFNLGGGAVSWGSKKQTCIADSTMAAEFIALAACSKETV*LRNLLYEILIWP 387
+ +TSG +F LGGGAVSW S KQT + STM AE AL + E LR+LL ++ +
Sbjct: 1159 EIKATSGYVFTLGGGAVSWRSCKQTILTRSTMEAELTALDTATVEAEWLRDLLMDLPVVE 1218
Query: 388 KLMRQVSIHCDSQCTLSKAYSQVYNGK-SRHIVLRHSHVKDLITNGVISIVFVRTVKESC 446
K + + ++CD+Q + K S N K SRH+ R V+ L +GVI++ +++T +
Sbjct: 1219 KPVPAILMNCDNQTVIVKVNSSKDNMKSSRHVKRRLKSVRKLRNSGVITLDYIQTARNLA 1278
Query: 447 RSF 449
F
Sbjct: 1279 DPF 1281
>emb|CAD40744.2| OSJNBa0072D21.4 [Oryza sativa (japonica cultivar-group)]
gi|50923761|ref|XP_472241.1| OSJNBa0072D21.4 [Oryza
sativa (japonica cultivar-group)]
Length = 1319
Score = 274 bits (700), Expect = 5e-72
Identities = 142/303 (46%), Positives = 198/303 (64%), Gaps = 1/303 (0%)
Query: 148 GKAVMTCLYVDDMLIFGTDLNEVEKTKSFLSNSFDMKDLGEADVILGIKIIRDGEIIGLS 207
G+ V+ CLYVDD+LIFGT+L + + KSFLS +FDMKDLG ADVIL IK+IR I L
Sbjct: 979 GEGVILCLYVDDILIFGTNLEVINEVKSFLSQNFDMKDLGVADVILNIKLIRGENGITLL 1038
Query: 208 QSHYIEKVLKKFDHFDCKSVSTPFDQNTKLQPHKRCPVAQLEYSKAIRCLMYAMTCTRPD 267
QSHY+EK+L +F + D K TP+D + L+ +KR QLEYS+ I LMY + TRPD
Sbjct: 1039 QSHYVEKILNRFGYIDSKPSPTPYDPSLLLRKNKRIARNQLEYSQIIGSLMYLASATRPD 1098
Query: 268 IAYVVGRLSRYTCNPSKDHWHVVNRVLKYLNGTINYSLIYNGYPSVLEGYTYASWVTCVK 327
I++ V +LSR+T NP DHW + RV++YL GT+ L Y GYP+VLEGY+ ++W++ V
Sbjct: 1099 ISFAVSKLSRFTSNPGDDHWRALERVMRYLKGTVELGLHYTGYPAVLEGYSDSNWISDVD 1158
Query: 328 DHASTSG*IFNLGGGAVSWGSKKQTCIADSTMAAEFIALAACSKETV*LRNLLYEILIWP 387
+ +TSG +F LGGGAVSW S KQT + STM AE AL + E LR+LL ++ +
Sbjct: 1159 EIKATSGYVFTLGGGAVSWRSCKQTILTRSTMEAELTALDTATVEAEWLRDLLMDLPVVE 1218
Query: 388 KLMRQVSIHCDSQCTLSKAYSQVYNGK-SRHIVLRHSHVKDLITNGVISIVFVRTVKESC 446
K + + ++CD+Q + K S N K SRH+ R V+ L +GVI++ +++T +
Sbjct: 1219 KPVPAILMNCDNQTVIVKVNSSKDNMKSSRHVKRRLKSVRKLRNSGVITLDYIQTARNLA 1278
Query: 447 RSF 449
F
Sbjct: 1279 DPF 1281
>gb|AAP20858.1| retrotransposon protein, putative, Ty1-copia sub-class [Oryza sativa
(japonica cultivar-group)] gi|50916721|ref|XP_468757.1|
putative polyprotein [Oryza sativa (japonica
cultivar-group)]
Length = 1302
Score = 274 bits (700), Expect = 5e-72
Identities = 142/303 (46%), Positives = 198/303 (64%), Gaps = 1/303 (0%)
Query: 148 GKAVMTCLYVDDMLIFGTDLNEVEKTKSFLSNSFDMKDLGEADVILGIKIIRDGEIIGLS 207
G+ V+ CLYVDD+LIFGT+L + + KSFLS +FDMKDLG ADVIL IK+IR I L
Sbjct: 979 GEGVILCLYVDDILIFGTNLEVINEVKSFLSQNFDMKDLGVADVILNIKLIRGENGITLL 1038
Query: 208 QSHYIEKVLKKFDHFDCKSVSTPFDQNTKLQPHKRCPVAQLEYSKAIRCLMYAMTCTRPD 267
QSHY+EK+L +F + D K TP+D + L+ +KR QLEYS+ I LMY + TRPD
Sbjct: 1039 QSHYVEKILNRFGYIDSKPSPTPYDPSLLLRKNKRIARNQLEYSQIIGSLMYLASATRPD 1098
Query: 268 IAYVVGRLSRYTCNPSKDHWHVVNRVLKYLNGTINYSLIYNGYPSVLEGYTYASWVTCVK 327
I++ V +LSR+T NP DHW + RV++YL GT+ L Y GYP+VLEGY+ ++W++ V
Sbjct: 1099 ISFAVSKLSRFTSNPGDDHWRALERVMRYLKGTVELGLHYTGYPAVLEGYSDSNWISDVD 1158
Query: 328 DHASTSG*IFNLGGGAVSWGSKKQTCIADSTMAAEFIALAACSKETV*LRNLLYEILIWP 387
+ +TSG +F LGGGAVSW S KQT + STM AE AL + E LR+LL ++ +
Sbjct: 1159 EIKATSGYVFTLGGGAVSWRSCKQTILTRSTMEAELTALDTATVEAEWLRDLLMDLPVVE 1218
Query: 388 KLMRQVSIHCDSQCTLSKAYSQVYNGK-SRHIVLRHSHVKDLITNGVISIVFVRTVKESC 446
K + + ++CD+Q + K S N K SRH+ R V+ L +GVI++ +++T +
Sbjct: 1219 KPVPAILMNCDNQTVIVKVNSSKDNMKSSRHVKRRLKSVRKLRNSGVITLDYIQTARNLA 1278
Query: 447 RSF 449
F
Sbjct: 1279 DPF 1281
>ref|XP_471071.1| OSJNBa0020P07.16 [Oryza sativa (japonica cultivar-group)]
gi|38344873|emb|CAE01299.2| OSJNBa0020P07.16 [Oryza
sativa (japonica cultivar-group)]
Length = 1314
Score = 274 bits (700), Expect = 5e-72
Identities = 142/303 (46%), Positives = 198/303 (64%), Gaps = 1/303 (0%)
Query: 148 GKAVMTCLYVDDMLIFGTDLNEVEKTKSFLSNSFDMKDLGEADVILGIKIIRDGEIIGLS 207
G+ V+ CLYVDD+LIFGT+L + + KSFLS +FDMKDLG ADVIL IK+IR I L
Sbjct: 951 GEGVILCLYVDDILIFGTNLEVINEVKSFLSQNFDMKDLGVADVILNIKLIRGENGITLL 1010
Query: 208 QSHYIEKVLKKFDHFDCKSVSTPFDQNTKLQPHKRCPVAQLEYSKAIRCLMYAMTCTRPD 267
QSHY+EK+L +F + D K TP+D + L+ +KR QLEYS+ I LMY + TRPD
Sbjct: 1011 QSHYVEKILNRFGYIDSKPSPTPYDPSLLLRKNKRIARNQLEYSQIIGSLMYLASATRPD 1070
Query: 268 IAYVVGRLSRYTCNPSKDHWHVVNRVLKYLNGTINYSLIYNGYPSVLEGYTYASWVTCVK 327
I++ V +LSR+T NP DHW + RV++YL GT+ L Y GYP+VLEGY+ ++W++ V
Sbjct: 1071 ISFAVSKLSRFTSNPGDDHWRALERVMRYLKGTVELGLHYTGYPAVLEGYSDSNWISDVD 1130
Query: 328 DHASTSG*IFNLGGGAVSWGSKKQTCIADSTMAAEFIALAACSKETV*LRNLLYEILIWP 387
+ +TSG +F LGGGAVSW S KQT + STM AE AL + E LR+LL ++ +
Sbjct: 1131 EIKATSGYVFTLGGGAVSWRSCKQTILTRSTMEAELTALDTATVEAEWLRDLLMDLPVVE 1190
Query: 388 KLMRQVSIHCDSQCTLSKAYSQVYNGK-SRHIVLRHSHVKDLITNGVISIVFVRTVKESC 446
K + + ++CD+Q + K S N K SRH+ R V+ L +GVI++ +++T +
Sbjct: 1191 KPVPAILMNCDNQTVIVKVNSSKDNMKSSRHVKRRLKSVRKLRNSGVITLDYIQTARNLA 1250
Query: 447 RSF 449
F
Sbjct: 1251 DPF 1253
>ref|XP_463420.1| putative gag and pol [Oryza sativa (japonica cultivar-group)]
Length = 1302
Score = 274 bits (700), Expect = 5e-72
Identities = 142/303 (46%), Positives = 198/303 (64%), Gaps = 1/303 (0%)
Query: 148 GKAVMTCLYVDDMLIFGTDLNEVEKTKSFLSNSFDMKDLGEADVILGIKIIRDGEIIGLS 207
G+ V+ CLYVDD+LIFGT+L + + KSFLS +FDMKDLG ADVIL IK+IR I L
Sbjct: 979 GEGVILCLYVDDILIFGTNLEVINEVKSFLSQNFDMKDLGVADVILNIKLIRGENGITLL 1038
Query: 208 QSHYIEKVLKKFDHFDCKSVSTPFDQNTKLQPHKRCPVAQLEYSKAIRCLMYAMTCTRPD 267
QSHY+EK+L +F + D K TP+D + L+ +KR QLEYS+ I LMY + TRPD
Sbjct: 1039 QSHYVEKILNRFGYIDSKPSPTPYDPSLLLRKNKRIARNQLEYSQIIGSLMYLASATRPD 1098
Query: 268 IAYVVGRLSRYTCNPSKDHWHVVNRVLKYLNGTINYSLIYNGYPSVLEGYTYASWVTCVK 327
I++ V +LSR+T NP DHW + RV++YL GT+ L Y GYP+VLEGY+ ++W++ V
Sbjct: 1099 ISFAVSKLSRFTSNPGDDHWRALERVMRYLKGTVELGLHYTGYPAVLEGYSDSNWISDVD 1158
Query: 328 DHASTSG*IFNLGGGAVSWGSKKQTCIADSTMAAEFIALAACSKETV*LRNLLYEILIWP 387
+ +TSG +F LGGGAVSW S KQT + STM AE AL + E LR+LL ++ +
Sbjct: 1159 EIKATSGYVFTLGGGAVSWRSCKQTILTRSTMEAELTALDTATVEAEWLRDLLMDLPVVE 1218
Query: 388 KLMRQVSIHCDSQCTLSKAYSQVYNGK-SRHIVLRHSHVKDLITNGVISIVFVRTVKESC 446
K + + ++CD+Q + K S N K SRH+ R V+ L +GVI++ +++T +
Sbjct: 1219 KPVPAILMNCDNQTVIVKVNSSKDNMKSSRHVKRRLKSVRKLRNSGVITLDYIQTARNLA 1278
Query: 447 RSF 449
F
Sbjct: 1279 DPF 1281
>ref|NP_918682.1| putative retrovirus-related pol polyprotein from transposon TNT 1-94
[Oryza sativa (japonica cultivar-group)]
Length = 1302
Score = 274 bits (700), Expect = 5e-72
Identities = 142/303 (46%), Positives = 198/303 (64%), Gaps = 1/303 (0%)
Query: 148 GKAVMTCLYVDDMLIFGTDLNEVEKTKSFLSNSFDMKDLGEADVILGIKIIRDGEIIGLS 207
G+ V+ CLYVDD+LIFGT+L + + KSFLS +FDMKDLG ADVIL IK+IR I L
Sbjct: 979 GEGVILCLYVDDILIFGTNLEVINEVKSFLSQNFDMKDLGVADVILNIKLIRGENRITLL 1038
Query: 208 QSHYIEKVLKKFDHFDCKSVSTPFDQNTKLQPHKRCPVAQLEYSKAIRCLMYAMTCTRPD 267
QSHY+EK+L +F + D K TP+D + L+ +KR QLEYS+ I LMY + TRPD
Sbjct: 1039 QSHYVEKILNRFGYIDSKPSPTPYDLSLLLRKNKRIARNQLEYSQIIGSLMYLASATRPD 1098
Query: 268 IAYVVGRLSRYTCNPSKDHWHVVNRVLKYLNGTINYSLIYNGYPSVLEGYTYASWVTCVK 327
I++ V +LSR+T NP DHW + RV++YL GT+ L Y GYP+VLEGY+ ++W++ V
Sbjct: 1099 ISFAVSKLSRFTSNPGDDHWRALERVMRYLKGTVELGLHYTGYPAVLEGYSDSNWISDVD 1158
Query: 328 DHASTSG*IFNLGGGAVSWGSKKQTCIADSTMAAEFIALAACSKETV*LRNLLYEILIWP 387
+ +TSG +F LGGGAVSW S KQT + STM AE AL + E LR+LL ++ I
Sbjct: 1159 EIKATSGYVFTLGGGAVSWRSCKQTILTRSTMEAELTALDTATVEAEWLRDLLMDLPIVE 1218
Query: 388 KLMRQVSIHCDSQCTLSKAYSQVYNGK-SRHIVLRHSHVKDLITNGVISIVFVRTVKESC 446
K + + ++CD+Q + K S N K SRH+ R ++ L +GVI++ +++T +
Sbjct: 1219 KPVPAILMNCDNQTVIVKVNSSKDNMKSSRHVKRRLKSIRKLRNSGVITLDYIQTARNLA 1278
Query: 447 RSF 449
F
Sbjct: 1279 DPF 1281
>gb|AAU44026.2| putative polyprotein [Oryza sativa (japonica cultivar-group)]
Length = 1391
Score = 274 bits (700), Expect = 5e-72
Identities = 142/303 (46%), Positives = 198/303 (64%), Gaps = 1/303 (0%)
Query: 148 GKAVMTCLYVDDMLIFGTDLNEVEKTKSFLSNSFDMKDLGEADVILGIKIIRDGEIIGLS 207
G+ V+ CLYVDD+LIFGT+L + + KSFLS +FDMKDLG ADVIL IK+IR I L
Sbjct: 1068 GEGVILCLYVDDILIFGTNLEVINEVKSFLSQNFDMKDLGVADVILNIKLIRGENGITLL 1127
Query: 208 QSHYIEKVLKKFDHFDCKSVSTPFDQNTKLQPHKRCPVAQLEYSKAIRCLMYAMTCTRPD 267
QSHY+EK+L +F + D K TP+D + L+ +KR QLEYS+ I LMY + TRPD
Sbjct: 1128 QSHYVEKILNRFGYIDSKPSPTPYDPSLLLRKNKRIARNQLEYSQIIGSLMYLASATRPD 1187
Query: 268 IAYVVGRLSRYTCNPSKDHWHVVNRVLKYLNGTINYSLIYNGYPSVLEGYTYASWVTCVK 327
I++ V +LSR+T NP DHW + RV++YL GT+ L Y GYP+VLEGY+ ++W++ V
Sbjct: 1188 ISFAVSKLSRFTSNPGDDHWRALERVMRYLKGTVELGLHYTGYPAVLEGYSDSNWISDVD 1247
Query: 328 DHASTSG*IFNLGGGAVSWGSKKQTCIADSTMAAEFIALAACSKETV*LRNLLYEILIWP 387
+ +TSG +F LGGGAVSW S KQT + STM AE AL + E LR+LL ++ +
Sbjct: 1248 EIKATSGYVFTLGGGAVSWRSCKQTILTRSTMEAELTALDTATVEAEWLRDLLMDLPVVE 1307
Query: 388 KLMRQVSIHCDSQCTLSKAYSQVYNGK-SRHIVLRHSHVKDLITNGVISIVFVRTVKESC 446
K + + ++CD+Q + K S N K SRH+ R V+ L +GVI++ +++T +
Sbjct: 1308 KPVPAILMNCDNQTVIVKVNSSKDNMKSSRHVKRRLKSVRKLRNSGVITLDYIQTARNLA 1367
Query: 447 RSF 449
F
Sbjct: 1368 DPF 1370
>gb|AAX96223.1| retrotransposon protein, putative, Ty1-copia sub-class [Oryza sativa
(japonica cultivar-group)]
Length = 1302
Score = 274 bits (700), Expect = 5e-72
Identities = 142/303 (46%), Positives = 198/303 (64%), Gaps = 1/303 (0%)
Query: 148 GKAVMTCLYVDDMLIFGTDLNEVEKTKSFLSNSFDMKDLGEADVILGIKIIRDGEIIGLS 207
G+ V+ CLYVDD+LIFGT+L + + KSFLS +FDMKDLG ADVIL IK+IR I L
Sbjct: 979 GEGVILCLYVDDILIFGTNLEVINEVKSFLSQNFDMKDLGVADVILNIKLIRGENGITLL 1038
Query: 208 QSHYIEKVLKKFDHFDCKSVSTPFDQNTKLQPHKRCPVAQLEYSKAIRCLMYAMTCTRPD 267
QSHY+EK+L +F + D K TP+D + L+ +KR QLEYS+ I LMY + TRPD
Sbjct: 1039 QSHYVEKILNRFGYIDSKPSPTPYDPSLLLRKNKRIARNQLEYSQIIGSLMYLASATRPD 1098
Query: 268 IAYVVGRLSRYTCNPSKDHWHVVNRVLKYLNGTINYSLIYNGYPSVLEGYTYASWVTCVK 327
I++ V +LSR+T NP DHW + RV++YL GT+ L Y GYP+VLEGY+ ++W++ V
Sbjct: 1099 ISFAVSKLSRFTSNPGDDHWRALERVMRYLKGTVELGLHYTGYPAVLEGYSDSNWISDVD 1158
Query: 328 DHASTSG*IFNLGGGAVSWGSKKQTCIADSTMAAEFIALAACSKETV*LRNLLYEILIWP 387
+ +TSG +F LGGGAVSW S KQT + STM AE AL + E LR+LL ++ +
Sbjct: 1159 EIKATSGYVFTLGGGAVSWRSCKQTILTRSTMEAELTALDTATVEAEWLRDLLMDLPVVE 1218
Query: 388 KLMRQVSIHCDSQCTLSKAYSQVYNGK-SRHIVLRHSHVKDLITNGVISIVFVRTVKESC 446
K + + ++CD+Q + K S N K SRH+ R V+ L +GVI++ +++T +
Sbjct: 1219 KPVPAILMNCDNQTVIVKVNSSKDNMKSSRHVKRRLKSVRKLRNSGVITLDYIQTARNLA 1278
Query: 447 RSF 449
F
Sbjct: 1279 DPF 1281
>ref|XP_475988.1| putative polyprotein [Oryza sativa (japonica cultivar-group)]
gi|48475093|gb|AAT44162.1| putative polyprotein [Oryza
sativa (japonica cultivar-group)]
Length = 1302
Score = 273 bits (699), Expect = 6e-72
Identities = 142/303 (46%), Positives = 198/303 (64%), Gaps = 1/303 (0%)
Query: 148 GKAVMTCLYVDDMLIFGTDLNEVEKTKSFLSNSFDMKDLGEADVILGIKIIRDGEIIGLS 207
G+ V+ CLYVDD+LIFGT+L + + KSFLS +FDMKDLG ADVIL IK+IR I L
Sbjct: 979 GEGVILCLYVDDILIFGTNLEVINEVKSFLSQNFDMKDLGVADVILNIKLIRGENGITLL 1038
Query: 208 QSHYIEKVLKKFDHFDCKSVSTPFDQNTKLQPHKRCPVAQLEYSKAIRCLMYAMTCTRPD 267
QSHY+EK+L +F + D K TP+D + L+ +KR QLEYS+ I LMY + TRPD
Sbjct: 1039 QSHYVEKILNRFGYIDSKPSPTPYDPSLLLRKNKRIARNQLEYSQIIGSLMYLASATRPD 1098
Query: 268 IAYVVGRLSRYTCNPSKDHWHVVNRVLKYLNGTINYSLIYNGYPSVLEGYTYASWVTCVK 327
I++ V +LSR+T NP DHW + RV++YL GT+ L Y YP+VLEGY+ ++W++ V
Sbjct: 1099 ISFAVSKLSRFTSNPGDDHWRALERVMRYLKGTVELGLHYTRYPAVLEGYSDSNWISDVD 1158
Query: 328 DHASTSG*IFNLGGGAVSWGSKKQTCIADSTMAAEFIALAACSKETV*LRNLLYEILIWP 387
+ +TSG +F LGGGAVSW S KQT + STM AE AL + E LR+LL ++ +
Sbjct: 1159 EIKATSGYVFTLGGGAVSWRSCKQTILTRSTMEAELTALDTATVEAEWLRDLLMDLPVVE 1218
Query: 388 KLMRQVSIHCDSQCTLSKAYSQVYNGK-SRHIVLRHSHVKDLITNGVISIVFVRTVKESC 446
KL+ + ++CD+Q + K S N K SRH+ R V+ L +GVI++ +++T +
Sbjct: 1219 KLVPAILMNCDNQTVIVKVNSSKDNMKSSRHVKRRLKSVRKLRNSGVITLDYIQTARNLA 1278
Query: 447 RSF 449
F
Sbjct: 1279 DPF 1281
>emb|CAE02325.2| OSJNBb0112E13.7 [Oryza sativa (japonica cultivar-group)]
gi|50923051|ref|XP_471886.1| OSJNBb0112E13.7 [Oryza
sativa (japonica cultivar-group)]
Length = 1342
Score = 273 bits (698), Expect = 8e-72
Identities = 141/303 (46%), Positives = 197/303 (64%), Gaps = 1/303 (0%)
Query: 148 GKAVMTCLYVDDMLIFGTDLNEVEKTKSFLSNSFDMKDLGEADVILGIKIIRDGEIIGLS 207
GK V+ CLYVDD+LIFGT+L + + KSFLS +FDMKDLG ADVIL IK+IR I L
Sbjct: 979 GKGVILCLYVDDILIFGTNLEVINEVKSFLSQNFDMKDLGVADVILNIKLIRGENGITLL 1038
Query: 208 QSHYIEKVLKKFDHFDCKSVSTPFDQNTKLQPHKRCPVAQLEYSKAIRCLMYAMTCTRPD 267
QSHY+EK+L +F + D K TP+D + L+ + R QLEYS+ I LMY + TRPD
Sbjct: 1039 QSHYVEKILNRFGYIDSKPSPTPYDPSLLLRKNNRIARNQLEYSQIIGSLMYLASATRPD 1098
Query: 268 IAYVVGRLSRYTCNPSKDHWHVVNRVLKYLNGTINYSLIYNGYPSVLEGYTYASWVTCVK 327
I++ V +LSR+T NP DHW + R+++YL GT+ L Y GYP+VLEGY+ ++W++ V
Sbjct: 1099 ISFAVSKLSRFTSNPGDDHWRALERIMRYLKGTVELGLHYTGYPAVLEGYSDSNWISDVD 1158
Query: 328 DHASTSG*IFNLGGGAVSWGSKKQTCIADSTMAAEFIALAACSKETV*LRNLLYEILIWP 387
+ +TSG +F LGGGAVSW S KQT + STM AE AL + E LR+LL ++ +
Sbjct: 1159 EIKATSGYVFTLGGGAVSWRSCKQTILTRSTMEAELTALDTATVEAEWLRDLLMDLPVVE 1218
Query: 388 KLMRQVSIHCDSQCTLSKAYSQVYNGK-SRHIVLRHSHVKDLITNGVISIVFVRTVKESC 446
K + + ++CD+Q + K S N K SRH+ R V+ L +GVI++ +++T +
Sbjct: 1219 KPVPAILMNCDNQTVIVKVNSSKDNMKSSRHVKRRLKSVRKLRNSGVITLDYIQTARNLA 1278
Query: 447 RSF 449
F
Sbjct: 1279 DPF 1281
>gb|AAR01716.1| putative Gag and Pol polyprotein [Oryza sativa (japonica
cultivar-group)] gi|50900582|ref|XP_462724.1| putative
Gag and Pol polyprotein [Oryza sativa (japonica
cultivar-group)] gi|34913798|ref|NP_918246.1| putative
polyprotein from transposon TNT 1-94 [Oryza sativa
(japonica cultivar-group)]
Length = 1302
Score = 273 bits (697), Expect = 1e-71
Identities = 140/303 (46%), Positives = 198/303 (65%), Gaps = 1/303 (0%)
Query: 148 GKAVMTCLYVDDMLIFGTDLNEVEKTKSFLSNSFDMKDLGEADVILGIKIIRDGEIIGLS 207
G+ V+ CLYVDD+LIFGT++ + + KSFLS +FDMKDLG ADVIL IK+IR I L
Sbjct: 979 GEGVILCLYVDDILIFGTNIEVINEVKSFLSQNFDMKDLGVADVILNIKLIRGENGITLL 1038
Query: 208 QSHYIEKVLKKFDHFDCKSVSTPFDQNTKLQPHKRCPVAQLEYSKAIRCLMYAMTCTRPD 267
QSHY+EK+L +F + D K TP+D + L+ +KR QLEYS+ I LMY + TRPD
Sbjct: 1039 QSHYVEKILNRFGYIDSKPSPTPYDPSLSLRKNKRIARNQLEYSQIIGSLMYLASATRPD 1098
Query: 268 IAYVVGRLSRYTCNPSKDHWHVVNRVLKYLNGTINYSLIYNGYPSVLEGYTYASWVTCVK 327
I++ V +LSR+T NP DHW + RV++YL GT+ L Y GYP+VLEGY+ ++W++ V
Sbjct: 1099 ISFAVSKLSRFTSNPGDDHWRALERVMRYLKGTVELGLHYTGYPAVLEGYSDSNWISDVD 1158
Query: 328 DHASTSG*IFNLGGGAVSWGSKKQTCIADSTMAAEFIALAACSKETV*LRNLLYEILIWP 387
+ +TSG +F LGGGAVSW S KQT + STM AE AL + E LR+LL ++ +
Sbjct: 1159 EIKATSGYVFTLGGGAVSWRSCKQTILTRSTMEAELTALDTATVEAEWLRDLLMDLPVVE 1218
Query: 388 KLMRQVSIHCDSQCTLSKAYSQVYNGK-SRHIVLRHSHVKDLITNGVISIVFVRTVKESC 446
K + + ++CD+Q + K + N K SRH+ R V+ L +GVI++ +++T +
Sbjct: 1219 KPVPAILMNCDNQTVIVKVNNSKDNMKSSRHVKRRLKSVRKLRNSGVITLDYIQTARNLA 1278
Query: 447 RSF 449
F
Sbjct: 1279 DPF 1281
>ref|XP_468569.1| Putative polyprotein from transposon TNT [Oryza sativa (japonica
cultivar-group)] gi|24431600|gb|AAN61480.1| Putative
polyprotein from transposon TNT [Oryza sativa (japonica
cultivar-group)]
Length = 1911
Score = 273 bits (697), Expect = 1e-71
Identities = 140/303 (46%), Positives = 198/303 (65%), Gaps = 1/303 (0%)
Query: 148 GKAVMTCLYVDDMLIFGTDLNEVEKTKSFLSNSFDMKDLGEADVILGIKIIRDGEIIGLS 207
G+ V+ CLYVDD+LIFGT++ + + KSFLS +FDMKDLG ADVIL IK+IR I L
Sbjct: 979 GEGVILCLYVDDILIFGTNIEVINEVKSFLSQNFDMKDLGVADVILNIKLIRGENGITLL 1038
Query: 208 QSHYIEKVLKKFDHFDCKSVSTPFDQNTKLQPHKRCPVAQLEYSKAIRCLMYAMTCTRPD 267
QSHY+EK+L +F + D K TP+D + L+ +KR QLEYS+ I LMY + TRPD
Sbjct: 1039 QSHYVEKILNRFGYIDSKPSPTPYDPSLSLRKNKRIARNQLEYSQIIGSLMYLASATRPD 1098
Query: 268 IAYVVGRLSRYTCNPSKDHWHVVNRVLKYLNGTINYSLIYNGYPSVLEGYTYASWVTCVK 327
I++ V +LSR+T NP DHW + RV++YL GT+ L Y GYP+VLEGY+ ++W++ V
Sbjct: 1099 ISFAVSKLSRFTSNPGDDHWRALERVMRYLKGTVELGLHYTGYPAVLEGYSDSNWISDVD 1158
Query: 328 DHASTSG*IFNLGGGAVSWGSKKQTCIADSTMAAEFIALAACSKETV*LRNLLYEILIWP 387
+ +TSG +F LGGGAVSW S KQT + STM AE AL + E LR+LL ++ +
Sbjct: 1159 EIKATSGYVFTLGGGAVSWRSCKQTILTRSTMEAELTALDTATVEAEWLRDLLMDLPVVE 1218
Query: 388 KLMRQVSIHCDSQCTLSKAYSQVYNGK-SRHIVLRHSHVKDLITNGVISIVFVRTVKESC 446
K + + ++CD+Q + K + N K SRH+ R V+ L +GVI++ +++T +
Sbjct: 1219 KPVPAILMNCDNQTVIVKVNNSKDNMKSSRHVKRRLKSVRKLRNSGVITLDYIQTARNLA 1278
Query: 447 RSF 449
F
Sbjct: 1279 DPF 1281
>ref|NP_918597.1| putative retrovirus-related pol polyprotein [Oryza sativa (japonica
cultivar-group)]
Length = 1302
Score = 273 bits (697), Expect = 1e-71
Identities = 140/303 (46%), Positives = 198/303 (65%), Gaps = 1/303 (0%)
Query: 148 GKAVMTCLYVDDMLIFGTDLNEVEKTKSFLSNSFDMKDLGEADVILGIKIIRDGEIIGLS 207
G+ V+ CLYVDD+LIFGT++ + + KSFLS +FDMKDLG ADVIL IK+IR I L
Sbjct: 979 GEGVILCLYVDDILIFGTNIEVINEVKSFLSQNFDMKDLGVADVILNIKLIRGENGITLL 1038
Query: 208 QSHYIEKVLKKFDHFDCKSVSTPFDQNTKLQPHKRCPVAQLEYSKAIRCLMYAMTCTRPD 267
QSHY+EK+L +F + D K TP+D + L+ +KR QLEYS+ I LMY + TRPD
Sbjct: 1039 QSHYVEKILNRFGYIDSKPSPTPYDPSLSLRKNKRIARNQLEYSQIIGSLMYLASATRPD 1098
Query: 268 IAYVVGRLSRYTCNPSKDHWHVVNRVLKYLNGTINYSLIYNGYPSVLEGYTYASWVTCVK 327
I++ V +LSR+T NP DHW + RV++YL GT+ L Y GYP+VLEGY+ ++W++ V
Sbjct: 1099 ISFAVSKLSRFTSNPGDDHWRALERVMRYLKGTVELGLHYTGYPAVLEGYSDSNWISDVD 1158
Query: 328 DHASTSG*IFNLGGGAVSWGSKKQTCIADSTMAAEFIALAACSKETV*LRNLLYEILIWP 387
+ +TSG +F LGGGAVSW S KQT + STM AE AL + E LR+LL ++ +
Sbjct: 1159 EIKATSGYVFTLGGGAVSWRSCKQTILTRSTMEAELTALDTATVEAEWLRDLLMDLPVVE 1218
Query: 388 KLMRQVSIHCDSQCTLSKAYSQVYNGK-SRHIVLRHSHVKDLITNGVISIVFVRTVKESC 446
K + + ++CD+Q + K + N K SRH+ R V+ L +GVI++ +++T +
Sbjct: 1219 KPVPAILMNCDNQTVIVKVNNSKDNMKSSRHVKRRLKSVRKLRNSGVITLDYIQTARNLA 1278
Query: 447 RSF 449
F
Sbjct: 1279 DPF 1281
Database: nr
Posted date: Jul 5, 2005 12:34 AM
Number of letters in database: 863,360,394
Number of sequences in database: 2,540,612
Lambda K H
0.351 0.154 0.546
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 697,925,649
Number of Sequences: 2540612
Number of extensions: 26344195
Number of successful extensions: 121097
Number of sequences better than 10.0: 857
Number of HSP's better than 10.0 without gapping: 792
Number of HSP's successfully gapped in prelim test: 65
Number of HSP's that attempted gapping in prelim test: 118662
Number of HSP's gapped (non-prelim): 1087
length of query: 469
length of database: 863,360,394
effective HSP length: 132
effective length of query: 337
effective length of database: 527,999,610
effective search space: 177935868570
effective search space used: 177935868570
T: 11
A: 40
X1: 14 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 38 (21.9 bits)
S2: 77 (34.3 bits)
Lotus: description of TM0185.17