BLAST2 result
BLASTP 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TM0181.4
(987 letters)
Database: nr
2,540,612 sequences; 863,360,394 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAP54660.1| putative plant disease resistance polyprotein [Or... 42 0.077
gb|AAV24812.1| putative polyprotein [Oryza sativa (japonica cult... 42 0.10
ref|NP_910012.1| putative polyprotein [Oryza sativa] gi|18855070... 41 0.17
ref|NP_908831.1| putative polyprotein [Oryza sativa (japonica cu... 41 0.22
gb|AAM65208.1| unknown [Arabidopsis thaliana] 41 0.22
gb|AAO37507.1| retrotransposon protein, putative, unclassified [... 40 0.29
gb|AAF06089.1| F28J9.14 [Arabidopsis thaliana] gi|25403488|pir||... 40 0.38
ref|XP_474255.1| OSJNBa0087O24.13 [Oryza sativa (japonica cultiv... 40 0.50
gb|AAK16154.1| gag protein [Zea mays] 40 0.50
gb|AAF13073.1| putative retroelement pol polyprotein [Arabidopsi... 39 0.65
emb|CAA75591.1| MtN12 [Medicago truncatula] 39 0.65
emb|CAC01880.1| putative protein [Arabidopsis thaliana] gi|11358... 39 0.85
emb|CAB79939.1| putative protein [Arabidopsis thaliana] gi|28646... 39 0.85
gb|AAP52937.1| putative retroelement [Oryza sativa (japonica cul... 39 0.85
ref|XP_470220.1| Putative mutator-like transposase [Oryza sativa... 39 0.85
gb|AAN04954.1| Putative retroelement [Oryza sativa (japonica cul... 39 0.85
gb|EAL20022.1| hypothetical protein CNBF3480 [Cryptococcus neofo... 39 0.85
emb|CAC05636.1| putative protein [Arabidopsis thaliana] 39 1.1
gb|AAP53721.1| contains similarity to gag-pol polyprotein [Oryza... 39 1.1
gb|AAP52460.1| putative polyprotein [Oryza sativa (japonica cult... 39 1.1
>gb|AAP54660.1| putative plant disease resistance polyprotein [Oryza sativa
(japonica cultivar-group)] gi|37536142|ref|NP_922373.1|
putative plant disease resistance polyprotein [Oryza
sativa (japonica cultivar-group)]
gi|10122034|gb|AAG13423.1| putative plant disease
resistance polyprotein [Oryza sativa (japonica
cultivar-group)]
Length = 894
Score = 42.4 bits (98), Expect = 0.077
Identities = 18/73 (24%), Positives = 37/73 (50%), Gaps = 2/73 (2%)
Query: 89 PPLKLIKFSGSDPTFWLLNTEVFFLQHPWPLELRFQFIALYLEGQALTWFNLWR--HQLD 146
P + +F GSD WL E +F + + + L++ G A W++ ++ ++++
Sbjct: 120 PKMDFPRFDGSDVRIWLNMCETYFDMYQITQNFKVSAVVLHMSGNAAQWYHSYKLVNEVN 179
Query: 147 SWEKFREVFKLQF 159
SW++FR +F
Sbjct: 180 SWDQFRMAVATEF 192
>gb|AAV24812.1| putative polyprotein [Oryza sativa (japonica cultivar-group)]
Length = 1475
Score = 42.0 bits (97), Expect = 0.10
Identities = 22/60 (36%), Positives = 29/60 (47%)
Query: 79 SQTQHSALSSPPLKLIKFSGSDPTFWLLNTEVFFLQHPWPLELRFQFIALYLEGQALTWF 138
+Q + L P L++ FSG DP WL E FF PL+ +L G+AL WF
Sbjct: 86 NQYAEAVLKGPRLEIPLFSGEDPIDWLKQCEKFFEITGTPLDQWVNLAVAHLNGRALKWF 145
>ref|NP_910012.1| putative polyprotein [Oryza sativa] gi|18855070|gb|AAL79762.1|
putative polyprotein [Oryza sativa]
Length = 1087
Score = 41.2 bits (95), Expect = 0.17
Identities = 20/57 (35%), Positives = 27/57 (47%)
Query: 88 SPPLKLIKFSGSDPTFWLLNTEVFFLQHPWPLELRFQFIALYLEGQALTWFNLWRHQ 144
SP + KFSGSD WL N E FFL + + L + G A W+ W+ +
Sbjct: 142 SPKMDFPKFSGSDVRVWLDNCETFFLFYQIADGYKVSAAVLNMSGDAANWYQEWKFE 198
>ref|NP_908831.1| putative polyprotein [Oryza sativa (japonica cultivar-group)]
Length = 1522
Score = 40.8 bits (94), Expect = 0.22
Identities = 33/132 (25%), Positives = 55/132 (41%), Gaps = 15/132 (11%)
Query: 58 SIPPQPPP-----IYHHNPAPYHNYPSQTQHSALSSPPLKLIKFSGSDPTFWLLNTEVFF 112
S QPPP + P N Q + S + P + KF G+D W+ N E +F
Sbjct: 95 STSTQPPPEVEVPVRSGQPPVRDNSDVQGRRSWV--PKMDFPKFDGTDVCVWVDNCETYF 152
Query: 113 LQHPWPLELRFQFIALYLEGQALTWFNLWRHQ--LDSWEKFREV----FKLQFIQFRSEH 166
+ + +L + G A W+ W+ + +WE+ RE F++ + + E
Sbjct: 153 ALYQITEGFKVSAASLNMIGDAAHWYQAWKQERGWPTWEQLREAVLNEFEINIKRAKMEE 212
Query: 167 --IAASSGTVLE 176
+ +GTV E
Sbjct: 213 LLLLTQTGTVSE 224
>gb|AAM65208.1| unknown [Arabidopsis thaliana]
Length = 272
Score = 40.8 bits (94), Expect = 0.22
Identities = 27/100 (27%), Positives = 46/100 (46%), Gaps = 6/100 (6%)
Query: 59 IPPQPPPIYHHNPAPYHN----YPSQ-TQHSALSSPPLKLIKFSGSDPTFWLLNTEVFFL 113
+P PPP + A N +P + +++ L P +++ F G + WL E +F
Sbjct: 77 LPVAPPPPTKQSTAAEDNSIDTHPHRMSRYIQLMKPKIEMPVFEGPNVNSWLTRAERYFE 136
Query: 114 QHPWPLELRFQFIALYLEGQALTWFNLW-RHQLDSWEKFR 152
+ + Q + + +EG AL WFNL R+ W F+
Sbjct: 137 FGSFTNAEKIQLVYMSVEGPALCWFNLENRNPFVDWNDFK 176
>gb|AAO37507.1| retrotransposon protein, putative, unclassified [Oryza sativa
(japonica cultivar-group)] gi|50916505|ref|XP_468649.1|
putative polyprotein [Oryza sativa (japonica
cultivar-group)]
Length = 1155
Score = 40.4 bits (93), Expect = 0.29
Identities = 18/73 (24%), Positives = 36/73 (48%), Gaps = 2/73 (2%)
Query: 89 PPLKLIKFSGSDPTFWLLNTEVFFLQHPWPLELRFQFIALYLEGQALTWFNLWR--HQLD 146
P + +F GSD WL E +F + + L++ G A W++ ++ ++++
Sbjct: 120 PKMDFPRFDGSDVRIWLDMCETYFDMYQITQNFKVSAAVLHMSGNAAQWYHSYKLVNEVN 179
Query: 147 SWEKFREVFKLQF 159
SW++FR +F
Sbjct: 180 SWDQFRMAVATEF 192
>gb|AAF06089.1| F28J9.14 [Arabidopsis thaliana] gi|25403488|pir||C86485 protein
F28J9.14 [imported] - Arabidopsis thaliana
Length = 525
Score = 40.0 bits (92), Expect = 0.38
Identities = 25/104 (24%), Positives = 44/104 (42%), Gaps = 8/104 (7%)
Query: 73 PYHNYP--SQTQHSALSSPPLKLIKFSGSDPTFWLLNTEVFFLQHPWPLELRFQFIALYL 130
P HN S T A L +F+G WLL E FF + P E + ++++
Sbjct: 119 PSHNIDVISNTYADATQPEKLDFPRFNGDKIQEWLLLVEQFFEIYQTPDEFKVCLVSIHF 178
Query: 131 EGQALTWFN------LWRHQLDSWEKFREVFKLQFIQFRSEHIA 168
+G A W +W H W ++ + ++++ + + IA
Sbjct: 179 DGLANAWHQSISHSVMWEHVRHDWWSYKLLLQVRYNEHVDDSIA 222
>ref|XP_474255.1| OSJNBa0087O24.13 [Oryza sativa (japonica cultivar-group)]
gi|32488663|emb|CAE03590.1| OSJNBa0087O24.13 [Oryza
sativa (japonica cultivar-group)]
Length = 1311
Score = 39.7 bits (91), Expect = 0.50
Identities = 23/88 (26%), Positives = 37/88 (41%), Gaps = 3/88 (3%)
Query: 53 NGHLRSIPPQPPPIYHHNPAPYHNYPSQTQHS---ALSSPPLKLIKFSGSDPTFWLLNTE 109
N + P PP + +NP P+H + HS A S + F G P W+ E
Sbjct: 249 NPYYHQEPFHPPHHHQYNPEPHHTNYAHRPHSADPAKRSRNVDFPTFEGDYPESWIRKAE 308
Query: 110 VFFLQHPWPLELRFQFIALYLEGQALTW 137
+F + P E + +++ G+A W
Sbjct: 309 KYFSLYQTPEEDKVLLAEVHISGRADQW 336
>gb|AAK16154.1| gag protein [Zea mays]
Length = 286
Score = 39.7 bits (91), Expect = 0.50
Identities = 40/142 (28%), Positives = 63/142 (44%), Gaps = 23/142 (16%)
Query: 61 PQPPPIYHHNPAPYHNYPSQ-----TQHSALSSPPLKLI------------KFSGS-DPT 102
P+ P H+ AP H P Q + S L+ P L++ K++GS DP
Sbjct: 104 PENPRFPQHDYAPQHGAPFQGINYLDERSPLA-PHLQVTPWPANFRAGAYPKYNGSTDPA 162
Query: 103 FWLLNTEVFFLQHPWPLELRFQFIALYLEGQALTWFN-LWRHQLDSWEKFREVFKLQFIQ 161
++++ +V + + LEG ALTWF L +DSW R+ F L F
Sbjct: 163 QYIMSYQVAVASAGGDEATMAKSFIIALEGPALTWFTRLPPLSIDSWRSLRDKFLLNFQG 222
Query: 162 FRSEHIAASSGTV---LEKTTV 180
+R + A + ++ LEK T+
Sbjct: 223 YRPDTDALAELSLCKQLEKETL 244
>gb|AAF13073.1| putative retroelement pol polyprotein [Arabidopsis thaliana]
Length = 1661
Score = 39.3 bits (90), Expect = 0.65
Identities = 25/100 (25%), Positives = 42/100 (42%), Gaps = 2/100 (2%)
Query: 62 QPPPIYHHNPAPYHNYPSQTQHSALSSPPLKLIKFSGSDPTFWLLNTEVFFLQHPWPLEL 121
Q P + P + P Q + A + + G + WL E FL + E
Sbjct: 202 QTTPTFQTQTFPPQSAPHQPRFEAAPRRTVDYPAYEGGNADDWLFRLEQCFLSNRTLEEE 261
Query: 122 RFQFIALYLEGQALTWFNLW--RHQLDSWEKFREVFKLQF 159
+ + L G ++TW+ R Q+ +W +F+E F L+F
Sbjct: 262 KLEKAVSCLTGASVTWWRCSKDREQIYTWREFQEKFMLRF 301
>emb|CAA75591.1| MtN12 [Medicago truncatula]
Length = 113
Score = 39.3 bits (90), Expect = 0.65
Identities = 14/30 (46%), Positives = 15/30 (49%)
Query: 61 PQPPPIYHHNPAPYHNYPSQTQHSALSSPP 90
P P P+YH P P H YP H SPP
Sbjct: 62 PHPKPVYHSPPPPVHTYPPHVPHPVYHSPP 91
>emb|CAC01880.1| putative protein [Arabidopsis thaliana] gi|11358456|pir||T51426
hypothetical protein T9L3_110 - Arabidopsis thaliana
Length = 716
Score = 38.9 bits (89), Expect = 0.85
Identities = 22/84 (26%), Positives = 41/84 (48%), Gaps = 6/84 (7%)
Query: 91 LKLIKFSGSDPTFWLLNTEVFFLQHPWPLELRFQFIALYLEGQALTWFN------LWRHQ 144
L+ ++F+G T WL E FFL P EL+ F +L+ + A T W+H
Sbjct: 106 LEHLRFNGDRITEWLFQIEQFFLIDRTPEELKVGFASLHFDDTAATLHQSIVQSMWWKHV 165
Query: 145 LDSWEKFREVFKLQFIQFRSEHIA 168
W ++ + ++++ + ++ IA
Sbjct: 166 RHDWWSYKLLLQVRYDEHVNDSIA 189
>emb|CAB79939.1| putative protein [Arabidopsis thaliana] gi|2864622|emb|CAA16969.1|
putative protein [Arabidopsis thaliana]
gi|7485352|pir||T05407 hypothetical protein F10M6.150 -
Arabidopsis thaliana
Length = 1086
Score = 38.9 bits (89), Expect = 0.85
Identities = 22/84 (26%), Positives = 41/84 (48%), Gaps = 6/84 (7%)
Query: 91 LKLIKFSGSDPTFWLLNTEVFFLQHPWPLELRFQFIALYLEGQALTWFN------LWRHQ 144
L+ ++F+G T WL E FFL P EL+ F +L+ + A T W+H
Sbjct: 106 LEHLRFNGDRITEWLFQIEQFFLIDRTPEELKVGFASLHFDDTAATLHQSIVQSMWWKHV 165
Query: 145 LDSWEKFREVFKLQFIQFRSEHIA 168
W ++ + ++++ + ++ IA
Sbjct: 166 RHDWWSYKLLLQVRYDEHVNDSIA 189
>gb|AAP52937.1| putative retroelement [Oryza sativa (japonica cultivar-group)]
gi|37532696|ref|NP_920650.1| putative retroelement
[Oryza sativa (japonica cultivar-group)]
gi|19881710|gb|AAM01111.1| putative retroelement [Oryza
sativa]
Length = 1043
Score = 38.9 bits (89), Expect = 0.85
Identities = 19/62 (30%), Positives = 27/62 (42%), Gaps = 2/62 (3%)
Query: 89 PPLKLIKFSGSDPTFWLLNTEVFFLQHPWPLELRFQFIALYLEGQALTWFNLWR--HQLD 146
P +FSG +P W N E +F + E QF L+ G A W + H ++
Sbjct: 110 PKTDFPRFSGENPKLWKKNAEKYFGMYNVAYETWAQFATLHFTGNAALWLQTYEELHSVE 169
Query: 147 SW 148
SW
Sbjct: 170 SW 171
>ref|XP_470220.1| Putative mutator-like transposase [Oryza sativa]
gi|15451606|gb|AAK98730.1| Putative mutator-like
transposase [Oryza sativa]
Length = 2421
Score = 38.9 bits (89), Expect = 0.85
Identities = 32/145 (22%), Positives = 53/145 (36%), Gaps = 11/145 (7%)
Query: 34 DFDTRISAISGLIDQVSFLNGHLRSIPP---------QPPPIYHHNPAPYHNYPSQTQHS 84
D ++ A + + L H +S PP P Y H+PA + +
Sbjct: 1976 DLTAQLGARNAAEIRAEVLGSHPQSPPPANGTNSILFSTPAPYFHDPAMRTAFTGSAVGT 2035
Query: 85 ALSSPPLKLIKFSGSDPTFWLLNTEVFFLQHPWPLELRFQFIALYLEGQALTWFNLWRHQ 144
+ PP+ +F G +P W N E +F + + L G A W R Q
Sbjct: 2036 STGLPPMPCPQFDGDNPQMWRENCEAYFDTYGVSPAHWVRIATLNFSGNASFWLQSVRSQ 2095
Query: 145 L--DSWEKFREVFKLQFIQFRSEHI 167
L +W + E +F + R + +
Sbjct: 2096 LIGVTWVELCEKVCAKFSRDRHQQL 2120
>gb|AAN04954.1| Putative retroelement [Oryza sativa (japonica cultivar-group)]
Length = 813
Score = 38.9 bits (89), Expect = 0.85
Identities = 19/62 (30%), Positives = 27/62 (42%), Gaps = 2/62 (3%)
Query: 89 PPLKLIKFSGSDPTFWLLNTEVFFLQHPWPLELRFQFIALYLEGQALTWFNLWR--HQLD 146
P +FSG +P W N E +F + E QF L+ G A W + H ++
Sbjct: 110 PKTDFPRFSGENPKLWKKNAEKYFGMYNVAYETWAQFATLHFTGNAALWLQTYEELHSVE 169
Query: 147 SW 148
SW
Sbjct: 170 SW 171
>gb|EAL20022.1| hypothetical protein CNBF3480 [Cryptococcus neoformans var.
neoformans B-3501A]
Length = 419
Score = 38.9 bits (89), Expect = 0.85
Identities = 37/151 (24%), Positives = 57/151 (37%), Gaps = 19/151 (12%)
Query: 60 PPQPPPIYHHNPAPYHNYPSQTQHSALSSPPLKLIKFSGS-DPTFWLLNTEVFFLQHPWP 118
PP+P P + PAP A + PP + F+G +N +Q+ +
Sbjct: 76 PPRPSPSHQPVPAP---------EPATNLPPALPVTFTGERTRALAFINLLEHSVQYHYD 126
Query: 119 L-----ELRFQFIALYLEGQALTWFNLWR----HQLDSWEKFREVFKLQFIQFRSEHIAA 169
L + + +L G A TWF R L SW+ FR F +I +
Sbjct: 127 AFFANPSLAVSWASAHLSGPAATWFQKLRATSPEALSSWKAFRSAFADAYIPPSGRLLLL 186
Query: 170 SSGTVLEKTTVVVPPRKGGTVYHDELETTED 200
L +TT V + + +L+ TED
Sbjct: 187 EQLLELRQTTTVQEYNRSFSRLMGQLDMTED 217
>emb|CAC05636.1| putative protein [Arabidopsis thaliana]
Length = 221
Score = 38.5 bits (88), Expect = 1.1
Identities = 26/109 (23%), Positives = 48/109 (43%), Gaps = 15/109 (13%)
Query: 95 KFSGSDPTFWLLNTEVFFLQHPWPLELRFQFIALYLEGQALTWFN------LWRHQLDSW 148
+F+G WL E FFL P EL+ +++ + TW +WRH W
Sbjct: 73 RFNGDGIKDWLFQIEQFFLIDHTPEELKVDIASIHFDDIDATWHQSIVQSIMWRHVRHDW 132
Query: 149 EKFREVFKLQFIQFRSEHIAASSGTVLEKTTVVVPPRKGGTVYHDELET 197
++ + ++++ + + IA +L++T +G VYH E+
Sbjct: 133 WNYKLLLQVRYNKHVDDSIAKLK--LLQET-------EGIEVYHARFES 172
>gb|AAP53721.1| contains similarity to gag-pol polyprotein [Oryza sativa (japonica
cultivar-group)] gi|37534264|ref|NP_921434.1| contains
similarity to gag-pol polyprotein [Oryza sativa
(japonica cultivar-group)]
Length = 1260
Score = 38.5 bits (88), Expect = 1.1
Identities = 40/155 (25%), Positives = 67/155 (42%), Gaps = 27/155 (17%)
Query: 14 PTVLDAIDAKL-ASMATKLQVDFDTRISAISGLIDQVSFLNGHLRSIP------PQPPPI 66
PT L + A++ + T+ + D + ++GL D + + G + +P +P P+
Sbjct: 106 PTALTPVQAQVNPNPETQTEADMEAMQQNMTGLQDMLRQMAGGEKGLPLSGGIKNRPIPL 165
Query: 67 YHHNPAPYHNYPSQTQHSALSSPPLKLIKFSGSDPTFWLLNTEVFFLQHPWPLELRFQFI 126
P P Y S+T S I+ + D NT+ + I
Sbjct: 166 QFKFP-PVPRYSSETDPKEFLSIYESAIEAAHGDE-----NTKA-------------KVI 206
Query: 127 ALYLEGQALTW-FNLWRHQLDSWEKFREVFKLQFI 160
L L+G A +W FNL + + SWE+ R+VF L F+
Sbjct: 207 HLALDGIARSWYFNLPANSIYSWEQLRDVFVLNFL 241
>gb|AAP52460.1| putative polyprotein [Oryza sativa (japonica cultivar-group)]
gi|37531742|ref|NP_920173.1| putative polyprotein [Oryza
sativa (japonica cultivar-group)]
gi|21321751|gb|AAM47286.1| Putative polyprotein [Oryza
sativa (japonica cultivar-group)]
gi|14589380|gb|AAK70635.1| Putative polyprotein [Oryza
sativa]
Length = 869
Score = 38.5 bits (88), Expect = 1.1
Identities = 17/58 (29%), Positives = 27/58 (46%), Gaps = 2/58 (3%)
Query: 95 KFSGSDPTFWLLNTEVFFLQHPWPLELRFQFIALYLEGQALTWFNLWR--HQLDSWEK 150
KF G +P W N+E +F + P E F L+ G A W + H +++W +
Sbjct: 97 KFDGDNPKLWKTNSEKYFSMYQVPYETWSSFATLHFIGNAALWLQTYEELHCVENWSE 154
Database: nr
Posted date: Jul 5, 2005 12:34 AM
Number of letters in database: 863,360,394
Number of sequences in database: 2,540,612
Lambda K H
0.323 0.137 0.431
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,737,635,087
Number of Sequences: 2540612
Number of extensions: 74981705
Number of successful extensions: 181359
Number of sequences better than 10.0: 49
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 39
Number of HSP's that attempted gapping in prelim test: 181206
Number of HSP's gapped (non-prelim): 134
length of query: 987
length of database: 863,360,394
effective HSP length: 138
effective length of query: 849
effective length of database: 512,755,938
effective search space: 435329791362
effective search space used: 435329791362
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 80 (35.4 bits)
Lotus: description of TM0181.4