BLAST2 result
BLASTP 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TM0180a.7
(199 letters)
Database: nr
2,540,612 sequences; 863,360,394 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
emb|CAB75897.1| putative protein [Arabidopsis thaliana] gi|21594... 256 3e-67
gb|AAR20776.1| At5g40300 [Arabidopsis thaliana] gi|10178139|dbj|... 73 4e-12
gb|AAV44168.1| unknown protein [Oryza sativa (japonica cultivar-... 68 1e-10
gb|AAF68111.1| F20B17.20 [Arabidopsis thaliana] 66 6e-10
emb|CAA75572.1| MtN24 [Medicago truncatula] 62 1e-08
gb|AAO22748.1| unknown protein [Arabidopsis thaliana] 61 2e-08
ref|XP_470105.1| hypothetical protein [Oryza sativa (japonica cu... 59 6e-08
gb|AAL34152.1| unknown protein [Arabidopsis thaliana] gi|1387817... 57 4e-07
pir||T02497 hypothetical protein At2g38480 [imported] - Arabidop... 57 4e-07
gb|AAM62879.1| unknown [Arabidopsis thaliana] 55 9e-07
emb|CAC84114.1| hypothetical protein [Gossypium hirsutum] 55 9e-07
gb|AAD50013.1| Unknown protein [Arabidopsis thaliana] gi|2329737... 53 6e-06
gb|AAL36294.1| unknown protein [Arabidopsis thaliana] 53 6e-06
dbj|BAB08777.1| unnamed protein product [Arabidopsis thaliana] g... 52 7e-06
ref|NP_910451.1| hypothetical protein [Oryza sativa (japonica cu... 51 2e-05
gb|AAM66067.1| unknown [Arabidopsis thaliana] gi|29824213|gb|AAP... 51 2e-05
ref|XP_471529.1| OSJNBa0071G03.1 [Oryza sativa (japonica cultiva... 50 4e-05
ref|NP_974535.1| transmembrane protein, putative [Arabidopsis th... 49 6e-05
dbj|BAD87450.1| integral membrane protein-like [Oryza sativa (ja... 49 8e-05
dbj|BAC43498.1| unknown protein [Arabidopsis thaliana] gi|289734... 48 1e-04
>emb|CAB75897.1| putative protein [Arabidopsis thaliana] gi|21594014|gb|AAM65932.1|
unknown [Arabidopsis thaliana]
gi|15233256|ref|NP_191099.1| integral membrane family
protein [Arabidopsis thaliana] gi|11358199|pir||T47678
hypothetical protein T22E16.50 - Arabidopsis thaliana
Length = 194
Score = 256 bits (653), Expect = 3e-67
Identities = 123/198 (62%), Positives = 149/198 (75%), Gaps = 6/198 (3%)
Query: 2 MRSPQPLRNGADGGDNNNNHRSSSPRFHSTMAEHKLRRFNSLILVFRLISFSFSLASSVF 61
MRSP RNG ++ H FHST+ KLRRFNSLIL+ RL SFSFSLAS+VF
Sbjct: 1 MRSPHAFRNGESPTLRDHTH------FHSTVTAQKLRRFNSLILLLRLASFSFSLASAVF 54
Query: 62 MLTNTHGSDSPHWYHYDTFRFVLAANAIVAVYSLFEMVASVWEISRGATVFPEVLQVWFD 121
MLTN+ GS SPHWY +D FRFV ANAIVA+YS+FEM VWE SR T++PE QVWFD
Sbjct: 55 MLTNSRGSASPHWYDFDAFRFVFVANAIVALYSVFEMGTCVWEFSRETTLWPEAFQVWFD 114
Query: 122 FGHDQVFAYLLLAASAAGTAMVRTLKETDTCTASNAFCVQSDIAVALGYAGFVFLGFTSL 181
FGHDQVF+YLLL+A +A A+ RT++ DTCTA+ AFC+QSD+A+ LG+A F+FL F+S
Sbjct: 115 FGHDQVFSYLLLSAGSAAAALARTMRGGDTCTANKAFCLQSDVAIGLGFAAFLFLAFSSC 174
Query: 182 LTGFRVVCFIINGSRFHL 199
+GFRV CF+I GSRFHL
Sbjct: 175 FSGFRVACFLITGSRFHL 192
>gb|AAR20776.1| At5g40300 [Arabidopsis thaliana] gi|10178139|dbj|BAB11584.1|
unnamed protein product [Arabidopsis thaliana]
gi|15242642|ref|NP_198846.1| integral membrane protein,
putative [Arabidopsis thaliana]
gi|45592924|gb|AAS68116.1| At5g40300 [Arabidopsis
thaliana]
Length = 270
Score = 73.2 bits (178), Expect = 4e-12
Identities = 61/187 (32%), Positives = 95/187 (50%), Gaps = 8/187 (4%)
Query: 4 SPQPLRNGADGGDNNNNHRSSSPRFHSTMAEHKLRRFNSLI----LVFRLISFSFSLAS- 58
+P + NG + + + R P F S+ + + ++ SLI L FR+I+F L S
Sbjct: 79 TPFRVTNGEEEKKVSESRRQLRPSFSSSSSTPRESKWASLIRKALLGFRVIAFVSCLVSF 138
Query: 59 SVFMLTNTHGSDSPHWYHYDTFRFVLAANAIVAVYSLFEMVASVWEISRGATVFPEVLQV 118
SV + G +Y+Y FRF LAAN I VYS F + V+ +S L+
Sbjct: 139 SVMVSDRDKGWAHDSFYNYKEFRFCLAANVIGFVYSGFMICDLVYLLSTSIRRSRHNLRH 198
Query: 119 WFDFGHDQVFAYLLLAASAAGTAMVRTLKETDTCTASNAFCVQSDIAVALGYAGFVFLGF 178
+ +FG DQ+ AYLL ASA+ +A +R + + + ++ F + +VAL Y FV F
Sbjct: 199 FLEFGLDQMLAYLL--ASASTSASIR-VDDWQSNWGADKFPDLARASVALSYVSFVAFAF 255
Query: 179 TSLLTGF 185
SL +G+
Sbjct: 256 CSLASGY 262
>gb|AAV44168.1| unknown protein [Oryza sativa (japonica cultivar-group)]
gi|55167927|gb|AAV43796.1| unknown protein [Oryza sativa
(japonica cultivar-group)]
Length = 204
Score = 68.2 bits (165), Expect = 1e-10
Identities = 41/140 (29%), Positives = 78/140 (55%), Gaps = 6/140 (4%)
Query: 48 RLISFSFSLASSVFMLTNTHGSDSPHWYHYDTFRFVLAANAIVAVYSLFEMVASVWEISR 107
R+ +++FSL + V M N HG D + HY+ +R+V+A + +Y+ ++V ++
Sbjct: 65 RVAAWAFSLLAFVVMGANDHG-DWRQFEHYEEYRYVVAIGVLAFIYTTLQLVRHGVRLTG 123
Query: 108 GATVFPEVLQVWFDFGHDQVFAYLLLAASAAGTAMVRTLKETDTCTASNAFCVQSDIAVA 167
G + +V V DF DQV AYLL++A +A + ++E A N F S +++
Sbjct: 124 GQDLQGKVA-VLVDFAGDQVTAYLLMSAVSAAIPITNRMRE----GADNVFTDSSAASIS 178
Query: 168 LGYAGFVFLGFTSLLTGFRV 187
+ + F+ L ++L++GF++
Sbjct: 179 MAFFAFLCLALSALVSGFKL 198
>gb|AAF68111.1| F20B17.20 [Arabidopsis thaliana]
Length = 393
Score = 65.9 bits (159), Expect = 6e-10
Identities = 33/120 (27%), Positives = 62/120 (51%), Gaps = 7/120 (5%)
Query: 71 SPHWYHYDTFRFVLAANAIVAVYSLFEMVASVWEISRGATVFPEVLQVWFDFGHDQVFAY 130
S +W ++++V+ A A +YSL ++ V+ + G+ + P Q W F DQ+F Y
Sbjct: 267 SSNWSFSPSYQYVVGACAGTVLYSLLQLCLGVYRLVTGSPITPSRFQAWLCFTSDQLFCY 326
Query: 131 LLLAASAAGTAM-------VRTLKETDTCTASNAFCVQSDIAVALGYAGFVFLGFTSLLT 183
L+++A +AG+ + +R D C ++FC +++ L + F+FL +S T
Sbjct: 327 LMMSAGSAGSGVTNLNKTGIRHTPLPDFCKTLSSFCNHVALSLLLVFLSFIFLASSSFFT 386
>emb|CAA75572.1| MtN24 [Medicago truncatula]
Length = 234
Score = 61.6 bits (148), Expect = 1e-08
Identities = 49/157 (31%), Positives = 82/157 (52%), Gaps = 15/157 (9%)
Query: 46 VFRLISFSFSLASSVFML-----TNTHGS----DSP---HWYHYDTFRFVLAANAIVAVY 93
VF LI+FS AS +L TN + S +P HWY +D FR+ AAN I VY
Sbjct: 77 VFCLIAFSVLGASEQRVLVSENLTNWYSSGFTIQTPYEFHWYKWDEFRYSFAANVIGFVY 136
Query: 94 SLFEMVASV-WEISRGATVFPEVLQVWFDFGHDQVFAYLLLAASAAGTAMVRTLKETDTC 152
S ++ V + I++ T+ P+ LQ +F+ DQ AY+L++AS++ LK+
Sbjct: 137 SGLQICHLVMYLITKKHTINPK-LQGYFNVAIDQTLAYILMSASSSAATAAHLLKDYWLE 195
Query: 153 TASNAFCVQSDIAVALGYAGFVFLGFTSLLTGFRVVC 189
++ F ++ +V++ + F SL++G ++C
Sbjct: 196 HGADTFIEMANASVSMSFLAFGAFALASLVSGI-ILC 231
>gb|AAO22748.1| unknown protein [Arabidopsis thaliana]
Length = 283
Score = 61.2 bits (147), Expect = 2e-08
Identities = 50/186 (26%), Positives = 84/186 (44%), Gaps = 12/186 (6%)
Query: 7 PLRNGADGGDNNNNHRSSSPRFHSTMAEHKLRRFNSLI----LVFRLISFSFSLAS-SVF 61
P R A G RSS R + A + R ++ L FRL +L S S+
Sbjct: 99 PTRKSARVGSG----RSSGQRSGAVSAILRRSRREEVVKFSALGFRLSEVVLALISFSIM 154
Query: 62 MLTNTHGSDSPHWYHYDTFRFVLAANAIVAVYSLFEMVASVWEISRGATVFPEVLQVWFD 121
T G + Y +RF L+ N + VYS F+ + + + + L+ F+
Sbjct: 155 AADKTKGWSGDSFDRYKEYRFCLSVNVVAFVYSSFQACDLAYHLVKEKHLISHHLRPLFE 214
Query: 122 FGHDQVFAYLLLAASAAGTAMVRTLKETDTCTASNAFCVQSDIAVALGYAGFVFLGFTSL 181
F DQV AYLL++AS TA V + + + + F + ++A+ + F+ F+SL
Sbjct: 215 FIIDQVLAYLLMSAS---TAAVTRVDDWVSNWGKDEFTEMASASIAMSFLAFLAFAFSSL 271
Query: 182 LTGFRV 187
++G+ +
Sbjct: 272 ISGYNL 277
>ref|XP_470105.1| hypothetical protein [Oryza sativa (japonica cultivar-group)]
gi|28876007|gb|AAO60016.1| hypothetical protein [Oryza
sativa (japonica cultivar-group)]
Length = 156
Score = 59.3 bits (142), Expect = 6e-08
Identities = 37/150 (24%), Positives = 74/150 (48%), Gaps = 6/150 (4%)
Query: 45 LVFRLISFSFSLASSVFMLTNTHGSDSPHWY-HYDTFRFVLAANAIVAVYSLFEMVASVW 103
L+ R +++ FSL + V M +N HG + +Y + + L + I +Y+ ++ V
Sbjct: 10 LLLRAVAWLFSLLALVVMASNKHGHGGAQDFDNYPEYTYCLGISIIAVLYTTAQVTRDVH 69
Query: 104 EISRGATVFP-EVLQVWFDFGHDQVFAYLLLAASAAGTAMVRTLKETDTCTASNAFCVQS 162
+S G V DF DQV AYLL++A +A + +++ A N F +
Sbjct: 70 RLSWGRDVIAGRKAAAVVDFAGDQVVAYLLMSALSAAAPVTDYMRQ----AADNLFTDSA 125
Query: 163 DIAVALGYAGFVFLGFTSLLTGFRVVCFII 192
A+++ + F+ G ++L++G+ + ++
Sbjct: 126 AAAISMAFLAFLAAGLSALVSGYNLAMEVL 155
>gb|AAL34152.1| unknown protein [Arabidopsis thaliana] gi|13878171|gb|AAK44163.1|
unknown protein [Arabidopsis thaliana]
gi|20197397|gb|AAC67370.2| expressed protein
[Arabidopsis thaliana] gi|20197244|gb|AAM14993.1|
expressed protein [Arabidopsis thaliana]
gi|18404766|ref|NP_565891.1| integral membrane protein,
putative [Arabidopsis thaliana]
Length = 188
Score = 56.6 bits (135), Expect = 4e-07
Identities = 35/142 (24%), Positives = 72/142 (50%), Gaps = 9/142 (6%)
Query: 46 VFRLISFSFSLASSVFMLTNTHGSDSPHWYHYDTFRFVLAANAIVAVYSLFEMVASVWEI 105
+ R I FSL + + M++N HG ++ Y+ +R+VLA + I +Y+ ++ A +
Sbjct: 50 ITRGICLLFSLIAFLIMVSNKHGYGR-NFNDYEEYRYVLAISIISTLYTAWQTFAHFSK- 107
Query: 106 SRGATVFPEVLQVWFDFGHDQVFAYLLLAASAAGTAMVRTLKETDTCTASNAFCVQSDIA 165
+F + DF DQ+ AYLL++A+++ + +E N F + A
Sbjct: 108 ---REIFDRRTSILVDFSGDQIVAYLLISAASSAIPLTNIFREGQ----DNIFTDSAASA 160
Query: 166 VALGYAGFVFLGFTSLLTGFRV 187
+++ F+ L ++L +G+++
Sbjct: 161 ISMAIFAFIALALSALFSGYKL 182
>pir||T02497 hypothetical protein At2g38480 [imported] - Arabidopsis thaliana
Length = 243
Score = 56.6 bits (135), Expect = 4e-07
Identities = 35/142 (24%), Positives = 72/142 (50%), Gaps = 9/142 (6%)
Query: 46 VFRLISFSFSLASSVFMLTNTHGSDSPHWYHYDTFRFVLAANAIVAVYSLFEMVASVWEI 105
+ R I FSL + + M++N HG ++ Y+ +R+VLA + I +Y+ ++ A +
Sbjct: 105 ITRGICLLFSLIAFLIMVSNKHGYGR-NFNDYEEYRYVLAISIISTLYTAWQTFAHFSK- 162
Query: 106 SRGATVFPEVLQVWFDFGHDQVFAYLLLAASAAGTAMVRTLKETDTCTASNAFCVQSDIA 165
+F + DF DQ+ AYLL++A+++ + +E N F + A
Sbjct: 163 ---REIFDRRTSILVDFSGDQIVAYLLISAASSAIPLTNIFREGQ----DNIFTDSAASA 215
Query: 166 VALGYAGFVFLGFTSLLTGFRV 187
+++ F+ L ++L +G+++
Sbjct: 216 ISMAIFAFIALALSALFSGYKL 237
>gb|AAM62879.1| unknown [Arabidopsis thaliana]
Length = 188
Score = 55.5 bits (132), Expect = 9e-07
Identities = 34/142 (23%), Positives = 72/142 (49%), Gaps = 9/142 (6%)
Query: 46 VFRLISFSFSLASSVFMLTNTHGSDSPHWYHYDTFRFVLAANAIVAVYSLFEMVASVWEI 105
+ R I FSL + + M++N HG ++ Y+ +R+VL+ + I +Y+ ++ A +
Sbjct: 50 ITRGICLLFSLIAFLIMVSNKHGYGR-NFNDYEEYRYVLSISIISTLYTAWQTFAHFSK- 107
Query: 106 SRGATVFPEVLQVWFDFGHDQVFAYLLLAASAAGTAMVRTLKETDTCTASNAFCVQSDIA 165
+F + DF DQ+ AYLL++A+++ + +E N F + A
Sbjct: 108 ---REIFDRRTSILVDFSGDQIVAYLLISAASSAIPLTNIFREGQ----DNIFTDSAASA 160
Query: 166 VALGYAGFVFLGFTSLLTGFRV 187
+++ F+ L ++L +G+++
Sbjct: 161 ISMAIFAFIALALSALFSGYKL 182
>emb|CAC84114.1| hypothetical protein [Gossypium hirsutum]
Length = 207
Score = 55.5 bits (132), Expect = 9e-07
Identities = 49/195 (25%), Positives = 83/195 (42%), Gaps = 34/195 (17%)
Query: 3 RSPQPLRNGADGGDNNNNHRSSSPRFHSTMAEHKLRRFNSLILVFRLISFSFSLASSVFM 62
RSP L + N N ++S R TM RL+ + +A+ V M
Sbjct: 15 RSPMALMGSSR---NENQEVNTSMRTAETM--------------LRLVPMALGVAALVVM 57
Query: 63 LTNTHGSD--SPHWYHYDTFRFVLAANAIVAVYSLFEMVASVWEISRGATVFPEVL-QVW 119
L N+ +D S + FR+++ AN I A YSL + + A P + + W
Sbjct: 58 LKNSQSNDFGSVSYSDLGAFRYLVHANGICAGYSLLSAIIA-------AVPSPSTMPRAW 110
Query: 120 FDFGHDQVFAYLLLAASAAGTAMVRTLKETDT-------CTASNAFCVQSDIAVALGYAG 172
F DQ+ Y++L A+A T ++ + D+ C FC ++ IAV + +
Sbjct: 111 TFFLLDQILTYVILGAAAVSTEVLYLANKGDSAITWSAACGTFAGFCHKATIAVVITFVA 170
Query: 173 FVFLGFTSLLTGFRV 187
+ SL++ +R+
Sbjct: 171 VICYAVLSLVSSYRL 185
>gb|AAD50013.1| Unknown protein [Arabidopsis thaliana] gi|23297373|gb|AAN12953.1|
unknown protein [Arabidopsis thaliana]
gi|21555505|gb|AAM63874.1| unknown [Arabidopsis
thaliana] gi|18394453|ref|NP_564017.1| integral membrane
family protein [Arabidopsis thaliana]
gi|25511643|pir||B86308 F20D23.10 protein - Arabidopsis
thaliana
Length = 204
Score = 52.8 bits (125), Expect = 6e-06
Identities = 46/151 (30%), Positives = 68/151 (44%), Gaps = 19/151 (12%)
Query: 46 VFRLISFSFSLASSVFML----TNTHGSDSPHWYHYDTFRFVLAANAIVAVYSLFEMVAS 101
+ RL +A+ V ML TN GS S + + FR+++ AN I A YSL A+
Sbjct: 36 MLRLAPVGLCVAALVVMLKDSETNEFGSIS--YSNLTAFRYLVHANGICAGYSLLS--AA 91
Query: 102 VWEISRGATVFPEVLQVWFDFGHDQVFAYLLLAASAAGTAMVRTLKETDTCTASNAFCVQ 161
+ + R ++ P +VW F DQ+ YL+LAA A ++ D+ + C
Sbjct: 92 IAAMPRSSSTMP---RVWTFFCLDQLLTYLVLAAGAVSAEVLYLAYNGDSAITWSDAC-- 146
Query: 162 SDIAVALGYAGFVFLGFTSLLTGFRVVCFII 192
Y GF S++ F VVCF I
Sbjct: 147 ------SSYGGFCHRATASVIITFFVVCFYI 171
>gb|AAL36294.1| unknown protein [Arabidopsis thaliana]
Length = 204
Score = 52.8 bits (125), Expect = 6e-06
Identities = 46/151 (30%), Positives = 68/151 (44%), Gaps = 19/151 (12%)
Query: 46 VFRLISFSFSLASSVFML----TNTHGSDSPHWYHYDTFRFVLAANAIVAVYSLFEMVAS 101
+ RL +A+ V ML TN GS S + + FR+++ AN I A YSL A+
Sbjct: 36 MLRLAPVGLCVAALVVMLKDSETNEFGSIS--YSNLTAFRYLVHANGICAGYSLLS--AA 91
Query: 102 VWEISRGATVFPEVLQVWFDFGHDQVFAYLLLAASAAGTAMVRTLKETDTCTASNAFCVQ 161
+ + R ++ P +VW F DQ+ YL+LAA A ++ D+ + C
Sbjct: 92 IAAMPRSSSTMP---RVWTFFCLDQLLTYLVLAAGAVSAEVLYLAYNGDSAITWSDAC-- 146
Query: 162 SDIAVALGYAGFVFLGFTSLLTGFRVVCFII 192
Y GF S++ F VVCF I
Sbjct: 147 ------SSYGGFCHRATASVIITFFVVCFYI 171
>dbj|BAB08777.1| unnamed protein product [Arabidopsis thaliana]
gi|28394049|gb|AAO42432.1| unknown protein [Arabidopsis
thaliana] gi|27754655|gb|AAO22772.1| unknown protein
[Arabidopsis thaliana] gi|15240435|ref|NP_200309.1|
integral membrane family protein [Arabidopsis thaliana]
Length = 194
Score = 52.4 bits (124), Expect = 7e-06
Identities = 52/186 (27%), Positives = 84/186 (44%), Gaps = 26/186 (13%)
Query: 16 DNNNNH-----RSSSPRFHSTMAEHKLRRFNSLILVFRLISFSFSLASSVFMLTNTHGSD 70
DNNNN+ RSSS + A L+ +S + RL S+A+ +TN +
Sbjct: 3 DNNNNNTREEERSSSSKQQQPQAPMSLKIIDSCL---RLSVVPLSVATIWLTVTNHESNP 59
Query: 71 SPHWYHYDTF---RFVLAANAIVAVYSLFEMVASVWEISRGATVFPEVLQVWFDFGHDQV 127
Y++ ++++ +AI A+Y+L V+S W V V + W F DQV
Sbjct: 60 DYGNLEYNSIMGLKYMVGVSAISAIYALLSTVSS-W-------VTCLVSKAWLFFIPDQV 111
Query: 128 FAYLLLAASAAGTAMVRTLKETDTCTASNAFCVQ-----SDIAVALGYAGFV--FLGFTS 180
AY++ + A T +V L + D + C S + +ALG FV F F S
Sbjct: 112 LAYVMTTSVAGATEIVYLLNKGDKIVTWSEMCSSYPHYCSKLTIALGLHVFVLFFFLFLS 171
Query: 181 LLTGFR 186
+++ +R
Sbjct: 172 VISAYR 177
>ref|NP_910451.1| hypothetical protein [Oryza sativa (japonica cultivar-group)]
gi|29837176|dbj|BAC75558.1| hypothetical protein [Oryza
sativa (japonica cultivar-group)]
Length = 199
Score = 51.2 bits (121), Expect = 2e-05
Identities = 34/147 (23%), Positives = 66/147 (44%), Gaps = 9/147 (6%)
Query: 41 NSLILVFRLISFSFSLASSVFMLTNTHGSDSPHWYHYDTFRFVLAANAIVAVYSLFEMVA 100
+ ++LV R + +L + + + HG D + Y +R++L + ++YS + A
Sbjct: 52 DGIVLVLRAAAALLALVAMALVASCRHG-DWMEFTRYQEYRYLLGVAVVASLYSALQ-AA 109
Query: 101 SVWEISRGATVFPEVLQVWFDFGHDQVFAYLLLAASAAGTAMVRTLKETDTCTASNAFCV 160
+ R T + + DF DQ YLL+ AS+A + ++ N F
Sbjct: 110 RTFRRMRAGTAYAAT---FLDFAGDQAVGYLLITASSAALPITIRMRS----AVVNTFTD 162
Query: 161 QSDIAVALGYAGFVFLGFTSLLTGFRV 187
+++ + F L F++L+ GFR+
Sbjct: 163 VVAASISFAFLAFAALAFSALIAGFRL 189
>gb|AAM66067.1| unknown [Arabidopsis thaliana] gi|29824213|gb|AAP04067.1| unknown
protein [Arabidopsis thaliana]
gi|28393080|gb|AAO41974.1| unknown protein [Arabidopsis
thaliana] gi|18414659|ref|NP_567497.1| integral membrane
family protein [Arabidopsis thaliana]
Length = 182
Score = 50.8 bits (120), Expect = 2e-05
Identities = 44/161 (27%), Positives = 67/161 (41%), Gaps = 14/161 (8%)
Query: 38 RRFNSLILVFRLISFSFSLASSVFMLTNTHGS------DSPHWYHYDTFRFVLAANAIVA 91
RR L+ R F+L + + ++T+T + + F++ AN I A
Sbjct: 6 RRMRLTELLLRCSISVFALLALILVVTDTEVKLIFTIKKTAKYTDMKAVVFLVVANGIAA 65
Query: 92 VYSLFEMVASVWEISRGATVFPEVLQVWFDFGHDQVFAYLLLAASAAGTAMVRTLKETD- 150
VYSL + V V +G +F + L W F DQ AYL +AA AA +E +
Sbjct: 66 VYSLLQSVRCVVGTMKGKVLFSKPL-AWAFFSGDQAMAYLNVAAIAATAESGVIAREGEE 124
Query: 151 ------TCTASNAFCVQSDIAVALGYAGFVFLGFTSLLTGF 185
CT FC Q I V+ + + F S ++ F
Sbjct: 125 DLQWMRVCTMYGKFCNQMAIGVSSALLASIAMVFVSCISAF 165
>ref|XP_471529.1| OSJNBa0071G03.1 [Oryza sativa (japonica cultivar-group)]
gi|38346597|emb|CAD39788.2| OSJNBa0071G03.1 [Oryza
sativa (japonica cultivar-group)]
gi|38344646|emb|CAE05079.2| OSJNBa0094P09.18 [Oryza
sativa (japonica cultivar-group)]
Length = 206
Score = 50.1 bits (118), Expect = 4e-05
Identities = 48/177 (27%), Positives = 82/177 (46%), Gaps = 22/177 (12%)
Query: 22 RSSSPRFHSTMAEHKLRRFNSLILVFRLISFSFSLASSVFML----TNTHGSDSPHWYHY 77
+SS S+ A ++R +L+ R +A+ ML TN +G+ S +
Sbjct: 18 QSSGDLQASSAAAARVRPVETLL---RAAPLGLCVAAMAIMLRNSVTNEYGTVS--YSDL 72
Query: 78 DTFRFVLAANAIVAVYSLFEMVASVWEISRGATVFPEVLQVWFDFGHDQVFAYLLLAASA 137
F++++ AN + A YSL A + R AT+ + W F DQVF YL+LAA A
Sbjct: 73 GGFKYLVYANGLCAAYSLAS--AFYIAVPRPATLS----RSWVVFLLDQVFTYLILAAGA 126
Query: 138 AGTAMV-------RTLKETDTCTASNAFCVQSDIAVALGYAGFVFLGFTSLLTGFRV 187
A ++ + + ++ C FC Q+ +VA+ +A SL++ +R+
Sbjct: 127 ASAELLYLAYNGDKEVTWSEACGVFGGFCRQARTSVAITFASVACYILLSLISSYRL 183
>ref|NP_974535.1| transmembrane protein, putative [Arabidopsis thaliana]
Length = 208
Score = 49.3 bits (116), Expect = 6e-05
Identities = 34/150 (22%), Positives = 65/150 (42%), Gaps = 11/150 (7%)
Query: 45 LVFRLISFSFSLASSVFMLTNTHGSDSPH-------WYHYDTFRFVLAANAIVAVYSLFE 97
LV R I+ S++ + N H + Y + I VY+ +
Sbjct: 57 LVLRFITMVLCFVSALSLAVNVQRPSKRHLTQNSSSFASYPELLYCFGVAVIGFVYTSLQ 116
Query: 98 MVASVWEISRGATVFPEVLQVWFDFGHDQVFAYLLLAASAAGTAMVRTLKETDTCTASNA 157
V +I+ + E L + F DQV YLL+++S+ A ++ + E T N
Sbjct: 117 TFKGVCDITHRGVLISEPLSDYISFIFDQVICYLLVSSSSVAIAWIQHINEDAIKTLRN- 175
Query: 158 FCVQSDIAVALGYAGFVFLGFTSLLTGFRV 187
S ++V++ ++ F+ L + LL+G+++
Sbjct: 176 ---NSIVSVSMSFSAFLVLTLSGLLSGYKL 202
>dbj|BAD87450.1| integral membrane protein-like [Oryza sativa (japonica
cultivar-group)] gi|57899555|dbj|BAD87069.1| integral
membrane protein-like [Oryza sativa (japonica
cultivar-group)]
Length = 204
Score = 48.9 bits (115), Expect = 8e-05
Identities = 31/151 (20%), Positives = 69/151 (45%), Gaps = 10/151 (6%)
Query: 42 SLILVFRLISFSFSLASSVFMLTNTHGSDSP---HWYHYDTFRFVLAANAIVAVYSLFEM 98
++ LV ++S + +++ G + P +W D+ +++ +A+ A Y L ++
Sbjct: 46 AVALVMAVLSMALMISAKQRGSLKIFGIEIPLYANWSFSDSLEYLVGMSAVSAAYCLAQL 105
Query: 99 VASVWEISRGATVFPEVLQVWFDFGHDQVFAYLLLAASAAGTAM-------VRTLKETDT 151
+ + + + A V W F DQ+FAY +++A +A A+ +R +
Sbjct: 106 LLTAHKAVKNAPVVQSRNYAWLLFTGDQIFAYAMMSAGSAAAAVANLNRTGIRHTALPNF 165
Query: 152 CTASNAFCVQSDIAVALGYAGFVFLGFTSLL 182
C FC S ++A + +FL ++++
Sbjct: 166 CKPLPRFCDLSAASIACAFLSCIFLAASAVI 196
>dbj|BAC43498.1| unknown protein [Arabidopsis thaliana] gi|28973479|gb|AAO64064.1|
unknown protein [Arabidopsis thaliana]
gi|30687915|ref|NP_181485.2| integral membrane protein,
putative [Arabidopsis thaliana]
Length = 178
Score = 48.1 bits (113), Expect = 1e-04
Identities = 35/114 (30%), Positives = 62/114 (53%), Gaps = 9/114 (7%)
Query: 42 SLILVFRLISFSFSLASSVFMLTNTH----GSDSPHWYHYDTF--RFVLAANAIVAVYSL 95
+++L+ R+++ +F L + V + TNT S S D + R++L+A I VY++
Sbjct: 15 TVLLLLRVLTAAFLLITVVLISTNTVTLEISSTSIKLPFNDVYAYRYMLSAAVIGLVYAV 74
Query: 96 FEMVASVWEISRGATVFPEVLQVWFDFGHDQVFAYLLLAASAAGTAMVRTLKET 149
++ ++ + + G T L FDF D+V +YLL SAAG + + LK+T
Sbjct: 75 VQLFLTISQFATGKT---HPLTYQFDFYGDKVISYLLATGSAAGFGVSKDLKDT 125
Database: nr
Posted date: Jul 5, 2005 12:34 AM
Number of letters in database: 863,360,394
Number of sequences in database: 2,540,612
Lambda K H
0.328 0.137 0.421
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 316,265,652
Number of Sequences: 2540612
Number of extensions: 11270965
Number of successful extensions: 44486
Number of sequences better than 10.0: 52
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 41
Number of HSP's that attempted gapping in prelim test: 44425
Number of HSP's gapped (non-prelim): 63
length of query: 199
length of database: 863,360,394
effective HSP length: 121
effective length of query: 78
effective length of database: 555,946,342
effective search space: 43363814676
effective search space used: 43363814676
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 72 (32.3 bits)
Lotus: description of TM0180a.7