BLAST2 result
BLASTP 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TM0178.13
(433 letters)
Database: nr
2,540,612 sequences; 863,360,394 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
emb|CAC44110.1| gag polyprotein [Cicer arietinum] 231 3e-59
emb|CAC44106.1| gag polyprotein [Cicer arietinum] 181 4e-44
gb|AAO45751.1| gag-protease polyprotein [Cucumis melo] 125 3e-27
gb|AAP53268.1| putative 22 kDa kafirin cluster; Ty3-Gypsy type [... 122 2e-26
gb|AAL59229.1| gag-pol [Zea mays] 119 2e-25
gb|AAX94938.1| retrotransposon protein, putative, Ty3-gypsy sub-... 118 4e-25
gb|AAV59415.1| putative polyprotein [Oryza sativa (japonica cult... 112 2e-23
emb|CAD41450.1| OSJNBa0019D11.8 [Oryza sativa (japonica cultivar... 112 2e-23
emb|CAD39763.2| OSJNBa0059D20.6 [Oryza sativa (japonica cultivar... 112 2e-23
gb|AAP52432.1| putative retroelement [Oryza sativa (japonica cul... 112 3e-23
ref|XP_470061.1| putative polyprotein [Oryza sativa (japonica cu... 112 3e-23
gb|AAP53838.1| putative gag-pol protein [Oryza sativa (japonica ... 110 7e-23
gb|AAX96504.1| retrotransposon protein, putative, Ty3-gypsy sub-... 110 7e-23
ref|XP_474958.1| OSJNBa0036B17.3 [Oryza sativa (japonica cultiva... 110 9e-23
gb|AAU44115.1| putative polyprotein [Oryza sativa (japonica cult... 110 9e-23
gb|AAT81704.1| putative retrotransposon protein [Oryza sativa (j... 110 1e-22
ref|NP_914274.1| putative polyprotein [Oryza sativa (japonica cu... 109 1e-22
gb|AAV31373.1| putative polyprotein [Oryza sativa (japonica cult... 109 2e-22
emb|CAE03019.3| OSJNBa0091D06.9 [Oryza sativa (japonica cultivar... 108 3e-22
gb|AAP52698.1| putative polyprotein [Oryza sativa (japonica cult... 108 4e-22
>emb|CAC44110.1| gag polyprotein [Cicer arietinum]
Length = 277
Score = 231 bits (590), Expect = 3e-59
Identities = 128/269 (47%), Positives = 164/269 (60%), Gaps = 21/269 (7%)
Query: 18 NSAAREEAEAQRAATA-----ALVAAQNHAEENARRVQREEREQAAAQTRGLNDFKRQDP 72
N A R A + A A A VAAQ A + R +++ RE AA++RGL DF+R +P
Sbjct: 6 NDAPRANARNDQMAEAMNNMAASVAAQT-AAKTQRDLEKRGREIRAAESRGLVDFRRYNP 64
Query: 73 PKLSGGFDPEEADLWLQELEKIFTFLRTTAEMKVDYATYLLTGEAEYWWRGARAMMEADH 132
PK G E+AD W+QE+EKIF + A +KV YATY+L G+AEYWWR AR +M A H
Sbjct: 65 PKFKGDEGSEKADQWIQEVEKIFDMINCQAGVKVSYATYMLLGDAEYWWRSARLLMGAAH 124
Query: 133 QAITWECFRGAFLDKYFPNSARAAKEAQFLRLRQGGMTVAEYASKLESLAKHFRYFRGQI 192
+ + WE F+ FLDKYFP S R FL+L QG +TV EYA+K ESL++HFR+FR +I
Sbjct: 125 EEVNWESFKRKFLDKYFPMSTRTKLGDDFLKLHQGSLTVGEYAAKFESLSRHFRFFREEI 184
Query: 193 DEGYMCERFIDGLSYELQRAVQPLGLNRYQVLVEKTKGIEAIDNAR----GKFQSQNKPN 248
DE +MC RF DGL YE+Q +V PLG+ R+Q LVEK + +E + N R G F S
Sbjct: 185 DEPFMCHRFQDGLKYEIQDSVLPLGIQRFQALVEKCREVEDMKNKRASRVGNFNS----- 239
Query: 249 QGNGGSAMTNQGRNDKGRHYQKKPYVRPQ 277
G S T Q R + KPY RPQ
Sbjct: 240 --GGPSRATYQNRGKQ----VAKPYNRPQ 262
>emb|CAC44106.1| gag polyprotein [Cicer arietinum]
Length = 209
Score = 181 bits (459), Expect = 4e-44
Identities = 91/184 (49%), Positives = 120/184 (64%), Gaps = 1/184 (0%)
Query: 33 AALVAAQNHAEENARRVQREEREQAAAQTRGLNDFKRQDPPKLSGGFDPEEADLWLQELE 92
AA VAAQ A + R +++ RE AA++RGL DF+R +PPK G E+AD W+QE+E
Sbjct: 27 AASVAAQT-AAKTQRDLEKRGREIRAAESRGLEDFRRYNPPKFKGDESSEKADQWIQEVE 85
Query: 93 KIFTFLRTTAEMKVDYATYLLTGEAEYWWRGARAMMEADHQAITWECFRGAFLDKYFPNS 152
KI ++ A + V YATY+L G+AEYW R R +M A H+ + WE F+ FLDKYFP S
Sbjct: 86 KIIDMIKCQAGVTVSYATYMLLGDAEYWRRSGRLLMGAAHEEVNWESFKRKFLDKYFPMS 145
Query: 153 ARAAKEAQFLRLRQGGMTVAEYASKLESLAKHFRYFRGQIDEGYMCERFIDGLSYELQRA 212
R FL+L QG MTV EYA+K SL++HFR+ R + DE +M F DGL YE+Q +
Sbjct: 146 TRTKLGDDFLKLHQGSMTVGEYAAKFGSLSRHFRFVREETDEPFMIHCFQDGLKYEIQDS 205
Query: 213 VQPL 216
V PL
Sbjct: 206 VLPL 209
>gb|AAO45751.1| gag-protease polyprotein [Cucumis melo]
Length = 429
Score = 125 bits (314), Expect = 3e-27
Identities = 94/349 (26%), Positives = 152/349 (42%), Gaps = 38/349 (10%)
Query: 55 EQAAAQTRGLNDFKRQDPPKLSGGF-DPEEADLWLQELEKIFTFLRTTAEMKVDYATYLL 113
+Q +A+ + L DF++ +P G DP A +WL LE IF +++ + KV A ++L
Sbjct: 51 DQLSAEAKHLRDFRKYNPTTFDGSLEDPTRAQMWLSSLETIFRYMKCPEDQKVQCAVFML 110
Query: 114 TGEAEYWWRGARAMMEADHQAITWECFRGAFLDKYFPNSARAAKEAQFLRLRQGGMTVAE 173
T WW M+ D ITW+ F+ +F K+F S R AK +FL L QG MTV +
Sbjct: 111 TDRGTAWWETTERMLGGDVSQITWQQFKESFYAKFFSASLRDAKRQEFLNLEQGDMTVEQ 170
Query: 174 YASKLESLAKHFRYFRGQI--DEGYMCERFIDGLSYELQRAVQPLGLNRYQVLVEKTKGI 231
Y ++ + L++ F ++ E ++F+ GL ++Q V+ ++
Sbjct: 171 YDAEFDMLSR----FAPEMIATEAARADKFVRGLRLDIQGLVR-----AFRPATHADALR 221
Query: 232 EAIDNARGKFQSQNKPNQGNGGSAMTNQGRNDKGRHYQKKPYVRPQGQGTASGSFYP--- 288
A+D Q + N + G+ K +++P PQ G F
Sbjct: 222 LAVD-----LSLQERANSSKTAGRGSTSGQKRKA---EQQPVPVPQRNFRPGGEFRSFQQ 273
Query: 289 ---TGGNAIAPRPLAVSLDGVTCFKCNQKGHYASHCPEGPLMCWNCNKPGHLARDCRIPK 345
G A +PL TC K H+ C G C+ C + GH A C + +
Sbjct: 274 KPFEAGEAARGKPLC-----TTCGK-----HHLGRCLFGTRTCFKCRQEGHTADRCPL-R 322
Query: 346 VEDAANVAGARRPTAGGRVYFISGTEVDEDEGLIHGNREIPGNSLIVLF 394
V A GA P GR + + TE ++ ++ G + G+ +VLF
Sbjct: 323 VTGIAQNQGAGAPHQ-GRAFATNRTEAEKAGTVVTGTLPVLGHYALVLF 370
>gb|AAP53268.1| putative 22 kDa kafirin cluster; Ty3-Gypsy type [Oryza sativa
(japonica cultivar-group)] gi|37533358|ref|NP_920981.1|
putative 22 kDa kafirin cluster; Ty3-Gypsy type [Oryza
sativa (japonica cultivar-group)]
gi|21327374|gb|AAM48279.1| Putative 22 kDa kafirin
cluster; Ty3-Gypsy type [Oryza sativa (japonica
cultivar-group)] gi|18767374|gb|AAL79340.1| Putative 22
kDa kafirin cluster; Ty3-Gypsy type [Oryza sativa]
Length = 1230
Score = 122 bits (307), Expect = 2e-26
Identities = 89/289 (30%), Positives = 134/289 (45%), Gaps = 29/289 (10%)
Query: 43 EENARRVQREER-EQAAAQTRGLNDFKRQDPPKLSGGFDPEEADLWLQELEKIFTFLRTT 101
E R+++ ER ++ A GL +F++ PP SG +P EA+ W+ +EK F + T
Sbjct: 49 ETQQRQMEILERITKSDANRNGLGEFQKLKPPTFSGTANPLEAEEWIVAMEKSFEAMGCT 108
Query: 102 AEMKVDYATYLLTGEAEYWWRGARAMMEADHQAITWECFRGAFLDKYFPNSARAAKEAQF 161
+ K+ YATY+L A WW A ++ ITWE F+ AF KYFP S + KE +F
Sbjct: 109 DKEKIIYATYMLQSSAFEWW-DAHKKSYSERIFITWELFKEAFYKKYFPESVKRMKEKEF 167
Query: 162 LRLRQGGMTVAEYASKLESLAKHFRYFRGQIDEGYMCERFIDGLSYELQRAVQPLGLNRY 221
L L+QG +VAEY + LA+ F +G RF GL L+R V+ L +
Sbjct: 168 LELKQGNKSVAEYEIEFSRLARFAPEF--VQTDGSKARRFESGLRQPLKRRVEAFELTIF 225
Query: 222 QVLVEKTKGIE------AIDNA--RGKFQSQNKPNQGNGGSAMTNQGRNDKGRHYQKKPY 273
+ +V K + +E I++ + KF++ N NQG + Q + + +K
Sbjct: 226 REVVSKAQLLEKGYHEQRIEHGQPQKKFKTNNPQNQGRFRGNYSGQMQRKSSENQGRK-- 283
Query: 274 VRPQGQGTASGSFYPTGGNAIAPRPLAVSLDGVTCFKCNQKGHYASHCP 322
P QG+ S P CF+C + GH CP
Sbjct: 284 -CPICQGSHVPSICPNCWG--------------RCFECGEAGHTRYQCP 317
>gb|AAL59229.1| gag-pol [Zea mays]
Length = 1470
Score = 119 bits (297), Expect = 2e-25
Identities = 105/372 (28%), Positives = 165/372 (44%), Gaps = 37/372 (9%)
Query: 35 LVAAQNHAEENARRVQREEREQAAAQTRGLN-DFKRQDPPKLSGGFDPEEADLWLQELEK 93
L AA ++N +++Q+ +++Q A R + DF PP S DP +AD WL+ + K
Sbjct: 7 LTAAVQQLQQN-QQIQQPQQQQYAPPARDKHRDFMSHHPPTFSHAVDPLDADDWLKVIGK 65
Query: 94 IFTFLRTTAEMKVDYATYLLTGEAEYWWRGARAMMEADHQAITWECFRGAFLDKYFPNSA 153
+ KV YA+ L G A WW A + ITW+ F+ F + P+
Sbjct: 66 KLDITQCNDREKVLYASGRLEGAASDWW-DAFTAAHPNADTITWQEFQENFRSHHIPSGI 124
Query: 154 RAAKEAQFLRLRQGGMTVAEYASKLESLAKHFRYFRGQID-EGYMCERFIDGLSYELQRA 212
K+ +FL L QG M+V+EY + L+ RY ++D + ERF++GL L
Sbjct: 125 MKLKK-EFLSLTQGNMSVSEYRDRFTQLS---RYAPEEVDTDEKRQERFLEGLIGPLNYQ 180
Query: 213 VQPLGLNRYQVLVEKTKGIEA----IDNARGKFQSQN----KPNQGNGGSAMT-NQG--- 260
+Q +Q L+ K G+E+ + + + KFQ Q+ +PN G + NQG
Sbjct: 181 LQSHTFPNFQTLLNKAIGLESKRKELSDHKRKFQGQSSRNTRPNNAQGSQFRSGNQGGNN 240
Query: 261 -----------RNDKGRHYQKKPYVRPQGQGTASGSFYPTGGNAIAPRPLAVSLDGVTCF 309
RN++ ++ Q+ Q G S + N A V +G CF
Sbjct: 241 YQVQRSGQQGQRNNQSQNQQRSNPQTNQRSGGNSQNRQGGTNNTQARNNAPVQPNG--CF 298
Query: 310 KCNQKGHYASHCPEGPLMCWNCNKPGHLARDCRIPKVEDAANVAGARRPTAGGRVYFISG 369
KC + GHYA++CP K + D P A N A + + GRV ++
Sbjct: 299 KCGELGHYANNCPRRNQQ--TPQKSNNQRNDQNTPARGSAQNKAPQNQ--SRGRVNHVTA 354
Query: 370 TEVDEDEGLIHG 381
V ED +++G
Sbjct: 355 ESVPEDADIVYG 366
>gb|AAX94938.1| retrotransposon protein, putative, Ty3-gypsy sub-class [Oryza
sativa (japonica cultivar-group)]
Length = 1436
Score = 118 bits (295), Expect = 4e-25
Identities = 109/409 (26%), Positives = 160/409 (38%), Gaps = 54/409 (13%)
Query: 12 MAQQVTNSAAREEAEAQRAATAALVAAQNHAEENARRVQREEREQAAAQTRGLNDFKRQD 71
MA + S + EE + T A V A + +Q Q +F R
Sbjct: 1 MASRRRASISNEETQTPDLTTLAGVMATQ-----TQLLQAIANNQGNRGRSSFGEFMRTK 55
Query: 72 PPKLSGGFDPEEADLWLQELEKIFTFLRTTAEMKVDYATYLLTGEAEYWWRGARAMMEAD 131
PP + +P EA+ WL+ +EK T +R KV +A L G A W + E D
Sbjct: 56 PPTFTTADEPMEAEDWLRIIEKKLTLVRVREADKVIFAVNQLEGPAGDRWDTYKEAREED 115
Query: 132 HQAITWECFRGAFLDKYFPNSARAAKEAQFLRLRQGGMTVAEYASKLESLAKHFRYFRGQ 191
TWE F AF + + P + K+ +F R+RQG TV EY ++ LA RY G
Sbjct: 116 AGEPTWEEFTAAFQENFVPAAVMRMKKNEFRRMRQGNTTVQEYLNRFTQLA---RYAIGD 172
Query: 192 I-DEGYMCERFIDGLSYELQRAVQPLGLNRYQVLVEKTKGIE----AIDNARGKFQSQNK 246
+ DE ++FI+GL+ EL+ + +Q L+ K +E +++ + + N+
Sbjct: 173 LADEEEKIDKFIEGLNDELRGPMIGQDHESFQSLINKVVRLENDQRTVEHNHKRRLAMNR 232
Query: 247 PNQGNGGSAMTNQGRNDKGRHYQKKPYVRPQGQGTASGSFYPTGGNAIAPRPLAV---SL 303
P Q G +G G K P V P S P P P +
Sbjct: 233 PPQ---GVPQRLKGATSSG---WKPPIVAPNRPAAPSNFNRPVVIQNRTPTPTLAAPGAK 286
Query: 304 DGVTCFKCNQKGHYASHCPEGPLMCWNCNKPGHLARDCRIPKVEDAANVAGARRPTAG-- 361
V CF C + GHYA++CP R + +A V G P AG
Sbjct: 287 KNVDCFNCGEYGHYANNCPH--------------PRKTPVRTGANAMTVRGTTTPAAGRG 332
Query: 362 ----------------GRVYFISGTEVDEDEGLIHGNREIPGNSLIVLF 394
G+V + E ED+G++ G I + VLF
Sbjct: 333 LFKTPQTNRTATGFGRGQVNHVRAEEAQEDQGVLMGMFSINSTPVKVLF 381
>gb|AAV59415.1| putative polyprotein [Oryza sativa (japonica cultivar-group)]
gi|50931465|ref|XP_475260.1| putative polyprotein [Oryza
sativa (japonica cultivar-group)]
gi|46391139|gb|AAS90666.1| putative polyprotein [Oryza
sativa (japonica cultivar-group)]
Length = 1649
Score = 112 bits (281), Expect = 2e-23
Identities = 97/392 (24%), Positives = 160/392 (40%), Gaps = 32/392 (8%)
Query: 24 EAEAQRAATAALVAAQNHAEENARRVQREEREQAAAQTRGLNDFKRQDPPKLSGGFDPEE 83
+ + + T A+ + Q++A N R + L DF R PP+ S +P E
Sbjct: 253 QTQILQGLTTAIASFQHNAHGNGHPHMGNNRSK-------LTDFLRSRPPEFSQTVEPVE 305
Query: 84 ADLWLQELEKIFTFLRTTAEMKVDYATYLLTGEAEYWWRGARAMMEADHQAITWECFRGA 143
AD WL+++++ ++ T K YA++ L G A WW + I W+ F A
Sbjct: 306 ADDWLKDVDRKLNLVQCTPVEKTLYASHQLRGPAADWWEN-YCNAHPEPTNIAWDEFATA 364
Query: 144 FLDKYFPNSARAAKEAQFLRLRQGGMTVAEYASKLESLAKHFRYFRGQID-EGYMCERFI 202
F + P S K+ +F RL+QG +V EY S+ LA RY ++D + +F+
Sbjct: 365 FRAAHVPESTIDMKKEEFNRLKQGNSSVNEYLSQFNKLA---RYAPEEVDTDKKKIRKFL 421
Query: 203 DGLSYELQRAVQPLGLNRYQVLVEKTKGIE-AIDNARGKFQSQNKPNQGN---------- 251
G++ ++ + +Q ++ K +E A A +++ + +QGN
Sbjct: 422 KGIAVGMRLQLLAHDFPTFQHMINKALLLEDARKEATEEYKKRKSNHQGNSSRGAPRPRY 481
Query: 252 GGSAMTNQGRNDKGRH--YQKKPYV-RPQGQGTASGSFYPTGGNAIAPRPLAVSLDGVTC 308
G +Q R Y +P + RP Q T N++ V C
Sbjct: 482 GQPMQYHQSVTQANRQPGYAPRPQINRPAPQPQQRAPSSDTAPNSVTSFKSPQGPSAVQC 541
Query: 309 FKCNQKGHYASHCPEGPLMCWNCNKPGHLARDCRI------PKVEDAANVAGARRPTAGG 362
F+CNQ GHYA CP+ P + + G AR + P + + + A G
Sbjct: 542 FRCNQMGHYARQCPQNPTNTNSGHANGSTARTPTLAAAQSRPSSQASGQGSRASNNFGRG 601
Query: 363 RVYFISGTEVDEDEGLIHGNREIPGNSLIVLF 394
RV I + ++ G + IVLF
Sbjct: 602 RVNHIQAETTQDAPDVVMGMFSVNSVPAIVLF 633
>emb|CAD41450.1| OSJNBa0019D11.8 [Oryza sativa (japonica cultivar-group)]
gi|50926528|ref|XP_473211.1| OSJNBa0019D11.8 [Oryza
sativa (japonica cultivar-group)]
Length = 1470
Score = 112 bits (281), Expect = 2e-23
Identities = 100/354 (28%), Positives = 143/354 (40%), Gaps = 21/354 (5%)
Query: 56 QAAAQTRG------LNDFKRQDPPKLSGGFDPEEADLWLQELEKIFTFLRTTAEMKVDYA 109
QA A +G +F R PP + +P EA+ WL+ +EK T +R KV +A
Sbjct: 34 QAIASNQGNRGGSSFGEFMRTKPPTFATADEPMEAEDWLRIIEKKLTLVRVREADKVIFA 93
Query: 110 TYLLTGEAEYWWRGARAMMEADHQAITWECFRGAFLDKYFPNSARAAKEAQFLRLRQGGM 169
L G A WW + E TWE F AF + + P + K+ +F RLRQG
Sbjct: 94 VNQLEGPAGDWWDTYKEAREDGAGEPTWEEFTVAFRENFVPAAVMRMKKNEFRRLRQGNT 153
Query: 170 TVAEYASKLESLAKHFRYFRGQI-DEGYMCERFIDGLSYELQRAVQPLGLNRYQVLVEKT 228
TV EY +K LA RY G + DE ++FI+GL+ EL+ + +Q L+ K
Sbjct: 154 TVQEYLNKFTQLA---RYAIGDLADEEEKIDKFIEGLNDELRGPMIGQDHESFQSLINK- 209
Query: 229 KGIEAIDNARGKFQSQNKPNQGNGGSAMTNQGRNDKGRHYQKKPYVRPQGQGTASGSF-Y 287
+ ++N + + K T R KP V + A +F
Sbjct: 210 --VVRLENDQRTVEHNRKRRLAMSRLPQTVPQRLKGATPSGWKPPVMVTNRPAALSNFNR 267
Query: 288 PTGGNAIAPRPLAV---SLDGVTCFKCNQKGHYASHCPEGPLMCWNCNKPGHLARDCRIP 344
P P P + V CF C + GHYA++CP R P
Sbjct: 268 PVALQNRTPTPTLAAPGAKKNVDCFNCGEYGHYANNCPHPRKTPIRTGANAMTVRGTTTP 327
Query: 345 KV-EDAANVAGARRPTAG---GRVYFISGTEVDEDEGLIHGNREIPGNSLIVLF 394
V + R T G G+V + E ED+G++ G I + VLF
Sbjct: 328 AVGRGLFKTPQSNRTTTGFGRGQVNHVRAEEAQEDQGVLMGMFSINSTPVKVLF 381
>emb|CAD39763.2| OSJNBa0059D20.6 [Oryza sativa (japonica cultivar-group)]
gi|50930427|ref|XP_474741.1| OSJNBa0059D20.6 [Oryza
sativa (japonica cultivar-group)]
Length = 1470
Score = 112 bits (280), Expect = 2e-23
Identities = 98/371 (26%), Positives = 152/371 (40%), Gaps = 55/371 (14%)
Query: 56 QAAAQTRG------LNDFKRQDPPKLSGGFDPEEADLWLQELEKIFTFLRTTAEMKVDYA 109
QA A +G +F R PP + +P +A+ WL+ +EK T +R KV +A
Sbjct: 34 QAIASNQGNRGGSSFGEFMRTKPPTFATAEEPMDAEDWLRIIEKKLTLVRVREADKVIFA 93
Query: 110 TYLLTGEAEYWWRGARAMMEADHQAITWECFRGAFLDKYFPNSARAAKEAQFLRLRQGGM 169
L G A WW + E D WE F AF D + P + K+ +F +LRQG
Sbjct: 94 ANQLEGPAGDWWDTYKEAREEDAGEPNWEEFTTAFRDNFVPAAVMRMKKNEFRKLRQGNT 153
Query: 170 TVAEYASKLESLAKHFRYFRGQIDEGYMCERFIDGLSYELQRAVQPLGLNRYQVLVEKTK 229
TV EY ++ LA++ R DE ++FI+GL+ EL+ + + +Q L+ K
Sbjct: 154 TVQEYLNRFTQLARYAT--RDLADEEEKIDKFIEGLNDELRGPMIGQDHDSFQSLINKVV 211
Query: 230 GIE----AIDNARGKFQSQNKPNQGNGGSAMTNQGRNDKGRHYQKKPYVRPQGQGTASGS 285
+E +++ R + + N+P Q T R +P V + AS +
Sbjct: 212 RLENDRKVVEHNRKRRLAMNRPPQ-------TAPQRPKGTTPSAWRPTVVTTSRPAASSN 264
Query: 286 FY-PTGGNAIAPRPLAVSLDGV---TCFKCNQKGHYASHCPEGPLMCWNCNKPGHLARDC 341
F+ P AP P + V +CF C + GH+A+ CP
Sbjct: 265 FHRPVTIQNRAPTPNQAATGSVRPGSCFNCGEYGHFANKCPH--------------PNKT 310
Query: 342 RIPKVEDAANVAGARRPTAG------------------GRVYFISGTEVDEDEGLIHGNR 383
I +A + G P AG G+V + E ED+G++ G
Sbjct: 311 PIRTGANATAIHGTATPAAGRGLFRTPQTNRTATGFGRGQVNHVRAEEAQEDQGVLMGMF 370
Query: 384 EIPGNSLIVLF 394
+ + VLF
Sbjct: 371 SLNSTPVKVLF 381
>gb|AAP52432.1| putative retroelement [Oryza sativa (japonica cultivar-group)]
gi|37531686|ref|NP_920145.1| putative retroelement
[Oryza sativa (japonica cultivar-group)]
gi|21671935|gb|AAM74297.1| Putative retroelement [Oryza
sativa (japonica cultivar-group)]
Length = 974
Score = 112 bits (279), Expect = 3e-23
Identities = 96/370 (25%), Positives = 151/370 (39%), Gaps = 46/370 (12%)
Query: 49 VQREEREQAAAQTRG--------LNDFKRQDPPKLSGGFDPEEADLWLQELEKIFTFLRT 100
VQ+ + +QA Q + L DF R PP S +P EA WL +EK ++
Sbjct: 40 VQQAQNQQANNQNQNPPPPPQNKLADFLRVRPPTFSSTTNPVEAGDWLHAVEKKLDLIQC 99
Query: 101 TAEMKVDYATYLLTGEAEYWWRGARAMMEADHQAITWECFRGAFLDKYFPNSARAAKEAQ 160
T + KV +A++ L G A WW R A + ITW+ F AF + P+ A K+ +
Sbjct: 100 TEQEKVSFASHQLHGPAAEWWDHFR-QGRAGGEPITWQEFTAAFKKTHIPSGVVALKKRE 158
Query: 161 FLRLRQGGMTVAEYASKLESLAKHFRYFRGQIDEGYMCERFIDGLSYELQRAVQPLGLNR 220
F L QG +V EY LA++ +E E+F++GL+ EL A+
Sbjct: 159 FRALNQGSRSVTEYLHDFNRLARYAPEDVRTDEERQ--EKFLEGLNDELSYALMATDFRD 216
Query: 221 YQVLVEKTKGIEAIDNARGKFQSQNKPNQGNGGSAMTNQGRNDKGRHYQKKPYVRPQGQG 280
+Q LV+K + ++K N+ Q + +G + + + PQ
Sbjct: 217 FQQLVDKA------------IRQEDKYNRIEQKKRRAAQFKAQQGSNQRPRLITGPQAPS 264
Query: 281 TASGSFYPTGGNAIAPRPLAVSLDGVTCFKCNQKGHYASHCPEG---------------P 325
YP GG++ RP + T + N + + CP P
Sbjct: 265 ------YPQGGSSSVARPQRQFYNNNTSNRGNDNRNMVA-CPAATPVQNQPVRKEQGSKP 317
Query: 326 LMCWNCNKPGHLARDCRIP-KVEDAANVAGARRPTAGGRVYFISGTEVDEDEGLIHGNRE 384
++C+NC PGH A C P +V++A P RV ++ E ++ G
Sbjct: 318 VICFNCGDPGHYADKCPKPRRVKNAPVPNNPNVPAPKARVNHVAAAEAQNAPDVVLGTFP 377
Query: 385 IPGNSLIVLF 394
+ VLF
Sbjct: 378 VNSIPATVLF 387
>ref|XP_470061.1| putative polyprotein [Oryza sativa (japonica cultivar-group)]
gi|40786577|gb|AAR89852.1| putative polyprotein [Oryza
sativa (japonica cultivar-group)]
Length = 1312
Score = 112 bits (279), Expect = 3e-23
Identities = 104/396 (26%), Positives = 156/396 (39%), Gaps = 54/396 (13%)
Query: 12 MAQQVTNSAAREEAEAQRAATAALVAAQNHAEENARRVQREEREQAAAQTRGLNDFKRQD 71
MA + S + EE + T A V A + +Q Q +F R
Sbjct: 1 MASRRRASTSNEETQTPDLTTLAGVMATQ-----TQLLQAIANNQGNRGGSSFGEFMRTK 55
Query: 72 PPKLSGGFDPEEADLWLQELEKIFTFLRTTAEMKVDYATYLLTGEAEYWWRGARAMMEAD 131
PP + +P +A+ WL+ +EK T +R KV +A L G A WW + E D
Sbjct: 56 PPTFTTAEEPMDAEDWLRIIEKKLTLVRVREADKVIFAANQLEGPAGDWWDTYKEAREED 115
Query: 132 HQAITWECFRGAFLDKYFPNSARAAKEAQFLRLRQGGMTVAEYASKLESLAKHFRYFRGQ 191
WE F AF D + P + K+ +F RLRQG T+ EY ++ LA RY G
Sbjct: 116 AGEPNWEEFTTAFRDNFVPAAVMRMKKNEFRRLRQGNTTIQEYLNRFTQLA---RYATGD 172
Query: 192 IDEG-YMCERFIDGLSYELQRAVQPLGLNRYQVLVEKTKGIEAIDNARGKFQSQNKPNQG 250
+ +G ++FI+GL+ EL+ + + +Q L+ K + ++N R + K
Sbjct: 173 LADGEEKIDKFIEGLNDELRGPMIGQDHDSFQSLINK---VVRLENDRKVVEHNRK---- 225
Query: 251 NGGSAMTNQGRNDKGRHYQKKPYVRPQ-GQGTASGSFYPTGGNAIAPRPLAVSLDGVTCF 309
+ + P V PQ +G S + PT P + L VT
Sbjct: 226 -------------RRLAMNRLPQVAPQRPKGATSSEWKPTVVTTNRPATSSNFLRPVTIQ 272
Query: 310 KCNQKGHYASHCPEGPLMCWNCNKPGHLARDCRIPK---VEDAAN---VAGARRPTAG-- 361
H A+ P C+NC + GH A C P + AN + G P AG
Sbjct: 273 NRAPAPHQATTGSVRPGSCFNCGEYGHFANKCPHPNKTPIRTGANATAIHGTTTPAAGRG 332
Query: 362 ----------------GRVYFISGTEVDEDEGLIHG 381
G+V + E ED+G++ G
Sbjct: 333 LFRTPQTNRTATGFGRGQVNHVRAEEAQEDQGVLMG 368
>gb|AAP53838.1| putative gag-pol protein [Oryza sativa (japonica cultivar-group)]
gi|37534498|ref|NP_921551.1| putative gag-pol protein
[Oryza sativa (japonica cultivar-group)]
Length = 1470
Score = 110 bits (276), Expect = 7e-23
Identities = 94/354 (26%), Positives = 143/354 (39%), Gaps = 47/354 (13%)
Query: 56 QAAAQTRG------LNDFKRQDPPKLSGGFDPEEADLWLQELEKIFTFLRTTAEMKVDYA 109
QA A +G +F R PP + +P +A+ WL+ +EK T +R KV +A
Sbjct: 34 QAIANNQGNRGGLSFGEFMRTKPPTFATAEEPMDAEDWLRIIEKKLTLVRVREADKVIFA 93
Query: 110 TYLLTGEAEYWWRGARAMMEADHQAITWECFRGAFLDKYFPNSARAAKEAQFLRLRQGGM 169
L G A WW + E D WE F AF D + P + K+ +F RLRQG
Sbjct: 94 ANQLEGPAGDWWDTYKEAREEDAGEPNWEEFTTAFRDNFVPAAVMRMKKNEFRRLRQGNT 153
Query: 170 TVAEYASKLESLAKHFRYFRGQIDEGYMCERFIDGLSYELQRAVQPLGLNRYQVLVEKTK 229
TV EY ++ LA++ R DE ++FI+GL+ EL+ + + +Q L+ K
Sbjct: 154 TVQEYLNRFTQLARYAT--RDLADEEEKIDKFIEGLNDELRGPMIGQDHDSFQSLINK-- 209
Query: 230 GIEAIDNARGKFQSQNKPNQGNGGSAMTNQGRNDKGRHYQKKPYVRPQGQGTASGSFY-P 288
+ ++N R + K + T R +P V + AS +F+ P
Sbjct: 210 -VVRLENDRKVVEHNRKRRLAMNRTPQTAPQRPKWTTSSAWRPTVVTTSRPAASSNFHRP 268
Query: 289 TGGNAIAPRPLAVSLDGV---TCFKCNQKGHYASHCPEGPLMCWNCNKPGHLARDCRIPK 345
AP P + V +CF C + GH+A+ CP I
Sbjct: 269 VTIQNRAPAPNQAATGSVRPGSCFNCGEYGHFANKCPH--------------PNKTPIRT 314
Query: 346 VEDAANVAGARRPTAG------------------GRVYFISGTEVDEDEGLIHG 381
+A + G P AG G+V + E ED+G++ G
Sbjct: 315 GTNATAIHGTATPAAGRGLFRTPQTNRTATGFGRGQVNHVRAEEAQEDQGVLMG 368
>gb|AAX96504.1| retrotransposon protein, putative, Ty3-gypsy sub-class [Oryza
sativa (japonica cultivar-group)]
Length = 1506
Score = 110 bits (276), Expect = 7e-23
Identities = 102/393 (25%), Positives = 156/393 (38%), Gaps = 28/393 (7%)
Query: 20 AAREEAEAQRAATAALVAAQNHAEE----NARRVQREEREQAAAQTRGLNDFKRQDPPKL 75
AA E + A L+A QN E N+ + +QA L D +R PP
Sbjct: 38 AATAEQHDDEPSLAQLLANQNRLFERMVANSENMGAAMAQQANQAPSKLADVQRTHPPHF 97
Query: 76 SGGFDPEEADLWLQELEKIFTFLRTTAEMKVDYATYLLTGEAEYWWRGARAMMEADHQAI 135
S DP AD WL+++E R K +A Y L G A WW + ++ D + I
Sbjct: 98 SSAADPLAADDWLRDIEIKLNLCRCDPVEKATFAAYYLQGAAAAWWETYKTLIPPD-EPI 156
Query: 136 TWECFRGAFLDKYFPNSARAAKEAQFLRLRQGGMTVAEYASKLESLAKHFRYFRGQID-E 194
TW FR F + P K+ +FL L+QG M E+ + L RY ++ E
Sbjct: 157 TWTVFREGFRSAHIPAGLMEIKKKEFLNLKQGNMPFMEFMERFNYLG---RYAASDLNTE 213
Query: 195 GYMCERFIDGLSYELQRAVQPLGLNRYQVLVEKTKGIEAIDNARGKFQSQNKPNQGNGGS 254
E D L+ EL+ A+ + + LV+K +E+ + + + + + GS
Sbjct: 214 TKKVELCRDRLAPELKHALAAHEITSMKTLVDKALRVESSEKEVVEDRKRKWAAKKFAGS 273
Query: 255 AMTNQGRNDKGRHYQKKPYVRPQGQGTASGSFYPTGGNAIAPR--PLAVSLDG------- 305
+ + + R P VRP + P R P AV G
Sbjct: 274 SSSTRPR------LAPSPAVRPMAPQPPRQMYVPPRPQTQLVRQVPRAVQAAGDASRNAN 327
Query: 306 VTCFKCNQKGHYASHCP---EGPLMCWNCNKPGHLARDCRIPKVEDAANVAGARRPTAG- 361
VTC+ C +KGHY+ CP G ++ P ++ + A PT G
Sbjct: 328 VTCYNCGKKGHYSPSCPYPKTGKSGPYSQGAPQQPRGPPQVQPGQRGAPAVPKPAPTFGR 387
Query: 362 GRVYFISGTEVDEDEGLIHGNREIPGNSLIVLF 394
GR+ ++ E + G++ G + L VLF
Sbjct: 388 GRLNHVTAEEATDAPGVVLGTFLVHSIPLTVLF 420
>ref|XP_474958.1| OSJNBa0036B17.3 [Oryza sativa (japonica cultivar-group)]
gi|38344527|emb|CAE05409.2| OSJNBa0036B17.3 [Oryza
sativa (japonica cultivar-group)]
Length = 2001
Score = 110 bits (275), Expect = 9e-23
Identities = 95/359 (26%), Positives = 150/359 (41%), Gaps = 38/359 (10%)
Query: 54 REQAAAQTR--GLNDFKRQDPPKLSGGFDPEEADLWLQELEKIFTFLRTTAEMKVDYATY 111
R Q A++TR L DF R PP S +P EA WL +EK ++ T + KV +A++
Sbjct: 228 RLQLASKTRVNKLADFLRVRPPTFSSTTNPVEAGDWLHAIEKKLDLIQCTKQEKVSFASH 287
Query: 112 LLTGEAEYWWRGARAMMEADHQAITWECFRGAFLDKYFPNSARAAKEAQFLRLRQGGMTV 171
L G A WW R A + ITW F AF + P+ A K+ +F L QG +V
Sbjct: 288 QLHGPAAEWWDHFR-QNRAVGELITWREFTAAFKKTHIPSGVVALKKREFRALNQGSRSV 346
Query: 172 AEYASKLESLAKHFRYFRGQIDEGYMCERFIDGLSYELQRAVQPLGLNRYQVLVEKTKGI 231
EY LA++ +E E+F++GL+ EL A+ +Q LV+K
Sbjct: 347 IEYLHDFNLLARYAPEDVRTDEERQ--EKFLEGLNDELSYALMATDYRDFQQLVDKA--- 401
Query: 232 EAIDNARGKFQSQNKPNQGNGGSAMTNQGRNDKGRHYQKKPYVRPQGQGTASGSFYPTGG 291
+ ++K N+ Q + +G + + + PQ + YP GG
Sbjct: 402 ---------IRQEDKYNRMEQKKRRAAQFKAQQGSSQRPRIVLGPQ------AAPYPQGG 446
Query: 292 NAIAPRPLAVSLDGVTCFKCNQKGHYASHCPEGPL--------------MCWNCNKPGHL 337
++ RP + T + N + + P +C+NC PGH
Sbjct: 447 SSSVARPQRQFYNNNTGNRSNDNRNVVTRPVAAPTQNQPVRKEQGSKPGVCFNCGDPGHY 506
Query: 338 ARDCRIP-KVEDAANVAGARRPTAGGRVYFISGTEVDEDEGLIHGNREIPGNSLIVLFK 395
A C P +V++A + P RV ++ E ++ EIP S ++L +
Sbjct: 507 ADKCPKPRRVKNAPVQNSSNAPAPKARVNHVAAAEAQNAPDVVLEIEEIPFPSSLILLE 565
>gb|AAU44115.1| putative polyprotein [Oryza sativa (japonica cultivar-group)]
Length = 1717
Score = 110 bits (275), Expect = 9e-23
Identities = 96/369 (26%), Positives = 153/369 (41%), Gaps = 44/369 (11%)
Query: 49 VQREEREQAAAQTRG--------LNDFKRQDPPKLSGGFDPEEADLWLQELEKIFTFLRT 100
VQ+ + +QA Q + L DF R PP S +P EA WL +EK ++
Sbjct: 300 VQQAQNQQANNQNQNPPPPPQNKLADFLRVRPPTFSSTTNPVEAGDWLHAVEKKLDLIQC 359
Query: 101 TAEMKVDYATYLLTGEAEYWWRGARAMMEADHQAITWECFRGAFLDKYFPNSARAAKEAQ 160
T + KV +A++ L G A WW R A+ + ITW+ F AF + P+ A K+ +
Sbjct: 360 TEQEKVSFASHQLHGPAAEWWDHFR-QGRAEGEPITWQEFTAAFRKTHIPSGVVALKKRE 418
Query: 161 FLRLRQGGMTVAEYASKLESLAKHFRYFRGQIDEGYMCERFIDGLSYELQRAVQPLGLNR 220
F L QG +V EY LA++ +E E+F++GL+ EL A+
Sbjct: 419 FRALNQGSRSVTEYLHDFNRLARYAPEDVRTDEERQ--EKFLEGLNDELSYALMSTDFRD 476
Query: 221 YQVLVEKTKGIEAIDNARGKFQSQNKPNQGNGGSAMTNQGRNDKGRHYQKKPYVRPQGQG 280
+Q LV+K + ++K N+ Q + +G + + + PQ
Sbjct: 477 FQQLVDKA------------IRQEDKYNRMEQKKRRAAQFKAQQGSNQRPRLVTGPQVPS 524
Query: 281 TASGSFYPTGGNAIAPRPLAVSLDGVTCFKCNQKGHY--------ASHCP------EGPL 326
YP GG++ RP + T + N + A + P P+
Sbjct: 525 ------YPQGGSSSVVRPQRQFYNNNTSNRGNDNRNVVARPAATSAQNQPVRKEQGSKPV 578
Query: 327 MCWNCNKPGHLARDCRIP-KVEDAANVAGARRPTAGGRVYFISGTEVDEDEGLIHGNREI 385
+C+NC PGH A C P +V++A + P RV ++ E ++ G +
Sbjct: 579 ICFNCGDPGHYADKCPKPRRVKNAPAPNNSNVPAPKARVNHVAAAEAQNAPDVVLGTFPV 638
Query: 386 PGNSLIVLF 394
VLF
Sbjct: 639 NSIPATVLF 647
>gb|AAT81704.1| putative retrotransposon protein [Oryza sativa (japonica
cultivar-group)]
Length = 626
Score = 110 bits (274), Expect = 1e-22
Identities = 90/320 (28%), Positives = 141/320 (43%), Gaps = 24/320 (7%)
Query: 12 MAQQVTNSAAREEAEAQRAATAALVAAQNHAEENARRVQREEREQAAAQTRGLNDFKRQD 71
MA + S + EE + T A V A + +Q Q +F R
Sbjct: 1 MASRHRASTSNEETQTPDLNTLAGVMATQ-----TQLLQAIANNQGNRGGSSFGEFMRTK 55
Query: 72 PPKLSGGFDPEEADLWLQELEKIFTFLRTTAEMKVDYATYLLTGEAEYWWRGARAMMEAD 131
PP + +P +A WL+ +EK T +R KV +A L G A WW + E D
Sbjct: 56 PPTFATAEEPMDAKDWLRIIEKKLTLVRVREADKVIFAVNQLEGPAGDWWDTYKEAREED 115
Query: 132 HQAITWECFRGAFLDKYFPNSARAAKEAQFLRLRQGGMTVAEYASKLESLAKHFRYFRGQ 191
+WE F AF D + P + K+ +F R+RQG T+ EY ++ LA RY G
Sbjct: 116 AGEPSWEEFTTAFRDNFMPAAVMRMKKNEFRRVRQGNTTIQEYLNRFTQLA---RYATGD 172
Query: 192 I-DEGYMCERFIDGLSYELQRAVQPLGLNRYQVLVEKTKGIE----AIDNARGKFQSQNK 246
+ DE ++FI+GL+ EL+ + + +Q L+ K +E +++ R + + N+
Sbjct: 173 LADEEEKIDKFIEGLNDELRGPMIGQDHDSFQSLINKVVRLENDRKVVEHNRKRRLAMNR 232
Query: 247 PNQGNGGSAMTNQGRNDKGRHYQKKPYVRPQGQGTASGSFY---PTGGNAIAPRPLAV-S 302
P Q + +G G +P V + TA +F+ T A P A S
Sbjct: 233 PPQ---VAPQCPKGTTSSG----WRPTVVTTNRPTAPSNFHRLVTTQTQAPTPNQAATGS 285
Query: 303 LDGVTCFKCNQKGHYASHCP 322
+ +CF C + GH+A+ CP
Sbjct: 286 VRPGSCFNCGEYGHFANKCP 305
Score = 79.7 bits (195), Expect = 2e-13
Identities = 86/285 (30%), Positives = 116/285 (40%), Gaps = 52/285 (18%)
Query: 83 EADLWLQELEKIFTFLRTTAEMKVDYATYLLTGEAEYWWRGARAMMEADHQAITWECFRG 142
EA WL +EK+ L+ T + KV +A++ L G A WW R M A+ Q ITWE F
Sbjct: 333 EAGDWLHVVEKL-ELLQCTDQEKVVFASHQLQGPASEWWDHFR-MNRAEGQPITWEEFTK 390
Query: 143 AFLDKYFPNSARAAKEAQFLRLRQGGMTVAEYASKLESLAKHFRYFRGQIDEGYMCERFI 202
F + P A K+ +F L+Q TVAEY + LA++ +E E+F+
Sbjct: 391 GFNKTHIPAGVVALKKREFRTLKQKDRTVAEYLHEFNRLARYAPEDVRTDEERQ--EKFL 448
Query: 203 DGLSYELQRAVQPLGLNRYQVLVEKTKGIE----AIDN----------ARGKFQSQN-KP 247
+GL EL + +Q LV+K +E IDN A+G Q Q KP
Sbjct: 449 EGLKDELSVTLISHDYVDFQQLVDKAIRLEDKKNRIDNRKRKMTVFQEAQGSSQRQRIKP 508
Query: 248 NQ-------GNGGSAMTNQGRNDKGRHYQKKPYVRPQGQGTASGSFYPTGGNAIAPRPLA 300
Q G G S N G K + Q A +P+
Sbjct: 509 LQIGEPSSAGQGQSQQLNIGGEIKSETNESNKVNIEQ-----------------ANQPVL 551
Query: 301 VSLDGVTCFKCNQKGHYASHCPEGPLMCWNCNKPGHLARDCRIPK 345
V D + N G C +NC KPGH AR+C PK
Sbjct: 552 VQQD--QSQENNSSGREQQVC-------FNCYKPGHFARECPKPK 587
>ref|NP_914274.1| putative polyprotein [Oryza sativa (japonica cultivar-group)]
Length = 1572
Score = 109 bits (273), Expect = 1e-22
Identities = 96/392 (24%), Positives = 160/392 (40%), Gaps = 32/392 (8%)
Query: 24 EAEAQRAATAALVAAQNHAEENARRVQREEREQAAAQTRGLNDFKRQDPPKLSGGFDPEE 83
+ + + T A+ + Q++A N R + L DF R PP+ S +P E
Sbjct: 106 QTQILQGLTTAIASFQHNAHGNGHPHMGNNRSK-------LTDFLRSRPPEFSQTVEPVE 158
Query: 84 ADLWLQELEKIFTFLRTTAEMKVDYATYLLTGEAEYWWRGARAMMEADHQAITWECFRGA 143
AD WL+++++ ++ T K+ YA++ L G A WW + I W+ F A
Sbjct: 159 ADDWLKDVDRKLNLVQCTPVEKMLYASHQLRGPAADWWEN-YCNAHPEPTNIAWDEFATA 217
Query: 144 FLDKYFPNSARAAKEAQFLRLRQGGMTVAEYASKLESLAKHFRYFRGQID-EGYMCERFI 202
F + P S K+ +F RL+QG ++ EY S+ LA RY ++D + +F+
Sbjct: 218 FRAAHVPESTIDMKKEEFNRLKQGNSSINEYLSQFNKLA---RYAPEEVDTDKKKIRKFL 274
Query: 203 DGLSYELQRAVQPLGLNRYQVLVEKTKGIE-AIDNARGKFQSQNKPNQGN---------- 251
G++ ++ + +Q ++ K +E A A +++ + +QGN
Sbjct: 275 KGIAVGMRLQLLAHDFPTFQHMINKALLLEDARKEATEEYKKRKSNHQGNSFRGAPRPRY 334
Query: 252 GGSAMTNQGRNDKGRH--YQKKPYV-RPQGQGTASGSFYPTGGNAIAPRPLAVSLDGVTC 308
G +Q R Y +P + RP Q T N++ V C
Sbjct: 335 GQPMQYHQSVTQANRQPGYAPRPQINRPAPQPQQRAPSGNTAPNSVISFKSPQGPSAVQC 394
Query: 309 FKCNQKGHYASHCPEGPLMCWNCNKPGHLARD------CRIPKVEDAANVAGARRPTAGG 362
F+CNQ GHYA CP+ P + + G AR P + + + A G
Sbjct: 395 FRCNQMGHYARQCPQNPTNTNSGHANGSTARTPTPAAAQSRPSSQASGQGSRASNNFGRG 454
Query: 363 RVYFISGTEVDEDEGLIHGNREIPGNSLIVLF 394
RV I + ++ G + IVLF
Sbjct: 455 RVNHIQAETAQDAPDVVMGMFSVNSVPAIVLF 486
>gb|AAV31373.1| putative polyprotein [Oryza sativa (japonica cultivar-group)]
Length = 2408
Score = 109 bits (272), Expect = 2e-22
Identities = 95/369 (25%), Positives = 149/369 (39%), Gaps = 44/369 (11%)
Query: 49 VQREEREQAAAQTRG--------LNDFKRQDPPKLSGGFDPEEADLWLQELEKIFTFLRT 100
VQ+ + +Q Q + L DF R PP S +P EA WL +EK ++
Sbjct: 40 VQQAQNQQGNNQNQNPPPPPQNKLADFLRVRPPTFSSTTNPVEAGDWLHAVEKKLDLIQC 99
Query: 101 TAEMKVDYATYLLTGEAEYWWRGARAMMEADHQAITWECFRGAFLDKYFPNSARAAKEAQ 160
T + KV +A++ L G A WW R A+ + ITW+ F AF + P A K+ +
Sbjct: 100 TEQEKVSFASHQLHGPAAEWWDHFR-QGRAEGEPITWQEFTAAFKKTHIPTGVVALKKRE 158
Query: 161 FLRLRQGGMTVAEYASKLESLAKHFRYFRGQIDEGYMCERFIDGLSYELQRAVQPLGLNR 220
F L QG +V EY LA H+ + DE E+F++GL+ EL A+
Sbjct: 159 FRALNQGSRSVTEYLHDFNRLA-HYAPEDVRTDEERQ-EKFLEGLNDELSYALMSTDFRD 216
Query: 221 YQVLVEKTKGIEAIDNARGKFQSQNKPNQGNGGSAMTNQGRNDKGRHYQKKPYVRPQGQG 280
+Q LV+K + ++K N+ Q + +G + + + PQ
Sbjct: 217 FQQLVDKA------------IRQEDKYNRMEQKKRRAAQFKAQQGSNQRPRLITGPQDPS 264
Query: 281 TASGSFYPTGGNAIAPRPLAVSLDGVTCFKCNQKGHYASHCPEGPL-------------- 326
YP GG++ RP + T + N + + P
Sbjct: 265 ------YPQGGSSSVVRPQRQFYNNNTGNRGNDNRNMVARPAATPAQNQPVRKEQGSKPG 318
Query: 327 MCWNCNKPGHLARDCRIP-KVEDAANVAGARRPTAGGRVYFISGTEVDEDEGLIHGNREI 385
+C+NC PGH A C P +V++A + P RV ++ E ++ G +
Sbjct: 319 VCFNCGDPGHYADKCPKPRRVKNAPAPNNSNAPAPKARVNHVAAAEAQNAPDVVLGTFPV 378
Query: 386 PGNSLIVLF 394
VLF
Sbjct: 379 NSIPASVLF 387
>emb|CAE03019.3| OSJNBa0091D06.9 [Oryza sativa (japonica cultivar-group)]
gi|50926829|ref|XP_473331.1| OSJNBa0091D06.9 [Oryza
sativa (japonica cultivar-group)]
Length = 1762
Score = 108 bits (270), Expect = 3e-22
Identities = 85/331 (25%), Positives = 141/331 (41%), Gaps = 26/331 (7%)
Query: 24 EAEAQRAATAALVAAQNHAEENARRVQREEREQAAAQTRGLNDFKRQDPPKLSGGFDPEE 83
+ + + T A+ + Q++A N R + L DF R PP+ S +P E
Sbjct: 386 QTQILQGLTTAIASFQHNAHGNGHPHMGNNRSK-------LTDFLRSRPPEFSQTVEPVE 438
Query: 84 ADLWLQELEKIFTFLRTTAEMKVDYATYLLTGEAEYWWRGARAMMEADHQAITWECFRGA 143
AD WL+++++ ++ T K YA++ L G A WW + I W+ F A
Sbjct: 439 ADDWLKDVDRKLNLVQCTPVEKTLYASHQLRGPAADWWEN-YCNAHPEPTNIAWDEFATA 497
Query: 144 FLDKYFPNSARAAKEAQFLRLRQGGMTVAEYASKLESLAKHFRYFRGQID-EGYMCERFI 202
F + P S K+ +F RL+QG ++ EY S+ LA RY ++D + +F+
Sbjct: 498 FRAAHVPESTIDMKKEEFNRLKQGNSSINEYLSQFNKLA---RYAPEEVDTDKKKIRKFL 554
Query: 203 DGLSYELQRAVQPLGLNRYQVLVEKTKGIE-AIDNARGKFQSQNKPNQGN---------- 251
G++ ++ + +Q ++ K +E A A +++ + +QGN
Sbjct: 555 KGIAVGMRLQLLAHDFPTFQHMINKALLLEDARKEATEEYKKRKSNHQGNSSRGAPRPRY 614
Query: 252 GGSAMTNQGRNDKGRH--YQKKPYV-RPQGQGTASGSFYPTGGNAIAPRPLAVSLDGVTC 308
G +Q R Y +P + RP Q T N++ V C
Sbjct: 615 GQPMQYHQSVTQANRQPGYAPRPQINRPAPQPQQRAPSGNTAPNSVTSFKSPQGPSAVQC 674
Query: 309 FKCNQKGHYASHCPEGPLMCWNCNKPGHLAR 339
F+CNQ GHYA CP+ P + + G AR
Sbjct: 675 FRCNQMGHYARQCPQNPTNTNSGHANGSTAR 705
>gb|AAP52698.1| putative polyprotein [Oryza sativa (japonica cultivar-group)]
gi|37532218|ref|NP_920411.1| putative polyprotein [Oryza
sativa (japonica cultivar-group)]
gi|19225021|gb|AAL86497.1| putative polyprotein [Oryza
sativa (japonica cultivar-group)]
Length = 1722
Score = 108 bits (269), Expect = 4e-22
Identities = 106/375 (28%), Positives = 155/375 (41%), Gaps = 31/375 (8%)
Query: 32 TAALVAAQ-----NHAEENARRVQREEREQAAAQTRGLNDFKRQDPPKLSGGFDPEEADL 86
T A V AQ N + + Q + A Q + L +F R PP S +P EA
Sbjct: 273 TLAQVLAQQTQLMNMMMQQLQNQQNQGNNHAPPQNK-LAEFLRVRPPTFSSTTNPVEAGD 331
Query: 87 WLQELEKIFTFLRTTAEMKVDYATYLLTGEAEYWWRGARAMMEADHQAITWECFRGAFLD 146
WL +EK L+ T + KV +A++ L G A WW R + + ITW F AF
Sbjct: 332 WLHAIEKKLDLLQCTDQEKVSFASHQLHGPASEWWDHFR-LNRTTAEPITWLEFTAAFRK 390
Query: 147 KYFPNSARAAKEAQFLRLRQGGMTVAEYASKLESLAKHFRYFRGQIDEGYMCERFIDGLS 206
+ P+ + K+ +F L QG +V EY + LA + +E E+F++GL+
Sbjct: 391 THIPSGVVSLKKKEFRSLTQGSRSVTEYLHEFNRLACYAPEDVRNDEERQ--EKFLEGLN 448
Query: 207 YELQRAVQPLGLNRYQVLVEKTKGIEAIDNA---RGKFQSQNKPNQGNGGSAMTNQGRND 263
EL + + +Q LV+K E N + + +Q K QGN G
Sbjct: 449 DELSYPLMTGDYSDFQKLVDKAIRQEDKYNRMEQKKRRMAQFKTQQGNNQRPRLTLGPQS 508
Query: 264 KGRHYQKKPYVRPQGQGTASGSFYPTGGNAI---APRPLAVSLDGVTCFKCNQKGHYASH 320
H VRPQ Q F GN I APRP+AV Q+
Sbjct: 509 MP-HGGSSSVVRPQRQ-----FFNNNAGNNIRNQAPRPVAVP---------TQQQPAKRE 553
Query: 321 CPEGPLMCWNCNKPGHLARDCRIP-KVEDAANVAGARRPTAGGRVYFISGTEVDEDEGLI 379
P++C+NC PGH A C P +V+ + + P + RV ++ E + +I
Sbjct: 554 QGSKPVVCFNCGDPGHYADKCPKPRRVKVVPAQSNSAVPASKARVNHVAAAEAQDAPDVI 613
Query: 380 HGNREIPGNSLIVLF 394
G + VLF
Sbjct: 614 LGTFLVNSVPTTVLF 628
Database: nr
Posted date: Jul 5, 2005 12:34 AM
Number of letters in database: 863,360,394
Number of sequences in database: 2,540,612
Lambda K H
0.320 0.135 0.411
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 738,418,261
Number of Sequences: 2540612
Number of extensions: 33067889
Number of successful extensions: 132525
Number of sequences better than 10.0: 4817
Number of HSP's better than 10.0 without gapping: 3169
Number of HSP's successfully gapped in prelim test: 1656
Number of HSP's that attempted gapping in prelim test: 116509
Number of HSP's gapped (non-prelim): 10763
length of query: 433
length of database: 863,360,394
effective HSP length: 131
effective length of query: 302
effective length of database: 530,540,222
effective search space: 160223147044
effective search space used: 160223147044
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 77 (34.3 bits)
Lotus: description of TM0178.13