BLAST2 result
BLASTP 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TM0177.9
(113 letters)
Database: nr
2,540,612 sequences; 863,360,394 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
dbj|BAB33196.1| RNA polymerase beta' subunit-2 [Lotus corniculat... 210 8e-54
emb|CAA27545.1| unnamed protein product [Pisum sativum] gi|81957... 201 3e-51
emb|CAJ00748.1| RNA polymerase beta'' chain [Cucumis sativus] 198 2e-50
gb|AAL07336.1| rpoC2 [Glycine max] gi|41018056|sp|Q8HVY3|RPOC2_S... 198 3e-50
emb|CAD28711.1| RNA polymerase beta' subunit-2 [Calycanthus flor... 198 3e-50
emb|CAC88034.1| RNA polymerase beta II subunit [Atropa belladonn... 196 1e-49
emb|CAA77410.1| RNA polymerase beta'' subunit [Nicotiana tabacum... 195 2e-49
emb|CAF28583.1| RNA polymerase beta' subunit-2 [Nymphaea alba] g... 195 2e-49
sp|P38550|RPOC2_TOBAC DNA-directed RNA polymerase beta'' chain (... 195 2e-49
pir||A05028 rpoC protein homolog - common tobacco chloroplast 195 2e-49
dbj|BAD93459.1| RNA polymerase beta chain [Silene latifolia] 195 3e-49
emb|CAB88715.1| RNA polymerase beta'' subunit [Spinacia oleracea... 193 7e-49
dbj|BAA84375.1| RNA polymerase beta' subunit-2 [Arabidopsis thal... 193 7e-49
gb|AAV74373.1| RpoC2 [Acorus gramineus] 193 1e-48
emb|CAB67153.1| RNA polymerase beta'' subunit [Oenothera elata s... 192 1e-48
emb|CAB48415.2| RNA polymerase A beta prime prime subunit [Sinap... 191 3e-48
ref|YP_086956.1| RNA polymerase beta II subunit [Panax ginseng] ... 191 5e-48
emb|CAA33988.1| RNA polymerase beta' subunit-2 [Oryza sativa (ja... 190 8e-48
ref|YP_052741.1| RNA polymerase beta' subunit-2 [Oryza nivara] g... 190 8e-48
ref|NP_114251.1| RNA polymerase beta'' chain [Triticum aestivum]... 190 8e-48
>dbj|BAB33196.1| RNA polymerase beta' subunit-2 [Lotus corniculatus var. japonicus]
gi|13518438|ref|NP_084798.1| RNA polymerase beta'' chain
[Lotus corniculatus var. japonicus]
gi|23822109|sp|Q9BBS7|RPOC2_LOTJA DNA-directed RNA
polymerase beta'' chain (PEP) (Plastid-encoded RNA
polymerase beta'' subunit) (RNA polymerase beta''
subunit)
Length = 1332
Score = 210 bits (534), Expect = 8e-54
Identities = 110/113 (97%), Positives = 112/113 (98%)
Query: 1 AQSRISLVNKIQRVYRSQGVHIHNRHIEIIVRQITSKVLVSEDGMSNVFSLGELIGLLRA 60
AQSRISLVNKIQRVYRSQGVHIHNRHIEIIVRQITSKVLVSEDGMSNVFS GELIGLLRA
Sbjct: 1172 AQSRISLVNKIQRVYRSQGVHIHNRHIEIIVRQITSKVLVSEDGMSNVFSPGELIGLLRA 1231
Query: 61 QRTGRALEESICYRTILLGITKTSMNTQSFISEASFQETARVLAKAALRGRID 113
QRTGRALEESICYRT+LLGITKTS+NTQSFISEASFQETARVLAKAALRGRID
Sbjct: 1232 QRTGRALEESICYRTLLLGITKTSLNTQSFISEASFQETARVLAKAALRGRID 1284
>emb|CAA27545.1| unnamed protein product [Pisum sativum] gi|81957|pir||S07137
DNA-directed RNA polymerase (EC 2.7.7.6) beta'-2 chain -
garden pea chloroplast (fragment)
gi|133447|sp|P12227|RPOC2_PEA DNA-directed RNA polymerase
beta'' chain (PEP) (Plastid-encoded RNA polymerase beta''
subunit) (RNA polymerase beta'' subunit)
Length = 1163
Score = 201 bits (512), Expect = 3e-51
Identities = 103/113 (91%), Positives = 110/113 (97%)
Query: 1 AQSRISLVNKIQRVYRSQGVHIHNRHIEIIVRQITSKVLVSEDGMSNVFSLGELIGLLRA 60
AQSRISLVNKIQ+VYRSQGVHIHNRHIEIIVRQITSKVLVSEDGMSN+F GELIGLLRA
Sbjct: 984 AQSRISLVNKIQKVYRSQGVHIHNRHIEIIVRQITSKVLVSEDGMSNIFLPGELIGLLRA 1043
Query: 61 QRTGRALEESICYRTILLGITKTSMNTQSFISEASFQETARVLAKAALRGRID 113
+RTGRALEE+ICYR +LLG+TKTS+NTQSFISEASFQETARVLAKAALRGRID
Sbjct: 1044 ERTGRALEEAICYRALLLGVTKTSLNTQSFISEASFQETARVLAKAALRGRID 1096
>emb|CAJ00748.1| RNA polymerase beta'' chain [Cucumis sativus]
Length = 1394
Score = 198 bits (504), Expect = 2e-50
Identities = 103/112 (91%), Positives = 108/112 (95%)
Query: 2 QSRISLVNKIQRVYRSQGVHIHNRHIEIIVRQITSKVLVSEDGMSNVFSLGELIGLLRAQ 61
QSRISLVNKIQ+VYRSQGV IHNRHIEIIVRQITSKVLVSEDGMSNVFS GELIGLLRA+
Sbjct: 1202 QSRISLVNKIQKVYRSQGVEIHNRHIEIIVRQITSKVLVSEDGMSNVFSPGELIGLLRAE 1261
Query: 62 RTGRALEESICYRTILLGITKTSMNTQSFISEASFQETARVLAKAALRGRID 113
RTGRALEE+ICYR +LLGITK S+NTQSFISEASFQETARVLAKAALRGRID
Sbjct: 1262 RTGRALEEAICYRAVLLGITKASLNTQSFISEASFQETARVLAKAALRGRID 1313
>gb|AAL07336.1| rpoC2 [Glycine max] gi|41018056|sp|Q8HVY3|RPOC2_SOYBN DNA-directed
RNA polymerase beta'' chain (PEP) (Plastid-encoded RNA
polymerase beta'' subunit) (RNA polymerase beta''
subunit)
Length = 1384
Score = 198 bits (503), Expect = 3e-50
Identities = 102/113 (90%), Positives = 109/113 (96%)
Query: 1 AQSRISLVNKIQRVYRSQGVHIHNRHIEIIVRQITSKVLVSEDGMSNVFSLGELIGLLRA 60
AQSRISLVNKIQ+VYRSQGVHIHNRHIEIIVRQITSKVLVSEDGMSNVF GELIGLLRA
Sbjct: 1200 AQSRISLVNKIQKVYRSQGVHIHNRHIEIIVRQITSKVLVSEDGMSNVFLPGELIGLLRA 1259
Query: 61 QRTGRALEESICYRTILLGITKTSMNTQSFISEASFQETARVLAKAALRGRID 113
+R GR+LEE+ICYR +LLGITKTS+NTQSFISEASFQETARVL+KAALRGRID
Sbjct: 1260 ERAGRSLEEAICYRVLLLGITKTSLNTQSFISEASFQETARVLSKAALRGRID 1312
>emb|CAD28711.1| RNA polymerase beta' subunit-2 [Calycanthus floridus var. glaucus]
gi|32480833|ref|NP_862744.1| RNA polymerase beta'' chain
[Calycanthus floridus var. glaucus]
gi|41017946|sp|Q7YJY0|RPOC2_CALFE DNA-directed RNA
polymerase beta'' chain (PEP) (Plastid-encoded RNA
polymerase beta'' subunit) (RNA polymerase beta''
subunit)
Length = 1377
Score = 198 bits (503), Expect = 3e-50
Identities = 103/113 (91%), Positives = 109/113 (96%)
Query: 1 AQSRISLVNKIQRVYRSQGVHIHNRHIEIIVRQITSKVLVSEDGMSNVFSLGELIGLLRA 60
AQSRISLVNKIQ+VYRSQGV IHNRHIEIIVRQITS+VLVSEDGMSNVFS GELIGLLRA
Sbjct: 1193 AQSRISLVNKIQKVYRSQGVQIHNRHIEIIVRQITSRVLVSEDGMSNVFSPGELIGLLRA 1252
Query: 61 QRTGRALEESICYRTILLGITKTSMNTQSFISEASFQETARVLAKAALRGRID 113
+RTGRALEE+ICYR ILLGIT+ S+NTQSFISEASFQETARVLAKAALRGRID
Sbjct: 1253 ERTGRALEEAICYRAILLGITRASLNTQSFISEASFQETARVLAKAALRGRID 1305
>emb|CAC88034.1| RNA polymerase beta II subunit [Atropa belladonna]
gi|28261707|ref|NP_783222.1| RNA polymerase beta'' chain
[Atropa belladonna] gi|41018087|sp|Q8S8Y1|RPOC2_ATRBE
DNA-directed RNA polymerase beta'' chain (PEP)
(Plastid-encoded RNA polymerase beta'' subunit) (RNA
polymerase beta'' subunit)
Length = 1389
Score = 196 bits (498), Expect = 1e-49
Identities = 102/113 (90%), Positives = 108/113 (95%)
Query: 1 AQSRISLVNKIQRVYRSQGVHIHNRHIEIIVRQITSKVLVSEDGMSNVFSLGELIGLLRA 60
AQSRISLVNKIQ+VYRSQGV IHNRHIEIIVRQITSKVLVSEDGMSNVFS GELIGLLRA
Sbjct: 1196 AQSRISLVNKIQQVYRSQGVQIHNRHIEIIVRQITSKVLVSEDGMSNVFSPGELIGLLRA 1255
Query: 61 QRTGRALEESICYRTILLGITKTSMNTQSFISEASFQETARVLAKAALRGRID 113
+R GRALEE+ICYR +LLGIT+ S+NTQSFISEASFQETARVLAKAALRGRID
Sbjct: 1256 ERMGRALEEAICYRVVLLGITRASLNTQSFISEASFQETARVLAKAALRGRID 1308
>emb|CAA77410.1| RNA polymerase beta'' subunit [Nicotiana tabacum]
gi|11465944|ref|NP_054486.1| RNA polymerase beta'' chain
[Nicotiana tabacum]
Length = 1392
Score = 195 bits (496), Expect = 2e-49
Identities = 101/113 (89%), Positives = 108/113 (95%)
Query: 1 AQSRISLVNKIQRVYRSQGVHIHNRHIEIIVRQITSKVLVSEDGMSNVFSLGELIGLLRA 60
AQSRISLVNKIQ+VYRSQGV IHNRH+EIIVRQITSKVLVSEDGMSNVFS GELIGLLRA
Sbjct: 1199 AQSRISLVNKIQQVYRSQGVQIHNRHLEIIVRQITSKVLVSEDGMSNVFSPGELIGLLRA 1258
Query: 61 QRTGRALEESICYRTILLGITKTSMNTQSFISEASFQETARVLAKAALRGRID 113
+R GRALEE+ICYR +LLGIT+ S+NTQSFISEASFQETARVLAKAALRGRID
Sbjct: 1259 ERMGRALEEAICYRVVLLGITRASLNTQSFISEASFQETARVLAKAALRGRID 1311
>emb|CAF28583.1| RNA polymerase beta' subunit-2 [Nymphaea alba]
gi|50346772|ref|YP_053145.1| RNA polymerase beta'
subunit-2 [Nymphaea alba]
Length = 1401
Score = 195 bits (496), Expect = 2e-49
Identities = 100/113 (88%), Positives = 108/113 (95%)
Query: 1 AQSRISLVNKIQRVYRSQGVHIHNRHIEIIVRQITSKVLVSEDGMSNVFSLGELIGLLRA 60
AQSR+SLVNKIQ+VYRSQGV IHN+HIEIIVRQITSKVLVSEDGMSNVFS GELIGLLRA
Sbjct: 1195 AQSRVSLVNKIQKVYRSQGVQIHNKHIEIIVRQITSKVLVSEDGMSNVFSPGELIGLLRA 1254
Query: 61 QRTGRALEESICYRTILLGITKTSMNTQSFISEASFQETARVLAKAALRGRID 113
+R GRALEE+ICYR +LLGIT+ S+NTQSFISEASFQETARVLAKAALRGRID
Sbjct: 1255 ERAGRALEEAICYRAVLLGITRASLNTQSFISEASFQETARVLAKAALRGRID 1307
>sp|P38550|RPOC2_TOBAC DNA-directed RNA polymerase beta'' chain (PEP) (Plastid-encoded RNA
polymerase beta'' subunit) (RNA polymerase beta''
subunit)
Length = 1388
Score = 195 bits (496), Expect = 2e-49
Identities = 101/113 (89%), Positives = 108/113 (95%)
Query: 1 AQSRISLVNKIQRVYRSQGVHIHNRHIEIIVRQITSKVLVSEDGMSNVFSLGELIGLLRA 60
AQSRISLVNKIQ+VYRSQGV IHNRH+EIIVRQITSKVLVSEDGMSNVFS GELIGLLRA
Sbjct: 1195 AQSRISLVNKIQQVYRSQGVQIHNRHLEIIVRQITSKVLVSEDGMSNVFSPGELIGLLRA 1254
Query: 61 QRTGRALEESICYRTILLGITKTSMNTQSFISEASFQETARVLAKAALRGRID 113
+R GRALEE+ICYR +LLGIT+ S+NTQSFISEASFQETARVLAKAALRGRID
Sbjct: 1255 ERMGRALEEAICYRVVLLGITRASLNTQSFISEASFQETARVLAKAALRGRID 1307
>pir||A05028 rpoC protein homolog - common tobacco chloroplast
Length = 862
Score = 195 bits (496), Expect = 2e-49
Identities = 101/113 (89%), Positives = 108/113 (95%)
Query: 1 AQSRISLVNKIQRVYRSQGVHIHNRHIEIIVRQITSKVLVSEDGMSNVFSLGELIGLLRA 60
AQSRISLVNKIQ+VYRSQGV IHNRH+EIIVRQITSKVLVSEDGMSNVFS GELIGLLRA
Sbjct: 669 AQSRISLVNKIQQVYRSQGVQIHNRHLEIIVRQITSKVLVSEDGMSNVFSPGELIGLLRA 728
Query: 61 QRTGRALEESICYRTILLGITKTSMNTQSFISEASFQETARVLAKAALRGRID 113
+R GRALEE+ICYR +LLGIT+ S+NTQSFISEASFQETARVLAKAALRGRID
Sbjct: 729 ERMGRALEEAICYRVVLLGITRASLNTQSFISEASFQETARVLAKAALRGRID 781
>dbj|BAD93459.1| RNA polymerase beta chain [Silene latifolia]
Length = 1373
Score = 195 bits (495), Expect = 3e-49
Identities = 101/113 (89%), Positives = 108/113 (95%)
Query: 1 AQSRISLVNKIQRVYRSQGVHIHNRHIEIIVRQITSKVLVSEDGMSNVFSLGELIGLLRA 60
AQSRISLVNKIQ+VYRSQGV IH+RHIEIIVRQITSKVLVSEDGMSN+F GELIGL RA
Sbjct: 1185 AQSRISLVNKIQKVYRSQGVQIHDRHIEIIVRQITSKVLVSEDGMSNIFLPGELIGLFRA 1244
Query: 61 QRTGRALEESICYRTILLGITKTSMNTQSFISEASFQETARVLAKAALRGRID 113
+RTGRALEE+ICYRTILLGIT+ S+NTQSFISEASFQETARVLAKAALRGRID
Sbjct: 1245 ERTGRALEEAICYRTILLGITRASLNTQSFISEASFQETARVLAKAALRGRID 1297
>emb|CAB88715.1| RNA polymerase beta'' subunit [Spinacia oleracea]
gi|11497514|ref|NP_054922.1| RNA polymerase beta'' chain
[Spinacia oleracea] gi|81503|pir||A29959 DNA-directed RNA
polymerase (EC 2.7.7.6) beta'' chain - spinach
chloroplast gi|133448|sp|P11704|RPOC2_SPIOL DNA-directed
RNA polymerase beta'' chain (PEP) (Plastid-encoded RNA
polymerase beta'' subunit) (RNA polymerase beta''
subunit)
Length = 1361
Score = 193 bits (491), Expect = 7e-49
Identities = 101/113 (89%), Positives = 106/113 (93%)
Query: 1 AQSRISLVNKIQRVYRSQGVHIHNRHIEIIVRQITSKVLVSEDGMSNVFSLGELIGLLRA 60
AQSRISLVNKIQ+VYRSQGV IHNRHIEIIVRQITSKVLVSEDGMSNVF GELIGL RA
Sbjct: 1183 AQSRISLVNKIQKVYRSQGVQIHNRHIEIIVRQITSKVLVSEDGMSNVFLPGELIGLFRA 1242
Query: 61 QRTGRALEESICYRTILLGITKTSMNTQSFISEASFQETARVLAKAALRGRID 113
+RTGRALEE+ICYR LLGIT+ S+NTQSFISEASFQETARVLAKAALRGRID
Sbjct: 1243 ERTGRALEEAICYRATLLGITRASLNTQSFISEASFQETARVLAKAALRGRID 1295
>dbj|BAA84375.1| RNA polymerase beta' subunit-2 [Arabidopsis thaliana]
gi|7525023|ref|NP_051049.1| RNA polymerase beta'' chain
[Arabidopsis thaliana] gi|6685905|sp|P56764|RPOC2_ARATH
DNA-directed RNA polymerase beta'' chain (PEP)
(Plastid-encoded RNA polymerase beta'' subunit) (RNA
polymerase beta'' subunit)
Length = 1376
Score = 193 bits (491), Expect = 7e-49
Identities = 100/112 (89%), Positives = 107/112 (95%)
Query: 2 QSRISLVNKIQRVYRSQGVHIHNRHIEIIVRQITSKVLVSEDGMSNVFSLGELIGLLRAQ 61
QSRISLVNKIQ+VYRSQGV IHNRHIEIIVRQITSKVLVSE+GMSNVF GELIGLLRA+
Sbjct: 1191 QSRISLVNKIQKVYRSQGVQIHNRHIEIIVRQITSKVLVSEEGMSNVFLPGELIGLLRAE 1250
Query: 62 RTGRALEESICYRTILLGITKTSMNTQSFISEASFQETARVLAKAALRGRID 113
RTGRALEE+ICYR +LLGIT+ S+NTQSFISEASFQETARVLAKAALRGRID
Sbjct: 1251 RTGRALEEAICYRAVLLGITRASLNTQSFISEASFQETARVLAKAALRGRID 1302
>gb|AAV74373.1| RpoC2 [Acorus gramineus]
Length = 602
Score = 193 bits (490), Expect = 1e-48
Identities = 101/113 (89%), Positives = 108/113 (95%)
Query: 1 AQSRISLVNKIQRVYRSQGVHIHNRHIEIIVRQITSKVLVSEDGMSNVFSLGELIGLLRA 60
AQSRISLVNKIQ+VYRSQGV IHN+HIEIIVRQITSKVLVSEDGMSNVFS GELIGLLRA
Sbjct: 408 AQSRISLVNKIQKVYRSQGVQIHNKHIEIIVRQITSKVLVSEDGMSNVFSPGELIGLLRA 467
Query: 61 QRTGRALEESICYRTILLGITKTSMNTQSFISEASFQETARVLAKAALRGRID 113
+RTGRALEE+I YR ILLGIT+ S+NTQSFISEASFQETARVLAKAALRGR+D
Sbjct: 468 ERTGRALEEAIRYRAILLGITRASLNTQSFISEASFQETARVLAKAALRGRVD 520
>emb|CAB67153.1| RNA polymerase beta'' subunit [Oenothera elata subsp. hookeri]
gi|13518329|ref|NP_084688.1| RNA polymerase beta'' chain
[Oenothera elata subsp. hookeri]
gi|32699686|sp|Q9MTM3|RPOC2_OENHO DNA-directed RNA
polymerase beta'' chain (PEP) (Plastid-encoded RNA
polymerase beta'' subunit) (RNA polymerase beta''
subunit)
Length = 1386
Score = 192 bits (489), Expect = 1e-48
Identities = 101/112 (90%), Positives = 106/112 (94%)
Query: 2 QSRISLVNKIQRVYRSQGVHIHNRHIEIIVRQITSKVLVSEDGMSNVFSLGELIGLLRAQ 61
QSRISLVNKIQ+VYRSQGV IHNRHIEIIVRQITSKVLVSEDGMSNVF ELIGLLRA+
Sbjct: 1195 QSRISLVNKIQKVYRSQGVQIHNRHIEIIVRQITSKVLVSEDGMSNVFLPRELIGLLRAE 1254
Query: 62 RTGRALEESICYRTILLGITKTSMNTQSFISEASFQETARVLAKAALRGRID 113
RTGRALEESICY+ LLGIT+TS+NTQSFISEASFQETARVLAKAALRGRID
Sbjct: 1255 RTGRALEESICYKAFLLGITRTSLNTQSFISEASFQETARVLAKAALRGRID 1306
>emb|CAB48415.2| RNA polymerase A beta prime prime subunit [Sinapis alba]
gi|12229937|sp|Q9THV5|RPOC2_SINAL DNA-directed RNA
polymerase beta'' chain (PEP) (Plastid-encoded RNA
polymerase beta'' subunit) (RNA polymerase beta''
subunit)
Length = 1384
Score = 191 bits (486), Expect = 3e-48
Identities = 99/112 (88%), Positives = 107/112 (95%)
Query: 2 QSRISLVNKIQRVYRSQGVHIHNRHIEIIVRQITSKVLVSEDGMSNVFSLGELIGLLRAQ 61
QSRISLVNKI++VYRSQGV IHNRHIEIIVRQITSKVLVSE+GMSNVF GELIGLLRA+
Sbjct: 1199 QSRISLVNKIKQVYRSQGVQIHNRHIEIIVRQITSKVLVSEEGMSNVFLPGELIGLLRAE 1258
Query: 62 RTGRALEESICYRTILLGITKTSMNTQSFISEASFQETARVLAKAALRGRID 113
RTGRALEE+ICYR +LLGIT+ S+NTQSFISEASFQETARVLAKAALRGRID
Sbjct: 1259 RTGRALEEAICYRAVLLGITRASLNTQSFISEASFQETARVLAKAALRGRID 1310
>ref|YP_086956.1| RNA polymerase beta II subunit [Panax ginseng]
gi|51235303|gb|AAT98499.1| RNA polymerase beta II subunit
[Panax ginseng]
Length = 1387
Score = 191 bits (484), Expect = 5e-48
Identities = 99/112 (88%), Positives = 105/112 (93%)
Query: 2 QSRISLVNKIQRVYRSQGVHIHNRHIEIIVRQITSKVLVSEDGMSNVFSLGELIGLLRAQ 61
QSRISLVNKIQ+VYRSQGV IHNRHIEIIVRQITSKVLVSEDGMSNVF GE IGLLRA+
Sbjct: 1195 QSRISLVNKIQKVYRSQGVQIHNRHIEIIVRQITSKVLVSEDGMSNVFLPGEFIGLLRAE 1254
Query: 62 RTGRALEESICYRTILLGITKTSMNTQSFISEASFQETARVLAKAALRGRID 113
R GRALEE+ICY+ +LLGITK S+NTQSFISEASFQETARVLAKAALRGRID
Sbjct: 1255 RMGRALEEAICYQAVLLGITKASLNTQSFISEASFQETARVLAKAALRGRID 1306
>emb|CAA33988.1| RNA polymerase beta' subunit-2 [Oryza sativa (japonica
cultivar-group)] gi|11466779|ref|NP_039375.1| RNA
polymerase beta'' chain [Oryza sativa (japonica
cultivar-group)] gi|66986|pir||RNRZC2 DNA-directed RNA
polymerase (EC 2.7.7.6) beta'-2 chain - rice chloroplast
gi|133446|sp|P12093|RPOC2_ORYSA DNA-directed RNA
polymerase beta'' chain (PEP) (Plastid-encoded RNA
polymerase beta'' subunit) (RNA polymerase beta''
subunit)
Length = 1513
Score = 190 bits (482), Expect = 8e-48
Identities = 99/113 (87%), Positives = 106/113 (93%)
Query: 1 AQSRISLVNKIQRVYRSQGVHIHNRHIEIIVRQITSKVLVSEDGMSNVFSLGELIGLLRA 60
AQSRISLVNKIQ+VYRSQGV IHNRHIEII+RQ+TSKV VSEDGMSNVFS GELIGLLRA
Sbjct: 1320 AQSRISLVNKIQKVYRSQGVQIHNRHIEIIIRQVTSKVRVSEDGMSNVFSPGELIGLLRA 1379
Query: 61 QRTGRALEESICYRTILLGITKTSMNTQSFISEASFQETARVLAKAALRGRID 113
+R GRAL+ESI YR ILLGIT+ S+NTQSFISEASFQETARVLAKAALRGRID
Sbjct: 1380 ERAGRALDESIYYRAILLGITRVSLNTQSFISEASFQETARVLAKAALRGRID 1432
>ref|YP_052741.1| RNA polymerase beta' subunit-2 [Oryza nivara]
gi|49614987|dbj|BAD26770.1| RNA polymerase beta'
subunit-2 [Oryza nivara]
Length = 1513
Score = 190 bits (482), Expect = 8e-48
Identities = 99/113 (87%), Positives = 106/113 (93%)
Query: 1 AQSRISLVNKIQRVYRSQGVHIHNRHIEIIVRQITSKVLVSEDGMSNVFSLGELIGLLRA 60
AQSRISLVNKIQ+VYRSQGV IHNRHIEII+RQ+TSKV VSEDGMSNVFS GELIGLLRA
Sbjct: 1320 AQSRISLVNKIQKVYRSQGVQIHNRHIEIIIRQVTSKVRVSEDGMSNVFSPGELIGLLRA 1379
Query: 61 QRTGRALEESICYRTILLGITKTSMNTQSFISEASFQETARVLAKAALRGRID 113
+R GRAL+ESI YR ILLGIT+ S+NTQSFISEASFQETARVLAKAALRGRID
Sbjct: 1380 ERAGRALDESIYYRAILLGITRVSLNTQSFISEASFQETARVLAKAALRGRID 1432
>ref|NP_114251.1| RNA polymerase beta'' chain [Triticum aestivum]
gi|15214266|sp|Q9XPS9|RPOC2_WHEAT DNA-directed RNA
polymerase beta'' chain (PEP) (Plastid-encoded RNA
polymerase beta'' subunit) (RNA polymerase beta''
subunit) gi|4958869|dbj|BAA78042.1| RNA polymerase
subunit beta [Triticum aestivum]
gi|13928197|dbj|BAB47026.1| RNA polymerase beta'
subunit-2 [Triticum aestivum]
Length = 1479
Score = 190 bits (482), Expect = 8e-48
Identities = 99/113 (87%), Positives = 106/113 (93%)
Query: 1 AQSRISLVNKIQRVYRSQGVHIHNRHIEIIVRQITSKVLVSEDGMSNVFSLGELIGLLRA 60
AQSRISLVNKIQ+VYRSQGV IHNRHIEII+RQ+TSKV VSEDGMSNVFS GELIGLLRA
Sbjct: 1295 AQSRISLVNKIQKVYRSQGVQIHNRHIEIIIRQVTSKVRVSEDGMSNVFSPGELIGLLRA 1354
Query: 61 QRTGRALEESICYRTILLGITKTSMNTQSFISEASFQETARVLAKAALRGRID 113
+R GRAL+ESI YR ILLGIT+ S+NTQSFISEASFQETARVLAKAALRGRID
Sbjct: 1355 ERAGRALDESIYYRAILLGITRASLNTQSFISEASFQETARVLAKAALRGRID 1407
Database: nr
Posted date: Jul 5, 2005 12:34 AM
Number of letters in database: 863,360,394
Number of sequences in database: 2,540,612
Lambda K H
0.322 0.134 0.352
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 136,533,403
Number of Sequences: 2540612
Number of extensions: 4299735
Number of successful extensions: 10650
Number of sequences better than 10.0: 373
Number of HSP's better than 10.0 without gapping: 368
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 9920
Number of HSP's gapped (non-prelim): 427
length of query: 113
length of database: 863,360,394
effective HSP length: 89
effective length of query: 24
effective length of database: 637,245,926
effective search space: 15293902224
effective search space used: 15293902224
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 68 (30.8 bits)
Lotus: description of TM0177.9