BLAST2 result
BLASTP 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TM0175.3
(520 letters)
Database: nr
2,540,612 sequences; 863,360,394 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_197758.2| polynucleotide adenylyltransferase family prote... 597 e-169
gb|AAM91472.1| AT5g23690/MQM1_4 [Arabidopsis thaliana] gi|183778... 594 e-168
emb|CAB87911.1| putative protein [Arabidopsis thaliana] gi|15229... 572 e-161
dbj|BAA97232.1| unnamed protein product [Arabidopsis thaliana] 543 e-153
emb|CAD40772.1| OSJNBb0039F02.3 [Oryza sativa (japonica cultivar... 532 e-150
ref|NP_973924.1| polynucleotide adenylyltransferase family prote... 499 e-140
ref|NP_174130.2| polynucleotide adenylyltransferase family prote... 499 e-140
pir||F86406 52.2K hypothetical protein F13K9.19 - Arabidopsis th... 459 e-128
ref|NP_179349.2| polynucleotide adenylyltransferase family prote... 334 4e-90
ref|XP_470176.1| Putative poly(A) polymerase [Oryza sativa (japo... 300 6e-80
dbj|BAC41875.1| putative poly(A) polymerase [Arabidopsis thaliana] 222 2e-56
gb|AAD32915.1| putative poly(A) polymerase [Arabidopsis thaliana... 166 2e-39
gb|AAF39507.1| poly(A) polymerase family protein [Chlamydia muri... 158 3e-37
ref|NP_219920.1| PolyA Polymerase [Chlamydia trachomatis D/UW-3/... 157 8e-37
emb|CAH64205.1| putative poly(A) polymerase [Chlamydophila abort... 154 7e-36
gb|AAP05532.1| poly(A) polymerase family protein [Chlamydophila ... 154 9e-36
ref|NP_301023.1| poly A polymerase [Chlamydophila pneumoniae J13... 151 6e-35
gb|AAP98932.1| poly(A) polymerase [Chlamydophila pneumoniae TW-1... 150 7e-35
ref|NP_225159.1| Poly A Polymerase [Chlamydophila pneumoniae CWL... 150 7e-35
ref|YP_233926.1| Poly(A) polymerase [Pseudomonas syringae pv. sy... 150 1e-34
>ref|NP_197758.2| polynucleotide adenylyltransferase family protein [Arabidopsis
thaliana]
Length = 527
Score = 597 bits (1538), Expect = e-169
Identities = 295/463 (63%), Positives = 375/463 (80%), Gaps = 3/463 (0%)
Query: 59 WKKLNSKELGLRNSMIAHPTKRVLSTLKKKGYDVYLVGGCVRDLILKQTPKDFDILTSAD 118
WK+LNSK+LGL +SMIA T++VL+ LK KG+DVYLVGGCVRDLILK+TPKDFDILTSA+
Sbjct: 64 WKQLNSKDLGLSSSMIAKSTRKVLNGLKSKGHDVYLVGGCVRDLILKRTPKDFDILTSAE 123
Query: 119 LKEVMRSFSWCEIVGKRFPICHVHMDGTVVEVSSFNTNKFKPRTRFVHDIEAPNGCD-NE 177
L+EV+R+F CEIVG+RFPICHVH+ ++EVSSF+T+ + + +G D +E
Sbjct: 124 LREVVRTFPRCEIVGRRFPICHVHIGDDLIEVSSFSTSAQNSSRNTRTECKESSGSDGDE 183
Query: 178 DFLRWKNCLNRDFTINGLMFDPYAKIVYDYMGGMEDIVKAKVRTVVPAATSFQEDCARIL 237
D +R NCL RDFTINGLMFDPYAK+VYDY+GGMEDI KAKVRTV+ A TSF +DCARIL
Sbjct: 184 DCIRLNNCLQRDFTINGLMFDPYAKVVYDYLGGMEDIRKAKVRTVIHAGTSFHQDCARIL 243
Query: 238 RAIRIAARLGFSISRETAHSVKNLSYSILRLDKGRLMMEMNYMLAYGSAEASLRLLWRFG 297
RAIRIAARLGF +S+ETAH +KNLS + RLDKGR++MEMNYMLAYGSAEASLRLLW+FG
Sbjct: 244 RAIRIAARLGFRMSKETAHFIKNLSLLVQRLDKGRILMEMNYMLAYGSAEASLRLLWKFG 303
Query: 298 LLDILLPFQAVYFVHHRFRRRDKRTNMLLSLFSNLDKLLAPNRPCHSSLWVGILALHKTL 357
+L+ILLP QA Y FRRRDKRTNMLLSLF+NLDKLLAP+RPCHSSLW+ ILA HK L
Sbjct: 304 ILEILLPIQAAYLARSGFRRRDKRTNMLLSLFANLDKLLAPDRPCHSSLWIAILAFHKAL 363
Query: 358 SDQPRNPLVVAAFSLAVHNGGNLLEAVDISRRINQPHDDRFPELLDPSD-LEAEALADEI 416
+D+PR+P+VVAAFSLAVHN G++LEAV+I+++I +PHD F EL++P + L+ + L DE+
Sbjct: 364 ADKPRSPIVVAAFSLAVHNCGDILEAVEITKKITRPHDKSFFELVEPEENLDFQTLLDEV 423
Query: 417 LDLAESVKESLLQMTTRHMVSQAMADYPQAPHSDMVFIPLGMYLKTVSIFDCLRARAGR- 475
+DL S++++L QMT + +S+AM+ YPQAP+SD+VFIPL +YL+ IFDC++ R
Sbjct: 424 MDLDASIEDALNQMTDAYFISKAMSAYPQAPYSDLVFIPLQLYLRAGRIFDCVKNEETRI 483
Query: 476 KFLSKQDRKTDYESLAHGDLQEVRHMLAMVVFDTIYPLHLDRD 518
F +KQ K +Y SL G E+RH+ A VVFDT++PL+L ++
Sbjct: 484 GFEAKQGSKIEYGSLNSGYFPEIRHVFARVVFDTVFPLNLSQE 526
>gb|AAM91472.1| AT5g23690/MQM1_4 [Arabidopsis thaliana] gi|18377862|gb|AAL67117.1|
AT5g23690/MQM1_4 [Arabidopsis thaliana]
Length = 527
Score = 594 bits (1532), Expect = e-168
Identities = 294/463 (63%), Positives = 374/463 (80%), Gaps = 3/463 (0%)
Query: 59 WKKLNSKELGLRNSMIAHPTKRVLSTLKKKGYDVYLVGGCVRDLILKQTPKDFDILTSAD 118
WK+LNSK+LGL +SMIA T++VL+ LK KG+DVYLVGGCVRDLILK+TPKDFDILTSA+
Sbjct: 64 WKQLNSKDLGLSSSMIAKSTRKVLNGLKSKGHDVYLVGGCVRDLILKRTPKDFDILTSAE 123
Query: 119 LKEVMRSFSWCEIVGKRFPICHVHMDGTVVEVSSFNTNKFKPRTRFVHDIEAPNGCD-NE 177
L+EV+R+F CEIVG+RFPICHVH+ ++EVSSF+T+ + + +G D +E
Sbjct: 124 LREVVRTFPRCEIVGRRFPICHVHIGDDLIEVSSFSTSAQNSSRNTRTECKESSGSDGDE 183
Query: 178 DFLRWKNCLNRDFTINGLMFDPYAKIVYDYMGGMEDIVKAKVRTVVPAATSFQEDCARIL 237
D +R NCL RDFTINGLMFDPYAK+VYDY+GGMEDI KAKVRT + A TSF +DCARIL
Sbjct: 184 DCIRLNNCLQRDFTINGLMFDPYAKVVYDYLGGMEDIRKAKVRTEIHAGTSFHQDCARIL 243
Query: 238 RAIRIAARLGFSISRETAHSVKNLSYSILRLDKGRLMMEMNYMLAYGSAEASLRLLWRFG 297
RAIRIAARLGF +S+ETAH +KNLS + RLDKGR++MEMNYMLAYGSAEASLRLLW+FG
Sbjct: 244 RAIRIAARLGFRMSKETAHFIKNLSLLVQRLDKGRILMEMNYMLAYGSAEASLRLLWKFG 303
Query: 298 LLDILLPFQAVYFVHHRFRRRDKRTNMLLSLFSNLDKLLAPNRPCHSSLWVGILALHKTL 357
+L+ILLP QA Y FRRRDKRTNMLLSLF+NLDKLLAP+RPCHSSLW+ ILA HK L
Sbjct: 304 ILEILLPIQAAYLARSGFRRRDKRTNMLLSLFANLDKLLAPDRPCHSSLWIAILAFHKAL 363
Query: 358 SDQPRNPLVVAAFSLAVHNGGNLLEAVDISRRINQPHDDRFPELLDPSD-LEAEALADEI 416
+D+PR+P+VVAAFSLAVHN G++LEAV+I+++I +PHD F EL++P + L+ + L DE+
Sbjct: 364 ADKPRSPIVVAAFSLAVHNCGDILEAVEITKKITRPHDKSFFELVEPEENLDFQTLLDEV 423
Query: 417 LDLAESVKESLLQMTTRHMVSQAMADYPQAPHSDMVFIPLGMYLKTVSIFDCLRARAGR- 475
+DL S++++L QMT + +S+AM+ YPQAP+SD+VFIPL +YL+ IFDC++ R
Sbjct: 424 MDLDASIEDALNQMTDAYFISKAMSAYPQAPYSDLVFIPLQLYLRAGRIFDCVKNEETRI 483
Query: 476 KFLSKQDRKTDYESLAHGDLQEVRHMLAMVVFDTIYPLHLDRD 518
F +KQ K +Y SL G E+RH+ A VVFDT++PL+L ++
Sbjct: 484 GFEAKQGSKIEYGSLNSGYFPEIRHVFARVVFDTVFPLNLSQE 526
>emb|CAB87911.1| putative protein [Arabidopsis thaliana]
gi|15229038|ref|NP_190452.1| polynucleotide
adenylyltransferase family protein / RNA recognition
motif (RRM)-containing protein [Arabidopsis thaliana]
gi|11358180|pir||T49279 hypothetical protein T21J18.100
- Arabidopsis thaliana
Length = 881
Score = 572 bits (1473), Expect = e-161
Identities = 292/499 (58%), Positives = 369/499 (73%), Gaps = 20/499 (4%)
Query: 1 MATATTLKFVCKPNLHLRIAP-FQCVRKVSQLKL----------NLNHTHHLASSFISVC 49
MA + F C+ H + P F C KV + + +H H S+
Sbjct: 1 MAVLSVGFFACRS--HFPVLPLFYCFSKVQLNTVAAAMETVDDKDSDHHHDKGSN----- 53
Query: 50 FPQNKKTPAWKKLNSKELGLRNSMIAHPTKRVLSTLKKKGYDVYLVGGCVRDLILKQTPK 109
+ K P WKKLNSK+LG+ SMI+ PT+ VL+ LK KGYDVYLVGGCVRDLILK+TPK
Sbjct: 54 --KTSKAPEWKKLNSKDLGITTSMISKPTRIVLNGLKSKGYDVYLVGGCVRDLILKRTPK 111
Query: 110 DFDILTSADLKEVMRSFSWCEIVGKRFPICHVHMDGTVVEVSSFNTNKFKPRTRFVHDIE 169
DFDILTSA+L+EV+RSFS CEI+GK+FPICHVH+ ++EVSSF+T+
Sbjct: 112 DFDILTSAELREVVRSFSRCEIIGKKFPICHVHIGNDMIEVSSFSTSAQNSLRNTRTGSG 171
Query: 170 APNGCDNEDFLRWKNCLNRDFTINGLMFDPYAKIVYDYMGGMEDIVKAKVRTVVPAATSF 229
NG +ED +R+ NCL RDFTINGLMFDPYAK++YDY+GG+EDI KAKVRTV A TSF
Sbjct: 172 KSNGSYDEDSIRFNNCLQRDFTINGLMFDPYAKVIYDYLGGIEDIKKAKVRTVFHAGTSF 231
Query: 230 QEDCARILRAIRIAARLGFSISRETAHSVKNLSYSILRLDKGRLMMEMNYMLAYGSAEAS 289
QED ARILR RIAARLGF+IS+ETAH +KNLS+ + RL +GR+++EMNYMLAYGSAEAS
Sbjct: 232 QEDSARILRGTRIAARLGFTISKETAHFLKNLSFLVQRLHRGRILLEMNYMLAYGSAEAS 291
Query: 290 LRLLWRFGLLDILLPFQAVYFVHHRFRRRDKRTNMLLSLFSNLDKLLAPNRPCHSSLWVG 349
LRLLW+FG+L+ILLP QA Y V F+RRDKR+N+LLSLF NLDKLLAP++PCHSSLW+
Sbjct: 292 LRLLWKFGILEILLPIQAAYLVRTGFKRRDKRSNLLLSLFGNLDKLLAPDKPCHSSLWLT 351
Query: 350 ILALHKTLSDQPRNPLVVAAFSLAVHNGGNLLEAVDISRRINQPHDDRFPELLDPSDLEA 409
ILALHK L+DQPR P VVAAFSLAVHNGG++LEAV +R++ +PH+ F ELL+P ++++
Sbjct: 352 ILALHKALADQPRYPSVVAAFSLAVHNGGDVLEAVKNTRKVTKPHNRSFFELLEPEEMDS 411
Query: 410 EALADEILDLAESVKESLLQMTTRHMVSQAMADYPQAPHSDMVFIPLGMYLKTVSIFDCL 469
+ L DE++D S+KE+L QMT +S+AMA YPQAP+SDMVFIPL +YL IF+C+
Sbjct: 412 QTLLDEVMDFDSSIKEALGQMTDGRFISKAMAAYPQAPYSDMVFIPLQLYLDARRIFECV 471
Query: 470 RARAGRKFLSKQDRKTDYE 488
+ + F+ KQD K + E
Sbjct: 472 KENGQKGFVPKQDSKREPE 490
>dbj|BAA97232.1| unnamed protein product [Arabidopsis thaliana]
Length = 499
Score = 543 bits (1399), Expect = e-153
Identities = 282/463 (60%), Positives = 355/463 (75%), Gaps = 31/463 (6%)
Query: 59 WKKLNSKELGLRNSMIAHPTKRVLSTLKKKGYDVYLVGGCVRDLILKQTPKDFDILTSAD 118
WK+LNSK+LGL +SMIA T++VL+ LK KG+DVYLVGGCVRDLILK+TPKDFDILTSA+
Sbjct: 64 WKQLNSKDLGLSSSMIAKSTRKVLNGLKSKGHDVYLVGGCVRDLILKRTPKDFDILTSAE 123
Query: 119 LKEVMRSFSWCEIVGKRFPICHVHMDGTVVEVSSFNTNKFKPRTRFVHDIEAPNGCD-NE 177
L+EV SFS T + SS NT + + +G D +E
Sbjct: 124 LREV-SSFS------------------TSAQNSSRNTRT---------ECKESSGSDGDE 155
Query: 178 DFLRWKNCLNRDFTINGLMFDPYAKIVYDYMGGMEDIVKAKVRTVVPAATSFQEDCARIL 237
D +R NCL RDFTINGLMFDPYAK+VYDY+GGMEDI KAKVRTV+ A TSF +DCARIL
Sbjct: 156 DCIRLNNCLQRDFTINGLMFDPYAKVVYDYLGGMEDIRKAKVRTVIHAGTSFHQDCARIL 215
Query: 238 RAIRIAARLGFSISRETAHSVKNLSYSILRLDKGRLMMEMNYMLAYGSAEASLRLLWRFG 297
RAIRIAARLGF +S+ETAH +KNLS + RLDKGR++MEMNYMLAYGSAEASLRLLW+FG
Sbjct: 216 RAIRIAARLGFRMSKETAHFIKNLSLLVQRLDKGRILMEMNYMLAYGSAEASLRLLWKFG 275
Query: 298 LLDILLPFQAVYFVHHRFRRRDKRTNMLLSLFSNLDKLLAPNRPCHSSLWVGILALHKTL 357
+L+ILLP QA Y FRRRDKRTNMLLSLF+NLDKLLAP+RPCHSSLW+ ILA HK L
Sbjct: 276 ILEILLPIQAAYLARSGFRRRDKRTNMLLSLFANLDKLLAPDRPCHSSLWIAILAFHKAL 335
Query: 358 SDQPRNPLVVAAFSLAVHNGGNLLEAVDISRRINQPHDDRFPELLDPSD-LEAEALADEI 416
+D+PR+P+VVAAFSLAVHN G++LEAV+I+++I +PHD F EL++P + L+ + L DE+
Sbjct: 336 ADKPRSPIVVAAFSLAVHNCGDILEAVEITKKITRPHDKSFFELVEPEENLDFQTLLDEV 395
Query: 417 LDLAESVKESLLQMTTRHMVSQAMADYPQAPHSDMVFIPLGMYLKTVSIFDCLRARAGR- 475
+DL S++++L QMT + +S+AM+ YPQAP+SD+VFIPL +YL+ IFDC++ R
Sbjct: 396 MDLDASIEDALNQMTDAYFISKAMSAYPQAPYSDLVFIPLQLYLRAGRIFDCVKNEETRI 455
Query: 476 KFLSKQDRKTDYESLAHGDLQEVRHMLAMVVFDTIYPLHLDRD 518
F +KQ K +Y SL G E+RH+ A VVFDT++PL+L ++
Sbjct: 456 GFEAKQGSKIEYGSLNSGYFPEIRHVFARVVFDTVFPLNLSQE 498
>emb|CAD40772.1| OSJNBb0039F02.3 [Oryza sativa (japonica cultivar-group)]
gi|50923935|ref|XP_472328.1| OSJNBb0039F02.3 [Oryza
sativa (japonica cultivar-group)]
Length = 542
Score = 532 bits (1371), Expect = e-150
Identities = 263/467 (56%), Positives = 350/467 (74%), Gaps = 3/467 (0%)
Query: 55 KTPAWKKLNSKELGLRNSMIAHPTKRVLSTLKKKGYDVYLVGGCVRDLILKQTPKDFDIL 114
+ P WKK+++K G+++SMI VL L+ +GYDVYLVGGCVRDLI+K+TPKDFDI+
Sbjct: 73 EAPEWKKVSAKRFGIKDSMIPDEAWNVLHRLRSRGYDVYLVGGCVRDLIMKKTPKDFDII 132
Query: 115 TSADLKEVMRSFSWCE-IVGKRFPICHVHMDGTVVEVSSFNTNKFKPRTRFVHDIEAPNG 173
T+ADL++V +FS IVG+RFPICHV+ + ++VEVSSFNT + ++ ++P+
Sbjct: 133 TTADLRQVKDTFSGSAVIVGRRFPICHVYENNSIVEVSSFNTYARGSTSNQIYTSKSPH- 191
Query: 174 CDNEDFLRWKNCLNRDFTINGLMFDPYAKIVYDYMGGMEDIVKAKVRTVVPAATSFQEDC 233
C D++RWKNC RDFTINGLMF+PYA+ +YDY GG+EDI KAKVRTV+PA TSFQEDC
Sbjct: 192 CSKNDYIRWKNCQGRDFTINGLMFNPYAEKIYDYFGGIEDIKKAKVRTVIPAGTSFQEDC 251
Query: 234 ARILRAIRIAARLGFSISRETAHSVKNLSYSILRLDKGRLMMEMNYMLAYGSAEASLRLL 293
ARILRAIRIAARLGF+ +ETA+ V+ L+ S+ RLDKGR++ME+NYMLAYGSAEASLRLL
Sbjct: 252 ARILRAIRIAARLGFNFPKETAYYVRTLACSVARLDKGRILMEINYMLAYGSAEASLRLL 311
Query: 294 WRFGLLDILLPFQAVYFVHHRFRRRDKRTNMLLSLFSNLDKLLAPNRPCHSSLWVGILAL 353
WRFGLL+ LLPFQA YF RF+R+DK TNMLL LFS LD LAPNRPCH+SLW+ ILAL
Sbjct: 312 WRFGLLEHLLPFQAAYFSSTRFKRKDKGTNMLLVLFSKLDNFLAPNRPCHNSLWISILAL 371
Query: 354 HKTLSDQPRNPLVVAAFSLAVHNGGNLLEAVDISRRINQPHDDRFPELLDPSDLEAEALA 413
H+ L QPR+PLVVA F+LA++ GG++ A+DI + IN+ H+ F ELL+P + + L
Sbjct: 372 HEALVRQPRDPLVVATFALALYLGGDMSLALDIGKSINRQHNTGFSELLEPQVWDDKHLV 431
Query: 414 DEILDLAESVKESLLQMTTRHMVSQAMADYPQAPHSDMVFIPLGMYLKTVSIFDCLR-AR 472
E+ LA S++ +L +MT + V+ AMA PQAP SD+VFIPL YLK + + +C++ +
Sbjct: 432 GEVQSLAVSMRRALTEMTDEYFVANAMAKIPQAPSSDLVFIPLQAYLKVLKLIECVQHGK 491
Query: 473 AGRKFLSKQDRKTDYESLAHGDLQEVRHMLAMVVFDTIYPLHLDRDQ 519
+ K+D DY L++G EVR++ +VVF+T+YP + + Q
Sbjct: 492 KEHGYEPKRDGNIDYHDLSYGTPAEVRNVFTLVVFNTLYPSNTENQQ 538
>ref|NP_973924.1| polynucleotide adenylyltransferase family protein [Arabidopsis
thaliana]
Length = 505
Score = 499 bits (1285), Expect = e-140
Identities = 252/464 (54%), Positives = 335/464 (71%), Gaps = 6/464 (1%)
Query: 55 KTPAWKKLNSKELGLRNSMIAHPTKRVLSTLKKKGYDVYLVGGCVRDLILKQTPKDFDIL 114
K+ WKKL++ E G++ SMI T+ VL+ LKKKG+ VYLVGGCVRDLIL + PKDFD++
Sbjct: 42 KSMPWKKLDANEFGIQRSMIPDSTRMVLNKLKKKGFQVYLVGGCVRDLILDRIPKDFDVI 101
Query: 115 TSADLKEVMRSFSWCEIVGKRFPICHVHMDGTVVEVSSFNTNKFKPRTRFVHDIEAPNGC 174
T+A+LKEV + F C+IVG+RFPICHV++D ++EVSSF+T+ + P GC
Sbjct: 102 TTAELKEVRKVFPGCQIVGRRFPICHVYVDDIIIEVSSFSTSARTGKAPN-KSFRRPAGC 160
Query: 175 DNEDFLRWKNCLNRDFTINGLMFDPYAKIVYDYMGGMEDIVKAKVRTVVPAATSFQEDCA 234
D D++RWKNCL RDFT+NGLMFDP +VYDY+GG+ED+ +KVRTV A SF ED A
Sbjct: 161 DERDYIRWKNCLQRDFTVNGLMFDPSENVVYDYIGGVEDLRNSKVRTVSAANLSFVEDTA 220
Query: 235 RILRAIRIAARLGFSISRETAHSVKNLSYSILRLDKGRLMMEMNYMLAYGSAEASLRLLW 294
RILRAIRIAARLGFS++++ A SVK LS S+LRLD R+ ME+NYMLAYGSAEASLRLLW
Sbjct: 221 RILRAIRIAARLGFSLTKDVAISVKELSSSLLRLDPSRIRMEINYMLAYGSAEASLRLLW 280
Query: 295 RFGLLDILLPFQAVYFVHHRFRRRDKRTNMLLSLFSNLDKLLAPNRPCHSSLWVGILALH 354
RFGL++ILLP QA Y V FRRRD R+NMLLSLF NLD+L+AP+RPC LW+GILA H
Sbjct: 281 RFGLMEILLPIQASYLVSQGFRRRDGRSNMLLSLFRNLDRLVAPDRPCSEFLWIGILAFH 340
Query: 355 KTLSDQPRNPLVVAAFSLAVHNGGNLLEAVDISRRINQPHDDRFPELLDPSDLEAEA--- 411
K L DQPR+P VVA+F LA+++ +L EA+ I+R ++ H+ F EL P A++
Sbjct: 341 KALVDQPRDPTVVASFCLAIYSEVSLSEAIAIARSNSKQHNSHFQELSSPEKDTADSESK 400
Query: 412 LADEILDLAESVKESLLQMTTRHMVSQAMADYPQAPHSDMVFIPLGMYLKTVSIFDCLRA 471
++ +++ LAES++ + ++ R ++ AM+ YPQAP SDMVF+ M + +F +R
Sbjct: 401 ISQQVIKLAESIRSAARKLNNRDYIANAMSKYPQAPGSDMVFLSRLMLERVEKMFGNVRR 460
Query: 472 RAG--RKFLSKQDRKTDYESLAHGDLQEVRHMLAMVVFDTIYPL 513
+ R + +R+ +Y+SLA GD E R + A +VFDTIYPL
Sbjct: 461 KGNQERDDVPSLERRINYKSLALGDFHETRRVFARIVFDTIYPL 504
>ref|NP_174130.2| polynucleotide adenylyltransferase family protein [Arabidopsis
thaliana]
Length = 541
Score = 499 bits (1285), Expect = e-140
Identities = 252/464 (54%), Positives = 335/464 (71%), Gaps = 6/464 (1%)
Query: 55 KTPAWKKLNSKELGLRNSMIAHPTKRVLSTLKKKGYDVYLVGGCVRDLILKQTPKDFDIL 114
K+ WKKL++ E G++ SMI T+ VL+ LKKKG+ VYLVGGCVRDLIL + PKDFD++
Sbjct: 78 KSMPWKKLDANEFGIQRSMIPDSTRMVLNKLKKKGFQVYLVGGCVRDLILDRIPKDFDVI 137
Query: 115 TSADLKEVMRSFSWCEIVGKRFPICHVHMDGTVVEVSSFNTNKFKPRTRFVHDIEAPNGC 174
T+A+LKEV + F C+IVG+RFPICHV++D ++EVSSF+T+ + P GC
Sbjct: 138 TTAELKEVRKVFPGCQIVGRRFPICHVYVDDIIIEVSSFSTSARTGKAPN-KSFRRPAGC 196
Query: 175 DNEDFLRWKNCLNRDFTINGLMFDPYAKIVYDYMGGMEDIVKAKVRTVVPAATSFQEDCA 234
D D++RWKNCL RDFT+NGLMFDP +VYDY+GG+ED+ +KVRTV A SF ED A
Sbjct: 197 DERDYIRWKNCLQRDFTVNGLMFDPSENVVYDYIGGVEDLRNSKVRTVSAANLSFVEDTA 256
Query: 235 RILRAIRIAARLGFSISRETAHSVKNLSYSILRLDKGRLMMEMNYMLAYGSAEASLRLLW 294
RILRAIRIAARLGFS++++ A SVK LS S+LRLD R+ ME+NYMLAYGSAEASLRLLW
Sbjct: 257 RILRAIRIAARLGFSLTKDVAISVKELSSSLLRLDPSRIRMEINYMLAYGSAEASLRLLW 316
Query: 295 RFGLLDILLPFQAVYFVHHRFRRRDKRTNMLLSLFSNLDKLLAPNRPCHSSLWVGILALH 354
RFGL++ILLP QA Y V FRRRD R+NMLLSLF NLD+L+AP+RPC LW+GILA H
Sbjct: 317 RFGLMEILLPIQASYLVSQGFRRRDGRSNMLLSLFRNLDRLVAPDRPCSEFLWIGILAFH 376
Query: 355 KTLSDQPRNPLVVAAFSLAVHNGGNLLEAVDISRRINQPHDDRFPELLDPSDLEAEA--- 411
K L DQPR+P VVA+F LA+++ +L EA+ I+R ++ H+ F EL P A++
Sbjct: 377 KALVDQPRDPTVVASFCLAIYSEVSLSEAIAIARSNSKQHNSHFQELSSPEKDTADSESK 436
Query: 412 LADEILDLAESVKESLLQMTTRHMVSQAMADYPQAPHSDMVFIPLGMYLKTVSIFDCLRA 471
++ +++ LAES++ + ++ R ++ AM+ YPQAP SDMVF+ M + +F +R
Sbjct: 437 ISQQVIKLAESIRSAARKLNNRDYIANAMSKYPQAPGSDMVFLSRLMLERVEKMFGNVRR 496
Query: 472 RAG--RKFLSKQDRKTDYESLAHGDLQEVRHMLAMVVFDTIYPL 513
+ R + +R+ +Y+SLA GD E R + A +VFDTIYPL
Sbjct: 497 KGNQERDDVPSLERRINYKSLALGDFHETRRVFARIVFDTIYPL 540
>pir||F86406 52.2K hypothetical protein F13K9.19 - Arabidopsis thaliana
gi|12322982|gb|AAG51472.1| hypothetical protein
[Arabidopsis thaliana]
Length = 462
Score = 459 bits (1182), Expect = e-128
Identities = 235/427 (55%), Positives = 310/427 (72%), Gaps = 12/427 (2%)
Query: 55 KTPAWKKLNSKELGLRNSMIAHPTKRVLSTLKKKGYDVYLVGGCVRDLILKQTPKDFDIL 114
K+ WKKL++ E G++ SMI T+ VL+ LKKKG+ VYLVGGCVRDLIL + PKDFD++
Sbjct: 42 KSMPWKKLDANEFGIQRSMIPDSTRMVLNKLKKKGFQVYLVGGCVRDLILDRIPKDFDVI 101
Query: 115 TSADLKEVMRSFSWCEIVGKRFPICHVHMDGTVVEVSSFNTNKFKPRTRFVHDIEAPNGC 174
T+A+LKEV + F C+IVG+RFPICHV++D ++EVS T K P F P GC
Sbjct: 102 TTAELKEVRKVFPGCQIVGRRFPICHVYVDDIIIEVS--RTGK-APNKSF----RRPAGC 154
Query: 175 DNEDFLRWKNCLNRDFTINGLMFDPYAKIVYDYMGGMEDIVKAKVRTVVPAATSFQEDCA 234
D D++RWKNCL RDFT+NGLMFDP +VYDY+GG+ED+ +KVRTV A SF ED A
Sbjct: 155 DERDYIRWKNCLQRDFTVNGLMFDPSENVVYDYIGGVEDLRNSKVRTVSAANLSFVEDTA 214
Query: 235 RILRAIRIAARLGFSISRETAHSVKNLSYSILRLDKGRLMMEMNYMLAYGSAEASLRLLW 294
RILRAIRIAARLGFS++++ A SVK LS S+LRLD R+ ME+NYMLAYGSAEASLRLLW
Sbjct: 215 RILRAIRIAARLGFSLTKDVAISVKELSSSLLRLDPSRIRMEINYMLAYGSAEASLRLLW 274
Query: 295 RFGLLDILLPFQAVYFVHHRFRRRDKRTNMLLSLFSNLDKLLAPNRPCHSSLWVGILALH 354
RFGL++ILLP QA Y V FRRRD R+NMLLSLF NLD+L+AP+RPC LW+GILA H
Sbjct: 275 RFGLMEILLPIQASYLVSQGFRRRDGRSNMLLSLFRNLDRLVAPDRPCSEFLWIGILAFH 334
Query: 355 KTLSDQPRNPLVVAAFSLAVHNGGNLLEAVDISRRINQPHDDRFPELLDPSDLEAEA--- 411
K L DQPR+P VVA+F LA+++ +L EA+ I+R ++ H+ F EL P A++
Sbjct: 335 KALVDQPRDPTVVASFCLAIYSEVSLSEAIAIARSNSKQHNSHFQELSSPEKDTADSESK 394
Query: 412 LADEILDLAESVKESLLQMTTRHMVSQAMADYPQAPHSDMVFIPLGMYL--KTVSIFDCL 469
++ +++ LAES++ + ++ R ++ AM+ YPQAP SDMV I + Y+ +++ C
Sbjct: 395 ISQQVIKLAESIRSAARKLNNRDYIANAMSKYPQAPGSDMVGILVKTYVGESRENVWKCE 454
Query: 470 RARAGRK 476
+ R R+
Sbjct: 455 KKRKPRE 461
>ref|NP_179349.2| polynucleotide adenylyltransferase family protein [Arabidopsis
thaliana]
Length = 757
Score = 334 bits (857), Expect = 4e-90
Identities = 191/474 (40%), Positives = 283/474 (59%), Gaps = 23/474 (4%)
Query: 56 TPAWKKLNSKELGLRNSMIAHPTKRVLSTLKKKGYDVYLVGGCVRDLILKQTPKDFDILT 115
T WKK+ + + G++NSMI + VL L+++G+D YLVGGCVRDLIL + PKD+D++T
Sbjct: 56 TSKWKKVRASDAGIKNSMIPESSMNVLRLLRRQGFDAYLVGGCVRDLILNRVPKDYDVIT 115
Query: 116 SADLKEVMRSFSWCEIVGKRFPICHVHMDGTVVEVSSFNT--------NKFKPRTRFVHD 167
+ADLK++ R F +++GKRFPICHV M G+++EVSSF+T K K ++ D
Sbjct: 116 TADLKQIRRLFHRAQVIGKRFPICHVWMGGSIIEVSSFDTVAHSDSDLEKSKEKSGVSLD 175
Query: 168 IEAP---------NGCDNEDFLRWKNCLNRDFTINGLMFDPYAKIVYDYMGGMEDIVKAK 218
+A +G D +D RW+N L RDFTIN L ++P+ +YDY GMED+ K
Sbjct: 176 TKANKNNSLFKMYSGWDIKDCKRWRNSLQRDFTINSLFYNPFDFTIYDYANGMEDLTDLK 235
Query: 219 VRTVVPAATSFQEDCARILRAIRIAARLGFSISRETAHSVKNLSYSILRLDKGRLMMEMN 278
+RT+VPA SF+EDCARILR +RIAARLG S+S++ ++ S+ LD+ RL+MEMN
Sbjct: 236 LRTLVPAHLSFKEDCARILRGLRIAARLGLSLSKDVKTAIPEFVSSVANLDQFRLIMEMN 295
Query: 279 YMLAYGSAEASLRLLWRFGLLDILLPFQAVYFVHHRFRRRDKRTNMLLSLFSNLDKLLAP 338
YMLAYG+A S+ LL +F LL +LLPFQA Y + + + ML+ LFSN+DKL++
Sbjct: 296 YMLAYGAAAPSILLLMKFKLLHVLLPFQAAY-LDQASKTSLSSSLMLVRLFSNMDKLVSC 354
Query: 339 NRPCHSSLWVGILALHKTLSDQPRNPLVVAAFSLAVHNGGNLLEAVDISRRINQPHDDRF 398
++P LW+ +LA H L P+ +VV AF+ +++ GN +AV+ +R
Sbjct: 355 DQPADPKLWIAVLAFHIALVRNPQEAIVVRAFAALLYH-GNWSKAVEFAREHETSVIGYA 413
Query: 399 PELLDPSDLEA-EALADEILDLAESVKESLLQMTTRHMVSQAMADYPQAPHSDMVFIPLG 457
PE+ S + E LA+ + + +K++ +T + + +A+ YP S +VFIP
Sbjct: 414 PEVSKSSRKRSDEDLAEAVSEFTCLLKDTQYVLTDKEALREALYLYPDFKFSGLVFIPKK 473
Query: 458 MYLKTVSIFDCLRARAGRKFLS-KQDRKTDYESLAHGDLQEVRHMLAMVVFDTI 510
F +R + S K+ DY L G+ EVR +L ++ DTI
Sbjct: 474 KGRDVAEGF--MRLSDVESYESQKEGFSIDYVLLGKGNPCEVRFVLGKIILDTI 525
>ref|XP_470176.1| Putative poly(A) polymerase [Oryza sativa (japonica
cultivar-group)] gi|20502998|gb|AAM22707.1| Putative
poly(A) polymerase [Oryza sativa (japonica
cultivar-group)]
Length = 589
Score = 300 bits (769), Expect = 6e-80
Identities = 189/491 (38%), Positives = 273/491 (55%), Gaps = 43/491 (8%)
Query: 58 AWKKLNSKELGLRNSMIAHPTKRVLSTLKKKGYDVYLVGGCVRDLILKQTPKDFDILTSA 117
+W+ +S+ +G+ I VL LK+KG+ YLVGGCVRDL+LK+ PKDFD++T+A
Sbjct: 65 SWRYFDSRVVGITRGDIPRHAWTVLHMLKRKGFAAYLVGGCVRDLLLKRAPKDFDVITTA 124
Query: 118 DLKEVMRS-FSWCEIVGKRFPICHVHMDGTVVEVSSFNTNKFKPR-TRFVHDIEAPNGCD 175
L+++ + F C I+GKRFPIC V+M GT +EVSSF+TN + ++ + E D
Sbjct: 125 SLQQIKKMVFQRCIIIGKRFPICQVNMYGTKIEVSSFSTNANHVKGSKNIGCSEEFKRYD 184
Query: 176 NEDFLRWKNCLNRDFTINGLMFDPYAKIVYDYMGGMEDIVKAKVRTVVPAATSFQED--- 232
D L W+N + RDFTIN L F+P+ +YDY+ G+ DI K KV TV+PA SF+ED
Sbjct: 185 EGDILLWQNSMKRDFTINSLFFNPFNFKIYDYVNGVRDISKNKVSTVIPARVSFKEDPGR 244
Query: 233 -------CARILRAIRIAARLGFSISRETAHSVKNLSYSILRLDKGRLMMEMNYMLAYGS 285
ARILR +RIAARLGF S ET+ +++ LS SI +DK RLMME+NY+L+YG+
Sbjct: 245 KFRFWFISARILRGLRIAARLGFEFSSETSAAIRELSLSITDIDKARLMMELNYLLSYGA 304
Query: 286 AEASLRLLWRFGLLDILLPFQAVYFVHHRFRRRDKRTNMLLSLFSNLDKLLAPNRPCHSS 345
A +SLRLL ++GLLD LLPFQA Y + + ML+ L +NLDKLL+ ++PC S
Sbjct: 305 AASSLRLLRKYGLLDFLLPFQAAYMSDQMKDKSNDTDLMLMKLLANLDKLLSADQPCPS- 363
Query: 346 LWVGILALHKTLSDQPRNPLVVAAFSLAVHNGGNLLEAVDISR---------RINQPHDD 396
L L TL P++ L + + L + R +N PHD
Sbjct: 364 ----CLCLRDTLMCTLNVPILCLIQFLYILSKSRLWHFMLFHRLALLTFHSALVNSPHDA 419
Query: 397 R----------------FPELLDPSDLEAEALADEILDLAESVKESLLQMTTRHMVSQAM 440
+ PE L PS + E L ++ LA VK S+ +T+ + Q++
Sbjct: 420 QGAVNFLNQDIGAPAPFIPETLGPSRSKLENLMEQTSHLASLVKSSVDTLTSIDALQQSL 479
Query: 441 ADYPQAPH-SDMVFIPLGMYLKTVSIFDCLRARAGRKFLSKQDRKTDYESLAHGDLQEVR 499
A Y +A S +V + + + IF+ L ++ ++ DY+ L G EVR
Sbjct: 480 AKYSKASQVSGLVLVSSRERERVLRIFEGLDTDLTSYEGTRGMQEIDYKLLKDGHPGEVR 539
Query: 500 HMLAMVVFDTI 510
+L V+ DT+
Sbjct: 540 FVLGQVIMDTM 550
>dbj|BAC41875.1| putative poly(A) polymerase [Arabidopsis thaliana]
Length = 571
Score = 222 bits (566), Expect = 2e-56
Identities = 133/341 (39%), Positives = 198/341 (58%), Gaps = 6/341 (1%)
Query: 172 NGCDNEDFLRWKNCLNRDFTINGLMFDPYAKIVYDYMGGMEDIVKAKVRTVVPAATSFQE 231
+G D +D RW+N L RDFTIN L ++P+ +YDY GMED+ K+RT+VPA SF+E
Sbjct: 3 SGWDIKDCKRWRNSLQRDFTINSLFYNPFDFTIYDYANGMEDLTDLKLRTLVPAHLSFKE 62
Query: 232 DCARILRAIRIAARLGFSISRETAHSVKNLSYSILRLDKGRLMMEMNYMLAYGSAEASLR 291
DCARILR +RIAARLG S+S++ ++ S+ LD+ RL+MEMNYMLAYG+A S+
Sbjct: 63 DCARILRGLRIAARLGLSLSKDVKTAIPEFVSSVANLDQFRLIMEMNYMLAYGAAAPSIL 122
Query: 292 LLWRFGLLDILLPFQAVYFVHHRFRRRDKRTNMLLSLFSNLDKLLAPNRPCHSSLWVGIL 351
LL +F LL +LLPFQA Y + + + ML+ LFSN+DKL++ ++P LW+ +L
Sbjct: 123 LLMKFKLLHVLLPFQAAY-LDQASKTSLSSSLMLVRLFSNMDKLVSCDQPADPKLWIAVL 181
Query: 352 ALHKTLSDQPRNPLVVAAFSLAVHNGGNLLEAVDISRRINQPHDDRFPELLDPSDLEA-E 410
A H L P+ +VV AF+ +++ GN +AV+ +R PE+ S + E
Sbjct: 182 AFHIALVRNPQEAIVVRAFAALLYH-GNWSKAVEFAREHGTSVIGYAPEVSKSSRKRSDE 240
Query: 411 ALADEILDLAESVKESLLQMTTRHMVSQAMADYPQAPHSDMVFIPLGMYLKTVSIFDCLR 470
LA+ + + +K++ +T + + +A+ YP S +VFIP F +R
Sbjct: 241 DLAEAVSEFTCLLKDTQYVLTDKEALREALYLYPDFKFSGLVFIPKKKGRDVAEGF--MR 298
Query: 471 ARAGRKFLS-KQDRKTDYESLAHGDLQEVRHMLAMVVFDTI 510
+ S K+ DY L G+ EVR +L ++ DTI
Sbjct: 299 LSDVESYESQKEGFSIDYVLLGKGNPCEVRFVLGKIILDTI 339
>gb|AAD32915.1| putative poly(A) polymerase [Arabidopsis thaliana]
gi|25411800|pir||H84553 probable poly(A) polymerase
[imported] - Arabidopsis thaliana
Length = 241
Score = 166 bits (420), Expect = 2e-39
Identities = 90/215 (41%), Positives = 132/215 (60%), Gaps = 20/215 (9%)
Query: 79 KRVLSTLKKKGYDVYLVGGCVRDLILKQTPKDFDILTSADLKEVMRSFSWCEIVGKRFPI 138
++V+ G+D YLVGGCVRDLIL + PKD+D++T+ADLK++ R F +++GKRFPI
Sbjct: 8 RQVIDEDINSGFDAYLVGGCVRDLILNRVPKDYDVITTADLKQIRRLFHRAQVIGKRFPI 67
Query: 139 CHVHMDGTVVEVSSFNT--------NKFKPRTRFVHDIEAP---------NGCDNEDFLR 181
CHV M G+++EVSSF+T K K ++ D +A +G D +D R
Sbjct: 68 CHVWMGGSIIEVSSFDTVAHSDSDLEKSKEKSGVSLDTKANKNNSLFKMYSGWDIKDCKR 127
Query: 182 WKNCLNRDFTINGLMFDPYAKIVYDYMGGMEDIVKAKVRTVVPAATSFQEDCARILRAIR 241
W+N L RDFTIN L ++P+ +YDY GMED+ K + V+ + F + ARILR +R
Sbjct: 128 WRNSLQRDFTINSLFYNPFDFTIYDYANGMEDLTDLKFK-VLTILSWFSPNTARILRGLR 186
Query: 242 IAARLGFSISRETAHSVKNLSYSILRLDKGRLMME 276
IAARLG S+S++ ++ + + KGR + E
Sbjct: 187 IAARLGLSLSKDVKTAIP--EFVFIPKKKGRDVAE 219
>gb|AAF39507.1| poly(A) polymerase family protein [Chlamydia muridarum Nigg]
gi|15835306|ref|NP_297065.1| poly(A) polymerase family
protein [Chlamydia muridarum Nigg]
gi|11362545|pir||D81676 poly(A) polymerase family
protein TC0691 [imported] - Chlamydia muridarum (strain
Nigg)
Length = 425
Score = 158 bits (400), Expect = 3e-37
Identities = 82/230 (35%), Positives = 135/230 (58%), Gaps = 8/230 (3%)
Query: 81 VLSTLKKKGYDVYLVGGCVRDLILKQTPKDFDILTSADLKEVMRSFSWCEIVGKRFPICH 140
V+ TLKK GY+ Y+VGGC+RDL+LK PKDFD+ TSA +EV F C +VGKRF + H
Sbjct: 49 VVRTLKKAGYEAYIVGGCIRDLLLKTEPKDFDVSTSAKPEEVKALFKNCILVGKRFRLAH 108
Query: 141 VHMDGTVVEVSSFNTNKFKPRTRFVHDIEAPNGCDNEDFLRWKNCLNRDFTINGLMFDPY 200
+ ++EVS+F + + + D G ED LR RDFTINGL +DP
Sbjct: 109 IRFPNQIIEVSTFRSGSNEEDSLITKD--NLWGSAEEDVLR------RDFTINGLFYDPS 160
Query: 201 AKIVYDYMGGMEDIVKAKVRTVVPAATSFQEDCARILRAIRIAARLGFSISRETAHSVKN 260
++++ DY GG+ED+ +RT+ F++D R+LR ++I +R F++ +T +++
Sbjct: 161 SEVIIDYTGGVEDLKNRYLRTIGDPFLRFKQDPVRMLRLLKILSRYAFTVDPKTLEALRE 220
Query: 261 LSYSILRLDKGRLMMEMNYMLAYGSAEASLRLLWRFGLLDILLPFQAVYF 310
+ +++ + R+ E+ +L+ G + +L + +L+IL P+ + F
Sbjct: 221 SRHELIKSSQPRVFEELIKVLSSGESTIFFQLASEYRILEILFPYMSKAF 270
>ref|NP_219920.1| PolyA Polymerase [Chlamydia trachomatis D/UW-3/CX]
gi|3328838|gb|AAC68007.1| PolyA Polymerase [Chlamydia
trachomatis D/UW-3/CX] gi|7469015|pir||D71518 probable
polya polymerase - Chlamydia trachomatis (serotype D,
strain UW3/Cx)
Length = 425
Score = 157 bits (397), Expect = 8e-37
Identities = 85/230 (36%), Positives = 134/230 (57%), Gaps = 8/230 (3%)
Query: 81 VLSTLKKKGYDVYLVGGCVRDLILKQTPKDFDILTSADLKEVMRSFSWCEIVGKRFPICH 140
V+ TLKK GY+ Y+VGGC+RDL+LK PKDFDI TSA +EV F C +VGKRF + H
Sbjct: 49 VVRTLKKAGYEAYIVGGCIRDLLLKTEPKDFDISTSAKPEEVKTLFKNCILVGKRFRLAH 108
Query: 141 VHMDGTVVEVSSFNTNKFKPRTRFVHDIEAPNGCDNEDFLRWKNCLNRDFTINGLMFDPY 200
+ ++EV++F + + + D G ED LR RDFTINGL +DP
Sbjct: 109 IRFPNQIIEVATFRSGSNEEDSLITKD--NLWGSAEEDVLR------RDFTINGLFYDPS 160
Query: 201 AKIVYDYMGGMEDIVKAKVRTVVPAATSFQEDCARILRAIRIAARLGFSISRETAHSVKN 260
A+I+ DY GG+ED+ +RT+ F++D R+LR ++I +R F++ +T +++
Sbjct: 161 AEIIIDYTGGVEDLKNRYLRTIGDPFLRFKQDPVRMLRLLKILSRYAFTVDPKTLEALQE 220
Query: 261 LSYSILRLDKGRLMMEMNYMLAYGSAEASLRLLWRFGLLDILLPFQAVYF 310
+ +++ + R+ E+ +L+ G + +L +L+IL P+ A F
Sbjct: 221 SCHELVKSSQPRVFEEIIKVLSSGESTIFFQLASEHRVLEILFPYMAKAF 270
>emb|CAH64205.1| putative poly(A) polymerase [Chlamydophila abortus S26/3]
gi|62185370|ref|YP_220155.1| putative poly(A) polymerase
[Chlamydophila abortus S26/3]
Length = 428
Score = 154 bits (389), Expect = 7e-36
Identities = 81/225 (36%), Positives = 127/225 (56%), Gaps = 8/225 (3%)
Query: 81 VLSTLKKKGYDVYLVGGCVRDLILKQTPKDFDILTSADLKEVMRSFSWCEIVGKRFPICH 140
V+ TL+K G+ Y+VGGC+RDL+L TPKDFDI TSA +E+ F C +VGKRF + H
Sbjct: 48 VVKTLRKAGHKAYIVGGCIRDLLLNTTPKDFDISTSAKPEEIKAVFKNCILVGKRFRLAH 107
Query: 141 VHMDGTVVEVSSFNTNKFKPRTRFVHDIEAPNGCDNEDFLRWKNCLNRDFTINGLMFDPY 200
+ ++EVS+F + D G ED LR RDFTINGL +DP
Sbjct: 108 IRFSNQIIEVSTFRSGSADEDCLITKD--NLWGTAEEDVLR------RDFTINGLFYDPT 159
Query: 201 AKIVYDYMGGMEDIVKAKVRTVVPAATSFQEDCARILRAIRIAARLGFSISRETAHSVKN 260
+ + DY GG+ D+ +RT+ F++D R+LR ++I AR F++ +T +++
Sbjct: 160 EETIIDYTGGVSDLENRYLRTIGDPFVRFKQDPVRMLRLLKILARAHFTVDPKTLEALQE 219
Query: 261 LSYSILRLDKGRLMMEMNYMLAYGSAEASLRLLWRFGLLDILLPF 305
Y +++ + R+ E+ ML G + +L ++ +L+IL P+
Sbjct: 220 CRYELIKSSQARVFEELIKMLGSGVSSQFFKLTAKYQILEILFPY 264
>gb|AAP05532.1| poly(A) polymerase family protein [Chlamydophila caviae GPIC]
gi|29840548|ref|NP_829654.1| poly(A) polymerase family
protein [Chlamydophila caviae GPIC]
Length = 428
Score = 154 bits (388), Expect = 9e-36
Identities = 81/234 (34%), Positives = 130/234 (54%), Gaps = 26/234 (11%)
Query: 81 VLSTLKKKGYDVYLVGGCVRDLILKQTPKDFDILTSADLKEVMRSFSWCEIVGKRFPICH 140
V+ TL+K G+ Y+VGGC+RDL+L TPKDFDI TSA +E+ F C +VGKRF + H
Sbjct: 48 VVKTLRKAGHKAYIVGGCIRDLLLNTTPKDFDISTSAKPEEIKAVFKNCILVGKRFRLAH 107
Query: 141 VHMDGTVVEVSSFNTNKFKPRTRFVHDIEAPNGCDNEDFLRWK---------NCLNRDFT 191
+ ++EVS+F +G +ED+L K + L RDFT
Sbjct: 108 IRFSNQIIEVSTFR-----------------SGSADEDYLITKDNLWGTAEEDVLRRDFT 150
Query: 192 INGLMFDPYAKIVYDYMGGMEDIVKAKVRTVVPAATSFQEDCARILRAIRIAARLGFSIS 251
INGL +DP + + DY GG+ D+ +RT+ F++D R+LR ++I AR F++
Sbjct: 151 INGLFYDPAEETIIDYTGGVSDLQNRYLRTIGDPFVRFKQDPVRMLRLLKILARASFTVD 210
Query: 252 RETAHSVKNLSYSILRLDKGRLMMEMNYMLAYGSAEASLRLLWRFGLLDILLPF 305
+T +++ Y +++ R+ E+ ML G++ +L ++ +L+IL P+
Sbjct: 211 PKTLEALQECRYELVKSAPARVFEELIKMLGSGASSEFFKLTVKYQMLEILFPY 264
>ref|NP_301023.1| poly A polymerase [Chlamydophila pneumoniae J138]
gi|7189807|gb|AAF38681.1| poly(A) polymerase family
protein [Chlamydophila pneumoniae AR39]
gi|8979340|dbj|BAA99174.1| poly A polymerase
[Chlamydophila pneumoniae J138] gi|11362543|pir||C81526
poly(A) polymerase family protein CP0894 [imported] -
Chlamydophila pneumoniae (strain AR39)
gi|25404045|pir||D86611 poly A polymerase [imported] -
Chlamydophila pneumoniae (strain J138)
gi|16752066|ref|NP_445432.1| poly(A) polymerase family
protein [Chlamydophila pneumoniae AR39]
Length = 430
Score = 151 bits (381), Expect = 6e-35
Identities = 84/225 (37%), Positives = 127/225 (56%), Gaps = 8/225 (3%)
Query: 81 VLSTLKKKGYDVYLVGGCVRDLILKQTPKDFDILTSADLKEVMRSFSWCEIVGKRFPICH 140
V+ TL+K GY Y+VGGC+RDL+L TPKDFDI TSA +E+ F C +VGKRF + H
Sbjct: 48 VIKTLRKAGYIAYIVGGCIRDLLLNTTPKDFDISTSAKPEEIKAIFKNCILVGKRFRLAH 107
Query: 141 VHMDGTVVEVSSFNTNKFKPRTRFVHDIEAPNGCDNEDFLRWKNCLNRDFTINGLMFDPY 200
+ ++EVS+F + D G ED LR RDFTINGL +DP
Sbjct: 108 IRFSKQIIEVSTFRSGSTDEDVLITKD--NLWGTPEEDVLR------RDFTINGLFYDPE 159
Query: 201 AKIVYDYMGGMEDIVKAKVRTVVPAATSFQEDCARILRAIRIAARLGFSISRETAHSVKN 260
+ + DY GG+ D+ +RT+ T F++D R+LR ++I +R F++ +T ++
Sbjct: 160 HEEIIDYTGGVNDLRNRYLRTIGDPFTRFKQDPVRMLRLLKILSRSPFTVETQTQEALIA 219
Query: 261 LSYSILRLDKGRLMMEMNYMLAYGSAEASLRLLWRFGLLDILLPF 305
+++ + R+ E+ ML G+A+ +LL LL+IL P+
Sbjct: 220 CRQELIKSSRARVFEELIKMLNSGAAKNFFQLLIENHLLEILFPY 264
>gb|AAP98932.1| poly(A) polymerase [Chlamydophila pneumoniae TW-183]
gi|33242334|ref|NP_877275.1| poly(A) polymerase
[Chlamydophila pneumoniae TW-183]
Length = 416
Score = 150 bits (380), Expect = 7e-35
Identities = 84/225 (37%), Positives = 127/225 (56%), Gaps = 8/225 (3%)
Query: 81 VLSTLKKKGYDVYLVGGCVRDLILKQTPKDFDILTSADLKEVMRSFSWCEIVGKRFPICH 140
V+ TL+K GY Y+VGGC+RDL+L TPKDFDI TSA +E+ F C +VGKRF + H
Sbjct: 34 VIKTLRKAGYIAYIVGGCIRDLLLNTTPKDFDISTSAKPEEIKAIFKNCILVGKRFRLAH 93
Query: 141 VHMDGTVVEVSSFNTNKFKPRTRFVHDIEAPNGCDNEDFLRWKNCLNRDFTINGLMFDPY 200
+ ++EVS+F + D G ED LR RDFTINGL +DP
Sbjct: 94 IRFSKQIIEVSTFRSGSTDEDVLITKD--NLWGTPEEDVLR------RDFTINGLFYDPE 145
Query: 201 AKIVYDYMGGMEDIVKAKVRTVVPAATSFQEDCARILRAIRIAARLGFSISRETAHSVKN 260
+ + DY GG+ D+ +RT+ T F++D R+LR ++I +R F++ +T ++
Sbjct: 146 HEEIIDYTGGVNDLRNRYLRTIGDPFTRFKQDPVRMLRLLKILSRSPFTVETQTQEALIA 205
Query: 261 LSYSILRLDKGRLMMEMNYMLAYGSAEASLRLLWRFGLLDILLPF 305
+++ + R+ E+ ML G+A+ +LL LL+IL P+
Sbjct: 206 CRQELIKSSQARVFEELIKMLNSGAAKNFFQLLIENHLLEILFPY 250
>ref|NP_225159.1| Poly A Polymerase [Chlamydophila pneumoniae CWL029]
gi|7468490|pir||C72014 poly A polymerase - Chlamydophila
pneumoniae (strain CWL029) gi|4377290|gb|AAD19102.1|
Poly A Polymerase [Chlamydophila pneumoniae CWL029]
Length = 430
Score = 150 bits (380), Expect = 7e-35
Identities = 84/225 (37%), Positives = 127/225 (56%), Gaps = 8/225 (3%)
Query: 81 VLSTLKKKGYDVYLVGGCVRDLILKQTPKDFDILTSADLKEVMRSFSWCEIVGKRFPICH 140
V+ TL+K GY Y+VGGC+RDL+L TPKDFDI TSA +E+ F C +VGKRF + H
Sbjct: 48 VIKTLRKAGYIAYIVGGCIRDLLLNTTPKDFDISTSAKPEEIKAIFKNCILVGKRFRLAH 107
Query: 141 VHMDGTVVEVSSFNTNKFKPRTRFVHDIEAPNGCDNEDFLRWKNCLNRDFTINGLMFDPY 200
+ ++EVS+F + D G ED LR RDFTINGL +DP
Sbjct: 108 IRFSKQIIEVSTFRSGSTDEDVLITKD--NLWGTPEEDVLR------RDFTINGLFYDPE 159
Query: 201 AKIVYDYMGGMEDIVKAKVRTVVPAATSFQEDCARILRAIRIAARLGFSISRETAHSVKN 260
+ + DY GG+ D+ +RT+ T F++D R+LR ++I +R F++ +T ++
Sbjct: 160 HEEIIDYTGGVNDLRNRYLRTIGDPFTRFKQDPVRMLRLLKILSRSPFTVETQTQEALIA 219
Query: 261 LSYSILRLDKGRLMMEMNYMLAYGSAEASLRLLWRFGLLDILLPF 305
+++ + R+ E+ ML G+A+ +LL LL+IL P+
Sbjct: 220 CRQELIKSSQARVFEELIKMLNSGAAKNFFQLLIENHLLEILFPY 264
>ref|YP_233926.1| Poly(A) polymerase [Pseudomonas syringae pv. syringae B728a]
gi|63254792|gb|AAY35888.1| Poly(A) polymerase
[Pseudomonas syringae pv. syringae B728a]
Length = 491
Score = 150 bits (378), Expect = 1e-34
Identities = 101/338 (29%), Positives = 160/338 (46%), Gaps = 21/338 (6%)
Query: 51 PQNKKTPAWKKLNSKELGLRNSMIAHPTKRVLSTLKKKGYDVYLVGGCVRDLILKQTPKD 110
PQ + LNS + L+ S + ++ L+ GY YLVGGCVRD++L TPKD
Sbjct: 40 PQQHTRTTPEVLNSSQHSLQRSQFSRYAVNIVERLQNAGYQAYLVGGCVRDMMLNITPKD 99
Query: 111 FDILTSADLKEVMRSFSWCEIVGKRFPICHVHMDGTVVEVSSFNTNKFKPRTRFVHDIEA 170
FD+ TSA ++V F I+G+RF + H+H ++EV++F N P+ D
Sbjct: 100 FDVATSATPEQVRAEFRNARIIGRRFKLVHIHFGREIIEVATFRAN--HPQDDEEEDSNQ 157
Query: 171 PNGCDNEDFLR-------WKNCLNRDFTINGLMFDPYAKIVYDYMGGMEDIVKAKVRTVV 223
+ ++ LR ++ RDFTIN L +DP ++ V DY G+ DI +R +
Sbjct: 158 SSRNESGRILRDNVYGTLEEDAQRRDFTINALYYDPVSERVLDYANGVHDIRNRLIRLIG 217
Query: 224 PAATSFQEDCARILRAIRIAARLGFSISRETAHSVKNLSYSILRLDKGRLMMEMNYMLAY 283
++ED R+LRA+R AA+L F I + +A ++ L+ + + RL E+ +
Sbjct: 218 DPEQRYKEDPVRMLRAVRFAAKLDFGIEKHSAQPIRALAPMLRDIPSARLFEEVLKLFLS 277
Query: 284 GSAEASLRLLWRFGLLDILLPFQAVYFVHHRFRRRDKRTNMLLSLFSNLDKLLAPNRPCH 343
G A + +L L + L P + ++ +N L+ N D + N+P
Sbjct: 278 GHAAPTFEMLVDLELFEPLFPASSKALEYNPTYTHTLISNALI----NTDLRIKQNKPVT 333
Query: 344 SS------LWVGILALHKTLSDQPRNPLVVAAFSLAVH 375
+ LW + A K L Q R +AA A H
Sbjct: 334 PAFLFAALLWPALPA--KVLRAQERGMPPIAAMQEAAH 369
Database: nr
Posted date: Jul 5, 2005 12:34 AM
Number of letters in database: 863,360,394
Number of sequences in database: 2,540,612
Lambda K H
0.325 0.138 0.414
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 840,872,670
Number of Sequences: 2540612
Number of extensions: 33993670
Number of successful extensions: 93921
Number of sequences better than 10.0: 472
Number of HSP's better than 10.0 without gapping: 340
Number of HSP's successfully gapped in prelim test: 132
Number of HSP's that attempted gapping in prelim test: 92923
Number of HSP's gapped (non-prelim): 568
length of query: 520
length of database: 863,360,394
effective HSP length: 133
effective length of query: 387
effective length of database: 525,458,998
effective search space: 203352632226
effective search space used: 203352632226
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 77 (34.3 bits)
Lotus: description of TM0175.3